Citrus Sinensis ID: 030042

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLNVNIGCI
Secondary Structure (PSIPRED)
cccccccEEEEcccHHHHHHHHHHHHcccccEEEccccccccccEEEEccHHHHHHHHHccccHHHHccccccccEEEEEcccccEEEEccccccccccccEEEEHHHHHHHHHHHcccccEEEccEEEEEEEccccccccEEEEEccccEEEccEEEEcccHHHHHHcccccccccccccEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccEHHHHHHHHHHHHcccEEEEEccccHHHHcccEEEccHHHHHHHHHcccHHHHHHHccccccEEEEEcccccEEEEccccccccccccccEcHHHHHHHHHHHccccEEEEccEEEEEEEcccccccEEEEEEccccEEEEEEEEEccccHHHHHHHHcccccccccEEcc
Coil and Loop (DISEMBL)
MAMVEKDVVIIGAGIAGLATALALKRlgveplvleksdglrgtgaaisfAPNAWLALDALGvshklasiyppvnrisvtnlgtgatqetsltgkfgdgsgprfIHRKKLLQTLAdelpngtihfsskiaaidsqthdgsspvfiHLVDGTIVKTKFLIGCDGIHSTVAWWLglseplnvnigci
Flexible Loop (DISEMBL)
MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTnlgtgatqetsltgkfgdgsgPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAwwlglseplnvnigci
Low Complexity Region (SEG)
MAMVEKDVViigagiaglatalalKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLNVNIGCI
Disordered region (IsUnstruct)
*****KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGATQ***LTGKFG***GPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLNVNIGC*
Disordered Region (DISOPRED)
****EKD**IIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLNVNIGCI
Disordered Region (DISEMBL)
MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLNVNIGCI
Disordered Region (DISPRO)
****EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLNVNIGCI
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLNVNIGCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
B6D1N4	384	FAD-dependent urate hydro	yes	no	0.864	0.414	0.272	2e-10
A6T923	384	FAD-dependent urate hydro	yes	no	0.864	0.414	0.272	2e-10
Q9F131	394	3-hydroxybenzoate 6-hydro	N/A	no	0.880	0.411	0.291	2e-10
Q53552	435	Salicylate hydroxylase OS	no	no	0.836	0.354	0.304	3e-08
Q7AHT0	428	Protein FixC OS=Escherich	N/A	no	0.885	0.380	0.272	3e-05
Q5EXK1	397	3-hydroxybenzoate 6-hydro	yes	no	0.788	0.365	0.307	3e-05
P23262	434	Salicylate hydroxylase OS	no	no	0.771	0.327	0.264	4e-05
Q6BV21	473	Kynurenine 3-monooxygenas	yes	no	0.940	0.365	0.280	6e-05
P68644	428	Protein FixC OS=Escherich	N/A	no	0.885	0.380	0.267	0.0001
P68645	428	Protein FixC OS=Escherich	yes	no	0.885	0.380	0.267	0.0001

>sp|B6D1N4|HPXO_KLEPN FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae GN=hpxO PE=3 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 6/165 (3%)

Query: 9   VIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLAS 68
           ++IGAGI GL+ A+ALK+ G++  V E    ++  GAAIS  PN    +  LG+   + +
Sbjct: 4   IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query: 69  IYPPVNRISVTNLGTGA--TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSS 126
              P+ R++  +  +G   TQ +        GS P  + R +L + + D     ++ F  
Sbjct: 64  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 123

Query: 127 KIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWL 171
           ++    ++  + +  V +   DG+      LI  DG HS +  W+
Sbjct: 124 RV----TRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWV 164

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.
Klebsiella pneumoniae (taxid: 573)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: 3

>sp|A6T923|HPXO_KLEP7 FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 6/165 (3%)

Query: 9   VIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLAS 68
           ++IGAGI GL+ A+ALK+ G++  V E    ++  GAAIS  PN    +  LG+   + +
Sbjct: 4   IVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMET 63

Query: 69  IYPPVNRISVTNLGTGA--TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSS 126
              P+ R++  +  +G   TQ +        GS P  + R +L + + D     ++ F  
Sbjct: 64  FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGK 123

Query: 127 KIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWL 171
           ++    ++  + +  V +   DG+      LI  DG HS +  W+
Sbjct: 124 RV----TRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWV 164

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

>sp|Q9F131|3HBH1_PSEAC 3-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas alcaligenes GN=xlnD PE=1 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 4   VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVS 63
           +  +++I GAGI GL+ AL L R G+  +VLEK+  L   GA I  APNA+ ALDALG+ 
Sbjct: 1   MHNNILIAGAGIGGLSAALGLARKGMRSIVLEKAPELGEIGAGIQLAPNAYHALDALGIG 60

Query: 64  HKLASIYPPVNR-ISVTNLGTGATQETSLTGKFGDGSGPRF--IHRKKLLQTLADEL-PN 119
                    V++ + +  +         L  +F +  G  +  IHR      L +     
Sbjct: 61  EVARQTGVHVDKLLWMDGMTDKEIASVPLANRFREFFGNPYAVIHRADFHGLLVEACHKT 120

Query: 120 GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
           G +   +    +D +         +H  DG+ +    L+G DG+ S V
Sbjct: 121 GLVEVRTNAEVVDYENFPDRVEAILH--DGSCINGAVLVGADGLWSNV 166

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. The affinity of the enzyme toward NAD is twice as high as for NADP. The enzyme shows higher specific activities against the intermediates in the degradation of 2,5-xylenol and 3,5-xylenol, 3-hydroxy-4-methylbenzoate and 3-hydroxy-5-methylbenzoate, respectively, than for 3-hydroxybenzoate. It also shows activity against 3-substituted benzoates.

Pseudomonas alcaligenes (taxid: 43263)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

>sp|Q53552|NHG2_PSEPU Salicylate hydroxylase OS=Pseudomonas putida GN=nahG PE=4 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 71/164 (43%), Gaps = 10/164 (6%)

Query: 8   VVIIGAGIAGLATALAL-KRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSH-- 64
           V I+G GI+GLA AL+L K   +   + E +      GA +SF PNA  A+  LG+    
Sbjct: 13  VAIVGGGISGLALALSLCKHSHLNVQLFEAAPAFGEVGAGVSFGPNAVRAIVGLGLGQAY 72

Query: 65  -KLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIH 123
            ++A   P            G+  + S  G    G G   +HR   L  L   LP G   
Sbjct: 73  FQVADRTPQPWEDIWFEWRRGS--DASYLGATIAGVGQSSVHRADFLDALVKHLPEGIAQ 130

Query: 124 FSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
           F  +   I+ Q  +    + +   DGT  +   LIG DGI S +
Sbjct: 131 FRKRATQIEQQGDE----LQVLFRDGTEYRCDLLIGRDGIKSAL 170

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

>sp|Q7AHT0|FIXC_ECO57 Protein FixC OS=Escherichia coli O157:H7 GN=fixC PE=3 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 28/191 (14%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
           D +I+GAG+AG   AL L R G + LV+E     RG  A         L       +H L
Sbjct: 7   DAIIVGAGLAGSVAALVLAREGAQVLVIE-----RGNSAGAKNVTGGRL------YAHSL 55

Query: 67  ASIYP------PVNRISVTNLGTGATQETSLTGKF--GDGSGPR----FIHRKKLLQTLA 114
             I P      PV R+         T+++++T  +  GD + P      + R K    L 
Sbjct: 56  EHIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLM 115

Query: 115 DELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLS 174
           ++         + I   +    DG   V     DG +++ K +I  DG++S +A  LG++
Sbjct: 116 EQAEEAGAQLITGIRVDNLVQRDGK--VVGVEADGDVIEAKTVILADGVNSILAEKLGMA 173

Query: 175 ---EPLNVNIG 182
              +P NV +G
Sbjct: 174 KRVKPTNVAVG 184

Could be part of an electron transfer system required for anaerobic carnitine reduction.

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q5EXK1|3HBH_KLEOX 3-hydroxybenzoate 6-hydroxylase OS=Klebsiella oxytoca GN=mhbM PE=1 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 8/153 (5%)

Query: 20  TALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVT 79
           TAL+L R G++ ++LEK+  +   GA I   PNA+ ALD+LGV           + I++ 
Sbjct: 19  TALSLARQGIKVMLLEKAHEIGEIGAGIQLGPNAFSALDSLGVGEVARQRAVFTDHITMM 78

Query: 80  NLGTGATQETSLTGK-FGDGSGPRF--IHRKKLLQTLAD-ELPNGTIHFSSKIAAID-SQ 134
           +   G       TG+ F D  G  +  IHR  +  T+ +  L +  + + +    +D  Q
Sbjct: 79  DAVNGEEVVHIETGQAFRDHFGGPYAVIHRVDIHATVWEAALTHPAVEYRTSTQVVDIRQ 138

Query: 135 THDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
           T D    V +    G       LIGCDG  S V
Sbjct: 139 TADD---VTVFDDKGNSWTADILIGCDGGKSVV 168

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. NAD and NADP function equally well.

Klebsiella oxytoca (taxid: 571)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

>sp|P23262|NHG1_PSEPU Salicylate hydroxylase OS=Pseudomonas putida GN=nahG PE=1 SV=4

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 13/155 (8%)

Query: 19  ATALALKRLG-VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRIS 77
           A AL L R   ++  + E +      GA +SF PNA  A+  LG+      +    +R S
Sbjct: 21  ALALELCRYSHIQVQLFEAAPAFGEVGAGVSFGPNAVRAIVGLGLGEAYLQV---ADRTS 77

Query: 78  -----VTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAID 132
                V       +  + L      G G   +HR   +  L   LP G   F  +   ++
Sbjct: 78  EPWEDVWFEWRRGSDASYLGATIAPGVGQSSVHRADFIDALVTHLPEGIAQFGKRATQVE 137

Query: 133 SQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
            Q       V +   DGT  +   LIG DGI S +
Sbjct: 138 QQ----GGEVQVLFTDGTEYRCDLLIGADGIKSAL 168

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

>sp|Q6BV21|KMO_DEBHA Kynurenine 3-monooxygenase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=BNA4 PE=3 SV=2

 Score = 47.4 bits (111), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 84/196 (42%), Gaps = 23/196 (11%)

Query: 8   VVIIGAGIAGLATALA---------LKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLA-L 57
           V I+GAG+ G  TALA         L  L  +P  +     LR    A+S      L  +
Sbjct: 13  VGIVGAGLVGCLTALAFAAKGFSVTLFELRPDPKKVTNEKNLRSINLAVSDRGIRTLKYV 72

Query: 58  DALGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL 117
           D+      L  + P   R+ + +L +G  QE+   G FG+      I R  L   L DE+
Sbjct: 73  DSEMADRVLEHVIPMTGRM-IHDL-SGTKQESQAYGLFGESINS--IDRSFLNDYLLDEI 128

Query: 118 PNGTI--HFSSKIAAIDSQTHDGSSPVFIHL-----VDGTIVKTKF--LIGCDGIHSTVA 168
            +  I  HF+ K+  +D  + +  SP    L      + T+   +F  +IG DG HS   
Sbjct: 129 RHSDINVHFNHKLIRLDDLSSEEKSPKLTFLDTSESNESTMKSYEFDYVIGADGAHSQFR 188

Query: 169 WWLGLSEPLNVNIGCI 184
           + L  S  +N++   I
Sbjct: 189 YQLQKSMRMNISQEYI 204

Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

>sp|P68644|FIXC_ECOLI Protein FixC OS=Escherichia coli (strain K12) GN=fixC PE=3 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 28/191 (14%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
           D +I+GAG+AG   AL L R G + LV+E     RG  A         L       +H L
Sbjct: 7   DAIIVGAGLAGSVAALVLAREGAQVLVIE-----RGNSAGAKNVTGGRL------YAHSL 55

Query: 67  ASIYP------PVNRISVTNLGTGATQETSLTGKF--GDGSGPR----FIHRKKLLQTLA 114
             I P      PV R+         T+++++T  +  GD + P      + R K    L 
Sbjct: 56  EHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLM 115

Query: 115 DELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLS 174
           ++         + I   +    DG   V     DG +++ K +I  DG++S +A  LG++
Sbjct: 116 EQAEEAGAQLITGIRVDNLVQRDGK--VVGVEADGDVIEAKTVILADGVNSILAEKLGMA 173

Query: 175 ---EPLNVNIG 182
              +P +V +G
Sbjct: 174 KRVKPTDVAVG 184

Could be part of an electron transfer system required for anaerobic carnitine reduction.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P68645|FIXC_ECOL6 Protein FixC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fixC PE=3 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 28/191 (14%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
           D +I+GAG+AG   AL L R G + LV+E     RG  A         L       +H L
Sbjct: 7   DAIIVGAGLAGSVAALVLAREGAQVLVIE-----RGNSAGAKNVTGGRL------YAHSL 55

Query: 67  ASIYP------PVNRISVTNLGTGATQETSLTGKF--GDGSGPR----FIHRKKLLQTLA 114
             I P      PV R+         T+++++T  +  GD + P      + R K    L 
Sbjct: 56  EHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLM 115

Query: 115 DELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLS 174
           ++         + I   +    DG   V     DG +++ K +I  DG++S +A  LG++
Sbjct: 116 EQAEEAGAQLITGIRVDNLVQRDGK--VVGVEADGDVIEAKTVILADGVNSILAEKLGMA 173

Query: 175 ---EPLNVNIG 182
              +P +V +G
Sbjct: 174 KRVKPTDVAVG 184

Could be part of an electron transfer system required for anaerobic carnitine reduction.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
255578424	462	monoxygenase, putative [Ricinus communis	0.945	0.376	0.589	6e-50
255578420	408	monoxygenase, putative [Ricinus communis	0.918	0.414	0.589	1e-49
225431405	411	PREDICTED: 3-hydroxybenzoate 6-hydroxyla	0.934	0.418	0.562	1e-47
224056051	404	predicted protein [Populus trichocarpa]	0.918	0.418	0.614	8e-47
296088642	356	unnamed protein product [Vitis vinifera]	0.923	0.477	0.557	1e-46
359477076	408	PREDICTED: 3-hydroxybenzoate 6-hydroxyla	0.923	0.416	0.557	4e-46
359477074	413	PREDICTED: 3-hydroxybenzoate 6-hydroxyla	0.945	0.421	0.545	3e-45
224105743	414	predicted protein [Populus trichocarpa]	0.940	0.417	0.588	2e-44
224126917	417	predicted protein [Populus trichocarpa]	0.961	0.424	0.588	3e-44
255578418	412	monoxygenase, putative [Ricinus communis	0.934	0.417	0.565	2e-41

>gi|255578424|ref|XP_002530077.1| monoxygenase, putative [Ricinus communis] gi|223530430|gb|EEF32317.1| monoxygenase, putative [Ricinus communis]

 Score =  202 bits (513), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 105/178 (58%), Positives = 128/178 (71%), Gaps = 4/178 (2%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDAL 60
           M MV+ D VI+GAGIAGLATA+ALKR+G++ L+LE+SDGLR TG+A++  PNAWLALDAL
Sbjct: 52  MEMVQ-DAVIVGAGIAGLATAVALKRVGIQALILERSDGLRATGSALTLFPNAWLALDAL 110

Query: 61  GVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNG 120
           GVSH L S Y    R SVTN+ TGA QE S  G  G   GP+ +HRK LL+ L  ELP  
Sbjct: 111 GVSHMLTSFYSSALRGSVTNVATGAVQEISFVGNNG---GPKSVHRKALLEALVQELPAD 167

Query: 121 TIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLN 178
           ++ FSSK  AI+     G+S   +HL DGT VK+K LIGCDG+HS VA WLGLS P +
Sbjct: 168 SVRFSSKFTAIEMVEQGGTSIPVVHLEDGTTVKSKVLIGCDGVHSVVAQWLGLSAPFH 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578420|ref|XP_002530075.1| monoxygenase, putative [Ricinus communis] gi|223530428|gb|EEF32315.1| monoxygenase, putative [Ricinus communis]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/173 (58%), Positives = 128/173 (73%), Gaps = 4/173 (2%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK 65
           +D VI+GAGIAGLATA+ALKR+G+  LVLE+SD LR TGAA++  PNAWLALDALGVSHK
Sbjct: 2   EDAVIVGAGIAGLATAVALKRVGIRALVLERSDTLRTTGAALTLFPNAWLALDALGVSHK 61

Query: 66  LASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFS 125
           L S+Y P++  SVT + TGA QE S    F     PR +HR+ LL+ LA ELP  ++ FS
Sbjct: 62  LTSLYSPISGGSVTKVDTGAVQEIS----FAANIEPRSVHRRALLEALAQELPPDSVKFS 117

Query: 126 SKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLN 178
           +KI  ID Q  +G+S   + L DGT +K+K LIGCDG+HS VA WLGLSEP++
Sbjct: 118 AKITTIDVQEQNGASSAVVCLEDGTTIKSKVLIGCDGVHSVVAKWLGLSEPIH 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431405|ref|XP_002272608.1| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1 [Vitis vinifera] gi|296088643|emb|CBI37634.3| unnamed protein product [Vitis vinifera]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/176 (56%), Positives = 134/176 (76%), Gaps = 4/176 (2%)

Query: 3   MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGV 62
           ++E+++VI+GAGIAGLATA+ALKR+G+  LVLE+SDGLR +GAA++ APNAWLALDALGV
Sbjct: 5   VLEEEIVIVGAGIAGLATAIALKRVGIRALVLERSDGLRVSGAALTLAPNAWLALDALGV 64

Query: 63  SHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTI 122
           +HKL  +Y    ++ +TN+ TGA QE SL     +  GP  +HRK LL++LA+ELP  +I
Sbjct: 65  AHKLTPLYAVREKMCITNVATGAVQEVSLIRN--NRGGPITVHRKALLESLAEELPRHSI 122

Query: 123 HFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLN 178
            FSSK  +I++Q  +G  P  I L DGT++ TK LIGCDG++S VA  LGL+EP+N
Sbjct: 123 RFSSKPISIEAQAQEG--PYTIRLEDGTVITTKVLIGCDGVNSFVARKLGLTEPVN 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056051|ref|XP_002298720.1| predicted protein [Populus trichocarpa] gi|222845978|gb|EEE83525.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (486), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 107/174 (61%), Positives = 133/174 (76%), Gaps = 5/174 (2%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK 65
           +DVVI+GAGIAGLATA+ALKR+GV  LVLE+S GLR TGAAIS  PNAWLALDALGVSHK
Sbjct: 3   EDVVIVGAGIAGLATAVALKRVGVRALVLERSQGLRSTGAAISLFPNAWLALDALGVSHK 62

Query: 66  LASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFS 125
           L  IY P+ ++ VTN+ TG  Q+      F  G GPR +HRK LL+ LA+EL   +I FS
Sbjct: 63  LTRIYDPLFKVHVTNVSTGDVQQVL----FPAGHGPRAVHRKALLEALAEELLADSIRFS 118

Query: 126 SKIAAIDSQTHDGSSPV-FIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLN 178
           SK+AAI+S+   G + +  +HL DGTI+K+K LIGCDG+HS VA WLGL+EP++
Sbjct: 119 SKLAAIESEEQGGGASIAVVHLEDGTIIKSKVLIGCDGLHSIVARWLGLAEPVH 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088642|emb|CBI37633.3| unnamed protein product [Vitis vinifera]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/174 (55%), Positives = 129/174 (74%), Gaps = 4/174 (2%)

Query: 5   EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSH 64
           E+++VI+G GIAGLATA+AL+R+G+  LVLE+SDGLR TGAA+   PNAW ALDALGV+H
Sbjct: 25  EEEIVIVGGGIAGLATAVALQRVGIRALVLERSDGLRATGAALGLFPNAWRALDALGVAH 84

Query: 65  KLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHF 124
           KL ++Y    +  VT++ TGA QE SL G   D  GP  +HRK LL++LA+ELP  +I F
Sbjct: 85  KLTAVYAVRKKAYVTDVATGAVQEVSLMGNNSD--GPITVHRKALLESLAEELPRNSIRF 142

Query: 125 SSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLN 178
           SSK  +I++Q  +G  P  I L DGT++ TK LIGCDG++S VA  LGL++P+N
Sbjct: 143 SSKPISIEAQGQEG--PYAIRLEDGTVITTKVLIGCDGVNSFVARKLGLTQPVN 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477076|ref|XP_002272571.2| PREDICTED: 3-hydroxybenzoate 6-hydroxylase-like [Vitis vinifera]

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/174 (55%), Positives = 129/174 (74%), Gaps = 4/174 (2%)

Query: 5   EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSH 64
           E+++VI+G GIAGLATA+AL+R+G+  LVLE+SDGLR TGAA+   PNAW ALDALGV+H
Sbjct: 4   EEEIVIVGGGIAGLATAVALQRVGIRALVLERSDGLRATGAALGLFPNAWRALDALGVAH 63

Query: 65  KLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHF 124
           KL ++Y    +  VT++ TGA QE SL G   D  GP  +HRK LL++LA+ELP  +I F
Sbjct: 64  KLTAVYAVRKKAYVTDVATGAVQEVSLMGNNSD--GPITVHRKALLESLAEELPRNSIRF 121

Query: 125 SSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLN 178
           SSK  +I++Q  +G  P  I L DGT++ TK LIGCDG++S VA  LGL++P+N
Sbjct: 122 SSKPISIEAQGQEG--PYAIRLEDGTVITTKVLIGCDGVNSFVARKLGLTQPVN 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477074|ref|XP_002272352.2| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Vitis vinifera] gi|296088638|emb|CBI37629.3| unnamed protein product [Vitis vinifera]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/176 (54%), Positives = 126/176 (71%), Gaps = 2/176 (1%)

Query: 3   MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGV 62
           + E++VVI+GAGIAGLATA+ALKR+G+  LVLE+SD LR TGAA++  PNAW ALDALGV
Sbjct: 4   IAEEEVVIVGAGIAGLATAVALKRVGIRALVLERSDCLRATGAALTLFPNAWRALDALGV 63

Query: 63  SHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTI 122
           SHKL  +Y    +  VTN+ TGA QE SL+    +  GP  +HRK LL++LA+ELP+ +I
Sbjct: 64  SHKLTPLYAVREKSYVTNVTTGAIQEVSLSRN--NRGGPITVHRKALLESLAEELPSNSI 121

Query: 123 HFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLN 178
            FSSK+ + + +         I L DGT++  K LIGCDG+HS VA  LGL+EP+N
Sbjct: 122 RFSSKLISFEVEAQAEEGLYIIRLEDGTVITAKVLIGCDGVHSLVARKLGLAEPVN 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105743|ref|XP_002333773.1| predicted protein [Populus trichocarpa] gi|222838457|gb|EEE76822.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/175 (58%), Positives = 131/175 (74%), Gaps = 2/175 (1%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK 65
           +DVVI+GAGIAGLATA+ALKR+GV  LVLE+S+GLR TGAA++  PNAWLALDALGVSHK
Sbjct: 2   EDVVIVGAGIAGLATAVALKRVGVRALVLERSEGLRATGAALTLFPNAWLALDALGVSHK 61

Query: 66  LASIYPPVNRISVTNLGTGATQET--SLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIH 123
           L  IY P +   VTN+  G  Q+    +    GD  G R +HRK LL+ LA+ELP  +I 
Sbjct: 62  LTPIYAPTSMGYVTNVSAGDVQQVHARVANNGGDVQGIRTLHRKALLEALAEELPVDSIQ 121

Query: 124 FSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLN 178
           FSSK+A I+++   G+S V IHL DGT +K+K LIGCDG++S VA WLGL+EP++
Sbjct: 122 FSSKLAVIENEEQGGASIVVIHLEDGTTIKSKVLIGCDGVNSVVARWLGLAEPVH 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126917|ref|XP_002329505.1| predicted protein [Populus trichocarpa] gi|222870185|gb|EEF07316.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 133/180 (73%), Gaps = 3/180 (1%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDAL 60
           M M+E DVVI+GAGIAGLATA+ALKR+GV  LVLE+S+GLR TGAA++  PNAW ALDAL
Sbjct: 1   MEMME-DVVIVGAGIAGLATAVALKRVGVRALVLERSEGLRATGAALTLFPNAWPALDAL 59

Query: 61  GVSHKLASIYPPVNRISVTNLGTGATQET--SLTGKFGDGSGPRFIHRKKLLQTLADELP 118
           GVSHKL  IY   +   VTN+  G  Q+    +    GDG G R IHRK LL+ LA+ELP
Sbjct: 60  GVSHKLTPIYALTSMGYVTNVSAGDVQQVLFRVANNGGDGHGIRTIHRKALLEALAEELP 119

Query: 119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLN 178
             +I FSSK+A I+++   G+S V IHL DGT +K+K LIGCDG++S VA WLGL+EP++
Sbjct: 120 VDSIQFSSKLAVIENEEQGGASIVVIHLEDGTTIKSKVLIGCDGVNSVVARWLGLAEPVH 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578418|ref|XP_002530074.1| monoxygenase, putative [Ricinus communis] gi|223530427|gb|EEF32314.1| monoxygenase, putative [Ricinus communis]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/175 (56%), Positives = 124/175 (70%), Gaps = 3/175 (1%)

Query: 4   VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVS 63
           + + VVI+G GIAG+ATA+ALKR+GV  LVLEKSDGLR TGA ++  PNAWLALDALGVS
Sbjct: 3   IMEGVVIVGGGIAGVATAVALKRVGVRALVLEKSDGLRATGAGLTLMPNAWLALDALGVS 62

Query: 64  HKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIH 123
           HKL  +Y      S+TN+  GA QE +     G   GPR +HRK LL+ LA+ELP  +I 
Sbjct: 63  HKLIPLYSSPLVGSITNVSNGAVQEVAFPVNEG---GPRTVHRKALLEALAEELPADSIR 119

Query: 124 FSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLN 178
           FS+K  +I+ Q   G S   +HL DGT +K+K LIGCDG+HS VA WLGLS P++
Sbjct: 120 FSAKFTSIEMQEQGGVSIPVLHLEDGTTIKSKVLIGCDGVHSAVARWLGLSAPIH 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2153499	406	AT5G05320 "AT5G05320" [Arabido	0.923	0.418	0.371	2e-24
TAIR|locus:2121254	407	AT4G38540 "AT4G38540" [Arabido	0.896	0.405	0.382	7.1e-24
TAIR|locus:2060584	427	CTF2B "AT2G29720" [Arabidopsis	0.907	0.391	0.352	5e-19
TAIR|locus:2058723	439	CTF2A "AT2G35660" [Arabidopsis	0.907	0.380	0.346	5.5e-19
TAIR|locus:2130694	422	MO1 "monooxygenase 1" [Arabido	0.777	0.338	0.362	1.3e-16
UNIPROTKB|G4MQ22	451	MGG_02256 "FAD binding domain-	0.75	0.305	0.297	3.1e-09
UNIPROTKB|G4MLN1	536	MGG_06761 "Uncharacterized pro	0.744	0.255	0.295	1.1e-08
TIGR_CMR|SPO_2510	388	SPO_2510 "salicylate hydroxyla	0.804	0.381	0.266	1.7e-07
UNIPROTKB|G4MP95	449	MGG_02203 "Uncharacterized pro	0.744	0.305	0.287	2.1e-07
ASPGD|ASPL0000064903	422	AN7382 [Emericella nidulans (t	0.396	0.172	0.384	9.9e-06

TAIR|locus:2153499 AT5G05320 "AT5G05320" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 65/175 (37%), Positives = 90/175 (51%)

Query:     6 KDVVXXXXXXXXXXXXXXXKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK 65
             +D++                RLG+  +VLE S+ LR TG A+S   NAW A++ALG+S  
Sbjct:     7 QDIIIVGAGISGLATALGLHRLGIRSIVLESSEQLRATGFALSLYFNAWKAMEALGISQH 66

Query:    66 LASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFS 125
             + S+        V  +  G   +  L  +  +    R + RK LL  LA ELP GTI FS
Sbjct:    67 IRSLGDRFQGWVVRPISAGDPPKEMLFPE-SEEYEVRCVQRKLLLDALAGELPQGTIRFS 125

Query:   126 SKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLNVN 180
             SK+  I+   H       +HL DGTI+KTK L+GCDG+ S V  WLG   P+  +
Sbjct:   126 SKLVHIELSGHYK----MVHLSDGTILKTKVLVGCDGVKSVVGKWLGFKNPVKTS 176

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2121254 AT4G38540 "AT4G38540" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 7.1e-24, P = 7.1e-24
 Identities = 65/170 (38%), Positives = 89/170 (52%)

Query:     7 DVVXXXXXXXXXXXXXXXKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
             D++                RLG+  +VLE S+ LR TG A +   NAW A++ALGVS  +
Sbjct:     8 DIIIVGAGISGLSTAVGLHRLGIRSMVLESSETLRATGFAFTTWFNAWKAMEALGVSQHI 67

Query:    67 ASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSS 126
              S++  +    V  +  G T  T +     +    R + RK LL+ LA ELP  TI FSS
Sbjct:    68 RSLHDRLEGWVVGTISAG-TPPTEMLFPESEEYESRCVQRKLLLEALAGELPEETIRFSS 126

Query:   127 KIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEP 176
             K+  I+     G     +HL DGTI+KTK L+GCDG++S V  WLG   P
Sbjct:   127 KVVHIELS---GCYKK-VHLSDGTILKTKVLVGCDGVYSVVGKWLGFKNP 172

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2060584 CTF2B "AT2G29720" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 5.0e-19, P = 5.0e-19
 Identities = 61/173 (35%), Positives = 89/173 (51%)

Query:     5 EKDVVXXXXXXXXXXXXXXXKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSH 64
             E+ VV                RLG+  +VLE+++ LR  GA+++ + N W  LDA+ +  
Sbjct:    42 EEKVVIVGGGIGGLATAVALHRLGIRSVVLEQAESLRTGGASLTLSKNGWRVLDAISIGP 101

Query:    65 KLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGP-RFIHRKKLLQTLADELPNGTIH 123
             +L   +  +  + V     G  +  S   K  D S   R + R+ LL+TLA +LP  TI 
Sbjct:   102 QLRKQFLEMQGV-VLKKEDGR-ELRSFKFKDNDQSQEVRGVERRVLLETLASQLPPQTIR 159

Query:   124 FSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEP 176
             FSSK+ +I S  + G +   + L DGT      +IGCDGI S VA W+G SEP
Sbjct:   160 FSSKLESIQSNAN-GDT--LLQLKDGTRFLANIVIGCDGIRSKVATWMGFSEP 209

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2058723 CTF2A "AT2G35660" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 5.5e-19, P = 5.5e-19
 Identities = 60/173 (34%), Positives = 89/173 (51%)

Query:     5 EKDVVXXXXXXXXXXXXXXXKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSH 64
             E+ VV                RLG+  +VLE+++ LR  G +++   N W  LDA+ V  
Sbjct:    44 EEKVVIVGAGIGGLATAVSLHRLGIRSVVLEQAESLRTGGTSLTLFKNGWRVLDAISVGP 103

Query:    65 KLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGP-RFIHRKKLLQTLADELPNGTIH 123
             +L + +  +  + V        +  S   K  D S   R + R+ LL+TLA +LP  TI 
Sbjct:   104 QLRTQFLEIEGMVVKK--EDGRELRSFKFKDDDQSQEVRAVERRVLLETLASQLPPQTIR 161

Query:   124 FSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEP 176
             FSSK+ +I S  + G +   + L DGT +  + +IGCDGI S VA W+G SEP
Sbjct:   162 FSSKLESIQSNAN-GDT--LLQLGDGTRLLAQIVIGCDGIRSKVATWMGFSEP 211

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2130694 MO1 "monooxygenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 54/149 (36%), Positives = 80/149 (53%)

Query:    26 RLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85
             R G++ +VLE+++ +R  GA I    N W ALD LGV  +L      +++     +  G 
Sbjct:    49 RKGIKSVVLERAEKVRSEGAGIGTLSNGWRALDQLGVGDRLRLNSSLIHKARTMLIENGK 108

Query:    86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIH 145
              +E        D +  R I R  L++ L+D LP GTI F S I +I+ Q      PV +H
Sbjct:   109 KRE--FVSNIVDEA--RCIKRNDLVEALSDALPKGTIRFGSHIVSIE-QDKTTLFPV-VH 162

Query:   146 LVDGTIVKTKFLIGCDGIHSTVAWWLGLS 174
             L +G  +K K LIGCDG +S V+ +L L+
Sbjct:   163 LANGNSIKAKVLIGCDGANSIVSDYLQLN 191

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

UNIPROTKB|G4MQ22 MGG_02256 "FAD binding domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 144 (55.7 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 44/148 (29%), Positives = 70/148 (47%)

Query:    26 RLGVEPLVLEKSDGL-RGTGAAISFAPNAWLALDALGVSHKLASIYPPV-NRISVTNLGT 83
             R G++ ++LE    L +  G +I   P+    LD LG+  +   +Y PV N+I++   GT
Sbjct:    25 RAGIDHVLLEMRPKLDKEAGTSIGMWPHNVRVLDQLGLLDEALDLYMPVLNKINLRRDGT 84

Query:    84 GATQETSLTGKFGDGSGPRFI--HRKKLLQTLADELPNGT--IHFSSKIAAIDSQTHDGS 139
               T    +        G  F+  HR +L+  L   LP  T  + F+ K+ AI+  T D  
Sbjct:    85 -VTSRNDMFAAIQRNHGHDFMCFHRARLMDLLYRRLPANTERVLFNKKVLAIEETTPDS- 142

Query:   140 SPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
               V +   DG+      ++G DG+HS V
Sbjct:   143 --VTVTCGDGSTYTGSMVLGADGVHSAV 168

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G4MLN1 MGG_06761 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 140 (54.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 44/149 (29%), Positives = 74/149 (49%)

Query:    26 RLGVEPLVLEKSD--GLRGTGAAISFAPNAWLALDALGVSHKLASIYPP-VNRISVTNLG 82
             R G++  +LE+ D  GL   G A++  P A   LD LG+  +   +Y P V +I+ T  G
Sbjct:    75 RAGIDWTLLERRDDGGLVQPGTALALWPQAARVLDQLGLLEEAEKLYLPLVGKINFTKDG 134

Query:    83 TGATQETSLTGKFGDGSG-PRFIH-RKKLLQTLADELPNGT--IHFSSKIAAIDSQTHDG 138
             T     +++  + G   G P  +  R+ L+  LA  LP+    + +   +++I S   + 
Sbjct:   135 T-VVGTSNMIERLGTNHGYPWMLFDRQVLVDFLARRLPDHETRVQYGKCVSSIVSTPSEA 193

Query:   139 SSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
                  I   DGT+++   +IGCDG+ S V
Sbjct:   194 R----ITCTDGTVIRGSLIIGCDGVRSGV 218

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2510 SPO_2510 "salicylate hydroxylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 41/154 (26%), Positives = 69/154 (44%)

Query:    25 KRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT- 83
             K  G +  VLE++D +   GA I  +PN    L ALG+     +I      + +++    
Sbjct:    23 KARGADVTVLEQADAIAEVGAGIQVSPNGAAVLGALGLGPAFEAISVRGRAVVLSDYRRP 82

Query:    84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVF 143
             G      L    GD     F+HR  L+  LA  +    ++    +  +D +   GS PV 
Sbjct:    83 GEVLRLDLMRHAGD-QRYAFVHRADLIDLLAGAVRRAGVNVRL-LQKVD-RVDPGSPPV- 138

Query:   144 IHLVDGTIVKTKFLIGCDGIHSTVAWWL-GLSEP 176
             +H+ +G  +    ++G DG+HS     L G ++P
Sbjct:   139 LHMCNGAHLTADLVVGADGLHSRARAALNGAAKP 172

GO:0018658 "salicylate 1-monooxygenase activity" evidence=ISS

GO:0018931 "naphthalene metabolic process" evidence=ISS

UNIPROTKB|G4MP95 MGG_02203 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 127 (49.8 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 42/146 (28%), Positives = 65/146 (44%)

Query:    28 GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA-T 86
             G++  + E++  LR  GA I+  PN    L+ LG+++ L       N+     +   A T
Sbjct:    30 GIDVHIYERTKELREVGATIALGPNGLRTLERLGINNALDDSIAFRNKSGHPMIFRHAQT 89

Query:    87 QET-SLTGKFGDGSGPRF----IHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSP 141
              ET S+    G    PR       R  L + L   +    +H     ++I  QT DGS  
Sbjct:    90 NETVSVDNHVGHIE-PRHHTARFFRPHLQRALLQHVDPSRLHLGKAFSSI-KQTQDGSR- 146

Query:   142 VFIHLVDGTIVKTKFLIGCDGIHSTV 167
             + +   DGT  +   ++G DGIHS V
Sbjct:   147 IVLSFTDGTAAQADVVLGADGIHSAV 172

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000064903 AN7382 [Emericella nidulans (taxid:162425)]

 Score = 119 (46.9 bits), Expect = 9.9e-06, P = 9.9e-06
 Identities = 30/78 (38%), Positives = 40/78 (51%)

Query:    99 SGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI 158
             SG   + R   L  L   +P G  HF  ++AA+  +T DG   V +   DGT  +   +I
Sbjct:   116 SGQTTVRRADFLDALVRLVPEGIAHFGKRLAAL-VETGDG---VEMRFEDGTAARASVVI 171

Query:   159 GCDGIHSTVAWW-LGLSE 175
             GCDGIHS V  + LG  E
Sbjct:   172 GCDGIHSKVKQFVLGADE 189

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00012325	hypothetical protein (404 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_21739000001	annotation not avaliable (101 aa)			•						0.455

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	2e-31
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	1e-21
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	2e-21
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	1e-18
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-15
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	1e-13
PRK06475	400	PRK06475, PRK06475, salicylate hydroxylase; Provis	2e-13
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	5e-12
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	2e-10
TIGR03219	414	TIGR03219, salicylate_mono, salicylate 1-monooxyge	2e-10
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	3e-10
PRK07333	403	PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl h	7e-10
PRK07236	386	PRK07236, PRK07236, hypothetical protein; Provisio	2e-08
PRK05868	372	PRK05868, PRK05868, hypothetical protein; Validate	3e-08
PRK07588	391	PRK07588, PRK07588, hypothetical protein; Provisio	3e-08
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	5e-08
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	8e-08
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	1e-07
PRK05732	395	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl h	2e-07
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	2e-07
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	4e-07
PRK12844	557	PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrog	5e-07
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	5e-07
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	5e-07
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	8e-07
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	9e-07
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	1e-06
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	1e-06
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	1e-06
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	4e-06
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	4e-06
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	5e-06
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	6e-06
PRK11728	393	PRK11728, PRK11728, hydroxyglutarate oxidase; Prov	7e-06
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	8e-06
PRK12842	574	PRK12842, PRK12842, putative succinate dehydrogena	8e-06
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	9e-06
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	1e-05
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	2e-05
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	2e-05
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	3e-05
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	4e-05
TIGR01790	388	TIGR01790, carotene-cycl, lycopene cyclase family	5e-05
PRK06185	407	PRK06185, PRK06185, hypothetical protein; Provisio	5e-05
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	8e-05
PLN02927	668	PLN02927, PLN02927, antheraxanthin epoxidase/zeaxa	8e-05
TIGR01989	437	TIGR01989, COQ6, ubiquinone biosynthesis monooxyge	8e-05
PRK08274	466	PRK08274, PRK08274, tricarballylate dehydrogenase;	9e-05
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	9e-05
PRK06069	577	PRK06069, sdhA, succinate dehydrogenase flavoprote	1e-04
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	1e-04
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	1e-04
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	1e-04
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	1e-04
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	1e-04
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	2e-04
PRK07190	487	PRK07190, PRK07190, hypothetical protein; Provisio	2e-04
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	2e-04
TIGR01813	439	TIGR01813, flavo_cyto_c, flavocytochrome c	2e-04
PRK07804	541	PRK07804, PRK07804, L-aspartate oxidase; Provision	3e-04
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	3e-04
PRK07121	492	PRK07121, PRK07121, hypothetical protein; Validate	3e-04
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	3e-04
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	3e-04
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	3e-04
TIGR03364	365	TIGR03364, HpnW_proposed, FAD dependent oxidoreduc	3e-04
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	4e-04
PRK06134	581	PRK06134, PRK06134, putative FAD-binding dehydroge	4e-04
COG0029	518	COG0029, NadB, Aspartate oxidase [Coenzyme metabol	5e-04
PRK08773	392	PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methox	5e-04
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	5e-04
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	7e-04
TIGR00562	462	TIGR00562, proto_IX_ox, protoporphyrinogen oxidase	7e-04
PRK12843	578	PRK12843, PRK12843, putative FAD-binding dehydroge	7e-04
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	7e-04
PRK10157	428	PRK10157, PRK10157, putative oxidoreductase FixC;	8e-04
PLN02576	496	PLN02576, PLN02576, protoporphyrinogen oxidase	8e-04
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	8e-04
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	9e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	0.001
COG0578	532	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase	0.001
pfam01134	391	pfam01134, GIDA, Glucose inhibited division protei	0.003
PRK12769	654	PRK12769, PRK12769, putative oxidoreductase Fe-S b	0.003
PRK06481	506	PRK06481, PRK06481, fumarate reductase flavoprotei	0.003
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	0.004

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  116 bits (292), Expect = 2e-31
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 14/168 (8%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKS-DGLRGTGAAISFAPNAWLALDALGVSHK 65
           DV I+GAG AGLA ALAL R G++  +LE++   L   G  I+ +PNA  AL+ LG+  +
Sbjct: 4   DVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDR 63

Query: 66  LASI-YPPVNRISVTNLGTGATQETSLTGKFGDGSGPRF-IHRKKLLQTL---ADELPNG 120
           L ++  PP++ + V + G                    + + R  LL  L   A  LPN 
Sbjct: 64  LEALGVPPLHVMVVDDGGRRLLI---FDAAELGRGALGYVVPRSDLLNALLEAARALPNV 120

Query: 121 TIHFSSKIAAIDSQTHDGSSPVFIHLV-DGTIVKTKFLIGCDGIHSTV 167
           T+ F +++ A++         V + L  DG  +    L+G DG +S V
Sbjct: 121 TLRFGAEVEAVEQDGDG----VTVTLSFDGETLDADLLVGADGANSAV 164

Length = 387

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 90.3 bits (225), Expect = 1e-21
 Identities = 50/180 (27%), Positives = 73/180 (40%), Gaps = 33/180 (18%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
            V+I G GI GL  AL L + G+E +V E +  LR  G  I+  P+A   L  LG+   L
Sbjct: 2   KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDAL 61

Query: 67  ASIYPPVNRISVTNLGTGATQETSLTGKFGD---------GSG---PRF-IHRKKLLQTL 113
                    I +       T+E +   + G           +G   P++ IHR +L   L
Sbjct: 62  D-------AIGI------RTRELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLL 108

Query: 114 ADE----LPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI--VKTKFLIGCDGIHSTV 167
            D     L    +    ++   + Q  D +         G +  V+   LIG DGIHS V
Sbjct: 109 LDAVRERLGPDAVRTGHRVVGFE-QDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAV 167

Length = 413

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 89.3 bits (222), Expect = 2e-21
 Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 23/179 (12%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDAL 60
           M  V   V+I+G GI GLA ALAL R G++  +LE++  +   GA I   PNA+ ALDAL
Sbjct: 1   MTKVTP-VLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDAL 59

Query: 61  GVSHKL--ASIYP-------PVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQ 111
           GV       +++         V+   V  + TG     +   +FG+      IHR  +  
Sbjct: 60  GVGEAARQRAVFTDHLTMMDAVDAEEVVRIPTGQ----AFRARFGNPYA--VIHRADIHL 113

Query: 112 TL---ADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
           +L     + P      S+ +  I+ Q  DG   V +    G       LIGCDG+ S V
Sbjct: 114 SLLEAVLDHPLVEFRTSTHVVGIE-QDGDG---VTVFDQQGNRWTGDALIGCDGVKSVV 168

Length = 396

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 81.3 bits (201), Expect = 1e-18
 Identities = 49/162 (30%), Positives = 70/162 (43%), Gaps = 12/162 (7%)

Query: 8   VVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLA 67
           + IIGAGI GL  A  L+  G E  V EK++ ++  GA I    N    +  LG  H LA
Sbjct: 3   IAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDN---VIKKLGN-HDLA 58

Query: 68  S-IYPPVNRISVTNLGTGATQETSLTG-KFGDGSGPRFIHRKKLLQTLADELPNGTIHFS 125
             I      +S  NL     + T L   K    +    +HR+ L+  +   +    I   
Sbjct: 59  KGIKNAGQILSTMNLLD--DKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTG 116

Query: 126 SKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
            ++  I+++    +  V IH  DG        IG DGIHS V
Sbjct: 117 KEVTKIENE----TDKVTIHFADGESEAFDLCIGADGIHSKV 154

Length = 373

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 44/173 (25%), Positives = 65/173 (37%), Gaps = 15/173 (8%)

Query: 3   MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEK--SDGLRGTGAAISFAPNAWLALDAL 60
           M+E DVVI+GAG AG + A  L + G++ LVLEK    G +        +P A   L   
Sbjct: 1   MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGG-LSPRALEELIPD 59

Query: 61  GVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNG 120
                   I   V    +   G     + ++    G+G     + R K  + LA+     
Sbjct: 60  F----DEEIERKVTGARIYFPGE----KVAIEVPVGEGYI---VDRAKFDKWLAERAEEA 108

Query: 121 TIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGL 173
                           D    V         V+ K +I  DG++S +A  LGL
Sbjct: 109 GAELYPGTRVTGVIREDDGVVV-GVRAGDDEVRAKVVIDADGVNSALARKLGL 160

Length = 396

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDAL 60
           MA V+K V+I+G GI GL+ A+AL+R G+   ++E     R  GA I+   NA  AL  L
Sbjct: 1   MAAVKK-VLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALREL 59

Query: 61  GVSHK-LASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRF--IHRKKLLQTLAD-- 115
           GV  + L + +   + + +     G       T +      P    I R  L + LAD  
Sbjct: 60  GVLDECLEAGF-GFDGVDLF-DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAA 117

Query: 116 ELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
                 +   + + AI+ Q  DG   V +   DGT  +   ++G DG++S V
Sbjct: 118 RAAGADVRLGTTVTAIE-QDDDG---VTVTFSDGTTGRYDLVVGADGLYSKV 165

Length = 375

>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 53/181 (29%), Positives = 74/181 (40%), Gaps = 31/181 (17%)

Query: 4   VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVS 63
                +I GAG+AGL+ AL L   G    ++EK+  L   GA +  APNA   L+ LGV+
Sbjct: 1   TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVA 60

Query: 64  HKLASIYPPVNRISVT----NLGTGATQETSLTGKFGDGSGPRF------IHRKKLLQTL 113
            +L+          VT     L  G      L  + GD +  R+       HR  L   L
Sbjct: 61  DRLSG-------TGVTPKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSAL 113

Query: 114 ADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTK--------FLIGCDGIHS 165
            D   N         A + SQ   G+S      +  TI++T         +LI CDG+ S
Sbjct: 114 LDACRNNPGIEIKLGAEMTSQRQTGNS------ITATIIRTNSVETVSAAYLIACDGVWS 167

Query: 166 T 166
            
Sbjct: 168 M 168

Length = 400

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 62.6 bits (153), Expect = 5e-12
 Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 22/176 (12%)

Query: 7   DVVIIGAGIAGLATALALKRLG------VEPLVLEKSDGLRGTGAAISFAPNAWLALDAL 60
           D+VI+G G  GLA ALAL R G      +E   L             + +  +   L+ L
Sbjct: 1   DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSALSAASIRLLEKL 60

Query: 61  GVSHKLASI-YPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIH-------RKKLLQT 112
           GV  K+      P+  I V++ G+       L     +       +       ++ L + 
Sbjct: 61  GVWDKIEPARAQPIRDIHVSDGGSFGA----LHFDADEIGLEALGYVVENRVLQQALWER 116

Query: 113 LADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVA 168
           L +     TI   +++  +    H     V + L DG  ++ + L+G DG +S V 
Sbjct: 117 LQELPNRVTILCPARVVEL--PRHSDH--VELTLDDGQQLRARLLVGADGANSKVR 168

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 23/175 (13%)

Query: 7   DVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRGTGAA--------ISFAPNAWLAL 57
           DV+I+G G+ GL+ ALAL RLG ++  ++E +       AA        ++ +  +   L
Sbjct: 1   DVIIVGGGLVGLSLALALSRLGKIKIALIEANS----PSAAQPGFDARSLALSYGSKQIL 56

Query: 58  DALGVSHKLASIYPPVNRISVTNLG-TGATQETSLTGKFGD---GSGPRFIHRKKLLQTL 113
           + LG+  KLA    P+  I V++ G  GAT   +    FG    G         + L + 
Sbjct: 57  EKLGLWPKLAPFATPILDIHVSDQGHFGATHLRASE--FGLPALGYVVELADLGQALLSR 114

Query: 114 ADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVA 168
              L N  ++  ++   I    +     V + L +G  ++ K LI  DG +S V 
Sbjct: 115 LALLTNIQLYCPARYKEIIR--NQDY--VRVTLDNGQQLRAKLLIAADGANSKVR 165

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 50/167 (29%), Positives = 67/167 (40%), Gaps = 15/167 (8%)

Query: 8   VVIIGAGIAGLATALAL-KRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
           V IIG GIAG+A AL L K   +   + E +      GA +SF  NA  A+  LG    L
Sbjct: 3   VAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLG----L 58

Query: 67  ASIYPPV-NRIS-----VTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNG 120
              Y  V +        +       +  + L      G G   +HR   L  L   LP G
Sbjct: 59  GEAYTQVADSTPAPWQDIWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEG 118

Query: 121 TIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
              F  +   I+ Q    +  V +   DGT  +   LIG DGI S +
Sbjct: 119 IASFGKRATQIEEQ----AEEVQVLFTDGTEYRCDLLIGADGIKSAL 161

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Length = 414

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 46/176 (26%), Positives = 67/176 (38%), Gaps = 11/176 (6%)

Query: 5   EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSH 64
           E DV+I+G G AGL  AL L R GV  +++E+         A          L   G+  
Sbjct: 1   ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGL-- 58

Query: 65  KLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPR--FIHRKKLLQTLADELPN--G 120
               I           L    T        F   S PR     + +L   L +       
Sbjct: 59  -EDRILAEGAPHEGMGLAFYNTSRRRADLDF-LTSPPRVTVYPQTELEPILREHAEARGA 116

Query: 121 TIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI--VKTKFLIGCDGIHSTVAWWLGLS 174
            + F +++ ++  Q  DG + V     DG    V+ K+L+GCDG  S V   LG+ 
Sbjct: 117 QVRFGTEVLSL-EQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRKQLGIE 171

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 20/172 (11%)

Query: 7   DVVIIGAGIAGLATALALKRLG-------VEPLVLEKSDGLRGTGAAISFAPNAWLALDA 59
           DVVI G G  GLA A+ALK+         V+      +        A + A  A   L+A
Sbjct: 3   DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP---AGAWSRDPRASAIAAAARRMLEA 59

Query: 60  LGVSHKLASIYPPVNRISVTNLGTG-ATQETSLTGKF-GDGS-GPRFIH---RKKLLQTL 113
           LGV  ++A    P+  + +T+  T    +   LT  F G+   G  F H    + L+  L
Sbjct: 60  LGVWDEIAPEAQPITDMVITDSRTSDPVRPVFLT--FEGEVEPGEPFAHMVENRVLINAL 117

Query: 114 ADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165
                   I      +  D +T D    V + L DG++++ + L+  DG  S
Sbjct: 118 RKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLVAADGARS 167

Length = 403

>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 44/169 (26%), Positives = 57/169 (33%), Gaps = 15/169 (8%)

Query: 1   MAMVEK-DVVIIGAGIAGLATALALKRLGVEPLVLEKS-DGLRGTGAAISFAPNAWLALD 58
           M  +     V+IG  + GL  AL L+R G +  V E+S   L G GA I   P    AL 
Sbjct: 1   MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALA 60

Query: 59  ALGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP 118
             GV+   A I  P       +      Q   +                 L + L    P
Sbjct: 61  EAGVAL-PADIGVPSRERIYLDRDGRVVQRRPMP--------QTQTSWNVLYRALRAAFP 111

Query: 119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
               H    +   + Q  D    V     DG       L+G DG  STV
Sbjct: 112 AERYHLGETLVGFE-QDGDR---VTARFADGRRETADLLVGADGGRSTV 156

Length = 386

>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK 65
           K VV+ GA +AG A A  L R G    ++E+  GLR  G AI     A   L+ +G+   
Sbjct: 2   KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAA 61

Query: 66  LASIYPPVNRISVTNL-GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHF 124
                  +   S  +  G    ++T  T   G  + P      +LL+    EL  G    
Sbjct: 62  AQEHKTRIRGASFVDRDGNELFRDTESTPTGGPVNSPDI----ELLRDDLVELLYGATQP 117

Query: 125 SSKIAAIDSQT--HDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
           S +    DS +   D    V +        +   +IG DG+HS V
Sbjct: 118 SVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNV 162

Length = 372

>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 14/168 (8%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK 65
             V I GAGIAG   A  L+R G EP ++E++  LR  G  + F    +     +G++ +
Sbjct: 1   MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQ 60

Query: 66  LASIYPPVNRI-SVTNLG--TGATQETSLTGKFGDGSGPRF--IHRKKLLQTLADELPNG 120
           L      +  + SV   G         S     GD     F  + R  L   +   +   
Sbjct: 61  LREAGYQIEHVRSVDPTGRRKADLNVDSFRRMVGD----DFTSLPRGDLAAAIYTAIDGQ 116

Query: 121 T-IHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
               F   IA ID    +    V +    GT      +IG DG+HS V
Sbjct: 117 VETIFDDSIATID----EHRDGVRVTFERGTPRDFDLVIGADGLHSHV 160

Length = 391

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 3  MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISF 49
          M   DVV+IGAG+ GLA A  L R G++  VLEK+D  R  G A +F
Sbjct: 1  MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND--RVGGRARTF 45

Length = 487

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 50.7 bits (121), Expect = 8e-08
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 2  AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG-TGAAISFAPNAWLALDAL 60
            ++ DVVIIG GI GL+ A  L   G +  VLE  +   G  G         W +    
Sbjct: 1  MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGE 60

Query: 61 GVSHKLAS 68
               LA 
Sbjct: 61 LEVRPLAD 68

Length = 387

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSD-GLRGTGAA 46
          DVV+IG GI GL+TA  L R G+   +LE+ D     +G  
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRN 41

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 26/187 (13%)

Query: 3   MVEKDVVIIGAGIAGLATALALKRLG--------VEPLVLEKSDGLRGTGA-AISFAPNA 53
           M   DV+I+G G+AG   ALAL RL         +E     +SD   G  A AI+ A   
Sbjct: 1   MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA-FAPESDAHPGFDARAIALAAGT 59

Query: 54  WLALDALGVSHKLASIYPPVNRISVTNLG-TGATQETSLTGKFGDGSGPRFIHRKKL--- 109
              L  LGV   LA    P+  I V++ G  G  +  +      D   P   +  +L   
Sbjct: 60  CQQLARLGVWQALADCATPITHIHVSDRGHAGFVRLDA-----EDYGVPALGYVVELHDV 114

Query: 110 ---LQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST 166
              L  L D+ P  T+H  +++A +  +T        + L DG  +  + L+  DG HS 
Sbjct: 115 GQRLFALLDKAPGVTLHCPARVANV-ERTQGSVR---VTLDDGETLTGRLLVAADGSHSA 170

Query: 167 VAWWLGL 173
           +   LG+
Sbjct: 171 LREALGI 177

Length = 395

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEP-LVLEKSDGLRGT 43
                DV IIGAG +GLA A ALK+ GV   ++ EK D + GT
Sbjct: 4  GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT 47

Length = 443

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 52/207 (25%), Positives = 77/207 (37%), Gaps = 45/207 (21%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDA- 59
               E  V+I+G G  GLA AL L R GV+ +++E+ DG         F P A     A 
Sbjct: 3   ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTA-------FNPKA-NTTSAR 54

Query: 60  -------LGVSHK-----LASIYP------------PVNRISVTNLGTGATQETSLTGKF 95
                  LG++ +     L   YP             + R             T + G  
Sbjct: 55  SMEHFRRLGIADEVRSAGLPVDYPTDIAYFTRLTGYELARF--RLPSAREAI-TPVGGPD 111

Query: 96  GDGSGPRFIHR------KKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG 149
           G    P   HR      + +L   A   P  T+ +  ++   + Q  DG +     L  G
Sbjct: 112 GSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFE-QDADGVTATVEDLDGG 170

Query: 150 T--IVKTKFLIGCDGIHSTVAWWLGLS 174
               ++  +L+GCDG  S V   LG+S
Sbjct: 171 ESLTIRADYLVGCDGARSAVRRSLGIS 197

Length = 545

>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 4  VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA---AISFAPNAWLALDAL 60
             DVV++G+G  G+  ALA    G+EPL++EK D + G+ A    + + PN  L   A 
Sbjct: 5  ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAA- 63

Query: 61 GV--SHKLASIY 70
          GV  SH+ A  Y
Sbjct: 64 GVPDSHEDALAY 75

Length = 557

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 48.3 bits (116), Expect = 5e-07
 Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 48/192 (25%)

Query: 8   VVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA-AISFAPNAWLALDALGVSHKL 66
           VV++GAG  GLA A+ L + GV  ++L+  D L  TG+ AI FA  +    D LG   ++
Sbjct: 26  VVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL-STGSRAICFAKRSLEIFDRLGCGERM 84

Query: 67  ASIYPPVNRISVTNLGTGATQETSLT---GK--FGD----------GSG---PRFI---- 104
                                +  ++   GK    D            G   P FI    
Sbjct: 85  V--------------------DKGVSWNVGKVFLRDEEVYRFDLLPEPGHRRPAFINLQQ 124

Query: 105 -HRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI-VKTKFLIGCDG 162
            + +  L   A  LPN  + + +K+  +  + HD    + +   DG   ++  ++I CDG
Sbjct: 125 YYVEGYLVERAQALPNIDLRWKNKVTGL--EQHDDGVTLTVETPDGPYTLEADWVIACDG 182

Query: 163 IHSTVAWWLGLS 174
             S +   LGL 
Sbjct: 183 ARSPLREMLGLE 194

Length = 547

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 49/171 (28%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR--GTGAAISFAPNAWLALDALGVSH 64
           DVV++GAG AG + A  L   G+  L+LEK    R    G A+S  P A   LD  G   
Sbjct: 2   DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALS--PRALEELDLPGE-- 57

Query: 65  KLASIYPPVNRI--SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTI 122
                   VN +  +      G + E        + +    I R    + LA+       
Sbjct: 58  ------LIVNLVRGARFFSPNGDSVEIP---IETELAY--VIDRDAFDEQLAERAQEAGA 106

Query: 123 HFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGL 173
                   +D + HD    V I       V  K +IG DG  S VA  LGL
Sbjct: 107 ELRLGTRVLDVEIHDD-RVVVIVRGSEGTVTAKIVIGADGSRSIVAKKLGL 156

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 47.6 bits (114), Expect = 8e-07
 Identities = 53/195 (27%), Positives = 71/195 (36%), Gaps = 56/195 (28%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLG-----VEPLVLEKSDGLRGT---GAAISFAPN 52
           M     D+ +IG G AGLA A+AL R G     V P     +D LR T   G +I F   
Sbjct: 3   MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP-PYAD-LRTTALLGPSIRF--- 57

Query: 53  AWLALDALGVSHKLAS-----------------IYPPVNRISVTNLGTGATQETSLTGKF 95
               L+ LG+  +LA                  I  P  R     +G  A         F
Sbjct: 58  ----LERLGLWARLAPHAAPLQSMRIVDATGRLIRAPEVRFRAAEIGEDA---------F 104

Query: 96  GDGSGPRFIHRKKLLQTLAD---ELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIV 152
           G       I    L + L     ELPN T       +    +       V + L DGT +
Sbjct: 105 GYN-----IPNWLLNRALEARVAELPNITRFGDEAESVRPREDE-----VTVTLADGTTL 154

Query: 153 KTKFLIGCDGIHSTV 167
             + ++G DG +S V
Sbjct: 155 SARLVVGADGRNSPV 169

Length = 388

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 47.6 bits (114), Expect = 9e-07
 Identities = 17/37 (45%), Positives = 19/37 (51%)

Query: 2  AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
             +K VVIIGAG AGL  A  L + G    VLE   
Sbjct: 1  MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37

Length = 479

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 33/187 (17%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
           DV+I+GAG  GL  A+ L R GV   ++EK+             P      D LGV  ++
Sbjct: 5   DVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRV 64

Query: 67  A---SIYPPVNRISVTNLGTGATQETSLTGKFGDGS--------------GPRFIHRKKL 109
                +YPP+             +     G   +                 P  + + + 
Sbjct: 65  VAAGGLYPPM-------------RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRT 111

Query: 110 LQTLADELPN--GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
            + L + L      + F  ++   + Q  DG +           V+ ++L+G DG  S V
Sbjct: 112 ERILRERLAELGHRVEFGCELVGFE-QDADGVTARVAGPAGEETVRARYLVGADGGRSFV 170

Query: 168 AWWLGLS 174
              LG+ 
Sbjct: 171 RKALGIG 177

Length = 502

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 5   EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA 45
            +D  IIG GIAG A ALAL R G +  + E  +     GA
Sbjct: 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAP-AQGA 299

Length = 662

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKS 37
          DV+IIGAG  GLA A+  ++ G+  L++EK 
Sbjct: 1  DVIIIGAGPCGLACAIEAQKAGLSYLIIEKG 31

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT------GAAISFAPNAWLALD 58
          DVV+IG+G+AGLA AL     G++  V+EK     G       G      P     +D
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGID 58

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 3  MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
          M   DV+IIG G AGL  A+   R G++ +++ +     G
Sbjct: 1  MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGG 40

Length = 305

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 21/58 (36%), Positives = 28/58 (48%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALD 58
          M + E DVV+IG G AGL  A+     G++  +L K+   RG   A     NA L   
Sbjct: 2  MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNT 59

Length = 562

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS 48
          DVVIIG G AGLA A+ L RLG++  ++E+  G       + 
Sbjct: 1  DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLP 42

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 7  DVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGL 40
          D VIIG GI GL+TA+ L+    G    VLEK  G 
Sbjct: 4  DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39

Length = 393

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 10 IIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
          I+GAG++GL  A  L + G + LVLEK D + G
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGG 33

Length = 66

>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA 45
             +  DV++IG+G  GL+ A+  ++LG++ +VLEK     GT A
Sbjct: 5  TNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49

Length = 574

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 44.5 bits (106), Expect = 9e-06
 Identities = 19/43 (44%), Positives = 23/43 (53%)

Query: 8  VVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFA 50
          + I+G GIAGLA A  L + G E  V E  D L G  A+  F 
Sbjct: 2  IAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFG 44

Length = 434

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA 45
           + I+GAGIAGLA A AL+  G E  V EK  G+ G  A
Sbjct: 3  SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLA 41

Length = 331

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 3  MVEKDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGL 40
          M++ DVVIIG GI G ATA  L      +   +LEK DG+
Sbjct: 1  MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV 40

Length = 429

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 6  KDVVIIGAGIAGLATALALKRLG--VEPLVLEKSD 38
            + IIG GIAGL+ A  L++ G  VE  + E  D
Sbjct: 1  MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD 35

Length = 444

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEK 36
           VVIIGAG AGL+ +  LK+ G++ +VLEK
Sbjct: 2  PVVIIGAGQAGLSVSYYLKQAGIDHVVLEK 31

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 2   AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS 48
             V K V++IG G+AG+  AL L  +G +  ++EK   + G  A ++
Sbjct: 121 VEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167

Length = 622

>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 28/161 (17%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLA----LDALGV 62
           D+ +IG G AGLA AL L R G+   ++E    + G         + +      L  LG+
Sbjct: 1   DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG--------NHTYGVWDDDLSDLGL 52

Query: 63  SHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP-NGT 121
           +  +  ++P  +            Q   L      G+    +   +L + L  + P  G 
Sbjct: 53  ADCVEHVWP--DVYEY----RFPKQPRKL------GTAYGSVDSTRLHEELLQKCPEGGV 100

Query: 122 IHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG 162
           +    K    +    DG +   ++   G  ++ + +I   G
Sbjct: 101 LWLERKAIHAE---ADGVALSTVYCAGGQRIQARLVIDARG 138

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388

>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 51/189 (26%), Positives = 75/189 (39%), Gaps = 40/189 (21%)

Query: 1   MAMVEK-DVVIIGAGIAGLATALALKRLGVEPLVLEKS-DGL---RGTGAAISFAPNAWL 55
           MA VE  D  I+G G AG+   L L R GV+  VLEK  D L   RG     +  P+   
Sbjct: 1   MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGD----TVHPSTLE 56

Query: 56  ALDALGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGP-RFIH---RKKLLQ 111
            +D LG+  +   +  P  ++       G    T     F     P  +I    +   L 
Sbjct: 57  LMDELGLLERFLEL--PHQKVRTLRFEIG--GRTVTLADFSRLPTPYPYIAMMPQWDFLD 112

Query: 112 TLADE---LPNGTIHFSS----------KIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI 158
            LA+E    PN T+   +          ++  + ++T DG          G I +   ++
Sbjct: 113 FLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDG---------PGEI-RADLVV 162

Query: 159 GCDGIHSTV 167
           G DG HS V
Sbjct: 163 GADGRHSRV 171

Length = 407

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 62/199 (31%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLA---- 56
              ++ DVV++G G+ G + ALAL + G+   +L          A    A +AW +    
Sbjct: 1   AYHMKFDVVVVGGGLVGASLALALAQSGLRVALLA-------PRAPPRPADDAWDSRVYA 53

Query: 57  --------LDALGVSHKL-ASIYPPVNRISVTNLGTGATQETSLTGKFGDGSG------- 100
                   L+ LGV   L A+   PV  + V                FGD          
Sbjct: 54  ISPSSQAFLERLGVWQALDAARLAPVYDMRV----------------FGDAHARLHFSAY 97

Query: 101 ------------PRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD 148
                          I R  L   L  + PN T  F ++   ++           + L D
Sbjct: 98  QAGVPQLAWIVESSLIER-ALWAALRFQ-PNLTW-FPARAQGLEVD----PDAATLTLAD 150

Query: 149 GTIVKTKFLIGCDGIHSTV 167
           G +++   ++G DG HS V
Sbjct: 151 GQVLRADLVVGADGAHSWV 169

Length = 388

>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase

 Score = 42.0 bits (98), Expect = 8e-05
 Identities = 52/175 (29%), Positives = 73/175 (41%), Gaps = 23/175 (13%)

Query: 8   VVIIGAGIAGLATALALKRLGVEPLVLEKS-DGLRGTG---AAISFAPNAWLALDALG-- 61
           V++ G GI GL  ALA K+ G + LV EK    +RG G     I    NA  AL+A+   
Sbjct: 84  VLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDID 143

Query: 62  VSHKLAS--------IYPPVNRISVTNLGTGATQETSLTGKFGDG-SGPRFIHRKKLLQT 112
           V+ ++          I   V+ IS    G+   +  + T     G    R I R  L Q 
Sbjct: 144 VAEQVMEAGCITGDRINGLVDGIS----GSWYVKFDTFTPAASRGLPVTRVISRMTLQQI 199

Query: 113 LADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
           LA  +    I   S +   +    D    V + L +G   +   L+G DGI S V
Sbjct: 200 LARAVGEDVIRNESNVVDFE----DSGDKVTVVLENGQRYEGDLLVGADGIWSKV 250

Length = 668

>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 47/198 (23%), Positives = 64/198 (32%), Gaps = 51/198 (25%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
           DVVI+G G  GLA A AL      PL  +    L             +   D        
Sbjct: 2   DVVIVGGGPVGLALAAALGN---NPLTKDLKVLLLDAVDNPKLKSRNYEKPDG------- 51

Query: 67  ASIYPPVNRISVT---------NLGTGATQETSLTGKFG-----DGSGPRFIH--RKKLL 110
               P  NR+S            +G     ++     FG     DG     I   R    
Sbjct: 52  ----PYSNRVSSITPASISFFKKIGAWDHIQSDRIQPFGRMQVWDGCSLALIRFDRDNGK 107

Query: 111 QTLA---------DELPNGTIHFSSKIAAID------------SQTHDGSSPVFIHLVDG 149
           + +A         + L N    ++     I                +D S+ V I L DG
Sbjct: 108 EDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDG 167

Query: 150 TIVKTKFLIGCDGIHSTV 167
            ++ TK LIG DG +S V
Sbjct: 168 QVLYTKLLIGADGSNSNV 185

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone. Length = 437

>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD-GLRG 42
           +MV  DV++IG G A L  ALA +  G   L+LE +    RG
Sbjct: 2  ASMV--DVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRG 42

Length = 466

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 12/31 (38%), Positives = 22/31 (70%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKS 37
          D+V++GAG AGL+ A +L   G++  ++E+ 
Sbjct: 5  DIVVVGAGPAGLSFARSLAGSGLKVTLIERQ 35

Length = 392

>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 17/71 (23%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPL---VLEKSDGLR--------GTGAAI-- 47
          M +++ DVVI+G+G+AGL  A+A        L   V+ K+  +R        GT A +  
Sbjct: 1  MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYP 60

Query: 48 ----SFAPNAW 54
              SF  +A+
Sbjct: 61 EKGDSFDLHAY 71

Length = 577

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 8  VVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI 47
           V+IGAG  GLA A+ L   G+   V+E+ D   G    +
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVL 40

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 41/190 (21%)

Query: 7   DVVIIGAGIAGLATALALKRLG-----VEPLVLEKSDGLRGTGAAISFAPNAWLALDALG 61
           DV I+G GI GL  A ALK  G     +E    E +   +G   A+S    +    + +G
Sbjct: 20  DVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAA-KGQAYALSLL--SARIFEGIG 76

Query: 62  VSHKLA-SI------------YPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKK 108
           V  K+   I            YP V +   T+LGT A       G  G+       H+  
Sbjct: 77  VWEKILPQIGKFRQIRLSDADYPGVVKFQPTDLGTEA------LGYVGE-------HQ-V 122

Query: 109 LLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI-VKTKFLIGCDGIH 164
           LL+ L + L   PN T    +++ +++ Q    ++ V + +      +++K ++  DG  
Sbjct: 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQD--AATVTLEIEGKQQTLQSKLVVAADGAR 180

Query: 165 STVAWWLGLS 174
           S +    G+ 
Sbjct: 181 SPIRQAAGIK 190

Length = 415

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 32/186 (17%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
           DVVI+GAG  GL  A  L + GV  LVLE+   L     A+     A   L A+G++ ++
Sbjct: 12  DVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEV 71

Query: 67  ASIYPPVNRISVTNLG----TGATQ-----ETSLTGKFGDGSGPR--FIHRKKLLQTLAD 115
                     +  N G        +         TG+FG    PR    H+  L   L  
Sbjct: 72  L-------PHTTPNHGMRFLDAKGRCLAEIARPSTGEFG---WPRRNAFHQPLLEAVLRA 121

Query: 116 EL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT----IVKTKFLIGCDGIHSTVA 168
            L   P+  + F  ++ A+ +Q  DG   V + L D       V+ ++++GCDG +S V 
Sbjct: 122 GLARFPHVRVRFGHEVTAL-TQDDDG---VTVTLTDADGQRETVRARYVVGCDGANSFVR 177

Query: 169 WWLGLS 174
             LG+ 
Sbjct: 178 RTLGVP 183

Length = 500

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 3  MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43
          M E DVV+IGAG AG   A+   +LG++  ++EK + L GT
Sbjct: 2  MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGT 42

Length = 454

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI 47
            V I GAG+AGLA A  L   G +  + E  D L G  A+ 
Sbjct: 1  MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW 42

Length = 485

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 17/38 (44%), Positives = 20/38 (52%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43
           K V +IGAG AGLA A  L R G    V E+ +   G 
Sbjct: 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGV 577

Length = 1019

>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 28/181 (15%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDAL 60
           M+    DVVIIGAG  GL  A   +  G+  ++++KSDG    G A   A NA   L  L
Sbjct: 1   MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRAD--ALNA-RTLQLL 57

Query: 61  GVSHKLASIYP---PVNRISVTNLGTGATQETS----LTGKFGDGSGPRFIHRKKLL--- 110
            +      +YP   P N  SV   G   ++++S    L G           H+  L+   
Sbjct: 58  ELVDLFDELYPLGKPCNTSSVWANGKFISRQSSWWEELEGCL---------HKHFLMLGQ 108

Query: 111 ----QTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST 166
               + L D+L           + ++ + +         L +G  ++++++IG DG  S 
Sbjct: 109 SYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGSRSF 166

Query: 167 V 167
           V
Sbjct: 167 V 167

Length = 487

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 21/39 (53%), Positives = 26/39 (66%)

Query: 8   VVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA 46
           VVI GAG+AGL+TA  L   G +P++LE  D L G  AA
Sbjct: 96  VVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAA 134

Length = 567

>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 7  DVVIIGAGIAGLATALALKRLGV-EPLVLEK 36
          DVV++G+G AGL+ AL+ K+ G    ++LEK
Sbjct: 1  DVVVVGSGFAGLSAALSAKKAGAANVVLLEK 31

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton [Energy metabolism, Electron transport]. Length = 439

>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          DVV++G+G+AGL  ALA +R G   LV+ K+ 
Sbjct: 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49

Length = 541

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA 46
          DVV++G G AG+A A+A  RLG + L++E+   L G   +
Sbjct: 1  DVVVVGGGPAGVAAAIAAARLGAKVLLVERRGWLGGMATS 40

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS 48
          E DVV++G G AG   A+     G   LVLE++ G  G   A+S
Sbjct: 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA-TALS 62

Length = 492

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39
          DV++IG G+AGL  ALA    G    ++ K  G
Sbjct: 4  DVLVIGGGLAGLTAALAAAEAGKRVALVAKGQG 36

Length = 422

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
            A   KDVV++GAG  GL  A A  + G +  ++E +D L G
Sbjct: 132 GAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173

Length = 415

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD---GL 40
           K V ++G+G AGLA A  L R G +  V E++D   GL
Sbjct: 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGL 181

Length = 471

>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
          D++I+GAGI GLA A A  R G+   V+E+S   +G
Sbjct: 2  DLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQG 37

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 6  KDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRG 42
          K V IIG GI GL+ A  L + G   +  +LE SD L G
Sbjct: 1  KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39

Length = 451

>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA 45
          E DV++IG+G AGL+ A+     G++ +V+EK     GT A
Sbjct: 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52

Length = 581

>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
           DV+IIG+G+AGL  AL+L        VL K  
Sbjct: 8  PDVLIIGSGLAGLTAALSLAP-SFRVTVLTKGP 39

Length = 518

>gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 13/176 (7%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA-----ISFAPNAWLALDAL 60
           +D VI+G G+ G A ALAL   G+   ++E  +  R           +FA +    LD L
Sbjct: 7   RDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL 66

Query: 61  GV-SHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPN 119
           GV     A+   P  R+ V + G G  +        G       +    L+  L   L  
Sbjct: 67  GVWPAVRAARAQPYRRMRVWDAG-GGGELGFDADTLGREQLGWIVENDLLVDRLWAALHA 125

Query: 120 GTI--HFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGL 173
             +  H  +++ A++ Q  D    V + L DG  ++    I  DG  ST+    GL
Sbjct: 126 AGVQLHCPARVVALE-QDADR---VRLRLDDGRRLEAALAIAADGAASTLRELAGL 177

Length = 392

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 15 IAGLATALALKRLGVEPLVLEKSDGLRG-------------TGAAISFA--PNAWLALDA 59
          +AGLA A  L R G +  VLE  D + G              GA       PN    L  
Sbjct: 1  LAGLAAARELLRAGFDVTVLEARDRVGGRIRTVRFDGFLIELGAQWFHGAYPNLLNLLLE 60

Query: 60 LGVSHKL 66
          LG+   L
Sbjct: 61 LGLELGL 67

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          DV+IIGAG AGL  A+   R  ++PL++E  +
Sbjct: 1  DVIIIGAGPAGLTAAIYAARANLKPLLIEGGE 32

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 6  KDVVIIGAGIAGLATALALKR----LGVEPLVLEKSDGLRGT 43
          K VVIIG GI+GL  A  L++    L VE  ++E SD + G 
Sbjct: 3  KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44

This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462

>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 16/39 (41%), Positives = 28/39 (71%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA 45
          DV++IGAG AG++ AL     G++ L++E+++ + GT A
Sbjct: 18 DVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56

Length = 578

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 16/75 (21%)

Query: 8  VVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG--------------TGAAISFA--P 51
          V I GAG+AGL+ A  L   G  P+VLE  D L G              TG  I F   P
Sbjct: 2  VAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYP 61

Query: 52 NAWLALDALGVSHKL 66
          N    L  L +  +L
Sbjct: 62 NMLQLLKELNIEDRL 76

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 28/191 (14%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
           D +I+GAG+AG   AL L R G + LV+E     RG  A         L       +H L
Sbjct: 7   DAIIVGAGLAGSVAALVLAREGAQVLVIE-----RGNSAGAKNVTGGRL------YAHSL 55

Query: 67  ASIYP------PVNRISVTNLGTGATQETSLTGKFGDGS------GPRFIHRKKLLQTLA 114
             I P      PV R+         T+++++T  + +G           + R K    L 
Sbjct: 56  EHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLM 115

Query: 115 DELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLS 174
           ++         + I   +    DG   V     DG +++ K +I  DG++S +A  LG++
Sbjct: 116 EQAEEAGAQLITGIRVDNLVQRDGK--VVGVEADGDVIEAKTVILADGVNSILAEKLGMA 173

Query: 175 ---EPLNVNIG 182
              +P +V +G
Sbjct: 174 KRVKPTDVAVG 184

Length = 428

>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 2  AMVEKDVVIIGAGIAGLATALALK-RLGVEPLVLEKSD 38
          A   KDV ++GAG++GLA A AL  + GV  LV E  D
Sbjct: 9  AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARD 46

Length = 496

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 8  VVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
          V++IG GIAG+A A AL     +  +LE  D + G
Sbjct: 3  VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37

Length = 435

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD--GLRGTGA 45
           DV+I+GAG+AGL+ A  LK+ G +  +LE  D  G R   A
Sbjct: 8  ADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTA 49

Length = 450

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 38.2 bits (90), Expect = 0.001
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40
           K + +IG G+ GL    AL RLGV+  V E+ D +
Sbjct: 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204

Length = 460

>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          + M E DV++IG GI G   A      G++  ++EK D
Sbjct: 8  LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGD 45

Length = 532

>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 7  DVVIIGAGIAGLATALALKRLGV 29
          DV++IG G AG   ALA  R+G 
Sbjct: 1  DVIVIGGGHAGCEAALAAARMGA 23

Length = 391

>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 4   VEKDVVIIGAGIAGLATALALKRLGVEPLVLEK 36
            +K V IIGAG AGLA A  L R GV   V ++
Sbjct: 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDR 358

Length = 654

>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit; Validated

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 15/30 (50%), Positives = 23/30 (76%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEK 36
          D+VI+GAG AG++ A+  K  G+ P++LEK
Sbjct: 63 DIVIVGAGGAGMSAAIEAKDAGMNPVILEK 92

Length = 506

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 3  MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40
          M   DV+IIG G AGL  A++  + G   L+++K   L
Sbjct: 1  MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKL 38

Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PRK07190	487	hypothetical protein; Provisional	99.95
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.95
PRK08013	400	oxidoreductase; Provisional	99.95
PRK06753	373	hypothetical protein; Provisional	99.95
PRK06184	502	hypothetical protein; Provisional	99.95
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.95
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.94
PRK08163	396	salicylate hydroxylase; Provisional	99.94
PRK07588	391	hypothetical protein; Provisional	99.94
PRK06475	400	salicylate hydroxylase; Provisional	99.94
PRK07045	388	putative monooxygenase; Reviewed	99.94
PRK05868	372	hypothetical protein; Validated	99.94
PRK06847	375	hypothetical protein; Provisional	99.94
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.94
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.94
PRK06185	407	hypothetical protein; Provisional	99.94
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.94
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.94
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.93
PRK08244	493	hypothetical protein; Provisional	99.93
PRK08294	634	phenol 2-monooxygenase; Provisional	99.93
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.93
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.93
PRK07236	386	hypothetical protein; Provisional	99.93
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.93
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.93
PRK06834	488	hypothetical protein; Provisional	99.93
PRK07538	413	hypothetical protein; Provisional	99.93
PRK06126	545	hypothetical protein; Provisional	99.93
PRK09126	392	hypothetical protein; Provisional	99.93
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.93
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.93
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.92
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.92
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.92
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.92
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	99.92
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.92
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.91
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.9
PRK10157	428	putative oxidoreductase FixC; Provisional	99.9
PRK06996	398	hypothetical protein; Provisional	99.9
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.89
PTZ00367	567	squalene epoxidase; Provisional	99.89
PLN02985	514	squalene monooxygenase	99.89
PRK10015	429	oxidoreductase; Provisional	99.89
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.88
PRK11445	351	putative oxidoreductase; Provisional	99.87
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.87
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.87
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.85
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.84
COG2081	408	Predicted flavoproteins [General function predicti	99.83
COG0579	429	Predicted dehydrogenase [General function predicti	99.8
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.78
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.77
PLN02463	447	lycopene beta cyclase	99.75
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.73
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.73
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.73
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.72
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.72
PLN02697	529	lycopene epsilon cyclase	99.71
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.71
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.71
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.7
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.7
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.7
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.7
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.69
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.69
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.69
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.68
PRK05257	494	malate:quinone oxidoreductase; Validated	99.68
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.68
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.67
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.66
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.64
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.64
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.64
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.63
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.63
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.63
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.62
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.62
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.62
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.61
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.61
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.59
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.58
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.57
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.57
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.55
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.55
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.54
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.54
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.54
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.53
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.52
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.5
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.5
PRK08274	466	tricarballylate dehydrogenase; Validated	99.49
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.48
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.48
PLN02661	357	Putative thiazole synthesis	99.48
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.48
KOG2853	509	consensus Possible oxidoreductase [General functio	99.47
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.47
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.47
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.47
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.46
PRK06175	433	L-aspartate oxidase; Provisional	99.46
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.46
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.46
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.46
PRK07121	492	hypothetical protein; Validated	99.45
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.45
PRK07804	541	L-aspartate oxidase; Provisional	99.43
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.42
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.42
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.41
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.41
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	99.4
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.4
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.4
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.39
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.39
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.39
PRK08071	510	L-aspartate oxidase; Provisional	99.39
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.39
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.39
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.38
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.38
PRK08401	466	L-aspartate oxidase; Provisional	99.38
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.38
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.37
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.37
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.36
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.36
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.36
PRK14694	468	putative mercuric reductase; Provisional	99.36
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.36
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.35
PLN02815	594	L-aspartate oxidase	99.35
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.34
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.34
PRK10262	321	thioredoxin reductase; Provisional	99.34
PRK08275	554	putative oxidoreductase; Provisional	99.33
PRK06370	463	mercuric reductase; Validated	99.33
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.33
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.33
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.32
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.32
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.32
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.3
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.3
PRK09897	534	hypothetical protein; Provisional	99.29
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.29
PRK07395	553	L-aspartate oxidase; Provisional	99.29
PLN02507	499	glutathione reductase	99.27
PRK06116	450	glutathione reductase; Validated	99.27
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.27
PLN02568	539	polyamine oxidase	99.27
PRK12839	572	hypothetical protein; Provisional	99.27
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.26
PRK07512	513	L-aspartate oxidase; Provisional	99.26
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.26
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.26
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.25
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.25
PRK09077	536	L-aspartate oxidase; Provisional	99.25
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.25
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.24
PRK13748	561	putative mercuric reductase; Provisional	99.24
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	99.24
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.23
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.23
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.23
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.21
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.21
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.21
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.21
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.2
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.19
PLN02268	435	probable polyamine oxidase	99.17
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.17
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.17
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.16
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.16
PRK07233	434	hypothetical protein; Provisional	99.16
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.15
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	99.15
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.15
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.15
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.15
PRK14727	479	putative mercuric reductase; Provisional	99.14
PLN02676	487	polyamine oxidase	99.14
PTZ00058	561	glutathione reductase; Provisional	99.13
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	99.13
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.12
PLN02546	558	glutathione reductase	99.12
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.11
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.1
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.09
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.08
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	99.08
TIGR02053	463	MerA mercuric reductase. This model represents the	99.06
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.03
PTZ00052	499	thioredoxin reductase; Provisional	99.03
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.03
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.02
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.01
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.01
PRK12831	464	putative oxidoreductase; Provisional	99.01
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.99
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.99
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.99
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.98
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.97
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.96
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.96
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.96
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.96
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.95
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.95
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.94
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.94
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.93
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.93
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.93
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.92
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.91
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.9
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.9
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.89
PRK07208	479	hypothetical protein; Provisional	98.89
PRK07846	451	mycothione reductase; Reviewed	98.88
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.88
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.87
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.87
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.86
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.86
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.84
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.84
PRK07846	451	mycothione reductase; Reviewed	98.84
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.83
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	98.82
PRK06116	450	glutathione reductase; Validated	98.79
PLN02576	496	protoporphyrinogen oxidase	98.78
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.76
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.76
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.75
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.75
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.75
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.74
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.74
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.74
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.74
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.74
PLN02507	499	glutathione reductase	98.74
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.74
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.73
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.72
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.72
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.72
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.72
TIGR02053	463	MerA mercuric reductase. This model represents the	98.72
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.71
KOG2852	380	consensus Possible oxidoreductase [General functio	98.71
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.7
COG3573	552	Predicted oxidoreductase [General function predict	98.7
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.69
PRK06370	463	mercuric reductase; Validated	98.69
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.67
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.67
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.66
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.65
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.65
COG3349	485	Uncharacterized conserved protein [Function unknow	98.64
PRK14727	479	putative mercuric reductase; Provisional	98.64
PRK14694	468	putative mercuric reductase; Provisional	98.64
PTZ00052	499	thioredoxin reductase; Provisional	98.64
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.63
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.62
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.61
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.61
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.61
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.61
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.6
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.59
PRK02106	560	choline dehydrogenase; Validated	98.58
PLN02612	567	phytoene desaturase	98.57
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.57
PRK13748	561	putative mercuric reductase; Provisional	98.57
PLN02487	569	zeta-carotene desaturase	98.56
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	98.55
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.54
PTZ00058	561	glutathione reductase; Provisional	98.53
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.5
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.49
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.46
PLN02852	491	ferredoxin-NADP+ reductase	98.46
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.45
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.44
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.44
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.43
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.42
PRK10262	321	thioredoxin reductase; Provisional	98.42
PLN02546	558	glutathione reductase	98.41
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.39
PLN02529	738	lysine-specific histone demethylase 1	98.39
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.38
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.38
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.37
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	98.36
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.34
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.33
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.33
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.33
PTZ00188	506	adrenodoxin reductase; Provisional	98.32
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	98.31
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.31
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.3
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.3
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.3
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.3
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.28
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	98.28
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	98.28
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.25
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.23
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.19
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.16
PLN03000	881	amine oxidase	98.16
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.14
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.14
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.13
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.11
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.09
PLN02976	1713	amine oxidase	98.09
PLN02785	587	Protein HOTHEAD	98.09
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.09
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.06
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.01
PRK13984	604	putative oxidoreductase; Provisional	98.0
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.95
PRK12831	464	putative oxidoreductase; Provisional	97.91
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.89
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.89
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.87
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.82
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.81
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.8
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.76
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	97.74
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.7
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.69
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.67
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.64
KOG2755	334	consensus Oxidoreductase [General function predict	97.61
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.61
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	97.6
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	97.57
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.54
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.5
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.5
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.46
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.44
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.44
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.43
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.43
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.42
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.41
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.36
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.35
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.32
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.31
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.3
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.3
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.19
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.18
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.17
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.15
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.12
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.1
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.1
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.09
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.09
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.08
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.03
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.02
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.01
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.98
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.97
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.95
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.94
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.93
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.92
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.92
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.91
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.89
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.86
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.86
PRK13984	604	putative oxidoreductase; Provisional	96.84
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.81
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	96.8
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.78
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.78
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.76
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.75
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.75
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.74
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.73
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.73
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	96.71
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	96.71
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.69
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.69
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.69
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.67
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.66
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.61
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.61
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.59
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.57
PRK08328	231	hypothetical protein; Provisional	96.56
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.55
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.55
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	96.51
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.49
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.47
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.46
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.46
PRK04148	134	hypothetical protein; Provisional	96.44
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.43
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.41
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.41
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.41
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.4
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.4
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	96.39
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.36
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.34
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.34
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.32
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.32
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.3
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.29
PRK08223	287	hypothetical protein; Validated	96.29
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.28
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.24
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.22
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.21
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.17
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.16
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.12
PLN02240	352	UDP-glucose 4-epimerase	96.11
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.11
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.09
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.08
PLN02602	350	lactate dehydrogenase	96.04
PRK07417	279	arogenate dehydrogenase; Reviewed	96.03
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.02
PRK06153	393	hypothetical protein; Provisional	96.01
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.99
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.98
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.97
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.97
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.96
PRK06223	307	malate dehydrogenase; Reviewed	95.96
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	95.95
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.95
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	95.86
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.85
PRK10669	558	putative cation:proton antiport protein; Provision	95.83
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	95.83
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.82
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.81
PRK11730	715	fadB multifunctional fatty acid oxidation complex	95.8
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.79
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.77
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.76
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.75
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	95.75
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.74
PLN02612	567	phytoene desaturase	95.74
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.74
PRK08264	238	short chain dehydrogenase; Validated	95.74
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.74
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.73
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.72
PRK09496	453	trkA potassium transporter peripheral membrane com	95.72
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.71
PRK07326	237	short chain dehydrogenase; Provisional	95.71
PRK07411	390	hypothetical protein; Validated	95.71
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.71
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.7

>PRK07190 hypothetical protein; Provisional

Probab=99.95  E-value=2.5e-26  Score=174.98  Aligned_cols=174  Identities=22%  Similarity=0.292  Sum_probs=132.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |+...+||+||||||+|+++|+.|+++|++|+||||.+.+...+++..+.+.+.+.++.+|+++.+.....+......+.
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~   80 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA   80 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence            88788999999999999999999999999999999998887788999999999999999999999877665555443333


Q ss_pred             cCCCceeeee-cCCCC-CCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042           81 LGTGATQETS-LTGKF-GDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKF  156 (184)
Q Consensus        81 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~  156 (184)
                      .......... +.... ...+....+....+.+.|.+.+.  +++++++++|++++.++   ++ +.+.+.+|++++|++
T Consensus        81 ~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~---~~-v~v~~~~g~~v~a~~  156 (487)
T PRK07190         81 NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ---AG-CLTTLSNGERIQSRY  156 (487)
T ss_pred             CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC---Ce-eEEEECCCcEEEeCE
Confidence            1111000000 11110 11123345566677777776653  89999999999998876   44 666677788999999


Q ss_pred             EEecCCcchHHHhhhCCCCCcc
Q 030042          157 LIGCDGIHSTVAWWLGLSEPLN  178 (184)
Q Consensus       157 vI~a~G~~s~~~~~~~~~~~~~  178 (184)
                      ||+|+|.+|.+|+.+|++.+..
T Consensus       157 vVgADG~~S~vR~~lgi~f~g~  178 (487)
T PRK07190        157 VIGADGSRSFVRNHFNVPFEII  178 (487)
T ss_pred             EEECCCCCHHHHHHcCCCcccc
Confidence            9999999999999999887643

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.95  E-value=5.9e-26  Score=168.59  Aligned_cols=162  Identities=19%  Similarity=0.238  Sum_probs=129.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC----CCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL----RGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      +||+||||||+|+++|+.|++.|++|+|+|+.+..    ...+++..+.+.+.+.|+.+|+|+.+.....+...+.+++.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   81 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN   81 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence            79999999999999999999999999999987432    23478999999999999999999998877777777777664


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI  158 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI  158 (184)
                      .......+...   ......+.+.+..|.+.|.+.+.   +++++++++++++...+   +. +.+.+.++ +++||+||
T Consensus        82 ~g~~~~~~~~~---~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~~-v~v~~~~~-~~~adlvI  153 (374)
T PRK06617         82 KASEILDLRND---ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN---DY-SIIKFDDK-QIKCNLLI  153 (374)
T ss_pred             CCceEEEecCC---CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC---Ce-EEEEEcCC-EEeeCEEE
Confidence            43322222221   11123468899999999998774   47889999999998765   44 77777776 89999999


Q ss_pred             ecCCcchHHHhhhCCCC
Q 030042          159 GCDGIHSTVAWWLGLSE  175 (184)
Q Consensus       159 ~a~G~~s~~~~~~~~~~  175 (184)
                      +|||.+|.+|+.++.+.
T Consensus       154 gADG~~S~vR~~l~~~~  170 (374)
T PRK06617        154 ICDGANSKVRSHYFANE  170 (374)
T ss_pred             EeCCCCchhHHhcCCCc
Confidence            99999999999987665

>PRK08013 oxidoreductase; Provisional

Probab=99.95  E-value=7.7e-26  Score=169.33  Aligned_cols=167  Identities=20%  Similarity=0.219  Sum_probs=130.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC------ccceeeecccHHHHHHHcCChHHHHhc-CCCccc
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG------TGAAISFAPNAWLALDALGVSHKLASI-YPPVNR   75 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   75 (184)
                      |.++||+||||||+|+++|+.|++.|++|+|+|+.+.+..      ..++..+.+.+.+.|+++|+++.+... ..+...
T Consensus         1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~   80 (400)
T PRK08013          1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHG   80 (400)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence            3469999999999999999999999999999999876432      125667889999999999999998764 456677


Q ss_pred             eEEEecCCCceeeeecCCCCCCCC--CCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCc
Q 030042           76 ISVTNLGTGATQETSLTGKFGDGS--GPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT  150 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~  150 (184)
                      +.++.....  ....+.... .+.  ..+.+.+..+.+.|.+.+.   +++++++++|++++.++   +. +.+.+.+|+
T Consensus        81 ~~~~~~~~~--~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~---~~-v~v~~~~g~  153 (400)
T PRK08013         81 MEVWDKDSF--GRIAFDDQS-MGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE---NE-AFLTLKDGS  153 (400)
T ss_pred             EEEEeCCCC--ceEEEcccc-cCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC---Ce-EEEEEcCCC
Confidence            776654321  122222111 122  2357889999999988763   68999999999998765   44 778888899


Q ss_pred             EEEeeEEEecCCcchHHHhhhCCCCC
Q 030042          151 IVKTKFLIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       151 ~~~a~~vI~a~G~~s~~~~~~~~~~~  176 (184)
                      +++||+||+|||.+|.+|+.++++.+
T Consensus       154 ~i~a~lvVgADG~~S~vR~~~~~~~~  179 (400)
T PRK08013        154 MLTARLVVGADGANSWLRNKADIPLT  179 (400)
T ss_pred             EEEeeEEEEeCCCCcHHHHHcCCCcc
Confidence            99999999999999999999988754

>PRK06753 hypothetical protein; Provisional

Probab=99.95  E-value=7.5e-26  Score=168.14  Aligned_cols=168  Identities=24%  Similarity=0.344  Sum_probs=137.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCce
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGAT   86 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (184)
                      ||+||||||+|+++|+.|++.|++|+|+|+.+.+...++++.+.+.+.+.++.+|+++.+.....+...+.+++......
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            89999999999999999999999999999999887788999999999999999999999888777777777776543322


Q ss_pred             eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042           87 QETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      ....+.    .+.....++|..|.+.|.+.+++.+++++++|++++..+   +. +.+.+.+|+++.+|+||+|+|.+|.
T Consensus        82 ~~~~~~----~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         82 NKVKLK----SNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENET---DK-VTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             eecccc----cCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecC---Cc-EEEEECCCCEEecCEEEECCCcchH
Confidence            222221    223345789999999999998777899999999998664   44 7888889989999999999999999


Q ss_pred             HHhhhCCCC-Cccccee
Q 030042          167 VAWWLGLSE-PLNVNIG  182 (184)
Q Consensus       167 ~~~~~~~~~-~~~~~~~  182 (184)
                      +|+.++... +.+.++.
T Consensus       154 vR~~~~~~~~~~~~g~~  170 (373)
T PRK06753        154 VRQSVNADSKVRYQGYT  170 (373)
T ss_pred             HHHHhCCCCCceEcceE
Confidence            999886543 4444443

>PRK06184 hypothetical protein; Provisional

Probab=99.95  E-value=8.5e-26  Score=173.47  Aligned_cols=170  Identities=21%  Similarity=0.300  Sum_probs=130.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.+++++.++.+|+++++.+...+......+....
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~   81 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDG   81 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCc
Confidence            46899999999999999999999999999999998887778999999999999999999999988776666555544322


Q ss_pred             CceeeeecCCC-----CCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE---ecCcEEE
Q 030042           84 GATQETSLTGK-----FGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL---VDGTIVK  153 (184)
Q Consensus        84 ~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~---~~g~~~~  153 (184)
                       ......+...     ....+....+.+..+.+.|.+.+.  ++++++++++++++.++   +. +.+.+   .++++++
T Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~---~~-v~v~~~~~~~~~~i~  156 (502)
T PRK06184         82 -SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA---DG-VTARVAGPAGEETVR  156 (502)
T ss_pred             -eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC---Cc-EEEEEEeCCCeEEEE
Confidence             1111211110     011123346677778777777764  78999999999998775   33 55555   4557899


Q ss_pred             eeEEEecCCcchHHHhhhCCCCCcc
Q 030042          154 TKFLIGCDGIHSTVAWWLGLSEPLN  178 (184)
Q Consensus       154 a~~vI~a~G~~s~~~~~~~~~~~~~  178 (184)
                      ||+||+|+|.+|.+|+.++++.+..
T Consensus       157 a~~vVgADG~~S~vR~~lgi~~~g~  181 (502)
T PRK06184        157 ARYLVGADGGRSFVRKALGIGFPGE  181 (502)
T ss_pred             eCEEEECCCCchHHHHhCCCCcccC
Confidence            9999999999999999998776543

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.95  E-value=1.5e-25  Score=167.01  Aligned_cols=163  Identities=32%  Similarity=0.451  Sum_probs=132.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc-CCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS-DGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .+||+||||||+|+++|+.|++.|++|+|+|+. ......+++..+.+.+++.|+++|+++.+.....+......++...
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            579999999999999999999999999999998 4556677999999999999999999888877666555555555433


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEe-cCcEEEeeEEEe
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLV-DGTIVKTKFLIG  159 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-~g~~~~a~~vI~  159 (184)
                      .....++...... +.....+.+..+.+.|.+.+.   +++++++++|+.++.++   +. +.+... +|++++||+||+
T Consensus        82 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~---~~-v~v~l~~dG~~~~a~llVg  156 (387)
T COG0654          82 RRLLIFDAAELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG---DG-VTVTLSFDGETLDADLLVG  156 (387)
T ss_pred             ceeEEecccccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC---Cc-eEEEEcCCCcEEecCEEEE
Confidence            3223333333222 445678999999999999884   48999999999999886   33 556666 999999999999


Q ss_pred             cCCcchHHHhhhC
Q 030042          160 CDGIHSTVAWWLG  172 (184)
Q Consensus       160 a~G~~s~~~~~~~  172 (184)
                      |||.+|.+|+.++
T Consensus       157 ADG~~S~vR~~~~  169 (387)
T COG0654         157 ADGANSAVRRAAG  169 (387)
T ss_pred             CCCCchHHHHhcC
Confidence            9999999999999

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.94  E-value=1.2e-25  Score=173.89  Aligned_cols=170  Identities=27%  Similarity=0.392  Sum_probs=132.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      +.++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.+++++.++.+|+++++.....+...+.+.+..
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   87 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK   87 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence            34789999999999999999999999999999999888888899999999999999999999998877766666666533


Q ss_pred             CCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEe--cC--cEEEe
Q 030042           83 TGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLV--DG--TIVKT  154 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~--~g--~~~~a  154 (184)
                      ......+........++ ....+++..+.+.|.+.+   ++++++++++|++++.++   ++ +.+.+.  +|  ++++|
T Consensus        88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~---~~-v~v~~~~~~G~~~~i~a  163 (538)
T PRK06183         88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD---DG-VTVTLTDADGQRETVRA  163 (538)
T ss_pred             CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC---Ce-EEEEEEcCCCCEEEEEE
Confidence            32223333211111222 334567777888877765   378999999999999876   44 666654  56  47999


Q ss_pred             eEEEecCCcchHHHhhhCCCCC
Q 030042          155 KFLIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       155 ~~vI~a~G~~s~~~~~~~~~~~  176 (184)
                      |+||+|||.+|.+|+.+++..+
T Consensus       164 d~vVgADG~~S~vR~~lg~~~~  185 (538)
T PRK06183        164 RYVVGCDGANSFVRRTLGVPFE  185 (538)
T ss_pred             EEEEecCCCchhHHHHcCCeee
Confidence            9999999999999999987654

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.94  E-value=1.9e-25  Score=167.21  Aligned_cols=175  Identities=29%  Similarity=0.378  Sum_probs=137.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |+ +..||+|||||++|+++|..|++.|++|+|+||.+.+...++++.+.+.+.+.++.+|+++.+.........+.+..
T Consensus         1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~   79 (396)
T PRK08163          1 MT-KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD   79 (396)
T ss_pred             CC-CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence            66 46899999999999999999999999999999998888888999999999999999999999887776667776665


Q ss_pred             cCCCce-eeeecCCC--CCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042           81 LGTGAT-QETSLTGK--FGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKT  154 (184)
Q Consensus        81 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a  154 (184)
                      ...+.. ....+...  ...+.....+++.++.+.|.+.+.   +++++++++++++...+   +. +.+.+.+|+++.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~~-v~v~~~~g~~~~a  155 (396)
T PRK08163         80 AVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG---DG-VTVFDQQGNRWTG  155 (396)
T ss_pred             CCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC---Cc-eEEEEcCCCEEec
Confidence            433322 23322211  112233457899999999988774   48899999999998764   44 7788888888999


Q ss_pred             eEEEecCCcchHHHhhh-CCCCCcccce
Q 030042          155 KFLIGCDGIHSTVAWWL-GLSEPLNVNI  181 (184)
Q Consensus       155 ~~vI~a~G~~s~~~~~~-~~~~~~~~~~  181 (184)
                      |+||+|+|.+|.+|+.+ +. .+.+.++
T Consensus       156 d~vV~AdG~~S~~r~~~~g~-~~~~~g~  182 (396)
T PRK08163        156 DALIGCDGVKSVVRQSLVGD-APRVTGH  182 (396)
T ss_pred             CEEEECCCcChHHHhhccCC-CCCcccc
Confidence            99999999999998876 43 3444443

>PRK07588 hypothetical protein; Provisional

Probab=99.94  E-value=1.6e-25  Score=167.26  Aligned_cols=162  Identities=24%  Similarity=0.337  Sum_probs=132.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .||+|||||++|+++|+.|+++|++|+|+|+.+.....++++.+.+.+.+.++++|+++.+.....+...+.++......
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~   80 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR   80 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence            38999999999999999999999999999999877667788889999999999999999998887777777777644332


Q ss_pred             eeeeecCCCC-CCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042           86 TQETSLTGKF-GDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        86 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                      ...+.+.... ..+.....+.+..|.+.|.+..+ +++++++++|++++..+   +. +.|.+++|+++++|+||+|+|.
T Consensus        81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~~d~vIgADG~  156 (391)
T PRK07588         81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHR---DG-VRVTFERGTPRDFDLVIGADGL  156 (391)
T ss_pred             EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECC---Ce-EEEEECCCCEEEeCEEEECCCC
Confidence            2333322211 12224457889999999888766 58999999999998765   44 7888899988999999999999


Q ss_pred             chHHHhhh
Q 030042          164 HSTVAWWL  171 (184)
Q Consensus       164 ~s~~~~~~  171 (184)
                      +|.+|+.+
T Consensus       157 ~S~vR~~~  164 (391)
T PRK07588        157 HSHVRRLV  164 (391)
T ss_pred             Cccchhhc
Confidence            99999865

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.94  E-value=2.1e-25  Score=167.06  Aligned_cols=174  Identities=24%  Similarity=0.290  Sum_probs=132.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      -+|+|||||++|+++|+.|+++|++|+|+|+.+.+...++++.+.+.+.+.|+.+|+++++.........+.+.......
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            58999999999999999999999999999999887788899999999999999999999998766555544443321111


Q ss_pred             e-eeeecCCC--CCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEE---ecCcEEEeeE
Q 030042           86 T-QETSLTGK--FGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHL---VDGTIVKTKF  156 (184)
Q Consensus        86 ~-~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~---~~g~~~~a~~  156 (184)
                      . ........  ..++.....+++.+|.+.|.+.+.   +++++++++|++++..+   +. +.+.+   .+++++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~---~~-v~v~~~~~~~~~~~~adl  158 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG---NS-ITATIIRTNSVETVSAAY  158 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC---Cc-eEEEEEeCCCCcEEecCE
Confidence            1 11111111  111223446789999999998763   68899999999998764   33 55554   3346799999


Q ss_pred             EEecCCcchHHHhhhCCCCCcccceec
Q 030042          157 LIGCDGIHSTVAWWLGLSEPLNVNIGC  183 (184)
Q Consensus       157 vI~a~G~~s~~~~~~~~~~~~~~~~~~  183 (184)
                      ||+|||.+|.+|+.++.+.+.|+++.+
T Consensus       159 vIgADG~~S~vR~~~~~~~~~~~g~~~  185 (400)
T PRK06475        159 LIACDGVWSMLRAKAGFSKARFSGHIA  185 (400)
T ss_pred             EEECCCccHhHHhhcCCCCCCcCCceE
Confidence            999999999999998777777877654

>PRK07045 putative monooxygenase; Reviewed

Probab=99.94  E-value=3.6e-25  Score=165.27  Aligned_cols=169  Identities=24%  Similarity=0.271  Sum_probs=128.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCC-ccceEEE
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPP-VNRISVT   79 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   79 (184)
                      |.+.++||+||||||+|+++|+.|++.|++|+|+|+.+.+...+++..+.+.+.+.|+.+|+++.+...... ...+...
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   80 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY   80 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe
Confidence            666679999999999999999999999999999999988766566677999999999999999998765432 3334333


Q ss_pred             ecCCCce-eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEee
Q 030042           80 NLGTGAT-QETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTK  155 (184)
Q Consensus        80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~  155 (184)
                      .  .++. ....+......+ ....+.+..+.+.|.+.+.   ++++++++++++++..++ +.. +.|.+.+|+++.+|
T Consensus        81 ~--~g~~~~~~~~~~~~~~g-~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~-~~v~~~~g~~~~~~  155 (388)
T PRK07045         81 H--DKELIASLDYRSASALG-YFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTV-TSVTLSDGERVAPT  155 (388)
T ss_pred             c--CCcEEEEecCCccccCC-ceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcE-EEEEeCCCCEEECC
Confidence            2  2222 333333221122 2345678889888888762   789999999999998752 222 56788888899999


Q ss_pred             EEEecCCcchHHHhh-hCCC
Q 030042          156 FLIGCDGIHSTVAWW-LGLS  174 (184)
Q Consensus       156 ~vI~a~G~~s~~~~~-~~~~  174 (184)
                      +||+|+|.+|.+|+. ++.+
T Consensus       156 ~vIgADG~~S~vR~~~~~~~  175 (388)
T PRK07045        156 VLVGADGARSMIRDDVLRMP  175 (388)
T ss_pred             EEEECCCCChHHHHHhhCCC
Confidence            999999999999995 4544

>PRK05868 hypothetical protein; Validated

Probab=99.94  E-value=6.2e-25  Score=162.85  Aligned_cols=163  Identities=23%  Similarity=0.260  Sum_probs=129.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .||+|||||++|+++|+.|++.|++|+|+|+.+.+...+.+..+.+.+.+.++++|+++.+.+...+...+.+.+.....
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            38999999999999999999999999999999888777888999999999999999999998777777777776544322


Q ss_pred             eeeeecCC-C-CCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           86 TQETSLTG-K-FGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                      ........ . ...+.....+.|.+|.+.|.+..+ +++++++++|++++.++   +. +.+.+.+|+++++|+||+|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~---~~-v~v~~~dg~~~~adlvIgADG  157 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDG---DS-VRVTFERAAAREFDLVIGADG  157 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecC---Ce-EEEEECCCCeEEeCEEEECCC
Confidence            21111100 0 011112346778899988877654 89999999999998654   44 888899998999999999999


Q ss_pred             cchHHHhhhC
Q 030042          163 IHSTVAWWLG  172 (184)
Q Consensus       163 ~~s~~~~~~~  172 (184)
                      .+|.+|+.+.
T Consensus       158 ~~S~vR~~~~  167 (372)
T PRK05868        158 LHSNVRRLVF  167 (372)
T ss_pred             CCchHHHHhc
Confidence            9999999874

>PRK06847 hypothetical protein; Provisional

Probab=99.94  E-value=2.8e-25  Score=165.22  Aligned_cols=177  Identities=28%  Similarity=0.361  Sum_probs=136.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |+ +..||+|||||++|+++|+.|++.|++|+|+|+.+.+...+.+..+.+.+.+.++.+|+++.+.+...+...+.++.
T Consensus         1 m~-~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (375)
T PRK06847          1 MA-AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD   79 (375)
T ss_pred             CC-CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence            66 46799999999999999999999999999999998877778899999999999999999999888777777776665


Q ss_pred             cCCCceeeeecCCCC-CCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEE
Q 030042           81 LGTGATQETSLTGKF-GDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFL  157 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~v  157 (184)
                      ............... ...+....+.+.++.+.|.+.+.  +++++++++|++++..+   +. +.+.+.+|+++.+|+|
T Consensus        80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ad~v  155 (375)
T PRK06847         80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD---DG-VTVTFSDGTTGRYDLV  155 (375)
T ss_pred             CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC---CE-EEEEEcCCCEEEcCEE
Confidence            433221222111110 01123346778888888888774  78999999999998765   44 7788888989999999


Q ss_pred             EecCCcchHHHhhh-CCC-CCccccee
Q 030042          158 IGCDGIHSTVAWWL-GLS-EPLNVNIG  182 (184)
Q Consensus       158 I~a~G~~s~~~~~~-~~~-~~~~~~~~  182 (184)
                      |+|+|.+|.+++.+ +.. .|.|.+..
T Consensus       156 I~AdG~~s~~r~~l~~~~~~~~~~g~~  182 (375)
T PRK06847        156 VGADGLYSKVRSLVFPDEPEPEYTGQG  182 (375)
T ss_pred             EECcCCCcchhhHhcCCCCCceeccce
Confidence            99999999998876 543 45665543

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.94  E-value=4e-25  Score=165.21  Aligned_cols=172  Identities=25%  Similarity=0.319  Sum_probs=130.2

Q ss_pred             CCC-ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC-----ccceeeecccHHHHHHHcCChHHHHhc-CCCc
Q 030042            1 MAM-VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG-----TGAAISFAPNAWLALDALGVSHKLASI-YPPV   73 (184)
Q Consensus         1 m~~-~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   73 (184)
                      |++ ..+||+||||||+|+++|+.|+++|++|+|+|+.+.+..     ..+...+.+.+.+.++.+|+++.+.+. ..+.
T Consensus         1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~   80 (392)
T PRK08773          1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPY   80 (392)
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcc
Confidence            554 468999999999999999999999999999999875421     235567889999999999999998763 4556


Q ss_pred             cceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcE
Q 030042           74 NRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI  151 (184)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~  151 (184)
                      ..+.++.........+...... .....+.+++..+.+.|.+.+.  +++++++++|++++..+   +. +.+.+.+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~---~~-v~v~~~~g~~  155 (392)
T PRK08773         81 RRMRVWDAGGGGELGFDADTLG-REQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA---DR-VRLRLDDGRR  155 (392)
T ss_pred             cEEEEEeCCCCceEEechhccC-CCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC---Ce-EEEEECCCCE
Confidence            6666555332222222211110 1112357788899888888764  78999999999998765   44 7788888889


Q ss_pred             EEeeEEEecCCcchHHHhhhCCCCCc
Q 030042          152 VKTKFLIGCDGIHSTVAWWLGLSEPL  177 (184)
Q Consensus       152 ~~a~~vI~a~G~~s~~~~~~~~~~~~  177 (184)
                      +.+|+||+|+|.+|.+++.++++.+.
T Consensus       156 ~~a~~vV~AdG~~S~vr~~~g~~~~~  181 (392)
T PRK08773        156 LEAALAIAADGAASTLRELAGLPVSR  181 (392)
T ss_pred             EEeCEEEEecCCCchHHHhhcCCceE
Confidence            99999999999999999998877643

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.94  E-value=3.5e-25  Score=165.39  Aligned_cols=170  Identities=21%  Similarity=0.289  Sum_probs=131.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |.|+.+||+|||||++|+++|+.|++.|++|+|+|+.+.+. .+++..+.+.+.+.++.+|+++.+.....+...+.++.
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~   81 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVD   81 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEe
Confidence            77788999999999999999999999999999999987653 35667788889999999999999988777788887776


Q ss_pred             cCCCce--eeeecCCCCC-CCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEee
Q 030042           81 LGTGAT--QETSLTGKFG-DGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTK  155 (184)
Q Consensus        81 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~  155 (184)
                      ......  ....+..... ..+..+.+.+..+.+.|.+.+.  +...+++++|++++..+   +. +.+.+.+|++++||
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~v~~~~g~~~~a~  157 (388)
T PRK07494         82 ATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE---DE-VTVTLADGTTLSAR  157 (388)
T ss_pred             CCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC---Ce-EEEEECCCCEEEEe
Confidence            443211  1122221111 1112356888889888888764  22338899999998765   44 77888888899999


Q ss_pred             EEEecCCcchHHHhhhCCCC
Q 030042          156 FLIGCDGIHSTVAWWLGLSE  175 (184)
Q Consensus       156 ~vI~a~G~~s~~~~~~~~~~  175 (184)
                      +||+|+|.+|.+++.++++.
T Consensus       158 ~vI~AdG~~S~vr~~~g~~~  177 (388)
T PRK07494        158 LVVGADGRNSPVREAAGIGV  177 (388)
T ss_pred             EEEEecCCCchhHHhcCCCc
Confidence            99999999999999988764

>PRK06185 hypothetical protein; Provisional

Probab=99.94  E-value=2.9e-25  Score=166.75  Aligned_cols=174  Identities=22%  Similarity=0.262  Sum_probs=128.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhc-CCCccceEEEec
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASI-YPPVNRISVTNL   81 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
                      .+++||+|||||++|+++|+.|++.|++|+|+|+.+......++..+.+.+.+.++.+|+++.+.+. ..+...+.++..
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~   83 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG   83 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence            3579999999999999999999999999999999876555567888999999999999999988763 345556655532


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCc-ceEEEEecCc-EEEeeE
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSS-PVFIHLVDGT-IVKTKF  156 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~-~~~v~~~~g~-~~~a~~  156 (184)
                       ........+.......+....+.+..+.+.|.+.+   ++++++++++++++...++  .. .+.+...+|+ +++||+
T Consensus        84 -~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~--~v~~v~~~~~~g~~~i~a~~  160 (407)
T PRK06185         84 -GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGG--RVTGVRARTPDGPGEIRADL  160 (407)
T ss_pred             -CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC--EEEEEEEEcCCCcEEEEeCE
Confidence             22122233332221222345677888888887765   3789999999999987652  22 0234445664 799999


Q ss_pred             EEecCCcchHHHhhhCCCCCccc
Q 030042          157 LIGCDGIHSTVAWWLGLSEPLNV  179 (184)
Q Consensus       157 vI~a~G~~s~~~~~~~~~~~~~~  179 (184)
                      ||+|+|.+|.+|+.++++.+.++
T Consensus       161 vI~AdG~~S~vr~~~gi~~~~~~  183 (407)
T PRK06185        161 VVGADGRHSRVRALAGLEVREFG  183 (407)
T ss_pred             EEECCCCchHHHHHcCCCccccC
Confidence            99999999999999988765433

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.94  E-value=6e-25  Score=164.87  Aligned_cols=167  Identities=23%  Similarity=0.370  Sum_probs=133.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCC--CccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            5 EKDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLR--GTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      ++||+||||||+|+++|+.|+++|  ++|+|+|+.+...  ..+++..+.+.+.+.++.+|+++.+.....+...+.+++
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   80 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD   80 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence            379999999999999999999995  9999999987543  347899999999999999999999988877777777766


Q ss_pred             cCCCce---eeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042           81 LGTGAT---QETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKT  154 (184)
Q Consensus        81 ~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a  154 (184)
                      ......   ....+......+. ....+++..+.+.|.+.+.  +++++++++|++++..+   +. +.+.+.+|.++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~g~~~~a  156 (403)
T PRK07333         81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD---EG-VTVTLSDGSVLEA  156 (403)
T ss_pred             CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC---CE-EEEEECCCCEEEe
Confidence            433222   1223322111222 3357899999999988775  78999999999998765   44 7788888889999


Q ss_pred             eEEEecCCcchHHHhhhCCCC
Q 030042          155 KFLIGCDGIHSTVAWWLGLSE  175 (184)
Q Consensus       155 ~~vI~a~G~~s~~~~~~~~~~  175 (184)
                      |+||+|+|.+|.+++.++++.
T Consensus       157 d~vI~AdG~~S~vr~~~g~~~  177 (403)
T PRK07333        157 RLLVAADGARSKLRELAGIKT  177 (403)
T ss_pred             CEEEEcCCCChHHHHHcCCCc
Confidence            999999999999999988765

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.94  E-value=1.2e-24  Score=164.56  Aligned_cols=170  Identities=25%  Similarity=0.304  Sum_probs=128.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHh----CCCCeEEEeccCCCC------------CccceeeecccHHHHHHHcCChHHHHhc
Q 030042            6 KDVVIIGAGIAGLATALALKR----LGVEPLVLEKSDGLR------------GTGAAISFAPNAWLALDALGVSHKLASI   69 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~----~g~~v~vie~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (184)
                      |||+||||||+|+++|+.|++    +|++|+|||+.+.+.            ..+++..+.+.+++.|+.+|+++.+.+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            699999999999999999998    899999999954322            1357899999999999999999999765


Q ss_pred             -CCCccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC-----CCeeeeCceEEEEecc----CCCCC
Q 030042           70 -YPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP-----NGTIHFSSKIAAIDSQ----THDGS  139 (184)
Q Consensus        70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~i~~~~~v~~~~~~----~~~~~  139 (184)
                       ..+...+.++.....  ....|.......+..+.+.+..+.+.|.+.+.     +++++++++|++++..    +++++
T Consensus        81 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~  158 (437)
T TIGR01989        81 RIQPFGRMQVWDGCSL--ALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSN  158 (437)
T ss_pred             cCCceeeEEEecCCCC--ceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCC
Confidence             356666666543321  22333322111123456788888887777653     3789999999999753    11124


Q ss_pred             cceEEEEecCcEEEeeEEEecCCcchHHHhhhCCCCCcc
Q 030042          140 SPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLN  178 (184)
Q Consensus       140 ~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~~~~~~~~  178 (184)
                      . +.|.+.+|++++||+||+|||.+|.+|+.++++.+.+
T Consensus       159 ~-v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~  196 (437)
T TIGR01989       159 W-VHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGW  196 (437)
T ss_pred             c-eEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccce
Confidence            4 8888899999999999999999999999998876543

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.93  E-value=8.8e-25  Score=164.01  Aligned_cols=166  Identities=19%  Similarity=0.276  Sum_probs=127.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC--------CCccceeeecccHHHHHHHcCChHHHHhc-CCCccc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL--------RGTGAAISFAPNAWLALDALGVSHKLASI-YPPVNR   75 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   75 (184)
                      .+||+||||||+|+++|+.|+++|++|+|+|+.+..        ....++..+.+.+.+.|+.+|+++.+.+. ..+...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   81 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE   81 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence            489999999999999999999999999999998631        11235677899999999999999998753 456666


Q ss_pred             eEEEecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEE
Q 030042           76 ISVTNLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIV  152 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~  152 (184)
                      +.++.....  ....|........ ..+.+.+..+.+.|.+.+.  ++++++++++++++..+   +. +.|.+.+|+++
T Consensus        82 ~~~~~~~~~--~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~g~~~  155 (405)
T PRK05714         82 MQVWDGSGT--GQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG---DD-WLLTLADGRQL  155 (405)
T ss_pred             EEEEcCCCC--ceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC---Ce-EEEEECCCCEE
Confidence            666654332  2223332111111 2346778888888877664  78999999999998765   44 77888888889


Q ss_pred             EeeEEEecCCcchHHHhhhCCCCC
Q 030042          153 KTKFLIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       153 ~a~~vI~a~G~~s~~~~~~~~~~~  176 (184)
                      +||+||+|+|.+|.+|+.++.+.+
T Consensus       156 ~a~~vVgAdG~~S~vR~~lg~~~~  179 (405)
T PRK05714        156 RAPLVVAADGANSAVRRLAGCATR  179 (405)
T ss_pred             EeCEEEEecCCCchhHHhcCCCcc
Confidence            999999999999999999887654

>PRK08244 hypothetical protein; Provisional

Probab=99.93  E-value=1e-24  Score=167.18  Aligned_cols=164  Identities=21%  Similarity=0.285  Sum_probs=126.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.+.+++.++++|+++.+.....+.....+..... 
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~-   80 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT-   80 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc-
Confidence            4899999999999999999999999999999998887788999999999999999999999988766555544432211 


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE--ecC-cEEEeeEEEe
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL--VDG-TIVKTKFLIG  159 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~~g-~~~~a~~vI~  159 (184)
                         ...+.......+....+.+..+.+.|.+.+.  ++++++++++++++..+   +. +.+..  .+| ++++||+||+
T Consensus        81 ---~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~i~a~~vVg  153 (493)
T PRK08244         81 ---RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG---DG-VEVVVRGPDGLRTLTSSYVVG  153 (493)
T ss_pred             ---cCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC---Ce-EEEEEEeCCccEEEEeCEEEE
Confidence               1122211111123345777788888877664  78999999999998765   33 44444  345 4799999999


Q ss_pred             cCCcchHHHhhhCCCCC
Q 030042          160 CDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       160 a~G~~s~~~~~~~~~~~  176 (184)
                      |+|.+|.+|+.++++.+
T Consensus       154 ADG~~S~vR~~lgi~~~  170 (493)
T PRK08244        154 ADGAGSIVRKQAGIAFP  170 (493)
T ss_pred             CCCCChHHHHhcCCCcc
Confidence            99999999999987654

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.93  E-value=2e-24  Score=168.87  Aligned_cols=173  Identities=18%  Similarity=0.255  Sum_probs=130.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      .++||+||||||+||++|+.|++. |++|+|||+.+.+...+++.++.+.+++.|+.+|+++.+.....+...+.++...
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~  110 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD  110 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence            468999999999999999999995 9999999999888778899999999999999999999998877777777776543


Q ss_pred             CCceeee----ecCCC--CCCCCCCeeeeHHHHHHHHHhhCC--C--CeeeeCceEEEEeccCCCCCcceEEEEe-----
Q 030042           83 TGATQET----SLTGK--FGDGSGPRFIHRKKLLQTLADELP--N--GTIHFSSKIAAIDSQTHDGSSPVFIHLV-----  147 (184)
Q Consensus        83 ~~~~~~~----~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~--~~i~~~~~v~~~~~~~~~~~~~~~v~~~-----  147 (184)
                      .......    .+...  .........+++..+.+.|.+.+.  +  +.+.+++++++++.+++.... +++...     
T Consensus       111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~-V~v~l~~~~~~  189 (634)
T PRK08294        111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYP-VTVTLRRTDGE  189 (634)
T ss_pred             CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCC-EEEEEEECCCC
Confidence            2111000    01110  011123356777788888887763  3  477899999999876431233 556553     


Q ss_pred             -cC--cEEEeeEEEecCCcchHHHhhhCCCCCc
Q 030042          148 -DG--TIVKTKFLIGCDGIHSTVAWWLGLSEPL  177 (184)
Q Consensus       148 -~g--~~~~a~~vI~a~G~~s~~~~~~~~~~~~  177 (184)
                       +|  ++++||+||+|||++|.+|+.+|++.+.
T Consensus       190 ~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G  222 (634)
T PRK08294        190 HEGEEETVRAKYVVGCDGARSRVRKAIGRELRG  222 (634)
T ss_pred             CCCceEEEEeCEEEECCCCchHHHHhcCCCccC
Confidence             35  5899999999999999999999887654

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.93  E-value=1.6e-25  Score=165.05  Aligned_cols=167  Identities=30%  Similarity=0.472  Sum_probs=123.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCcc--ceEEEec-
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVN--RISVTNL-   81 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-   81 (184)
                      ++||+||||||+|+++|+.|+++|++|+|||+.+.+...+++..+.+.+.+.|+.+|+++.+.....+..  ....+.. 
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~   80 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI   80 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence            4799999999999999999999999999999999888888999999999999999999999888764333  2222222 


Q ss_pred             CCCc-e-----eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe---cC-
Q 030042           82 GTGA-T-----QETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG-  149 (184)
Q Consensus        82 ~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g-  149 (184)
                      .... .     ....+. ....++....+.+.++.+.|.+.++  +++++++++++++..++   +. +.+.+.   +| 
T Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~---~~-~~~~~~~~~~g~  155 (356)
T PF01494_consen   81 SDSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDD---DG-VTVVVRDGEDGE  155 (356)
T ss_dssp             TTSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEET---TE-EEEEEEETCTCE
T ss_pred             CCccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccc---cc-cccccccccCCc
Confidence            0110 0     111111 1123346678899999999999875  79999999999998876   33 333332   34 


Q ss_pred             -cEEEeeEEEecCCcchHHHhhhCCCCC
Q 030042          150 -TIVKTKFLIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       150 -~~~~a~~vI~a~G~~s~~~~~~~~~~~  176 (184)
                       ++++||+||+|+|.+|.+|+.++...+
T Consensus       156 ~~~i~adlvVgADG~~S~vR~~l~~~~~  183 (356)
T PF01494_consen  156 EETIEADLVVGADGAHSKVRKQLGIDRP  183 (356)
T ss_dssp             EEEEEESEEEE-SGTT-HHHHHTTGGEE
T ss_pred             eeEEEEeeeecccCcccchhhhcccccc
Confidence             379999999999999999999986643

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.93  E-value=1.9e-24  Score=162.77  Aligned_cols=167  Identities=20%  Similarity=0.258  Sum_probs=124.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC--ccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG--TGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      ..+||+||||||+|+++|+.|++.|++|+|+|+.+.+..  .+++..+.+.+.+.|+.+|+++++.....+...+.++..
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   96 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA   96 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence            368999999999999999999999999999999887543  467889999999999999999999887777776666543


Q ss_pred             CCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEec--C-cEEEe
Q 030042           82 GTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD--G-TIVKT  154 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~--g-~~~~a  154 (184)
                      .......+.....  ... ..+...+..+.+.|.+.+.   ++++++++++++++..+   +. +.|.+.+  + .+++|
T Consensus        97 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~---~~-~~v~~~~~~~~~~i~a  170 (415)
T PRK07364         97 DYPGVVKFQPTDL--GTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ---DA-ATVTLEIEGKQQTLQS  170 (415)
T ss_pred             CCCceeeeccccC--CCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC---Ce-eEEEEccCCcceEEee
Confidence            3211122221111  111 1233444567777777653   68999999999998765   33 5566543  2 46999


Q ss_pred             eEEEecCCcchHHHhhhCCCCC
Q 030042          155 KFLIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       155 ~~vI~a~G~~s~~~~~~~~~~~  176 (184)
                      |+||+|||.+|.+|+.++....
T Consensus       171 dlvIgADG~~S~vR~~~~~~~~  192 (415)
T PRK07364        171 KLVVAADGARSPIRQAAGIKTK  192 (415)
T ss_pred             eEEEEeCCCCchhHHHhCCCce
Confidence            9999999999999999887643

>PRK07236 hypothetical protein; Provisional

Probab=99.93  E-value=1.7e-24  Score=161.49  Aligned_cols=167  Identities=25%  Similarity=0.317  Sum_probs=125.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC-CCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL-RGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      |+..||+|||||++|+++|+.|++.|++|+|+||.+.. ...+.++.+.+.+.+.|+.+|+++.. ....+.....+...
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~   82 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLDR   82 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEeC
Confidence            56789999999999999999999999999999998754 34567888999999999999998665 33344444444442


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                      ..........        ......+..+.+.|.+.+++..++++++|++++..+   +. +.+.+.+|+++++|+||+|+
T Consensus        83 ~g~~~~~~~~--------~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~ad~vIgAD  150 (386)
T PRK07236         83 DGRVVQRRPM--------PQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDG---DR-VTARFADGRRETADLLVGAD  150 (386)
T ss_pred             CCCEeeccCC--------CccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecC---Ce-EEEEECCCCEEEeCEEEECC
Confidence            2211111111        111235677888888887778899999999998765   44 78888999999999999999


Q ss_pred             CcchHHHhhh-CCCCCccccee
Q 030042          162 GIHSTVAWWL-GLSEPLNVNIG  182 (184)
Q Consensus       162 G~~s~~~~~~-~~~~~~~~~~~  182 (184)
                      |.+|.+|+.+ +...+.|.+..
T Consensus       151 G~~S~vR~~l~~~~~~~~~g~~  172 (386)
T PRK07236        151 GGRSTVRAQLLPDVRPTYAGYV  172 (386)
T ss_pred             CCCchHHHHhCCCCCCCcCCeE
Confidence            9999999977 33346666543

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.93  E-value=3e-24  Score=160.04  Aligned_cols=167  Identities=19%  Similarity=0.258  Sum_probs=121.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC--CC----ccceeeecccHHHHHHHcCChHHHHhc-CCCccce
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL--RG----TGAAISFAPNAWLALDALGVSHKLASI-YPPVNRI   76 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   76 (184)
                      .++||+||||||+|+++|+.|++.|++|+|+|+.+..  ..    ..+...+.+.+++.|+.+|+++.+... ..+...+
T Consensus         2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~   81 (384)
T PRK08849          2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRL   81 (384)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceE
Confidence            4589999999999999999999999999999987522  11    124568999999999999999988653 3455555


Q ss_pred             EEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEE
Q 030042           77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVK  153 (184)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~  153 (184)
                      ..+..... ...+...... .....+.+.+..+...|.+.+   +++++++++++++++.++   +. +.+.+.+|.+++
T Consensus        82 ~~~~~~~~-~~~~~~~~~~-~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~---~~-~~v~~~~g~~~~  155 (384)
T PRK08849         82 ETWEHPEC-RTRFHSDELN-LDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA---EG-NRVTLESGAEIE  155 (384)
T ss_pred             EEEeCCCc-eEEecccccC-CCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC---Ce-EEEEECCCCEEE
Confidence            54442211 1222111110 111124455566777776654   378999999999998865   44 778888999999


Q ss_pred             eeEEEecCCcchHHHhhhCCCCC
Q 030042          154 TKFLIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       154 a~~vI~a~G~~s~~~~~~~~~~~  176 (184)
                      +|+||+|||.+|.+|+.+++...
T Consensus       156 ~~lvIgADG~~S~vR~~~gi~~~  178 (384)
T PRK08849        156 AKWVIGADGANSQVRQLAGIGIT  178 (384)
T ss_pred             eeEEEEecCCCchhHHhcCCCce
Confidence            99999999999999999887643

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.93  E-value=1.9e-24  Score=162.13  Aligned_cols=167  Identities=19%  Similarity=0.249  Sum_probs=127.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc-CCCC----CccceeeecccHHHHHHHcCChHHHHhc-CCCccceE
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS-DGLR----GTGAAISFAPNAWLALDALGVSHKLASI-YPPVNRIS   77 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   77 (184)
                      ..+||+||||||+|+++|+.|++.|++|+|+|+. +...    ...++..+.+.+.+.|+.+|+++.+.+. ..+...+.
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~   82 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAME   82 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEE
Confidence            4689999999999999999999999999999996 2221    2357788999999999999999999764 56667777


Q ss_pred             EEecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEE
Q 030042           78 VTNLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVK  153 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~  153 (184)
                      ++....  .....+.......+ ..+.+.+..+.+.|.+.+.   +++++++++|++++.++   +. +.|.+.+|++++
T Consensus        83 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~  156 (405)
T PRK08850         83 VWEQDS--FARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE---SE-AWLTLDNGQALT  156 (405)
T ss_pred             EEeCCC--CceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC---Ce-EEEEECCCCEEE
Confidence            765432  12222222111111 2345667777777777653   68999999999998765   44 778888999999


Q ss_pred             eeEEEecCCcchHHHhhhCCCCC
Q 030042          154 TKFLIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       154 a~~vI~a~G~~s~~~~~~~~~~~  176 (184)
                      ||+||+|+|.+|.+|+.++++.+
T Consensus       157 a~lvIgADG~~S~vR~~~~~~~~  179 (405)
T PRK08850        157 AKLVVGADGANSWLRRQMDIPLT  179 (405)
T ss_pred             eCEEEEeCCCCChhHHHcCCCee
Confidence            99999999999999999987754

>PRK06834 hypothetical protein; Provisional

Probab=99.93  E-value=2.5e-24  Score=164.20  Aligned_cols=165  Identities=20%  Similarity=0.239  Sum_probs=124.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-CccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .+||+||||||+|+++|+.|+++|++|+|+|+.+.+. ...++..+.+.+.+.++.+|+++.+.+.........+.    
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~----   78 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA----   78 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee----
Confidence            5899999999999999999999999999999987654 34577889999999999999999987654333211110    


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                        ...+.+.......+....+....+.+.|.+.+.  ++++++++++++++.++   +. +.+.+.+|++++||+||+|+
T Consensus        79 --~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~---~~-v~v~~~~g~~i~a~~vVgAD  152 (488)
T PRK06834         79 --ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD---TG-VDVELSDGRTLRAQYLVGCD  152 (488)
T ss_pred             --eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC---Ce-EEEEECCCCEEEeCEEEEec
Confidence              011111111111122334566777777777664  78999999999999875   44 77777788889999999999


Q ss_pred             CcchHHHhhhCCCCCccc
Q 030042          162 GIHSTVAWWLGLSEPLNV  179 (184)
Q Consensus       162 G~~s~~~~~~~~~~~~~~  179 (184)
                      |.+|.+|+.++++.+.++
T Consensus       153 G~~S~vR~~lgi~~~g~~  170 (488)
T PRK06834        153 GGRSLVRKAAGIDFPGWD  170 (488)
T ss_pred             CCCCCcHhhcCCCCCCCC
Confidence            999999999998876543

>PRK07538 hypothetical protein; Provisional

Probab=99.93  E-value=6.2e-24  Score=159.73  Aligned_cols=171  Identities=27%  Similarity=0.342  Sum_probs=127.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCce
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGAT   86 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (184)
                      ||+||||||+|+++|+.|++.|++|+|+|+.+.+...+.+..+.+.+.+.|+++|+++.+.....+...+.+........
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            89999999999999999999999999999998877788999999999999999999999887777666776665433221


Q ss_pred             eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---C-CeeeeCceEEEEeccCCCCCcceEEEEecC-----cEEEeeEE
Q 030042           87 QETSLTGKFGDGSGPRFIHRKKLLQTLADELP---N-GTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-----TIVKTKFL  157 (184)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~-~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-----~~~~a~~v  157 (184)
                      .................++|..|.+.|.+.+.   + ..++++++|++++..+   ++ +.+.+.++     ++++||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~---~~-~~~~~~~~~~g~~~~~~adlv  157 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDA---DV-TVVFLGDRAGGDLVSVRGDVL  157 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecC---Cc-eEEEEeccCCCccceEEeeEE
Confidence            11111111011113346899999998887752   3 4699999999998765   33 44444332     48999999


Q ss_pred             EecCCcchHHHhhhCCC--CCcccce
Q 030042          158 IGCDGIHSTVAWWLGLS--EPLNVNI  181 (184)
Q Consensus       158 I~a~G~~s~~~~~~~~~--~~~~~~~  181 (184)
                      |+|+|.+|.+|+.+...  .+.|.+.
T Consensus       158 IgADG~~S~vR~~l~~~~~~~~~~g~  183 (413)
T PRK07538        158 IGADGIHSAVRAQLYPDEGPPRWNGV  183 (413)
T ss_pred             EECCCCCHHHhhhhcCCCCCCcccce
Confidence            99999999999988533  3555543

>PRK06126 hypothetical protein; Provisional

Probab=99.93  E-value=4.4e-24  Score=165.55  Aligned_cols=172  Identities=26%  Similarity=0.392  Sum_probs=125.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCcc---ceE
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVN---RIS   77 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   77 (184)
                      |++..+||+||||||+|+++|+.|+++|++|+|+|+.+.+...+++..+.+.+++.|+.+|+++++.+...+..   ...
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~   82 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIA   82 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCce
Confidence            44567899999999999999999999999999999998777778899999999999999999999987664431   111


Q ss_pred             EEe-cCCCceeeeecCCCC-----------C-CCC-CCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCc
Q 030042           78 VTN-LGTGATQETSLTGKF-----------G-DGS-GPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSS  140 (184)
Q Consensus        78 ~~~-~~~~~~~~~~~~~~~-----------~-~~~-~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~  140 (184)
                      +.. ........+.+....           . ..+ ....+.+..+.+.|.+.+   ++++++++++|++++.++   +.
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~---~~  159 (545)
T PRK06126         83 YFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA---DG  159 (545)
T ss_pred             EEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC---Ce
Confidence            111 112112222221110           0 011 234567777888888765   378999999999998775   33


Q ss_pred             ceEEEE---ecCc--EEEeeEEEecCCcchHHHhhhCCCCC
Q 030042          141 PVFIHL---VDGT--IVKTKFLIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       141 ~~~v~~---~~g~--~~~a~~vI~a~G~~s~~~~~~~~~~~  176 (184)
                       +.+.+   .+|+  ++.+|+||+|+|++|.+|+.+++...
T Consensus       160 -v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~  199 (545)
T PRK06126        160 -VTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYE  199 (545)
T ss_pred             -EEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccc
Confidence             44443   3353  78999999999999999999987643

>PRK09126 hypothetical protein; Provisional

Probab=99.93  E-value=2.7e-24  Score=160.81  Aligned_cols=167  Identities=18%  Similarity=0.281  Sum_probs=124.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-----CccceeeecccHHHHHHHcCChHHHHhcC-CCccce
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-----GTGAAISFAPNAWLALDALGVSHKLASIY-PPVNRI   76 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   76 (184)
                      |+++||+||||||+|+++|+.|+++|++|+|+||.+.+.     ..+++..+.+.+.+.|+.+|+++.+.... .+....
T Consensus         1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~   80 (392)
T PRK09126          1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDA   80 (392)
T ss_pred             CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceE
Confidence            457999999999999999999999999999999987642     34667778899999999999998886553 344445


Q ss_pred             EEEecCCCceeeeecCCCC-CCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEE
Q 030042           77 SVTNLGTGATQETSLTGKF-GDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIV  152 (184)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~  152 (184)
                      .+.+....  ..+.+.... ......+.+.+..+.+.|.+.+   .+++++++++|++++..+   +. +.|.+++|+++
T Consensus        81 ~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~---~~-~~v~~~~g~~~  154 (392)
T PRK09126         81 KVLNGRSP--FALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD---DG-AQVTLANGRRL  154 (392)
T ss_pred             EEEcCCCC--ceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC---Ce-EEEEEcCCCEE
Confidence            54432221  222222111 0111234567777877777665   279999999999998765   44 77888888899


Q ss_pred             EeeEEEecCCcchHHHhhhCCCC
Q 030042          153 KTKFLIGCDGIHSTVAWWLGLSE  175 (184)
Q Consensus       153 ~a~~vI~a~G~~s~~~~~~~~~~  175 (184)
                      .||+||+|+|.+|.+++.++++.
T Consensus       155 ~a~~vI~AdG~~S~vr~~~g~~~  177 (392)
T PRK09126        155 TARLLVAADSRFSATRRQLGIGA  177 (392)
T ss_pred             EeCEEEEeCCCCchhhHhcCCCc
Confidence            99999999999999999987654

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.93  E-value=5e-24  Score=158.99  Aligned_cols=164  Identities=24%  Similarity=0.367  Sum_probs=129.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC-----ccceeeecccHHHHHHHcCChHHHHh-cCCCccceEEEe
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG-----TGAAISFAPNAWLALDALGVSHKLAS-IYPPVNRISVTN   80 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   80 (184)
                      ||+||||||+|+++|+.|+++|++|+|+||.+.++.     .+++..+.+.+.+.++++|+++++.. ...+...+.++.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            799999999999999999999999999999987543     25788999999999999999999887 666677776665


Q ss_pred             cCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--C-CeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042           81 LGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--N-GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKF  156 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~  156 (184)
                      .......  .+.......+ ..+.+++..+.+.|.+.+.  + ++++++++|++++..+   +. +.+.+.+|+++.+|+
T Consensus        81 ~~~~~~~--~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~~~~  154 (385)
T TIGR01988        81 GGSFGAL--HFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS---DH-VELTLDDGQQLRARL  154 (385)
T ss_pred             CCCCceE--EechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC---Ce-eEEEECCCCEEEeeE
Confidence            4332211  2221111111 3457889999999988774  3 8999999999998765   44 778888998899999


Q ss_pred             EEecCCcchHHHhhhCCCCC
Q 030042          157 LIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       157 vI~a~G~~s~~~~~~~~~~~  176 (184)
                      ||+|+|.+|.+++.++.+.+
T Consensus       155 vi~adG~~S~vr~~l~~~~~  174 (385)
T TIGR01988       155 LVGADGANSKVRQLAGIPTT  174 (385)
T ss_pred             EEEeCCCCCHHHHHcCCCcc
Confidence            99999999999999886543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.93  E-value=5.8e-24  Score=158.53  Aligned_cols=164  Identities=26%  Similarity=0.340  Sum_probs=126.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCCCCCc----cceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            7 DVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRGT----GAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      ||+||||||+|+++|+.|+++| ++|+|+|+.+.+...    +++..+.+.+.+.++.+|+++.+.....+...+.+...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            7999999999999999999999 999999998765432    46788999999999999999998777666666555432


Q ss_pred             CCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEE
Q 030042           82 GTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFL  157 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~v  157 (184)
                      .......+....  ...+ ..+.+++..+.+.|.+.+.   +++++++++|++++..+   +. +.+.+.+|.++.||+|
T Consensus        81 ~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ad~v  154 (382)
T TIGR01984        81 GHFGATHLRASE--FGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ---DY-VRVTLDNGQQLRAKLL  154 (382)
T ss_pred             CCCceEEechhh--cCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC---Ce-EEEEECCCCEEEeeEE
Confidence            211111111111  1111 2356889999999988763   78999999999998765   44 7788888888999999


Q ss_pred             EecCCcchHHHhhhCCCCC
Q 030042          158 IGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       158 I~a~G~~s~~~~~~~~~~~  176 (184)
                      |+|+|.+|.+++.++++.+
T Consensus       155 V~AdG~~S~vr~~l~~~~~  173 (382)
T TIGR01984       155 IAADGANSKVRELLSIPTE  173 (382)
T ss_pred             EEecCCChHHHHHcCCCCc
Confidence            9999999999999987653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.92  E-value=1e-23  Score=157.60  Aligned_cols=168  Identities=23%  Similarity=0.301  Sum_probs=125.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC------ccceeeecccHHHHHHHcCChHHHHhc-CCCc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG------TGAAISFAPNAWLALDALGVSHKLASI-YPPV   73 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   73 (184)
                      |..+.+||+||||||+|+++|+.|++.|++|+|+|+.+....      ..+...+.+.+.+.++.+|+|+.+... ..+.
T Consensus         1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~   80 (391)
T PRK08020          1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY   80 (391)
T ss_pred             CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence            666789999999999999999999999999999999764221      225567889999999999999888653 3344


Q ss_pred             cceEEEecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecC
Q 030042           74 NRISVTNLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG  149 (184)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g  149 (184)
                      ..+..+.+.....   .+.......+ ..+.+++..+.+.|.+.+   ++++++++++++++...+   +. +.|.+.+|
T Consensus        81 ~~~~~~~~~~~~~---~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~---~~-~~v~~~~g  153 (391)
T PRK08020         81 RRLETWEWETAHV---VFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD---DG-WELTLADG  153 (391)
T ss_pred             ceEEEEeCCCCeE---EecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC---Ce-EEEEECCC
Confidence            4444443333211   1211111111 234688888888887765   378999999999998765   44 77888888


Q ss_pred             cEEEeeEEEecCCcchHHHhhhCCCC
Q 030042          150 TIVKTKFLIGCDGIHSTVAWWLGLSE  175 (184)
Q Consensus       150 ~~~~a~~vI~a~G~~s~~~~~~~~~~  175 (184)
                      ++++||+||+|+|.+|.+|+.++++.
T Consensus       154 ~~~~a~~vI~AdG~~S~vR~~~~~~~  179 (391)
T PRK08020        154 EEIQAKLVIGADGANSQVRQMAGIGV  179 (391)
T ss_pred             CEEEeCEEEEeCCCCchhHHHcCCCc
Confidence            89999999999999999999987654

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.92  E-value=1.9e-23  Score=157.25  Aligned_cols=171  Identities=28%  Similarity=0.396  Sum_probs=126.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCC----ccceEEEec
Q 030042            7 DVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPP----VNRISVTNL   81 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   81 (184)
                      +|+|||||++||++|+.|+++| ++|+|+||.+.....|.++.+.+.+...++.+|+.+.+......    .....+.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6999999999999999999998 69999999988888899999999999999999998877654321    122222211


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                      ............  ..+.....++|..|.+.|.+.++...++++++|+++...+   ++ +.+.+.+|.++++|+||+|+
T Consensus        82 ~~~~~~~~~~~~--~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ad~vVgAD  155 (414)
T TIGR03219        82 NGSDASYLGATI--APGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQA---EE-VQVLFTDGTEYRCDLLIGAD  155 (414)
T ss_pred             ecCccceeeeec--cccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecC---Cc-EEEEEcCCCEEEeeEEEECC
Confidence            111111111000  0111223578999999999998777789999999998765   45 88888899899999999999


Q ss_pred             CcchHHHhhhC------CCCCcccceec
Q 030042          162 GIHSTVAWWLG------LSEPLNVNIGC  183 (184)
Q Consensus       162 G~~s~~~~~~~------~~~~~~~~~~~  183 (184)
                      |.+|.+|+.+-      ...|.|+++.+
T Consensus       156 G~~S~vR~~l~~~~~~~~~~p~~~g~~~  183 (414)
T TIGR03219       156 GIKSALRDYVLQGQGQAPVRPRFSGTCA  183 (414)
T ss_pred             CccHHHHHHhcCccCCCCCCccccCcEE
Confidence            99999998762      12356665543

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.92  E-value=1.6e-23  Score=156.74  Aligned_cols=169  Identities=28%  Similarity=0.365  Sum_probs=125.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhC---CCCeEEEeccCCC-----CCccceeeecccHHHHHHHcCChHHHHhcCCCcc
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRL---GVEPLVLEKSDGL-----RGTGAAISFAPNAWLALDALGVSHKLASIYPPVN   74 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~---g~~v~vie~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (184)
                      |+++||+||||||+|+++|+.|+++   |++|+|+|+....     +..+++..+.+.+.+.++.+|+++.+.+...+..
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~   80 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT   80 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence            4679999999999999999999998   9999999995322     2335788899999999999999999988776666


Q ss_pred             ceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcE
Q 030042           75 RISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI  151 (184)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~  151 (184)
                      .+.+.+........+...... .......+.+..+.+.|.+.+   .+++++++++|+++...+   +. +.|.+.+|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~---~~-~~v~~~~g~~  155 (395)
T PRK05732         81 HIHVSDRGHAGFVRLDAEDYG-VPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ---GS-VRVTLDDGET  155 (395)
T ss_pred             EEEEecCCCCceEEeehhhcC-CCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC---Ce-EEEEECCCCE
Confidence            555433211111111111110 001124577777777777654   368999999999998764   44 7788888888


Q ss_pred             EEeeEEEecCCcchHHHhhhCCCCC
Q 030042          152 VKTKFLIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       152 ~~a~~vI~a~G~~s~~~~~~~~~~~  176 (184)
                      +.+|+||+|+|.+|.+++.+++..+
T Consensus       156 ~~a~~vI~AdG~~S~vr~~~~~~~~  180 (395)
T PRK05732        156 LTGRLLVAADGSHSALREALGIDWQ  180 (395)
T ss_pred             EEeCEEEEecCCChhhHHhhCCCcc
Confidence            9999999999999999998887644

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.92  E-value=2.7e-23  Score=161.14  Aligned_cols=168  Identities=23%  Similarity=0.317  Sum_probs=125.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .++||+||||||+|+++|+.|+++|++|+|+|+.+.+...+++..+.+.+++.++.+|+++++.+...+.......... 
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~-  100 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD-  100 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC-
Confidence            4679999999999999999999999999999999888778899999999999999999999988776554433333322 


Q ss_pred             CceeeeecCCCC-CCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEE--ecCc-EEEeeE
Q 030042           84 GATQETSLTGKF-GDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHL--VDGT-IVKTKF  156 (184)
Q Consensus        84 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~~g~-~~~a~~  156 (184)
                      .....+.+.... ...+....+.+..+.+.|.+.+.   ++++++++++++++.++   +. +.+..  .++. ++++|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~i~ad~  176 (547)
T PRK08132        101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD---DG-VTLTVETPDGPYTLEADW  176 (547)
T ss_pred             CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC---CE-EEEEEECCCCcEEEEeCE
Confidence            222222222111 11112334667777777777653   68999999999998775   33 44443  4454 799999


Q ss_pred             EEecCCcchHHHhhhCCCCC
Q 030042          157 LIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       157 vI~a~G~~s~~~~~~~~~~~  176 (184)
                      ||+|+|.+|.+|+.++++.+
T Consensus       177 vVgADG~~S~vR~~lg~~~~  196 (547)
T PRK08132        177 VIACDGARSPLREMLGLEFE  196 (547)
T ss_pred             EEECCCCCcHHHHHcCCCCC
Confidence            99999999999999987654

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=99.92  E-value=6.9e-24  Score=152.71  Aligned_cols=173  Identities=36%  Similarity=0.550  Sum_probs=130.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      +-+|+|||||++|+++|+.|.|.|++|+|+|+...+.+.|+++.+.-.+++.|+..++.+.+.+.+.+...........+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg   81 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG   81 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence            45899999999999999999999999999999888888899999988899999999999999999988887765554454


Q ss_pred             ce-eeeecCCCCCCCCCCeee-eHHHHHHHHHhhCCC--CeeeeCce----EEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042           85 AT-QETSLTGKFGDGSGPRFI-HRKKLLQTLADELPN--GTIHFSSK----IAAIDSQTHDGSSPVFIHLVDGTIVKTKF  156 (184)
Q Consensus        85 ~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~--~~i~~~~~----v~~~~~~~~~~~~~~~v~~~~g~~~~a~~  156 (184)
                      +. ..+.+...   +.....+ .+..+...|.+..+-  +++.+++.    ...++..   +.. ..+++.+|.++++|+
T Consensus        82 ~~~~~~~~~~~---~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~---~~~-~~v~l~~g~~~~~dl  154 (420)
T KOG2614|consen   82 KEVSRILYGEP---DEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETL---GKK-LVVHLSDGTTVKGDL  154 (420)
T ss_pred             CeeEecccCCc---hHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeec---ccc-cceecCCCcEEEeeE
Confidence            43 55544432   1112233 344455555555553  44443332    2222222   123 678889999999999


Q ss_pred             EEecCCcchHHHhhhCCCCCcccceecC
Q 030042          157 LIGCDGIHSTVAWWLGLSEPLNVNIGCI  184 (184)
Q Consensus       157 vI~a~G~~s~~~~~~~~~~~~~~~~~~~  184 (184)
                      +|+|||++|.+|++++...|.|.++.|+
T Consensus       155 ligCDGa~S~Vr~~l~~~~p~~~~~~ay  182 (420)
T KOG2614|consen  155 LIGCDGAYSKVRKWLGFKEPRYDGSQAY  182 (420)
T ss_pred             EEEcCchHHHHHHHhcccCCcceeEEEE
Confidence            9999999999999999888999988874

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.92  E-value=3.8e-23  Score=154.50  Aligned_cols=164  Identities=23%  Similarity=0.302  Sum_probs=122.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC--CCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL--RGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      ++||+||||||+|+++|+.|++.|++|+|+|+.+..  ....++..+.+.+.+.++++|+++.+.....+...+.+... 
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~-   80 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD-   80 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC-
Confidence            579999999999999999999999999999998753  23345566899999999999999999887777777776652 


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE-ecCc--EEEeeEE
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDGT--IVKTKFL  157 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g~--~~~a~~v  157 (184)
                       +.....++.... .+.....+.+..+.+.|.+.+.  ++++++++++++++..+  ++. ..|.. .+|+  +++||+|
T Consensus        81 -g~~~~~~~~~~~-~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~--~~~-~~V~~~~~G~~~~i~ad~v  155 (392)
T PRK08243         81 -GRRHRIDLTELT-GGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFD--SDR-PYVTYEKDGEEHRLDCDFI  155 (392)
T ss_pred             -CEEEEecccccc-CCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecC--CCc-eEEEEEcCCeEEEEEeCEE
Confidence             223334443221 1223344556677777765543  78999999999998622  133 44554 4563  7899999


Q ss_pred             EecCCcchHHHhhhCCC
Q 030042          158 IGCDGIHSTVAWWLGLS  174 (184)
Q Consensus       158 I~a~G~~s~~~~~~~~~  174 (184)
                      |+|||.+|.+|+.++..
T Consensus       156 VgADG~~S~vR~~~~~~  172 (392)
T PRK08243        156 AGCDGFHGVSRASIPAG  172 (392)
T ss_pred             EECCCCCCchhhhcCcc
Confidence            99999999999988654

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.91  E-value=6.9e-23  Score=153.03  Aligned_cols=165  Identities=21%  Similarity=0.325  Sum_probs=124.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC-----ccceeeecccHHHHHHHcCChHHHHhc-CCCccceE
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG-----TGAAISFAPNAWLALDALGVSHKLASI-YPPVNRIS   77 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   77 (184)
                      +++||+||||||+|+++|+.|++.|++|+|+|+.+.+..     ..+...+.+.+.+.++.+|+++++... ..+...+.
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   83 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR   83 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence            368999999999999999999999999999999877543     235578899999999999999887543 33445555


Q ss_pred             EEecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--C-CeeeeCceEEEEeccCCCCCcceEEEEecCcEEE
Q 030042           78 VTNLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--N-GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVK  153 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~  153 (184)
                      +......   .+.+.......+ ..+.+++..+.+.|.+.+.  + ++++ +++++++...+   +. +.+.+.+|.++.
T Consensus        84 ~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~---~~-~~v~~~~g~~~~  155 (388)
T PRK07608         84 VFGDAHA---RLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP---DA-ATLTLADGQVLR  155 (388)
T ss_pred             EEECCCc---eeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC---Ce-EEEEECCCCEEE
Confidence            5443221   222221111112 2356788899999888764  4 7777 99999998665   44 778888888899


Q ss_pred             eeEEEecCCcchHHHhhhCCCCC
Q 030042          154 TKFLIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       154 a~~vI~a~G~~s~~~~~~~~~~~  176 (184)
                      ||+||+|+|.+|.+++.++...+
T Consensus       156 a~~vI~adG~~S~vr~~~~~~~~  178 (388)
T PRK07608        156 ADLVVGADGAHSWVRSQAGIKAE  178 (388)
T ss_pred             eeEEEEeCCCCchHHHhcCCCcc
Confidence            99999999999999999987654

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.90  E-value=4e-22  Score=148.83  Aligned_cols=164  Identities=18%  Similarity=0.252  Sum_probs=117.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC--CccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR--GTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      .+||+||||||+|+++|+.|++.|++|+|+|+.+...  ...++..+.+.+.+.|+++|+++++.....+...+.+.+. 
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~-   80 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD-   80 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC-
Confidence            4799999999999999999999999999999987532  2234455888899999999999999887777776766542 


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe-cCc--EEEeeEE
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV-DGT--IVKTKFL  157 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-~g~--~~~a~~v  157 (184)
                       .......+.... .+.....+.+..+...|.+.+.  ++.++++++++.+...++  +. ..|... +|+  +++||+|
T Consensus        81 -~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~--~~-~~V~~~~~g~~~~i~adlv  155 (390)
T TIGR02360        81 -GQRFRIDLKALT-GGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAG--DR-PYVTFERDGERHRLDCDFI  155 (390)
T ss_pred             -CEEEEEeccccC-CCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCC--Cc-cEEEEEECCeEEEEEeCEE
Confidence             223334443221 1112223345566666766553  678899998888765331  33 445554 664  6899999


Q ss_pred             EecCCcchHHHhhhCCC
Q 030042          158 IGCDGIHSTVAWWLGLS  174 (184)
Q Consensus       158 I~a~G~~s~~~~~~~~~  174 (184)
                      |+|||.+|.+|+.++..
T Consensus       156 IGADG~~S~VR~~l~~~  172 (390)
T TIGR02360       156 AGCDGFHGVSRASIPAE  172 (390)
T ss_pred             EECCCCchhhHHhcCcc
Confidence            99999999999987543

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.90  E-value=1.8e-22  Score=152.15  Aligned_cols=168  Identities=18%  Similarity=0.248  Sum_probs=107.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc-ceeeecccHHHHHHHcCChHHHHhc-----CCCcc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG-AAISFAPNAWLALDALGVSHKLASI-----YPPVN   74 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~   74 (184)
                      |++++|||+||||||+|+++|+.|++.|++|+|+||.+.++... .+-.+.....   +.+  ++.+...     .....
T Consensus         1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~---e~l--~~~~~~~~~~~~~~~~~   75 (428)
T PRK10157          1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSL---EHI--IPGFADSAPVERLITHE   75 (428)
T ss_pred             CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhH---HHH--hhhhhhcCcccceeeee
Confidence            77778999999999999999999999999999999987765432 1212222222   221  1211111     01111


Q ss_pred             ceEEEecCCCceeeeecCCCC--CCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCc
Q 030042           75 RISVTNLGTGATQETSLTGKF--GDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT  150 (184)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~  150 (184)
                      .+.+.....  .....+....  ......+.+.|.++.++|.+.+.  |++++.+++|+++...+   .. +.+...++.
T Consensus        76 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~---g~-v~~v~~~g~  149 (428)
T PRK10157         76 KLAFMTEKS--AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD---GK-VVGVEADGD  149 (428)
T ss_pred             eEEEEcCCC--ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC---CE-EEEEEcCCc
Confidence            122221111  1122222111  11123467889999999998874  89999999999988654   22 333344666


Q ss_pred             EEEeeEEEecCCcchHHHhhhCCCCCccc
Q 030042          151 IVKTKFLIGCDGIHSTVAWWLGLSEPLNV  179 (184)
Q Consensus       151 ~~~a~~vI~a~G~~s~~~~~~~~~~~~~~  179 (184)
                      ++.|++||+|+|.+|.+++.+++..+..+
T Consensus       150 ~i~A~~VI~A~G~~s~l~~~lgl~~~~~~  178 (428)
T PRK10157        150 VIEAKTVILADGVNSILAEKLGMAKRVKP  178 (428)
T ss_pred             EEECCEEEEEeCCCHHHHHHcCCCCCCCC
Confidence            89999999999999999998887654333

>PRK06996 hypothetical protein; Provisional

Probab=99.90  E-value=8.8e-22  Score=147.46  Aligned_cols=167  Identities=19%  Similarity=0.166  Sum_probs=121.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCC----CCeEEEeccCCC--CCccceeeecccHHHHHHHcCChHHHHhcCCCcc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLG----VEPLVLEKSDGL--RGTGAAISFAPNAWLALDALGVSHKLASIYPPVN   74 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g----~~v~vie~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (184)
                      |..+.+||+||||||+|+++|+.|+++|    ++|+|+|+.+..  ....++..+.+.+.++|+.+|+|+.   ...+..
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~---~~~~~~   83 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIE   83 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh---cCCccc
Confidence            4446789999999999999999999987    469999997643  2345889999999999999999986   334445


Q ss_pred             ceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC---
Q 030042           75 RISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG---  149 (184)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g---  149 (184)
                      .+.++.........+...... ..+..+.+++..+.+.|.+.+.  ++++++++++++++..+   ++ +++...++   
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~-~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~---~~-v~v~~~~~~g~  158 (398)
T PRK06996         84 HIHVSQRGHFGRTLIDRDDHD-VPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA---DG-VTLALGTPQGA  158 (398)
T ss_pred             EEEEecCCCCceEEecccccC-CCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC---Ce-EEEEECCCCcc
Confidence            555543221111222222111 1113457888999999988875  78899999999997765   44 77777654   


Q ss_pred             cEEEeeEEEecCCc-chHHHhhhCCCC
Q 030042          150 TIVKTKFLIGCDGI-HSTVAWWLGLSE  175 (184)
Q Consensus       150 ~~~~a~~vI~a~G~-~s~~~~~~~~~~  175 (184)
                      ++++||+||+|||. +|.+++.++...
T Consensus       159 ~~i~a~lvIgADG~~~s~~r~~~~~~~  185 (398)
T PRK06996        159 RTLRARIAVQAEGGLFHDQKADAGDSA  185 (398)
T ss_pred             eEEeeeEEEECCCCCchHHHHHcCCCc
Confidence            58999999999996 567778776654

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.89  E-value=1.8e-21  Score=151.17  Aligned_cols=176  Identities=30%  Similarity=0.381  Sum_probs=125.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC-CCc---cceeeecccHHHHHHHcCC--hHHHHhcCCCc-cce
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL-RGT---GAAISFAPNAWLALDALGV--SHKLASIYPPV-NRI   76 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~-~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~   76 (184)
                      +.++|+|||||++|+++|+.|+++|++|+|+||.+.. ...   ++++.+.+.+++.|+.+|+  .+++.+..... ..+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i  159 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI  159 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence            3589999999999999999999999999999997632 222   2568899999999999985  35555443322 122


Q ss_pred             E-EEecCCCce-eeeec-CCCCCCCC-CCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEE
Q 030042           77 S-VTNLGTGAT-QETSL-TGKFGDGS-GPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIV  152 (184)
Q Consensus        77 ~-~~~~~~~~~-~~~~~-~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~  152 (184)
                      . +.....+.. ..+.. ......+. ....+.|..|.+.|.+......++++++|++++..+   +. +++.+.+|+++
T Consensus       160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~---d~-VtV~~~dG~ti  235 (668)
T PLN02927        160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSG---DK-VTVVLENGQRY  235 (668)
T ss_pred             eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeC---CE-EEEEECCCCEE
Confidence            1 111112211 11111 10011222 345789999999998887544478899999998765   44 78888999889


Q ss_pred             EeeEEEecCCcchHHHhhh-CCCCCcccceec
Q 030042          153 KTKFLIGCDGIHSTVAWWL-GLSEPLNVNIGC  183 (184)
Q Consensus       153 ~a~~vI~a~G~~s~~~~~~-~~~~~~~~~~~~  183 (184)
                      .+|+||+|+|.+|.+|+.+ +...+.|+++.|
T Consensus       236 ~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~  267 (668)
T PLN02927        236 EGDLLVGADGIWSKVRNNLFGRSEATYSGYTC  267 (668)
T ss_pred             EcCEEEECCCCCcHHHHHhcCCCCCcccceEE
Confidence            9999999999999998866 666678887765

>PTZ00367 squalene epoxidase; Provisional

Probab=99.89  E-value=1e-21  Score=151.32  Aligned_cols=167  Identities=20%  Similarity=0.205  Sum_probs=119.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC-CCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG-LRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+... ......+..+.+.+.+.|+++|+++.+.....+..++.+++.+
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~~  111 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDHK  111 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEECC
Confidence            468999999999999999999999999999999762 2223456678999999999999999988877777777776643


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC-----CCCeeeeCceEEEEeccCCC----CCcceEEEEec-----
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL-----PNGTIHFSSKIAAIDSQTHD----GSSPVFIHLVD-----  148 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~i~~~~~v~~~~~~~~~----~~~~~~v~~~~-----  148 (184)
                      . .....++.    .+.....+++..+.+.|.+.+     ++++++ +.+|+++...+..    ..+ +++...+     
T Consensus       112 G-~~~~i~~~----~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~g-V~~~~~~~~~~~  184 (567)
T PTZ00367        112 G-KQVKLPYG----AGASGVSFHFGDFVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAYG-VEYTEAEKYDVP  184 (567)
T ss_pred             C-CEEEecCC----CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeEE-EEEecCCccccc
Confidence            2 22223332    112233556777777777655     377775 4578887654321    112 4444433     


Q ss_pred             ------------------CcEEEeeEEEecCCcchHHHhhhCCCCCc
Q 030042          149 ------------------GTIVKTKFLIGCDGIHSTVAWWLGLSEPL  177 (184)
Q Consensus       149 ------------------g~~~~a~~vI~a~G~~s~~~~~~~~~~~~  177 (184)
                                        +++++||+||+|||.+|.+|+.++...+.
T Consensus       185 ~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~  231 (567)
T PTZ00367        185 ENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPA  231 (567)
T ss_pred             ccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCC
Confidence                              56899999999999999999999765443

>PLN02985 squalene monooxygenase

Probab=99.89  E-value=9.5e-22  Score=150.64  Aligned_cols=168  Identities=21%  Similarity=0.251  Sum_probs=120.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhc-CCCccceEEEecC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASI-YPPVNRISVTNLG   82 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
                      ..+||+|||||++|+++|+.|++.|++|+|+||.......+.+..+.+.+.+.++++|+++.+... ..+...+..+.  
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~--  119 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK--  119 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE--
Confidence            468999999999999999999999999999999865555567888999999999999999988764 33455555543  


Q ss_pred             CCceeeeecCCCC---CCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCc-ceEEEEecCc--EEE
Q 030042           83 TGATQETSLTGKF---GDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSS-PVFIHLVDGT--IVK  153 (184)
Q Consensus        83 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~-~~~v~~~~g~--~~~  153 (184)
                      +++....++....   ........+++.++.+.|.+.+.   +++++.+ +++++...+  +.. .+++.+.+|+  ++.
T Consensus       120 ~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~~  196 (514)
T PLN02985        120 DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTAL  196 (514)
T ss_pred             CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEEE
Confidence            2222233333211   11123357788899999888763   6777755 677776544  222 1344445664  466


Q ss_pred             eeEEEecCCcchHHHhhhCCCCC
Q 030042          154 TKFLIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       154 a~~vI~a~G~~s~~~~~~~~~~~  176 (184)
                      ||+||+|||.+|.+|+.++.+.+
T Consensus       197 AdLVVgADG~~S~vR~~l~~~~~  219 (514)
T PLN02985        197 APLTVVCDGCYSNLRRSLNDNNA  219 (514)
T ss_pred             CCEEEECCCCchHHHHHhccCCC
Confidence            99999999999999999876543

>PRK10015 oxidoreductase; Provisional

Probab=99.89  E-value=9.9e-22  Score=148.01  Aligned_cols=168  Identities=18%  Similarity=0.231  Sum_probs=105.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc-ceeeecccHHHHHHHcCChHH-HHhcCCCccceEE
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG-AAISFAPNAWLALDALGVSHK-LASIYPPVNRISV   78 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   78 (184)
                      |++.+|||+||||||+|+++|+.|++.|++|+||||.+.++... ++..+.....+.+.. ++... ..+.......+.+
T Consensus         1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~   79 (429)
T PRK10015          1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERKVTREKISF   79 (429)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccccccceeEEE
Confidence            78778999999999999999999999999999999988765432 222222222222200 11100 0011111122222


Q ss_pred             EecCCCceeeeecCCCCC--CCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042           79 TNLGTGATQETSLTGKFG--DGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKT  154 (184)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a  154 (184)
                      .....  ....++.....  .....+.+.|..+.++|.+.+.  +++++.+++|+++...+   .. +.....++.++.|
T Consensus        80 ~~~~~--~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~---~~-v~~v~~~~~~i~A  153 (429)
T PRK10015         80 LTEES--AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG---NK-VTGVQAGDDILEA  153 (429)
T ss_pred             EeCCC--ceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC---CE-EEEEEeCCeEEEC
Confidence            22111  12222221111  1113567889999999988774  89999999999988654   22 3322234457999


Q ss_pred             eEEEecCCcchHHHhhhCCCC
Q 030042          155 KFLIGCDGIHSTVAWWLGLSE  175 (184)
Q Consensus       155 ~~vI~a~G~~s~~~~~~~~~~  175 (184)
                      +.||+|+|.+|.+++.+++..
T Consensus       154 ~~VI~AdG~~s~v~~~lg~~~  174 (429)
T PRK10015        154 NVVILADGVNSMLGRSLGMVP  174 (429)
T ss_pred             CEEEEccCcchhhhcccCCCc
Confidence            999999999999998887743

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.88  E-value=5.3e-21  Score=144.49  Aligned_cols=163  Identities=17%  Similarity=0.240  Sum_probs=108.7

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |+.+++||+||||||+|+++|+.|++.|++|+|+|+... ....++..++   ...++++++++.+...  ....+.+..
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~---~~~l~~lgl~~~~~~~--~i~~~~~~~  108 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIP---LCMVGEFDLPLDIIDR--KVTKMKMIS  108 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCcccccc---HhHHhhhcCcHHHHHH--HhhhheEec
Confidence            455679999999999999999999999999999999753 2233444443   3566777877665442  233344443


Q ss_pred             cCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec-------C--
Q 030042           81 LGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD-------G--  149 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~-------g--  149 (184)
                      +..   ....+...........+++|..+.++|.+.+.  |++++.+ +++++...++.++. +.|.+.+       |  
T Consensus       109 p~~---~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~-~~v~~~~~~~~~~~g~~  183 (450)
T PLN00093        109 PSN---VAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGP-YVIHYTSYDSGSGAGTP  183 (450)
T ss_pred             CCc---eEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCc-EEEEEEeccccccCCCc
Confidence            222   12222211111223346899999999998774  7888765 57777643211123 5554422       3  


Q ss_pred             cEEEeeEEEecCCcchHHHhhhCCC
Q 030042          150 TIVKTKFLIGCDGIHSTVAWWLGLS  174 (184)
Q Consensus       150 ~~~~a~~vI~a~G~~s~~~~~~~~~  174 (184)
                      .+++||+||+|||.+|.+++.++.+
T Consensus       184 ~~v~a~~VIgADG~~S~vrr~lg~~  208 (450)
T PLN00093        184 KTLEVDAVIGADGANSRVAKDIDAG  208 (450)
T ss_pred             cEEEeCEEEEcCCcchHHHHHhCCC
Confidence            4799999999999999999998865

>PRK11445 putative oxidoreductase; Provisional

Probab=99.87  E-value=5.9e-21  Score=140.73  Aligned_cols=156  Identities=22%  Similarity=0.232  Sum_probs=110.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC----CccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR----GTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      ++||+||||||+|+++|+.|++. ++|+|+|+.+...    ...++..+++.+.+.++.+|++........+ ....   
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-~~~~---   75 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-QIFA---   75 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-ccce---
Confidence            37999999999999999999999 9999999987543    2336778999999999999886321110000 0000   


Q ss_pred             cCCCceeeeecCC-C-CCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEE-ecCc--EEEe
Q 030042           81 LGTGATQETSLTG-K-FGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDGT--IVKT  154 (184)
Q Consensus        81 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g~--~~~a  154 (184)
                           .....+.. . ...+.....++|.++.+.|.+..+ ++++++++++++++..+   ++ +.+.+ .+|+  +++|
T Consensus        76 -----~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~---~~-~~v~~~~~g~~~~i~a  146 (351)
T PRK11445         76 -----VKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWRED---DG-YHVIFRADGWEQHITA  146 (351)
T ss_pred             -----eeEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcC---CE-EEEEEecCCcEEEEEe
Confidence                 01111111 0 011223346899999999988654 89999999999998765   44 66664 4564  6899


Q ss_pred             eEEEecCCcchHHHhhhCCC
Q 030042          155 KFLIGCDGIHSTVAWWLGLS  174 (184)
Q Consensus       155 ~~vI~a~G~~s~~~~~~~~~  174 (184)
                      |+||+|||.+|.+|+.++..
T Consensus       147 ~~vV~AdG~~S~vr~~l~~~  166 (351)
T PRK11445        147 RYLVGADGANSMVRRHLYPD  166 (351)
T ss_pred             CEEEECCCCCcHHhHHhcCC
Confidence            99999999999999887643

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.87  E-value=8.5e-21  Score=141.90  Aligned_cols=157  Identities=25%  Similarity=0.272  Sum_probs=110.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccce-eeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA-ISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      ++|||+|||+||+|+++|+.|++.|.+|+|+||...++....+ ..+.+..++.+.......    .........++.. 
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~----i~~~v~~~~~~~~-   76 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE----IERKVTGARIYFP-   76 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh----hheeeeeeEEEec-
Confidence            5799999999999999999999999999999999988776554 555555444432221101    1111222222222 


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEec
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGC  160 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a  160 (184)
                       .....+....     ...+.++|..+.++|.+.+.  |++++.++++.++..++   ++.+.....++.+++||+||+|
T Consensus        77 -~~~~~~~~~~-----~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~a~~vI~A  147 (396)
T COG0644          77 -GEKVAIEVPV-----GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED---DGVVVGVRAGDDEVRAKVVIDA  147 (396)
T ss_pred             -CCceEEecCC-----CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC---CcEEEEEEcCCEEEEcCEEEEC
Confidence             1111111111     24678999999999998885  89999999999999887   3313333344468999999999


Q ss_pred             CCcchHHHhhhCCC
Q 030042          161 DGIHSTVAWWLGLS  174 (184)
Q Consensus       161 ~G~~s~~~~~~~~~  174 (184)
                      +|.+|.+++.++..
T Consensus       148 dG~~s~l~~~lg~~  161 (396)
T COG0644         148 DGVNSALARKLGLK  161 (396)
T ss_pred             CCcchHHHHHhCCC
Confidence            99999999999877

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.87  E-value=1.7e-20  Score=135.23  Aligned_cols=155  Identities=25%  Similarity=0.305  Sum_probs=109.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      |||+|||||++|+++|+.|++.|++|+|+|+...+...+++..+.+.+++.+...+.. .    ........+... .+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~~~~~~-~~~   74 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-I----VNLVRGARFFSP-NGD   74 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-h----hhheeeEEEEcC-CCc
Confidence            6999999999999999999999999999999987766667777777777766544321 1    111122222221 111


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec-CcEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD-GTIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~-g~~~~a~~vI~a~G  162 (184)
                      ......     .......+++.++.+.|.+.+.  +++++++++++++...+   +. +.+...+ +.++++|+||+|+|
T Consensus        75 ~~~~~~-----~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~---~~-~~~~~~~~~~~~~a~~vv~a~G  145 (295)
T TIGR02032        75 SVEIPI-----ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD---DR-VVVIVRGGEGTVTAKIVIGADG  145 (295)
T ss_pred             EEEecc-----CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC---CE-EEEEEcCccEEEEeCEEEECCC
Confidence            111111     1224567899999999988875  79999999999998765   33 4454443 45899999999999


Q ss_pred             cchHHHhhhCCCC
Q 030042          163 IHSTVAWWLGLSE  175 (184)
Q Consensus       163 ~~s~~~~~~~~~~  175 (184)
                      .+|.+++.+++..
T Consensus       146 ~~s~~~~~~~~~~  158 (295)
T TIGR02032       146 SRSIVAKKLGLRK  158 (295)
T ss_pred             cchHHHHhcCCCC
Confidence            9999998887653

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.85  E-value=5.9e-20  Score=137.21  Aligned_cols=154  Identities=20%  Similarity=0.355  Sum_probs=106.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEecc-CCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKS-DGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      |||+||||||+|+++|+.|++.|++|+|+|+. +.+.  .++..+++   ..++.+++.+++...  .+....+..+...
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~--~cg~~i~~---~~l~~l~i~~~~~~~--~~~~~~~~~~~~~   73 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIK--PCGGAIPP---CLIEEFDIPDSLIDR--RVTQMRMISPSRV   73 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcC--cCcCCcCH---hhhhhcCCchHHHhh--hcceeEEEcCCCc
Confidence            69999999999999999999999999999997 3332  24444443   456777777665543  3445555443321


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec------C--cEEEe
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD------G--TIVKT  154 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~------g--~~~~a  154 (184)
                       ........   .......+++..+.++|.+.+.  |++++.. +|+++...+   +. +.+.+.+      +  .++.|
T Consensus        74 -~~~~~~~~---~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~---~~-~~v~~~~~~~~~~~~~~~i~a  144 (388)
T TIGR02023        74 -PIKVTIPS---EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR---DG-VTLTYRTPKKGAGGEKGSVEA  144 (388)
T ss_pred             -eeeeccCC---CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC---Ce-EEEEEEeccccCCCcceEEEe
Confidence             11111110   1112236899999999988764  7888654 688987765   33 5565542      2  47999


Q ss_pred             eEEEecCCcchHHHhhhCCCC
Q 030042          155 KFLIGCDGIHSTVAWWLGLSE  175 (184)
Q Consensus       155 ~~vI~a~G~~s~~~~~~~~~~  175 (184)
                      |+||+|+|.+|.+++.++++.
T Consensus       145 ~~VI~AdG~~S~v~r~lg~~~  165 (388)
T TIGR02023       145 DVVIGADGANSPVAKELGLPK  165 (388)
T ss_pred             CEEEECCCCCcHHHHHcCCCC
Confidence            999999999999999988763

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.84  E-value=3.1e-19  Score=133.55  Aligned_cols=158  Identities=16%  Similarity=0.253  Sum_probs=103.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      +||+||||||+|+++|+.|++.|++|+|+|+..... ..++..++   ...++++++++.+...  ....+.+..+..  
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~-~~cg~~i~---~~~l~~~g~~~~~~~~--~i~~~~~~~p~~--   72 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA-KPCGGAIP---LCMVDEFALPRDIIDR--RVTKMKMISPSN--   72 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC-CCcccccc---HhhHhhccCchhHHHh--hhceeEEecCCc--
Confidence            599999999999999999999999999999975432 22344443   3556777777655442  233344333222  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE--ec-----C--cEEEe
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL--VD-----G--TIVKT  154 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~~-----g--~~~~a  154 (184)
                       ....+............++|..+.++|.+.+.  |++++.+ +++++....+.++. +.|..  .+     |  .+++|
T Consensus        73 -~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~~~~~~~~~-~~v~~~~~~~~~~~g~~~~i~a  149 (398)
T TIGR02028        73 -IAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLING-LVTKLSLPADADDP-YTLHYISSDSGGPSGTRCTLEV  149 (398)
T ss_pred             -eEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEEeccCCCce-EEEEEeeccccccCCCccEEEe
Confidence             22222211111112346899999999998875  8888777 47777542211233 44442  22     3  47999


Q ss_pred             eEEEecCCcchHHHhhhCCC
Q 030042          155 KFLIGCDGIHSTVAWWLGLS  174 (184)
Q Consensus       155 ~~vI~a~G~~s~~~~~~~~~  174 (184)
                      ++||+|||.+|.+++.++.+
T Consensus       150 ~~VIgADG~~S~v~~~~g~~  169 (398)
T TIGR02028       150 DAVIGADGANSRVAKEIDAG  169 (398)
T ss_pred             CEEEECCCcchHHHHHhCCC
Confidence            99999999999999998865

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.83  E-value=1e-19  Score=131.19  Aligned_cols=163  Identities=24%  Similarity=0.242  Sum_probs=105.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc------cc-eeeecccHHHHHHHcCC-hHHHH---hcCC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT------GA-AISFAPNAWLALDALGV-SHKLA---SIYP   71 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~------~~-~~~~~~~~~~~~~~~~~-~~~~~---~~~~   71 (184)
                      |+.+||+||||||+|+++|..++++|.+|+|||+.+.++..      |+ ...-.....+++....- -..+.   ..+.
T Consensus         1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft   80 (408)
T COG2081           1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT   80 (408)
T ss_pred             CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence            46799999999999999999999999999999999887542      11 22222223344443320 01221   2222


Q ss_pred             CccceEEEecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec
Q 030042           72 PVNRISVTNLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD  148 (184)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~  148 (184)
                      +.+.+.+.....-   .+....   .|. .......+.+.+.|..+++  +++++.+++|.+++..+   .. ..+.+++
T Consensus        81 ~~d~i~~~e~~Gi---~~~e~~---~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~---~~-f~l~t~~  150 (408)
T COG2081          81 PEDFIDWVEGLGI---ALKEED---LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD---SG-FRLDTSS  150 (408)
T ss_pred             HHHHHHHHHhcCC---eeEEcc---CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC---ce-EEEEcCC
Confidence            2222222111111   111111   111 1222445778888888875  89999999999999986   45 8999999


Q ss_pred             CcEEEeeEEEecCCcch-----------HHHhhhCCCC
Q 030042          149 GTIVKTKFLIGCDGIHS-----------TVAWWLGLSE  175 (184)
Q Consensus       149 g~~~~a~~vI~a~G~~s-----------~~~~~~~~~~  175 (184)
                      |++++||.+|+|+|+.|           ++++.+|...
T Consensus       151 g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I  188 (408)
T COG2081         151 GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI  188 (408)
T ss_pred             CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence            98999999999999544           3567777653

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.80  E-value=1.5e-18  Score=128.31  Aligned_cols=170  Identities=25%  Similarity=0.392  Sum_probs=104.3

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCcc---------ceeeecccHHH-HHHHcC------ChH
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTG---------AAISFAPNAWL-ALDALG------VSH   64 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~---------~~~~~~~~~~~-~~~~~~------~~~   64 (184)
                      |.++||+|||||+.|+++|++|+++.  ++|+|+||.+.++...         .+..+.+.... -+...|      +..
T Consensus         1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k   80 (429)
T COG0579           1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK   80 (429)
T ss_pred             CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  8999999987653211         12223332110 011000      000


Q ss_pred             HHHhcCCCccceEEEecC-------------------------CCceeeee--cC--CC-CCCCCCCeeeeHHHHHHHHH
Q 030042           65 KLASIYPPVNRISVTNLG-------------------------TGATQETS--LT--GK-FGDGSGPRFIHRKKLLQTLA  114 (184)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~--~~--~~-~~~~~~~~~~~~~~l~~~l~  114 (184)
                      ++.-.+.....+.+.+..                         ..+...+.  ..  .. ..+-+....++..++...+.
T Consensus        81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~  160 (429)
T COG0579          81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA  160 (429)
T ss_pred             HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence            000000011111111111                         11111111  00  00 01223455778888888888


Q ss_pred             hhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcE-EEeeEEEecCCcch-HHHhhhCCCC
Q 030042          115 DELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI-VKTKFLIGCDGIHS-TVAWWLGLSE  175 (184)
Q Consensus       115 ~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~-~~a~~vI~a~G~~s-~~~~~~~~~~  175 (184)
                      +.+.  |+++++|++|+++++.++  .. +.+.+.+|++ ++|++||+|.|..+ +++++++++.
T Consensus       161 e~a~~~g~~i~ln~eV~~i~~~~d--g~-~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~  222 (429)
T COG0579         161 EEAQANGVELRLNTEVTGIEKQSD--GV-FVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE  222 (429)
T ss_pred             HHHHHcCCEEEecCeeeEEEEeCC--ce-EEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence            8774  899999999999999872  24 7788888865 99999999999988 6899998775

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.78  E-value=2.6e-18  Score=120.99  Aligned_cols=136  Identities=21%  Similarity=0.271  Sum_probs=90.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc--ceeee-----cccHHHHHHHcCChHHHHhcCCCccce
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG--AAISF-----APNAWLALDALGVSHKLASIYPPVNRI   76 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
                      .++||+||||||+|+++|+.|++.|++|+|+|+...+++.-  .+..+     .+...++++++++         ++.  
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv---------~~~--   92 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGI---------RYK--   92 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCC---------Cce--
Confidence            46899999999999999999999999999999988765421  11111     1112222222221         110  


Q ss_pred             EEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe-------
Q 030042           77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV-------  147 (184)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-------  147 (184)
                         ..                ....+.+++..+...|.+.+.  +++++++++|+++...++ +.. ..+...       
T Consensus        93 ---~~----------------~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V-~Gvv~~~~~v~~~  151 (257)
T PRK04176         93 ---EV----------------EDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRV-AGVVINWTPVEMA  151 (257)
T ss_pred             ---ee----------------cCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcE-EEEEEcccccccc
Confidence               00                011235677888888887764  899999999999987542 122 222221       


Q ss_pred             ----cCcEEEeeEEEecCCcchHHHhhh
Q 030042          148 ----DGTIVKTKFLIGCDGIHSTVAWWL  171 (184)
Q Consensus       148 ----~g~~~~a~~vI~a~G~~s~~~~~~  171 (184)
                          +..+++|++||+|||+++.+.+.+
T Consensus       152 g~~~~~~~i~Ak~VI~ATG~~a~v~~~l  179 (257)
T PRK04176        152 GLHVDPLTIEAKAVVDATGHDAEVVSVL  179 (257)
T ss_pred             CCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence                224799999999999999876655

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.77  E-value=1.6e-17  Score=116.63  Aligned_cols=136  Identities=22%  Similarity=0.341  Sum_probs=88.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccce--eee-----cccHHHHHHHcCChHHHHhcCCCccce
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA--ISF-----APNAWLALDALGVSHKLASIYPPVNRI   76 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
                      .++||+||||||+|+++|+.|++.|.+|+|+||...+++...+  ..+     .....++++++++.             
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~-------------   86 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR-------------   86 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC-------------
Confidence            4689999999999999999999999999999999876533211  111     11112222222110             


Q ss_pred             EEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe-------
Q 030042           77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV-------  147 (184)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-------  147 (184)
                                    +.   ..+......++.++.+.|.+.+.  +++++++++|.++...++.... ..|.+.       
T Consensus        87 --------------~~---~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V-~GVv~~~~~v~~~  148 (254)
T TIGR00292        87 --------------YE---DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGV-AGVVINWSAIELA  148 (254)
T ss_pred             --------------ee---eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCce-EEEEeCCcccccc
Confidence                          00   01112234567788888877664  8999999999999876521012 333332       


Q ss_pred             ----cCcEEEeeEEEecCCcchHHHhh
Q 030042          148 ----DGTIVKTKFLIGCDGIHSTVAWW  170 (184)
Q Consensus       148 ----~g~~~~a~~vI~a~G~~s~~~~~  170 (184)
                          +..++.|++||.|||+.+.+.+.
T Consensus       149 g~~~d~~~i~Ak~VVdATG~~a~v~~~  175 (254)
T TIGR00292       149 GLHVDPLTQRSRVVVDATGHDAEIVAV  175 (254)
T ss_pred             CCCCCCEEEEcCEEEEeecCCchHHHH
Confidence                12478999999999988765443

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PLN02463 lycopene beta cyclase

Probab=99.75  E-value=5e-17  Score=122.63  Aligned_cols=144  Identities=18%  Similarity=0.191  Sum_probs=97.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      .+||+||||||+|+++|+.|++.|++|.|+|+.+.... .+....+   ...++.+++.+.+....   ....+......
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~-p~~~g~w---~~~l~~lgl~~~l~~~w---~~~~v~~~~~~  100 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW-PNNYGVW---VDEFEALGLLDCLDTTW---PGAVVYIDDGK  100 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh-ccccchH---HHHHHHCCcHHHHHhhC---CCcEEEEeCCC
Confidence            58999999999999999999999999999999653211 1111111   23456666665553321   11111111110


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                       .        ......+..+++.++.+.|.+.+.  +++++ ..+|++++..+   +. +.|.+++|+++.|++||+|+|
T Consensus       101 -~--------~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~---~~-~~V~~~dG~~i~A~lVI~AdG  166 (447)
T PLN02463        101 -K--------KDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE---SK-SLVVCDDGVKIQASLVLDATG  166 (447)
T ss_pred             -C--------ccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC---Ce-EEEEECCCCEEEcCEEEECcC
Confidence             0        011123456889999999988775  67775 57899988765   44 778888998999999999999


Q ss_pred             cchHHHh
Q 030042          163 IHSTVAW  169 (184)
Q Consensus       163 ~~s~~~~  169 (184)
                      .+|.+.+
T Consensus       167 ~~s~l~~  173 (447)
T PLN02463        167 FSRCLVQ  173 (447)
T ss_pred             CCcCccC
Confidence            9987643

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.73  E-value=6.2e-17  Score=116.05  Aligned_cols=167  Identities=22%  Similarity=0.206  Sum_probs=117.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      ..+||+|||+|++|.++|+.|++.|.+|.||||+-.....--|..+.|.....|.++|+.+-++....+.-.-..... +
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk-~  122 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK-D  122 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe-C
Confidence            357999999999999999999999999999999876555555667788889999999999888776554332222222 3


Q ss_pred             CceeeeecCCCCCCC-CCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCc--EEEeeEE
Q 030042           84 GATQETSLTGKFGDG-SGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT--IVKTKFL  157 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~--~~~a~~v  157 (184)
                      ++....+|+.....+ +.....+..++.+.|++.+.   ++++..+ +|.++...++...+ ++.+++.|+  +..|-.-
T Consensus       123 gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkG-V~yk~k~gee~~~~ApLT  200 (509)
T KOG1298|consen  123 GKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKG-VTYKNKEGEEVEAFAPLT  200 (509)
T ss_pred             CceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEe-EEEecCCCceEEEecceE
Confidence            334445554332222 23456667789999988873   7766655 56666655521223 555555554  5668889


Q ss_pred             EecCCcchHHHhhhCC
Q 030042          158 IGCDGIHSTVAWWLGL  173 (184)
Q Consensus       158 I~a~G~~s~~~~~~~~  173 (184)
                      |+|||..|.+|+.+.-
T Consensus       201 vVCDGcfSnlRrsL~~  216 (509)
T KOG1298|consen  201 VVCDGCFSNLRRSLCD  216 (509)
T ss_pred             EEecchhHHHHHHhcC
Confidence            9999999999998854

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.73  E-value=3.5e-18  Score=127.23  Aligned_cols=139  Identities=22%  Similarity=0.274  Sum_probs=75.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc------cceeeec----------------ccHHHHHHHcCC-
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT------GAAISFA----------------PNAWLALDALGV-   62 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~------~~~~~~~----------------~~~~~~~~~~~~-   62 (184)
                      |||+|||||++|+++|+.|++.|.+|+|+||++..+..      |+.....                .-....++.+.. 
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            79999999999999999999999999999999877421      2211100                011222333321 


Q ss_pred             --hHHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCC
Q 030042           63 --SHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDG  138 (184)
Q Consensus        63 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~  138 (184)
                        ...+.+.+.+     .....++  ..++           .......+.+.|.+.+.  +++++++++|.+++..+   
T Consensus        81 d~~~ff~~~Gv~-----~~~~~~g--r~fP-----------~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~---  139 (409)
T PF03486_consen   81 DLIAFFEELGVP-----TKIEEDG--RVFP-----------KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE---  139 (409)
T ss_dssp             HHHHHHHHTT-------EEE-STT--EEEE-----------TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET---
T ss_pred             HHHHHHHhcCCe-----EEEcCCC--EECC-----------CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC---
Confidence              1222222221     1110110  1111           12235677777777765  89999999999999876   


Q ss_pred             CcceEEEEecCcEEEeeEEEecCCcch
Q 030042          139 SSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus       139 ~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                      +..+.|+++++..+.||.||+|+|+.|
T Consensus       140 ~~~f~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  140 DGVFGVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             TEEEEEEETTTEEEEESEEEE----SS
T ss_pred             CceeEeeccCcccccCCEEEEecCCCC
Confidence            323888887778999999999999754

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.73  E-value=6.6e-17  Score=120.46  Aligned_cols=158  Identities=19%  Similarity=0.226  Sum_probs=91.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccce-----e---eec--ccHHH-HHHHcCChHHHHhcCC-
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA-----I---SFA--PNAWL-ALDALGVSHKLASIYP-   71 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~-----~---~~~--~~~~~-~~~~~~~~~~~~~~~~-   71 (184)
                      +++||+|||||++|+++|++|+++|.+|+|+|+.......+.+     .   .+.  +...+ ..+....+.++.+... 
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~   81 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGE   81 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999999997644211111     1   011  11111 1122223333322110 


Q ss_pred             C-c--cceEEEecCCCce--------------eee--------ecCCCC-------CCCCCCeeeeHHHHHHHHHhhCC-
Q 030042           72 P-V--NRISVTNLGTGAT--------------QET--------SLTGKF-------GDGSGPRFIHRKKLLQTLADELP-  118 (184)
Q Consensus        72 ~-~--~~~~~~~~~~~~~--------------~~~--------~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~-  118 (184)
                      . +  .+.........+.              .++        .++...       ...+...++++.++...+.+.+. 
T Consensus        82 ~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~  161 (376)
T PRK11259         82 PLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLARE  161 (376)
T ss_pred             ccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHH
Confidence            0 0  0111111000000              000        000000       01122346777888877766653 


Q ss_pred             -CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          119 -NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       119 -~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                       +++++.+++|++++..+   .. +.|.+++| ++.+|.||+|+|+++.
T Consensus       162 ~gv~i~~~~~v~~i~~~~---~~-~~v~~~~g-~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        162 AGAELLFNEPVTAIEADG---DG-VTVTTADG-TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             CCCEEECCCEEEEEEeeC---Ce-EEEEeCCC-EEEeeEEEEecCcchh
Confidence             89999999999998865   44 77888887 7999999999999864

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.72  E-value=9.1e-17  Score=119.88  Aligned_cols=169  Identities=20%  Similarity=0.235  Sum_probs=99.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC--Cccc---eee---ecccH--HHHHHHcCChHHHHhcC-CC--
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR--GTGA---AIS---FAPNA--WLALDALGVSHKLASIY-PP--   72 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~--~~~~---~~~---~~~~~--~~~~~~~~~~~~~~~~~-~~--   72 (184)
                      |||+|||||++|+++|++|+++|.+|+|+|+.....  +.+.   +..   +....  .-..+...+|..+.+.. ..  
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~   80 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH   80 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence            699999999999999999999999999999975432  1111   110   11110  11112223344333211 00  


Q ss_pred             -ccceEEEecCCCc--------------eee--------eecCCCC-------CCCCCCeeeeHHHHHHHHHhhCC--CC
Q 030042           73 -VNRISVTNLGTGA--------------TQE--------TSLTGKF-------GDGSGPRFIHRKKLLQTLADELP--NG  120 (184)
Q Consensus        73 -~~~~~~~~~~~~~--------------~~~--------~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~--~~  120 (184)
                       ..+.......+..              ..+        ..++...       ...+...++++..+.+.|.+.+.  ++
T Consensus        81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g~  160 (380)
T TIGR01377        81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGA  160 (380)
T ss_pred             eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcCC
Confidence             0111111111000              000        0000000       01123357788888888877654  89


Q ss_pred             eeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHhhhCCCCCccc
Q 030042          121 TIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLSEPLNV  179 (184)
Q Consensus       121 ~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~~~~~~  179 (184)
                      +++.+++|+++...+   .. +.|.+.++ ++.+|.||+|+|.++ .+++.+++..|..+
T Consensus       161 ~~~~~~~V~~i~~~~---~~-~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~~~~~  215 (380)
T TIGR01377       161 TVRDGTKVVEIEPTE---LL-VTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEIPLQP  215 (380)
T ss_pred             EEECCCeEEEEEecC---Ce-EEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCCCceE
Confidence            999999999998764   44 66777766 799999999999875 67887777666443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.72  E-value=3.4e-16  Score=117.27  Aligned_cols=165  Identities=23%  Similarity=0.332  Sum_probs=99.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCC--Cccceee-------ecccH-HHHH--HHcCChHHHHh-c
Q 030042            5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLR--GTGAAIS-------FAPNA-WLAL--DALGVSHKLAS-I   69 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~--~~~~~~~-------~~~~~-~~~~--~~~~~~~~~~~-~   69 (184)
                      ++||+|||||++|+++|++|+++  |.+|+|+|+...++  .++++.+       +.+.. ...+  +....+.++.+ .
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   81 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH   81 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence            48999999999999999999998  99999999986432  2222111       11111 1111  11222333321 1


Q ss_pred             CCCcc--ceEEEecCCCc----------------eee-e-------ecCCC----CCCCCCCeeeeHHHHHHHHHhhCC-
Q 030042           70 YPPVN--RISVTNLGTGA----------------TQE-T-------SLTGK----FGDGSGPRFIHRKKLLQTLADELP-  118 (184)
Q Consensus        70 ~~~~~--~~~~~~~~~~~----------------~~~-~-------~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~-  118 (184)
                      ...+.  +..+......+                ... +       .++..    ....+...++++..+.+.|.+.+. 
T Consensus        82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~  161 (393)
T PRK11728         82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQA  161 (393)
T ss_pred             CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHh
Confidence            11111  11111111000                000 0       00000    011223457788899998887774 


Q ss_pred             -CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHhhhCCC
Q 030042          119 -NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLS  174 (184)
Q Consensus       119 -~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~  174 (184)
                       |++++++++|+++...+   .. +.|.+.++ ++.||.||+|+|.++ .+.+.++.+
T Consensus       162 ~Gv~i~~~~~V~~i~~~~---~~-~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~  214 (393)
T PRK11728        162 RGGEIRLGAEVTALDEHA---NG-VVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE  214 (393)
T ss_pred             CCCEEEcCCEEEEEEecC---Ce-EEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence             88999999999998764   34 67788777 799999999999998 577777764

>PLN02697 lycopene epsilon cyclase

Probab=99.71  E-value=7.6e-16  Score=118.08  Aligned_cols=141  Identities=19%  Similarity=0.191  Sum_probs=92.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      ..+||+||||||+|+++|..|++.|++|+++|+.......   .+++.   ..++.+++.+.+...   +..........
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n---~GvW~---~~l~~lgl~~~i~~~---w~~~~v~~~~~  177 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN---YGVWE---DEFKDLGLEDCIEHV---WRDTIVYLDDD  177 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc---cccch---hHHHhcCcHHHHHhh---cCCcEEEecCC
Confidence            3589999999999999999999999999999985332211   22221   234555554433221   12222222111


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                       ...        ..+..+..+++..+.+.|.+.+.  ++++ ++++|+++...+   +....+.+.+|.++.|+.||+|+
T Consensus       178 -~~~--------~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~---~~~~vv~~~dG~~i~A~lVI~Ad  244 (529)
T PLN02697        178 -KPI--------MIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS---DGLRLVACEDGRVIPCRLATVAS  244 (529)
T ss_pred             -cee--------eccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC---CcEEEEEEcCCcEEECCEEEECC
Confidence             110        01223346889999999988775  7777 678999988764   33133455677889999999999


Q ss_pred             CcchH
Q 030042          162 GIHST  166 (184)
Q Consensus       162 G~~s~  166 (184)
                      |.+|.
T Consensus       245 G~~S~  249 (529)
T PLN02697        245 GAASG  249 (529)
T ss_pred             CcChh
Confidence            99993

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.71  E-value=2.9e-17  Score=121.30  Aligned_cols=167  Identities=28%  Similarity=0.307  Sum_probs=98.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC-ccc--eeeecc-------cHHHHH-HHcCChHHHHhcCC-Ccc
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG-TGA--AISFAP-------NAWLAL-DALGVSHKLASIYP-PVN   74 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~-~~~--~~~~~~-------~~~~~~-~~~~~~~~~~~~~~-~~~   74 (184)
                      ||+|||||++|+++|++|+++|.+|+|+|+.....+ ++.  +.....       ....+. +....+..+.+... +..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   80 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG   80 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence            899999999999999999999999999999843332 222  211111       001111 11222333322111 111


Q ss_pred             ----ceEEEecCCCcee------------------------eeecCCCC------CCCCCCeeeeHHHHHHHHHhhCC--
Q 030042           75 ----RISVTNLGTGATQ------------------------ETSLTGKF------GDGSGPRFIHRKKLLQTLADELP--  118 (184)
Q Consensus        75 ----~~~~~~~~~~~~~------------------------~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~--  118 (184)
                          .............                        ...++...      ...+...++++..+.+.|.+.+.  
T Consensus        81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~  160 (358)
T PF01266_consen   81 FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQRA  160 (358)
T ss_dssp             EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHHT
T ss_pred             cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHHh
Confidence                1111110000000                        00010010      01124567889999999998874  


Q ss_pred             CCeeeeCceEEEEeccCCCCCcceE-EEEecCcEEEeeEEEecCCcchH-HHhhhCCCCCcc
Q 030042          119 NGTIHFSSKIAAIDSQTHDGSSPVF-IHLVDGTIVKTKFLIGCDGIHST-VAWWLGLSEPLN  178 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~~~~~~-v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~~~~~~~  178 (184)
                      |++++.+++|+++...+   .. +. |.+.+|+ +.||.||+|+|.++. +.+.++.+.|..
T Consensus       161 Gv~i~~~~~V~~i~~~~---~~-v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~~~~~  217 (358)
T PF01266_consen  161 GVEIRTGTEVTSIDVDG---GR-VTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLDLPLR  217 (358)
T ss_dssp             T-EEEESEEEEEEEEET---TE-EEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTSSTEE
T ss_pred             hhhccccccccchhhcc---cc-cccccccccc-cccceeEecccccceeeeeccccccccc
Confidence            89999999999999886   44 66 9999997 999999999999885 566677655443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.71  E-value=5.4e-16  Score=115.29  Aligned_cols=139  Identities=21%  Similarity=0.285  Sum_probs=94.6

Q ss_pred             cEEEECCCHHHHHHHHHH--HhCCCCeEEEeccCCCC-CccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            7 DVVIIGAGIAGLATALAL--KRLGVEPLVLEKSDGLR-GTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l--~~~g~~v~vie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      ||+|||||++|+++|+.|  ++.|.+|+|||+.+... ...+.+.++......      .+.+.  ...+....+.....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~------~~~~v--~~~w~~~~v~~~~~   72 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP------LDSLV--SHRWSGWRVYFPDG   72 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc------hHHHH--heecCceEEEeCCC
Confidence            899999999999999999  77899999999977652 111233332221111      11111  11122333333222


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                      ...         .....+..+++.++.+.+.+.+. +..++++++|++++..+   .. +.|.+.+|++++|++||+|+|
T Consensus        73 ~~~---------~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~---~~-~~v~~~~g~~i~a~~VvDa~g  139 (374)
T PF05834_consen   73 SRI---------LIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETG---DG-VLVVLADGRTIRARVVVDARG  139 (374)
T ss_pred             ceE---------EcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecC---ce-EEEEECCCCEEEeeEEEECCC
Confidence            110         01124568999999999999987 56788899999999886   44 788899999999999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ..+.
T Consensus       140 ~~~~  143 (374)
T PF05834_consen  140 PSSP  143 (374)
T ss_pred             cccc
Confidence            7654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.70  E-value=7.2e-17  Score=129.35  Aligned_cols=140  Identities=24%  Similarity=0.319  Sum_probs=101.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcC--ChHHHHhcCCCccceEEEecC
Q 030042            7 DVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALG--VSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      +|+||||||+|+++|+.|++.  |++|+|+|+++.....|.+..+++.+.+.+...+  ....+......++.+.+..  
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~--   79 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF--   79 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE--
Confidence            799999999999999999998  8999999999877777889999999888887765  2233333333333333332  


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEec
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGC  160 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a  160 (184)
                      .+..  ..     ..+..+..+.|.+|.+.|.+.+.  +++++++++++++...                ..++|+||+|
T Consensus        80 ~g~~--~~-----~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~----------------~~~~D~VVgA  136 (765)
T PRK08255         80 KGRR--IR-----SGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL----------------AADADLVIAS  136 (765)
T ss_pred             CCEE--EE-----ECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh----------------hcCCCEEEEc
Confidence            1111  10     12222345789999999998875  7899999988664321                1468999999


Q ss_pred             CCcchHHHhhh
Q 030042          161 DGIHSTVAWWL  171 (184)
Q Consensus       161 ~G~~s~~~~~~  171 (184)
                      ||.+|.+|+.+
T Consensus       137 DG~~S~vR~~~  147 (765)
T PRK08255        137 DGLNSRIRTRY  147 (765)
T ss_pred             CCCCHHHHHHH
Confidence            99999998865

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.70  E-value=3.9e-16  Score=110.16  Aligned_cols=175  Identities=21%  Similarity=0.236  Sum_probs=111.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHH----------HHcCChHHHH---hcC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLAL----------DALGVSHKLA---SIY   70 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~---~~~   70 (184)
                      +..|++|||+|+.|+++|++|+++|.+++++|+.+.++..|.+++.+...+..+          +....|...+   ...
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~   85 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK   85 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence            468999999999999999999999999999999998877776655433221111          1111222211   111


Q ss_pred             CCccceEEEecCC-----------------------CceeeeecCCCC-----CCC---CCCeeeeHHHHHHHHHhhCC-
Q 030042           71 PPVNRISVTNLGT-----------------------GATQETSLTGKF-----GDG---SGPRFIHRKKLLQTLADELP-  118 (184)
Q Consensus        71 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~-----~~~---~~~~~~~~~~l~~~l~~~~~-  118 (184)
                      .......++....                       .+...-+|+...     ..|   ....+++..+-++.+.+.+. 
T Consensus        86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~  165 (399)
T KOG2820|consen   86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARE  165 (399)
T ss_pred             ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHH
Confidence            1111111111111                       000111222100     111   13457778888888888775 


Q ss_pred             -CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH--HHhhhCCCCCccc
Q 030042          119 -NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST--VAWWLGLSEPLNV  179 (184)
Q Consensus       119 -~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~--~~~~~~~~~~~~~  179 (184)
                       |+.++.+.+|+.++..++++.. +.|+|.+|..+.||.+|+++|+|-.  ++.-+++..|..+
T Consensus       166 ~G~i~~dg~~v~~~~~~~e~~~~-v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~  228 (399)
T KOG2820|consen  166 LGVIFRDGEKVKFIKFVDEEGNH-VSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVAP  228 (399)
T ss_pred             cCeEEecCcceeeEeeccCCCce-eEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccce
Confidence             8899999999998876655666 9999999988999999999999853  3433566666654

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.70  E-value=1.6e-16  Score=123.22  Aligned_cols=174  Identities=15%  Similarity=0.155  Sum_probs=98.2

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC-CCccceeeecc--------c---HHHHHHHcCChHHHHhc
Q 030042            2 AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL-RGTGAAISFAP--------N---AWLALDALGVSHKLASI   69 (184)
Q Consensus         2 ~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~-~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~   69 (184)
                      +..++||+|||||++|+++|+.|+++|.+|+|+|+.... +.++++..+-.        .   ....+++..++..+...
T Consensus         3 ~~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~   82 (546)
T PRK11101          3 DSQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARH   82 (546)
T ss_pred             CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchH
Confidence            334799999999999999999999999999999997543 23333222111        0   11111111111111110


Q ss_pred             -CCCccceEEEecCCC---------------ceee-e-------ecCCC--C----CCCCCCeeeeHHHHHHHHHhhCC-
Q 030042           70 -YPPVNRISVTNLGTG---------------ATQE-T-------SLTGK--F----GDGSGPRFIHRKKLLQTLADELP-  118 (184)
Q Consensus        70 -~~~~~~~~~~~~~~~---------------~~~~-~-------~~~~~--~----~~~~~~~~~~~~~l~~~l~~~~~-  118 (184)
                       ..+...+.+......               .... +       .++..  .    ...++ ..+++..+...+...+. 
T Consensus        83 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~d-g~vdp~rl~~al~~~A~~  161 (546)
T PRK11101         83 CVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPD-GTVDPFRLTAANMLDAKE  161 (546)
T ss_pred             hhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecC-cEECHHHHHHHHHHHHHh
Confidence             000111111110000               0000 0       00000  0    01122 46788888887766653 


Q ss_pred             -CCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEecCCcch-HHHhhhCCCCCccc
Q 030042          119 -NGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGCDGIHS-TVAWWLGLSEPLNV  179 (184)
Q Consensus       119 -~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a~G~~s-~~~~~~~~~~~~~~  179 (184)
                       |++++++++|+++...+  +.. +.|.+.   ++  .++.|+.||+|+|.|+ .+.++.+.+.|..+
T Consensus       162 ~Ga~i~~~t~V~~i~~~~--~~v-~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~~i~p  226 (546)
T PRK11101        162 HGAQILTYHEVTGLIREG--DTV-CGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIRMFP  226 (546)
T ss_pred             CCCEEEeccEEEEEEEcC--CeE-EEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCCceee
Confidence             89999999999998765  232 334432   23  3789999999999998 47777776666554

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.70  E-value=1.7e-17  Score=113.56  Aligned_cols=136  Identities=22%  Similarity=0.240  Sum_probs=73.6

Q ss_pred             EEECCCHHHHHHHHHHHhCCCC-eEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCcee
Q 030042            9 VIIGAGIAGLATALALKRLGVE-PLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGATQ   87 (184)
Q Consensus         9 ~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (184)
                      +||||||+|+++|..|.++|.+ ++|||+.+.+++....          ....   ..+...........+..   .  .
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~----------~~~~---~~~~~~~~~~~~~~~~~---~--~   62 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR----------YYSY---TRLHSPSFFSSDFGLPD---F--E   62 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC----------H-TT---TT-BSSSCCTGGSS--C---C--C
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE----------eCCC---CccccCccccccccCCc---c--c
Confidence            6999999999999999999998 9999999887665211          0000   00000000000000000   0  0


Q ss_pred             eeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           88 ETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                      .+.+.....+..........++.+++.+.++  +.+++++++|+++.+++   +. |.|.+++++++.|+.||+|+|..+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~---~~-w~v~~~~~~~~~a~~VVlAtG~~~  138 (203)
T PF13738_consen   63 SFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG---DG-WTVTTRDGRTIRADRVVLATGHYS  138 (203)
T ss_dssp             HSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEET---TT-EEEEETTS-EEEEEEEEE---SSC
T ss_pred             ccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEec---cE-EEEEEEecceeeeeeEEEeeeccC
Confidence            0000000000001113556666666665553  67899999999999986   55 999999998899999999999755


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       139 ~  139 (203)
T PF13738_consen  139 H  139 (203)
T ss_dssp             S
T ss_pred             C
Confidence            3

...

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.69  E-value=7.9e-16  Score=102.70  Aligned_cols=132  Identities=20%  Similarity=0.298  Sum_probs=90.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc--e-----eeecccHHHHHHHcCChHHHHhcCCCccceE
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA--A-----ISFAPNAWLALDALGVSHKLASIYPPVNRIS   77 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      +.||+|+|+||+||++||+|++.|.+|+|+||+..+++...  +     +.....+.+.|+++++.-+.           
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~-----------   98 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEE-----------   98 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCccee-----------
Confidence            46999999999999999999999999999999988865422  2     22344556666555332110           


Q ss_pred             EEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC-C-CCeeeeCceEEEEeccCCC-CCcceEEE----Eec--
Q 030042           78 VTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL-P-NGTIHFSSKIAAIDSQTHD-GSSPVFIH----LVD--  148 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-~~~i~~~~~v~~~~~~~~~-~~~~~~v~----~~~--  148 (184)
                                         .....+..+...+...|...+ . +.+|+..+.|.++...++. ..+ +.+.    ...  
T Consensus        99 -------------------~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaG-vVvNWt~V~~~~l  158 (262)
T COG1635          99 -------------------EEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAG-VVVNWTPVQMAGL  158 (262)
T ss_pred             -------------------cCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEE-EEEecchhhhccc
Confidence                               011244566677776666655 3 8999999999999877631 112 2221    111  


Q ss_pred             ---CcEEEeeEEEecCCcchHH
Q 030042          149 ---GTIVKTKFLIGCDGIHSTV  167 (184)
Q Consensus       149 ---g~~~~a~~vI~a~G~~s~~  167 (184)
                         --+++|++||.|||+...+
T Consensus       159 hvDPl~i~a~~VvDaTGHda~v  180 (262)
T COG1635         159 HVDPLTIRAKAVVDATGHDAEV  180 (262)
T ss_pred             ccCcceeeEEEEEeCCCCchHH
Confidence               2379999999999987654

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.69  E-value=1.9e-16  Score=120.05  Aligned_cols=160  Identities=24%  Similarity=0.270  Sum_probs=102.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC---CCeEEEeccCCCCCccceeeecccHHHHHHHcCChHH--HHhcC-CCccceEEEe
Q 030042            7 DVVIIGAGIAGLATALALKRLG---VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK--LASIY-PPVNRISVTN   80 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g---~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~   80 (184)
                      ||+|||||++|.++|..|++.+   ++|+|||+... ...+-|.+..|....+++.+|+.+.  +.+.. ....+..+..
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~-~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~   79 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI-PRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN   79 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC-CCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence            7999999999999999999988   89999998643 3456677788888889999998866  54443 3334555543


Q ss_pred             cCCC-ceeeeecCC-------------------------------------------CCCC----CCCCeeeeHHHHHHH
Q 030042           81 LGTG-ATQETSLTG-------------------------------------------KFGD----GSGPRFIHRKKLLQT  112 (184)
Q Consensus        81 ~~~~-~~~~~~~~~-------------------------------------------~~~~----~~~~~~~~~~~l~~~  112 (184)
                      +... .....+|..                                           ....    ....++++|.++.+.
T Consensus        80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~  159 (454)
T PF04820_consen   80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF  159 (454)
T ss_dssp             SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred             cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence            3322 112222211                                           0001    114479999999999


Q ss_pred             HHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHHhh
Q 030042          113 LADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWW  170 (184)
Q Consensus       113 l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~  170 (184)
                      |.+.+.  |++++.+ +|+++..+++ +.. ..|.+.+|++++||+||+|+|..+.+.+.
T Consensus       160 L~~~A~~~Gv~~~~g-~V~~v~~~~~-g~i-~~v~~~~g~~i~ad~~IDASG~~s~L~~~  216 (454)
T PF04820_consen  160 LRRHAEERGVEVIEG-TVVDVELDED-GRI-TAVRLDDGRTIEADFFIDASGRRSLLARK  216 (454)
T ss_dssp             HHHHHHHTT-EEEET--EEEEEE-TT-SEE-EEEEETTSEEEEESEEEE-SGGG-CCCCC
T ss_pred             HHHHHhcCCCEEEeC-EEEEEEEcCC-CCE-EEEEECCCCEEEEeEEEECCCccchhhHh
Confidence            999885  8998877 5778877652 333 67888899999999999999998876543

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.69  E-value=4.7e-16  Score=118.59  Aligned_cols=68  Identities=18%  Similarity=0.238  Sum_probs=54.2

Q ss_pred             eeeeHHHHHHHHHhhCC------C--CeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHhhhC
Q 030042          102 RFIHRKKLLQTLADELP------N--GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLG  172 (184)
Q Consensus       102 ~~~~~~~l~~~l~~~~~------~--~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~  172 (184)
                      ..+++..+.+.|.+.+.      |  ++++++++|++++..+  +.. +.|.+.+| ++.|++||+|+|+|+ .+.+.+|
T Consensus       206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~-~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~G  281 (497)
T PTZ00383        206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSL-YKIHTNRG-EIRARFVVVSACGYSLLFAQKMG  281 (497)
T ss_pred             EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCe-EEEEECCC-EEEeCEEEECcChhHHHHHHHhC
Confidence            46788888877766542      3  6789999999999874  244 88888887 699999999999999 5788887


Q ss_pred             C
Q 030042          173 L  173 (184)
Q Consensus       173 ~  173 (184)
                      +
T Consensus       282 i  282 (497)
T PTZ00383        282 Y  282 (497)
T ss_pred             C
Confidence            6

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.68  E-value=2.1e-15  Score=112.89  Aligned_cols=142  Identities=19%  Similarity=0.251  Sum_probs=90.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCce
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGAT   86 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (184)
                      ||+|||||++|+++|+.|++.|.+|+|+|+.+..+.. ..+.++...   ++++++.+.+.   ..+...........  
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~--   71 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN-HTYGVWDDD---LSDLGLADCVE---HVWPDVYEYRFPKQ--   71 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC-ccccccHhh---hhhhchhhHHh---hcCCCceEEecCCc--
Confidence            8999999999999999999999999999998654321 222222221   22232211111   01111111110000  


Q ss_pred             eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042           87 QETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~  164 (184)
                             ..........+++..+.+.+.+.+.  +++++ +.+|+++...+  ++. +.|.+.+|++++|++||+|+|.+
T Consensus        72 -------~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~--~~~-~~v~~~~g~~~~a~~VI~A~G~~  140 (388)
T TIGR01790        72 -------PRKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG--VAL-STVYCAGGQRIQARLVIDARGFG  140 (388)
T ss_pred             -------chhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC--Cce-eEEEeCCCCEEEeCEEEECCCCc
Confidence                   0011123446889999999988775  66664 66888887763  244 77888888889999999999999


Q ss_pred             hHHH
Q 030042          165 STVA  168 (184)
Q Consensus       165 s~~~  168 (184)
                      |.++
T Consensus       141 s~~~  144 (388)
T TIGR01790       141 PLVQ  144 (388)
T ss_pred             hhcc
Confidence            8553

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.68  E-value=2.1e-15  Score=115.27  Aligned_cols=72  Identities=15%  Similarity=0.150  Sum_probs=54.8

Q ss_pred             CCeeeeHHHHHHHHHhhCC--C-CeeeeCceEEEEeccCCCCCcceEEEEe---cCc--EEEeeEEEecCCcch-HHHhh
Q 030042          100 GPRFIHRKKLLQTLADELP--N-GTIHFSSKIAAIDSQTHDGSSPVFIHLV---DGT--IVKTKFLIGCDGIHS-TVAWW  170 (184)
Q Consensus       100 ~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g~--~~~a~~vI~a~G~~s-~~~~~  170 (184)
                      ....++...+.+.|.+.+.  + ++++++++|++++..++  .. |.+.+.   +|+  ++.|++||+|+|+++ .+++.
T Consensus       176 ~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d--g~-~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~  252 (494)
T PRK05257        176 IGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD--GS-WTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQK  252 (494)
T ss_pred             CceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC--CC-EEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHH
Confidence            3457788888888887764  4 79999999999987652  22 555543   353  689999999999988 57888


Q ss_pred             hCCC
Q 030042          171 LGLS  174 (184)
Q Consensus       171 ~~~~  174 (184)
                      +|++
T Consensus       253 ~Gi~  256 (494)
T PRK05257        253 SGIP  256 (494)
T ss_pred             cCCC
Confidence            8776

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.68  E-value=8.4e-16  Score=102.90  Aligned_cols=132  Identities=26%  Similarity=0.340  Sum_probs=82.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc-------eeeecccHHHHHHHcCChHHHHhcCCCccce
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA-------AISFAPNAWLALDALGVSHKLASIYPPVNRI   76 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
                      .++||+|||+||+||++|+.|++.|++|+|||++..+++.-.       .+........+|+++++.-+           
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~-----------   84 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE-----------   84 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E-----------
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE-----------
Confidence            368999999999999999999999999999999988765321       23344556666666633111           


Q ss_pred             EEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC--CCCeeeeCceEEEEeccCCCCCc-ceEEEE----ecC
Q 030042           77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL--PNGTIHFSSKIAAIDSQTHDGSS-PVFIHL----VDG  149 (184)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~i~~~~~v~~~~~~~~~~~~-~~~v~~----~~g  149 (184)
                         .                .+...+..+..++...|..++  .|++++..+.|+++...++ .+. .+++.-    ..|
T Consensus        85 ---~----------------~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~g  144 (230)
T PF01946_consen   85 ---E----------------YGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAG  144 (230)
T ss_dssp             ---E-----------------SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT-
T ss_pred             ---E----------------eCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhh
Confidence               0                001234556677777666655  3899999999999887762 122 022221    112


Q ss_pred             -----cEEEeeEEEecCCcchH
Q 030042          150 -----TIVKTKFLIGCDGIHST  166 (184)
Q Consensus       150 -----~~~~a~~vI~a~G~~s~  166 (184)
                           -+++|++||.|||+.+.
T Consensus       145 lHvDPl~i~ak~ViDaTGHda~  166 (230)
T PF01946_consen  145 LHVDPLTIRAKVVIDATGHDAE  166 (230)
T ss_dssp             -T-B-EEEEESEEEE---SSSS
T ss_pred             cCCCcceEEEeEEEeCCCCchH
Confidence                 38999999999998763

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.67  E-value=1.2e-15  Score=117.41  Aligned_cols=169  Identities=18%  Similarity=0.209  Sum_probs=92.2

Q ss_pred             CCCc-cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-CccceeeecccHHHHHHHcC-------------ChHH
Q 030042            1 MAMV-EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAAISFAPNAWLALDALG-------------VSHK   65 (184)
Q Consensus         1 m~~~-~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~   65 (184)
                      |+|. ++||+|||||++|+++|+.|+++|.+|+|+|+.+... .++++..+-.....+++...             ++..
T Consensus         1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~   80 (508)
T PRK12266          1 MTMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRM   80 (508)
T ss_pred             CCCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHh
Confidence            6664 6999999999999999999999999999999975433 23333333222222221110             0000


Q ss_pred             HHhcCCCccc-----------------eEEEe---cCCC-ce-eeeec------CCC--CCCC---CCCeeeeHHHHHHH
Q 030042           66 LASIYPPVNR-----------------ISVTN---LGTG-AT-QETSL------TGK--FGDG---SGPRFIHRKKLLQT  112 (184)
Q Consensus        66 ~~~~~~~~~~-----------------~~~~~---~~~~-~~-~~~~~------~~~--~~~~---~~~~~~~~~~l~~~  112 (184)
                      ......+...                 +.+.+   .... .. ....+      ...  ...+   +...++++..+...
T Consensus        81 ~p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~  160 (508)
T PRK12266         81 APHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVL  160 (508)
T ss_pred             CCCcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHH
Confidence            0000000000                 00000   0000 00 00000      000  0000   11124566777666


Q ss_pred             HHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec---C--cEEEeeEEEecCCcchH-HHh-hhCC
Q 030042          113 LADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---G--TIVKTKFLIGCDGIHST-VAW-WLGL  173 (184)
Q Consensus       113 l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g--~~~~a~~vI~a~G~~s~-~~~-~~~~  173 (184)
                      +...+.  |++++.+++|+++...+   .. +.+.+.+   |  .++.|+.||+|+|.|+. +.+ .++.
T Consensus       161 l~~~A~~~Ga~i~~~~~V~~i~~~~---~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~  226 (508)
T PRK12266        161 NARDAAERGAEILTRTRVVSARREN---GL-WHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGL  226 (508)
T ss_pred             HHHHHHHcCCEEEcCcEEEEEEEeC---CE-EEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCC
Confidence            655543  89999999999998764   33 6666553   4  37899999999999983 544 3354

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.66  E-value=1.6e-15  Score=114.16  Aligned_cols=75  Identities=15%  Similarity=0.092  Sum_probs=54.3

Q ss_pred             eeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHhhhCCCCCcc
Q 030042          102 RFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLSEPLN  178 (184)
Q Consensus       102 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~~~~~  178 (184)
                      ..+++..+...|.+.+.  |++++.+++|++++..++ +.. +.|.+.+| ++.++.||+|+|+++ .+++.+++..|.+
T Consensus       178 g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~-~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~~  254 (407)
T TIGR01373       178 GTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRV-IGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPIE  254 (407)
T ss_pred             CcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcE-EEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCcC
Confidence            35566777776666653  899999999999976431 232 56788777 689999988888876 5777777766654


Q ss_pred             c
Q 030042          179 V  179 (184)
Q Consensus       179 ~  179 (184)
                      +
T Consensus       255 ~  255 (407)
T TIGR01373       255 S  255 (407)
T ss_pred             c
Confidence            3

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.64  E-value=2.2e-15  Score=114.36  Aligned_cols=152  Identities=17%  Similarity=0.262  Sum_probs=86.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHh-cCCCccceEEEecCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLAS-IYPPVNRISVTNLGT   83 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   83 (184)
                      ..+|+|||||++||++|.+|.++|++|+|+|+.+..++..   .+.+....  ...++.+.... ....+..+....+..
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W---~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~tn~p~~   84 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLW---VYTPKSES--DPLSLDPTRSIVHSSVYESLRTNLPRE   84 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCccee---ecCCCcCC--CccccCCCCcccchhhhhhhhccCCHh
Confidence            5799999999999999999999999999999998876543   22211100  00000000000 000000000000000


Q ss_pred             Cc-eeeeecCCCC--CCCCCCeeeeHHHHHHHHHhhCC--CCe--eeeCceEEEEeccCCCCCcceEEEEecC--c--EE
Q 030042           84 GA-TQETSLTGKF--GDGSGPRFIHRKKLLQTLADELP--NGT--IHFSSKIAAIDSQTHDGSSPVFIHLVDG--T--IV  152 (184)
Q Consensus        84 ~~-~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~--i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~--~~  152 (184)
                      .. ...+++....  .......+....++.++|.+.+.  ++.  |+++++|+++.+.+   .. |.|.+.++  .  +.
T Consensus        85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~---~~-w~V~~~~~~~~~~~~  160 (461)
T PLN02172         85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD---GK-WRVQSKNSGGFSKDE  160 (461)
T ss_pred             hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC---Ce-EEEEEEcCCCceEEE
Confidence            00 0111111100  00001123456778888888774  554  89999999998865   44 88887643  2  45


Q ss_pred             EeeEEEecCCcch
Q 030042          153 KTKFLIGCDGIHS  165 (184)
Q Consensus       153 ~a~~vI~a~G~~s  165 (184)
                      .+|.||+|+|..+
T Consensus       161 ~~d~VIvAtG~~~  173 (461)
T PLN02172        161 IFDAVVVCNGHYT  173 (461)
T ss_pred             EcCEEEEeccCCC
Confidence            7999999999764

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.64  E-value=7.4e-15  Score=110.71  Aligned_cols=71  Identities=15%  Similarity=0.222  Sum_probs=50.9

Q ss_pred             eeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC-----cEEEeeEEEecCCcch-HHHhhhCCC
Q 030042          103 FIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-----TIVKTKFLIGCDGIHS-TVAWWLGLS  174 (184)
Q Consensus       103 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-----~~~~a~~vI~a~G~~s-~~~~~~~~~  174 (184)
                      .++...+...|.+.+.  |++++.+++|+++...+   .. +.+.+.++     .+++|+.||+|+|.++ .+.+.++..
T Consensus       193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~---~~-~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~  268 (410)
T PRK12409        193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG---GG-VVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR  268 (410)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---CE-EEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCC
Confidence            4566677777777664  89999999999998754   33 55554332     3789999999999997 466666654


Q ss_pred             CCc
Q 030042          175 EPL  177 (184)
Q Consensus       175 ~~~  177 (184)
                      .|.
T Consensus       269 ~~i  271 (410)
T PRK12409        269 VNV  271 (410)
T ss_pred             Ccc
Confidence            443

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.64  E-value=8.5e-15  Score=110.73  Aligned_cols=136  Identities=23%  Similarity=0.233  Sum_probs=85.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVE-PLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      +.++||+|||||++|+++|+.|.++|.+ ++|+||+...++..+-.                        ....+.+..+
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~------------------------ry~~l~~~~p   61 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN------------------------RYPGLRLDSP   61 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc------------------------cCCceEECCc
Confidence            4578999999999999999999999998 99999998877663210                        0111111100


Q ss_pred             CCCceeeeecCCCC-CCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcE--EEeeEEE
Q 030042           82 GTGATQETSLTGKF-GDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI--VKTKFLI  158 (184)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~--~~a~~vI  158 (184)
                      ..  ...+++.... ...+......+..+..++.+.....++.+++.|..+..+++ ... |.|.++++.+  ++||+||
T Consensus        62 ~~--~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~-w~V~~~~~~~~~~~a~~vV  137 (443)
T COG2072          62 KW--LLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKR-WTVTTSDGGTGELTADFVV  137 (443)
T ss_pred             hh--eeccCCCccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCC-CCe-EEEEEcCCCeeeEecCEEE
Confidence            00  0111111110 00011111124455555555544567888888888877764 234 9999988865  5599999


Q ss_pred             ecCCcchH
Q 030042          159 GCDGIHST  166 (184)
Q Consensus       159 ~a~G~~s~  166 (184)
                      +|||..+.
T Consensus       138 ~ATG~~~~  145 (443)
T COG2072         138 VATGHLSE  145 (443)
T ss_pred             EeecCCCC
Confidence            99998663

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.63  E-value=4.5e-15  Score=117.80  Aligned_cols=157  Identities=20%  Similarity=0.187  Sum_probs=94.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC--CCccceeee-----cc--c-HHHHH-----HHcCChHHHHhcC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL--RGTGAAISF-----AP--N-AWLAL-----DALGVSHKLASIY   70 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~--~~~~~~~~~-----~~--~-~~~~~-----~~~~~~~~~~~~~   70 (184)
                      +||+|||||++|+++|++|+++|.+|+|+|++..+  +.++++.++     ..  . ..++.     ....++..+.+..
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~~~  340 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALPAAG  340 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999997533  333332211     00  0 01110     1122233332111


Q ss_pred             C----CccceEEEecCCCce-------------------------eeeecCCC--CCCCCCCeeeeHHHHHHHHHhhCC-
Q 030042           71 P----PVNRISVTNLGTGAT-------------------------QETSLTGK--FGDGSGPRFIHRKKLLQTLADELP-  118 (184)
Q Consensus        71 ~----~~~~~~~~~~~~~~~-------------------------~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~-  118 (184)
                      .    ...+...........                         ........  ....+...++++..+...|.+.+. 
T Consensus       341 ~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~~  420 (662)
T PRK01747        341 VAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAGQ  420 (662)
T ss_pred             CCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhccc
Confidence            1    111111111111000                         00000000  011123356788899999998876 


Q ss_pred             CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      +++++++++|+++...+   +. +.|.+.+|..+.|+.||+|+|.++.
T Consensus       421 Gv~i~~~~~V~~i~~~~---~~-~~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        421 QLTIHFGHEVARLERED---DG-WQLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             CcEEEeCCEeeEEEEeC---CE-EEEEECCCcEEECCEEEECCCCCcc
Confidence            68999999999998765   44 7788888877889999999999874

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.63  E-value=5.1e-15  Score=114.09  Aligned_cols=147  Identities=22%  Similarity=0.258  Sum_probs=86.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC-CCCCccceeeecc----cHHHHHHHcC-ChHHHHhcCCCccce
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD-GLRGTGAAISFAP----NAWLALDALG-VSHKLASIYPPVNRI   76 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~-~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~   76 (184)
                      +.+|||+|||||++|+.+|+.+++.|.+|+++|+.. ..+..++.-.+.-    ...+.+..+| +.....+... . ..
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~g-i-q~   79 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTG-I-QF   79 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhcc-C-ce
Confidence            457999999999999999999999999999999874 3332222111110    1111122222 1111111110 0 01


Q ss_pred             EEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEE
Q 030042           77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVK  153 (184)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~  153 (184)
                      .......         +...+++ ...+++..+.+.+.+.+.   ++++ ++++|+++...+  +.. ..|.+.+|..+.
T Consensus        80 r~ln~sk---------GpAV~s~-RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~--grV-~GV~t~dG~~I~  145 (618)
T PRK05192         80 RMLNTSK---------GPAVRAL-RAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVEN--GRV-VGVVTQDGLEFR  145 (618)
T ss_pred             eecccCC---------CCceeCc-HHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecC--CEE-EEEEECCCCEEE
Confidence            1111100         0011111 125677777777766553   6776 467888887654  233 668888899999


Q ss_pred             eeEEEecCCcch
Q 030042          154 TKFLIGCDGIHS  165 (184)
Q Consensus       154 a~~vI~a~G~~s  165 (184)
                      |+.||+|||.++
T Consensus       146 Ak~VIlATGTFL  157 (618)
T PRK05192        146 AKAVVLTTGTFL  157 (618)
T ss_pred             CCEEEEeeCcch
Confidence            999999999765

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.63  E-value=9.4e-15  Score=112.56  Aligned_cols=167  Identities=16%  Similarity=0.114  Sum_probs=93.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-CccceeeecccHHHHHHHcCC--h-------HHHHhcC---
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAAISFAPNAWLALDALGV--S-------HKLASIY---   70 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~---   70 (184)
                      .++||+|||||++|+++|+.|+++|.+|+|+|+.+... .++++..+-.....+++....  .       ..+....   
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~l   84 (502)
T PRK13369          5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPHI   84 (502)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCcc
Confidence            46999999999999999999999999999999986433 233333322222222221110  0       0000000   


Q ss_pred             CCccceEEEecC---------------------CCc-e-eeeecC------CC--CCCC---CCCeeeeHHHHHHHHHhh
Q 030042           71 PPVNRISVTNLG---------------------TGA-T-QETSLT------GK--FGDG---SGPRFIHRKKLLQTLADE  116 (184)
Q Consensus        71 ~~~~~~~~~~~~---------------------~~~-~-~~~~~~------~~--~~~~---~~~~~~~~~~l~~~l~~~  116 (184)
                      .....+.+....                     ... . ..+...      ..  ...+   +...++++..+...+...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~~~  164 (502)
T PRK13369         85 IWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNALD  164 (502)
T ss_pred             ccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHHHH
Confidence            000000000000                     000 0 000000      00  0000   112356777787777666


Q ss_pred             CC--CCeeeeCceEEEEeccCCCCCcceEEEEecC----cEEEeeEEEecCCcchH-HHh-hhCCC
Q 030042          117 LP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG----TIVKTKFLIGCDGIHST-VAW-WLGLS  174 (184)
Q Consensus       117 ~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g----~~~~a~~vI~a~G~~s~-~~~-~~~~~  174 (184)
                      +.  |++++.+++|+++...+   .. +.|.+.++    .++.|+.||+|+|.|+. +.+ ..+.+
T Consensus       165 a~~~Ga~i~~~~~V~~i~~~~---~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~  226 (502)
T PRK13369        165 AAERGATILTRTRCVSARREG---GL-WRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSN  226 (502)
T ss_pred             HHHCCCEEecCcEEEEEEEcC---CE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCC
Confidence            53  89999999999998764   44 66666554    36899999999999984 655 44543

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.62  E-value=7.2e-15  Score=111.90  Aligned_cols=72  Identities=11%  Similarity=0.144  Sum_probs=55.1

Q ss_pred             CCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEE---EecCc--EEEeeEEEecCCcch-HHHhh
Q 030042          100 GPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIH---LVDGT--IVKTKFLIGCDGIHS-TVAWW  170 (184)
Q Consensus       100 ~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~---~~~g~--~~~a~~vI~a~G~~s-~~~~~  170 (184)
                      ....++...+.+.|.+.+.   +++++++++|+++...++  .. |++.   +.+++  +++||+||+|+|+++ .+.+.
T Consensus       177 ~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d--~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~  253 (497)
T PRK13339        177 EGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSD--GG-WEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQK  253 (497)
T ss_pred             CceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC--CC-EEEEEEecCCCceEEEEcCEEEECCCcchHHHHHH
Confidence            4457788888888877662   799999999999987631  33 6665   34452  689999999999998 58888


Q ss_pred             hCCC
Q 030042          171 LGLS  174 (184)
Q Consensus       171 ~~~~  174 (184)
                      +|++
T Consensus       254 ~Gi~  257 (497)
T PRK13339        254 SGIP  257 (497)
T ss_pred             cCCC
Confidence            8875

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.62  E-value=1.1e-14  Score=111.18  Aligned_cols=72  Identities=18%  Similarity=0.211  Sum_probs=56.4

Q ss_pred             CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE---ecC--cEEEeeEEEecCCcch-HHHhhh
Q 030042          100 GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL---VDG--TIVKTKFLIGCDGIHS-TVAWWL  171 (184)
Q Consensus       100 ~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~---~~g--~~~~a~~vI~a~G~~s-~~~~~~  171 (184)
                      ....+++..+.+.|.+.+.  |++++++++|++++..++  .. |.+.+   .+|  .+++|++||+|+|+++ .+++.+
T Consensus       171 ~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~--~~-v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~  247 (483)
T TIGR01320       171 EGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD--GS-WTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKS  247 (483)
T ss_pred             CCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--Ce-EEEEEeeccCCceEEEECCEEEECCCcchHHHHHHc
Confidence            4567899999999988875  899999999999987641  23 55543   334  3689999999999988 588888


Q ss_pred             CCC
Q 030042          172 GLS  174 (184)
Q Consensus       172 ~~~  174 (184)
                      |++
T Consensus       248 Gi~  250 (483)
T TIGR01320       248 GIP  250 (483)
T ss_pred             CCC
Confidence            876

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.62  E-value=4.4e-14  Score=102.35  Aligned_cols=172  Identities=24%  Similarity=0.248  Sum_probs=120.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC----CCCeEEEeccCCC--C-------CccceeeecccHHHHHHHcCChHHHHh-c
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL----GVEPLVLEKSDGL--R-------GTGAAISFAPNAWLALDALGVSHKLAS-I   69 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~----g~~v~vie~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   69 (184)
                      +.|||+|+||||.|+++|..|...    -++|+++|-...+  +       -..+-..+++.+...++..+.|+.+.. +
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R  114 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR  114 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhc
Confidence            479999999999999999999753    4589999987432  1       122456678899999999999988764 5


Q ss_pred             CCCccceEEEecCCCceeeeecCCCCCCC-CCCeeeeHHHHHHHHH-----hhCCCCeeeeCceEEEEecc-----CCCC
Q 030042           70 YPPVNRISVTNLGTGATQETSLTGKFGDG-SGPRFIHRKKLLQTLA-----DELPNGTIHFSSKIAAIDSQ-----THDG  138 (184)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~-----~~~~~~~i~~~~~v~~~~~~-----~~~~  138 (184)
                      +.+.+++..++.-..  ..+.|.... .+ .-.+.+....+...|.     ...+++++...+++.++...     ++.+
T Consensus       115 ~~~~~~~~v~Ds~s~--a~I~~~~d~-~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~  191 (481)
T KOG3855|consen  115 YQKFSRMLVWDSCSA--ALILFDHDN-VGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNG  191 (481)
T ss_pred             cccccceeeecccch--hhhhhcccc-ccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCc
Confidence            666777777664332  233333221 11 1122333333333333     33348999999999888763     2224


Q ss_pred             CcceEEEEecCcEEEeeEEEecCCcchHHHhhhCCCCCccc
Q 030042          139 SSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLNV  179 (184)
Q Consensus       139 ~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~~~~~~~~~  179 (184)
                      .+ ..+.+.+|..+..|++|+|+|.+|.+|+..+++.+.+.
T Consensus       192 ~~-~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~n  231 (481)
T KOG3855|consen  192 MW-FHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWN  231 (481)
T ss_pred             ce-EEEEeccCceeeeceeeccccccchhhhhcCCCccccc
Confidence            55 78888999999999999999999999999999887654

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.61  E-value=7e-15  Score=110.23  Aligned_cols=136  Identities=24%  Similarity=0.306  Sum_probs=88.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHH----HHHHHcCChHHHHhcCCCccceEEE
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAW----LALDALGVSHKLASIYPPVNRISVT   79 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~   79 (184)
                      ...+++|||+|++||++|..|.++|.+++++||.+..++...   +.+...    .+++++                ...
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~---y~~~~~~~~ss~Y~~l----------------~tn   65 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWK---YTENVEVVHSSVYKSL----------------RTN   65 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEe---ecCcccccccchhhhh----------------hcc
Confidence            357999999999999999999999999999999998876532   211111    111111                111


Q ss_pred             ecCCC-ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC----CCeeeeCceEEEEeccCCCCCcceEEEEecC----c
Q 030042           80 NLGTG-ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP----NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG----T  150 (184)
Q Consensus        80 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g----~  150 (184)
                      .+..- ....++|...    ....+.+..++.++|.+.++    ..+|.++++|..+....+  .. |.|.+.+.    +
T Consensus        66 ~pKe~~~~~dfpf~~~----~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~--gk-W~V~~~~~~~~~~  138 (448)
T KOG1399|consen   66 LPKEMMGYSDFPFPER----DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK--GK-WRVTTKDNGTQIE  138 (448)
T ss_pred             CChhhhcCCCCCCccc----CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC--Cc-eeEEEecCCccee
Confidence            10000 0022222222    12234556688888887775    357999999999988752  13 88887654    3


Q ss_pred             EEEeeEEEecCCcch
Q 030042          151 IVKTKFLIGCDGIHS  165 (184)
Q Consensus       151 ~~~a~~vI~a~G~~s  165 (184)
                      ...+|+|++|+|.+.
T Consensus       139 ~~ifd~VvVctGh~~  153 (448)
T KOG1399|consen  139 EEIFDAVVVCTGHYV  153 (448)
T ss_pred             EEEeeEEEEcccCcC
Confidence            677999999999883

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.61  E-value=8.8e-15  Score=111.70  Aligned_cols=67  Identities=10%  Similarity=0.038  Sum_probs=52.1

Q ss_pred             CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhC
Q 030042          100 GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLG  172 (184)
Q Consensus       100 ~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~  172 (184)
                      ....+++.++...|.+.+.  |++|+.+++|++++..    +. +.|.+.+| ++.|+.||+|+|+++. +...++
T Consensus       176 ~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~----~~-~~v~t~~g-~v~A~~VV~Atga~s~~l~~~~~  245 (460)
T TIGR03329       176 VAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG----QP-AVVRTPDG-QVTADKVVLALNAWMASHFPQFE  245 (460)
T ss_pred             CCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC----Cc-eEEEeCCc-EEECCEEEEcccccccccChhhc
Confidence            3357788999998887764  8999999999999753    33 67888777 6899999999999863 433344

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.59  E-value=6.9e-15  Score=113.16  Aligned_cols=142  Identities=20%  Similarity=0.240  Sum_probs=83.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+|+|||||++||++|..|.+.|++++++|+.+..|+..+-..-...        +.       ...+..+....+    
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~--------g~-------~~~y~sl~~n~s----   62 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPED--------GR-------SSVYDSLHTNTS----   62 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCC--------SE-------GGGSTT-B-SS-----
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCC--------Cc-------cccccceEEeeC----
Confidence            47999999999999999999999999999999998877321000000        00       000001110000    


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--C--CeeeeCceEEEEeccCCCC-CcceEEEEec-C--cEEEeeEE
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--N--GTIHFSSKIAAIDSQTHDG-SSPVFIHLVD-G--TIVKTKFL  157 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~--~~i~~~~~v~~~~~~~~~~-~~~~~v~~~~-g--~~~~a~~v  157 (184)
                      .....|.+.........+.+..++.++|.+.++  +  -.|+|||+|+++.+.++.. .+.|.|.+++ |  ++-.+|.|
T Consensus        63 k~~~~fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~V  142 (531)
T PF00743_consen   63 KEMMAFSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAV  142 (531)
T ss_dssp             GGGSCCTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEE
T ss_pred             chHhcCCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeE
Confidence            011112221111112235678888888888775  3  4789999999999865311 1238888754 3  24568999


Q ss_pred             EecCCcchH
Q 030042          158 IGCDGIHST  166 (184)
Q Consensus       158 I~a~G~~s~  166 (184)
                      |+|+|.++.
T Consensus       143 vvatG~~~~  151 (531)
T PF00743_consen  143 VVATGHFSK  151 (531)
T ss_dssp             EEEE-SSSC
T ss_pred             EEcCCCcCC
Confidence            999999874

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.58  E-value=5.6e-16  Score=117.02  Aligned_cols=150  Identities=19%  Similarity=0.238  Sum_probs=38.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceee---ecc-cHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS---FAP-NAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      ||+|||||++|+++|+.+++.|.+|+|+|+...+++...+..   +.. .... ...-++..++............    
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~----   75 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQ----   75 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhccccc----
Confidence            899999999999999999999999999999998876543221   111 1111 1112234444333222111100    


Q ss_pred             CCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeEEE
Q 030042           83 TGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKFLI  158 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~vI  158 (184)
                      .   ..        .++ ....+++..+...|.+.+.  |+++++++.|+++..+++...+ +.+.+.+| .++.||.+|
T Consensus        76 ~---~~--------~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~-V~~~~~~g~~~i~A~~~I  143 (428)
T PF12831_consen   76 E---DR--------YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITG-VIVETKSGRKEIRAKVFI  143 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c---cc--------ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            0   00        000 0012333344333333332  8999999999999987632222 44444444 589999999


Q ss_pred             ecCCcchHHHhhhCCC
Q 030042          159 GCDGIHSTVAWWLGLS  174 (184)
Q Consensus       159 ~a~G~~s~~~~~~~~~  174 (184)
                      +|||- ..+....|.+
T Consensus       144 DaTG~-g~l~~~aG~~  158 (428)
T PF12831_consen  144 DATGD-GDLAALAGAP  158 (428)
T ss_dssp             ----------------
T ss_pred             ccccc-cccccccccc
Confidence            99994 4555555544

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.57  E-value=7e-14  Score=105.96  Aligned_cols=169  Identities=17%  Similarity=0.196  Sum_probs=100.6

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC-CCccceeeecccHHHHHHHcCCh------------HHHHh
Q 030042            2 AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL-RGTGAAISFAPNAWLALDALGVS------------HKLAS   68 (184)
Q Consensus         2 ~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~   68 (184)
                      .+.++|++|||||++|+-+|..++.+|++|+++|+++.- +.++++..+-.....+++...+.            .....
T Consensus         9 ~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~AP   88 (532)
T COG0578           9 RMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAP   88 (532)
T ss_pred             cccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCc
Confidence            346899999999999999999999999999999998764 45566666555555554443211            11111


Q ss_pred             cCCCccceEEEecC----------------------------------CCceeeeecCCCCCC-C--CCCeeeeHHHHHH
Q 030042           69 IYPPVNRISVTNLG----------------------------------TGATQETSLTGKFGD-G--SGPRFIHRKKLLQ  111 (184)
Q Consensus        69 ~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~  111 (184)
                      .......+.+....                                  ........+...... +  +.-.+++...|..
T Consensus        89 H~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~  168 (532)
T COG0578          89 HLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVA  168 (532)
T ss_pred             cccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHH
Confidence            11100000000000                                  000000000000001 1  1223555555554


Q ss_pred             HHHhhC-C-CCeeeeCceEEEEeccCCCCCcceEEEEec---Cc--EEEeeEEEecCCcch-HHHhhhCCC
Q 030042          112 TLADEL-P-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---GT--IVKTKFLIGCDGIHS-TVAWWLGLS  174 (184)
Q Consensus       112 ~l~~~~-~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g~--~~~a~~vI~a~G~~s-~~~~~~~~~  174 (184)
                      .+...+ . |.+++..++|+++...+   .. +.|...|   |+  .++|+.||+|+|.|+ .+++..+..
T Consensus       169 ~~a~~A~~~Ga~il~~~~v~~~~re~---~v-~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~  235 (532)
T COG0578         169 ANARDAAEHGAEILTYTRVESLRREG---GV-WGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLE  235 (532)
T ss_pred             HHHHHHHhcccchhhcceeeeeeecC---CE-EEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhccc
Confidence            444433 2 88999999999999887   33 6676654   32  688999999999999 577777544

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.57  E-value=9.9e-14  Score=102.98  Aligned_cols=135  Identities=21%  Similarity=0.293  Sum_probs=83.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHh-cCCCccceEEEecCC
Q 030042            7 DVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLAS-IYPPVNRISVTNLGT   83 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   83 (184)
                      ||+|||||++|+++|+.|++.  |++|+|+|+.+..++. +.+.++.....-   . ....+.. ....+....+.... 
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-~tw~~~~~~~~~---~-~~~~~~~~v~~~W~~~~v~~~~-   74 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-HTWSFFDSDLSD---A-QHAWLADLVQTDWPGYEVRFPK-   74 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-ccceecccccch---h-hhhhhhhhheEeCCCCEEECcc-
Confidence            899999999999999999987  9999999997654322 122221111000   0 0000000 11112222222110 


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                               .....+..+..+++.++.+.+.+.+.. .++++++|+++..     ++ +.+  .+|+++.|++||+|+|.
T Consensus        75 ---------~~~~l~~~Y~~I~r~~f~~~l~~~l~~-~i~~~~~V~~v~~-----~~-v~l--~dg~~~~A~~VI~A~G~  136 (370)
T TIGR01789        75 ---------YRRKLKTAYRSMTSTRFHEGLLQAFPE-GVILGRKAVGLDA-----DG-VDL--APGTRINARSVIDCRGF  136 (370)
T ss_pred             ---------hhhhcCCCceEEEHHHHHHHHHHhhcc-cEEecCEEEEEeC-----CE-EEE--CCCCEEEeeEEEECCCC
Confidence                     011122355689999999999887752 3777999998832     22 444  67889999999999998


Q ss_pred             ch
Q 030042          164 HS  165 (184)
Q Consensus       164 ~s  165 (184)
                      +|
T Consensus       137 ~s  138 (370)
T TIGR01789       137 KP  138 (370)
T ss_pred             CC
Confidence            76

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.55  E-value=4.9e-14  Score=106.46  Aligned_cols=73  Identities=15%  Similarity=0.102  Sum_probs=53.4

Q ss_pred             eeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhCCCCCccc
Q 030042          103 FIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLGLSEPLNV  179 (184)
Q Consensus       103 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~~~~~~~~  179 (184)
                      .+++..+...|.+.+.  |++++.+++|++++..+   +..+.|.+.++ ++.||.||+|+|.++. +.+.++.+.|.++
T Consensus       197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~~pi~p  272 (416)
T PRK00711        197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG---GRITGVQTGGG-VITADAYVVALGSYSTALLKPLGVDIPVYP  272 (416)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---CEEEEEEeCCc-EEeCCEEEECCCcchHHHHHHhCCCcccCC
Confidence            5567788888877664  89999999999998765   32145666655 7899999999999884 5555665555443

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.6e-13  Score=98.68  Aligned_cols=113  Identities=24%  Similarity=0.328  Sum_probs=76.3

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVE-PLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      |+.+||+||||||+||++|.++++.+++ ++|+|+. .+++..                             ....    
T Consensus         1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~-----------------------------~~~~----   46 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQL-----------------------------TKTT----   46 (305)
T ss_pred             CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCcc-----------------------------ccce----
Confidence            3579999999999999999999999998 6666654 322110                             0000    


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG  159 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~  159 (184)
                           ..-.++     |. .......+|.+.+.+++.  ++++.. ..|.+++..+   +. +.|.+.++. ++||.||+
T Consensus        47 -----~venyp-----g~-~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~---~~-F~v~t~~~~-~~ak~vIi  109 (305)
T COG0492          47 -----DVENYP-----GF-PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG---GP-FKVKTDKGT-YEAKAVII  109 (305)
T ss_pred             -----eecCCC-----CC-ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC---ce-EEEEECCCe-EEEeEEEE
Confidence                 000011     11 112344677777777774  666666 6777777664   33 999999997 99999999


Q ss_pred             cCCcchH
Q 030042          160 CDGIHST  166 (184)
Q Consensus       160 a~G~~s~  166 (184)
                      |+|....
T Consensus       110 AtG~~~~  116 (305)
T COG0492         110 ATGAGAR  116 (305)
T ss_pred             CcCCccc
Confidence            9998754

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.54  E-value=1.2e-13  Score=108.65  Aligned_cols=70  Identities=14%  Similarity=0.144  Sum_probs=51.3

Q ss_pred             eeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE---ecCc--EEEeeEEEecCCcch-HHHhhhC
Q 030042          102 RFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL---VDGT--IVKTKFLIGCDGIHS-TVAWWLG  172 (184)
Q Consensus       102 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~---~~g~--~~~a~~vI~a~G~~s-~~~~~~~  172 (184)
                      .++++..+...|.+.+.  |++++.+++|+++..+++++.. +.|..   .+++  ++.+|.||+|+|+|+ .++++++
T Consensus       227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v-~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g  304 (627)
T PLN02464        227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRI-VGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD  304 (627)
T ss_pred             cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcE-EEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence            45688889888888775  8999999999999875310232 44443   2333  689999999999998 4777775

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.54  E-value=8e-14  Score=103.60  Aligned_cols=152  Identities=19%  Similarity=0.208  Sum_probs=85.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC-CCccceeee--c-----ccHHHH-HHHcCChHHHHhcC-CCcc-
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL-RGTGAAISF--A-----PNAWLA-LDALGVSHKLASIY-PPVN-   74 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~-~~~~~~~~~--~-----~~~~~~-~~~~~~~~~~~~~~-~~~~-   74 (184)
                      +||+|||||++|+++|++|+++|.+|+|+|+.... +.++++.++  .     .....+ .+....+.++.+.. ..+. 
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~   80 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGIWVRE   80 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHcCCCEEe
Confidence            59999999999999999999999999999997642 222222111  0     101111 11112233322111 1110 


Q ss_pred             -ceEEEecCC----------------C-ceeee-------ecCCC---C----CCCCCCeeeeHHHHHHHHHhhC--C-C
Q 030042           75 -RISVTNLGT----------------G-ATQET-------SLTGK---F----GDGSGPRFIHRKKLLQTLADEL--P-N  119 (184)
Q Consensus        75 -~~~~~~~~~----------------~-~~~~~-------~~~~~---~----~~~~~~~~~~~~~l~~~l~~~~--~-~  119 (184)
                       +........                . ....+       .++..   .    ...+...++++..+...|.+.+  . |
T Consensus        81 ~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~~~~G  160 (365)
T TIGR03364        81 NGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQHG  160 (365)
T ss_pred             CCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHHHHhcCC
Confidence             010110000                0 00000       00100   0    0112335678888888887764  2 8


Q ss_pred             CeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          120 GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       120 ~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      ++++.+++|++++..        .|.+.+| .+.|+.||+|+|+++.
T Consensus       161 v~i~~~t~V~~i~~~--------~v~t~~g-~i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       161 VEFHWNTAVTSVETG--------TVRTSRG-DVHADQVFVCPGADFE  198 (365)
T ss_pred             CEEEeCCeEEEEecC--------eEEeCCC-cEEeCEEEECCCCChh
Confidence            999999999998632        3666776 4789999999999874

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.54  E-value=2.2e-13  Score=98.58  Aligned_cols=110  Identities=23%  Similarity=0.352  Sum_probs=74.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      |||+|||||++|+++|..|++.|.+|+|||+.+ +++.   +...             ..                    
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~---~~~~-------------~~--------------------   43 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQ---LTTT-------------TE--------------------   43 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcc---eeec-------------cc--------------------
Confidence            699999999999999999999999999999875 2211   0000             00                    


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                        ...++..     . ..+...++...+.+.+.  ++++++ ++|+++...+   .. +.+.+.+++++.+|.||+|+|.
T Consensus        44 --~~~~~~~-----~-~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~---~~-~~v~~~~~~~~~~d~liiAtG~  110 (300)
T TIGR01292        44 --VENYPGF-----P-EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSD---RP-FKVKTGDGKEYTAKAVIIATGA  110 (300)
T ss_pred             --ccccCCC-----C-CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecC---Ce-eEEEeCCCCEEEeCEEEECCCC
Confidence              0000000     0 01122345555554442  788888 8999998765   44 7788888889999999999998


Q ss_pred             ch
Q 030042          164 HS  165 (184)
Q Consensus       164 ~s  165 (184)
                      ..
T Consensus       111 ~~  112 (300)
T TIGR01292       111 SA  112 (300)
T ss_pred             Cc
Confidence            64

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.53  E-value=3.4e-13  Score=104.03  Aligned_cols=39  Identities=41%  Similarity=0.652  Sum_probs=35.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .++||+|||+|.+|+++|+.+++.|.+|+||||.+..++
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG   98 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG   98 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            368999999999999999999999999999999887654

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.52  E-value=1.2e-13  Score=103.33  Aligned_cols=68  Identities=16%  Similarity=0.179  Sum_probs=51.9

Q ss_pred             CCeeeeHHHHHHHHHhhCC--C-CeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhC
Q 030042          100 GPRFIHRKKLLQTLADELP--N-GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLG  172 (184)
Q Consensus       100 ~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~  172 (184)
                      ....+++..+.+.+.+.+.  | ..+..++.+..+....   .. +.|.+.+|. +.|+.||+|+|+++. +....+
T Consensus       149 ~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~-~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~  220 (387)
T COG0665         149 TGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG---RV-VGVETDGGT-IEADKVVLAAGAWAGELAATLG  220 (387)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC---cE-EEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence            4457778888888888775  5 4566688888888751   23 889999986 999999999999975 555555

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.50  E-value=1e-13  Score=101.84  Aligned_cols=140  Identities=24%  Similarity=0.311  Sum_probs=82.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEE-eccCCCCCccceeeecccHHHH----HHHcC-ChHHHHhcCCCccceEEEe
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVL-EKSDGLRGTGAAISFAPNAWLA----LDALG-VSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vi-e~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~   80 (184)
                      ||+|||||.+|+.+|+.+++.|.+|+++ ++.+..+..++.-++.....-.    ++.+| ..-...+    ...+.+..
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD----~~~i~~~~   76 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAAD----ETGIHFRM   76 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHH----HHEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHh----Hhhhhhhc
Confidence            8999999999999999999999999999 4444444444444433322211    22222 1111111    11121111


Q ss_pred             cCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042           81 LGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKF  156 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~  156 (184)
                      .+..         ..+.+. ....+++..+.+++.+.+   ++++++ +.+|+++...+  +.. +.|.+.+|+.+.+|.
T Consensus        77 lN~s---------kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~--~~v-~GV~~~~g~~~~a~~  143 (392)
T PF01134_consen   77 LNRS---------KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN--GKV-KGVVTKDGEEIEADA  143 (392)
T ss_dssp             ESTT---------S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT--TEE-EEEEETTSEEEEECE
T ss_pred             cccc---------CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC--CeE-EEEEeCCCCEEecCE
Confidence            1110         000111 223788888887776665   367775 67999998876  344 889999999999999


Q ss_pred             EEecCCc
Q 030042          157 LIGCDGI  163 (184)
Q Consensus       157 vI~a~G~  163 (184)
                      ||+|||.
T Consensus       144 vVlaTGt  150 (392)
T PF01134_consen  144 VVLATGT  150 (392)
T ss_dssp             EEE-TTT
T ss_pred             EEEeccc
Confidence            9999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.50  E-value=4.5e-13  Score=99.14  Aligned_cols=70  Identities=19%  Similarity=0.238  Sum_probs=52.5

Q ss_pred             eeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEec---C--cEEEeeEEEecCCcch-HHHhhhCC
Q 030042          103 FIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---G--TIVKTKFLIGCDGIHS-TVAWWLGL  173 (184)
Q Consensus       103 ~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g--~~~~a~~vI~a~G~~s-~~~~~~~~  173 (184)
                      -++-..|.+.|.+.+.   +++++++++|+++++.+   ++.|.|.+.|   |  .++.|++|+++.|+.+ .+.+.+|+
T Consensus       177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~---dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi  253 (488)
T PF06039_consen  177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG---DGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGI  253 (488)
T ss_pred             cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC---CCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCC
Confidence            3445566666666553   78999999999999987   3338777643   2  5899999999999988 57788887


Q ss_pred             CC
Q 030042          174 SE  175 (184)
Q Consensus       174 ~~  175 (184)
                      ++
T Consensus       254 ~e  255 (488)
T PF06039_consen  254 PE  255 (488)
T ss_pred             hh
Confidence            53

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.49  E-value=4.1e-13  Score=102.82  Aligned_cols=36  Identities=39%  Similarity=0.540  Sum_probs=33.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .++||+|||+|++|+++|+.+++.|.+|+|+||.+.
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~   38 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR   38 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            478999999999999999999999999999999864

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.48  E-value=8.3e-13  Score=102.21  Aligned_cols=110  Identities=20%  Similarity=0.298  Sum_probs=77.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      .+|++||||||+|+++|.+|++.|.+|+|+++.  .++...    .                  . .   .+.       
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~----~------------------~-~---~~~-------  255 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL----D------------------T-M---GIE-------  255 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee----c------------------c-C---ccc-------
Confidence            589999999999999999999999999999763  322200    0                  0 0   000       


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                           .+.     +  .......++.+.+.+.+.  +++++++++|+++...+   +. +.+.+.+|..+.++.||+|+|
T Consensus       256 -----~~~-----~--~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~---~~-~~V~~~~g~~i~a~~vViAtG  319 (517)
T PRK15317        256 -----NFI-----S--VPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA---GL-IEVELANGAVLKAKTVILATG  319 (517)
T ss_pred             -----ccC-----C--CCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---Ce-EEEEECCCCEEEcCEEEECCC
Confidence                 000     0  001223456666665553  78999999999998864   33 788888888899999999999


Q ss_pred             cch
Q 030042          163 IHS  165 (184)
Q Consensus       163 ~~s  165 (184)
                      ...
T Consensus       320 ~~~  322 (517)
T PRK15317        320 ARW  322 (517)
T ss_pred             CCc
Confidence            864

>TIGR00275 flavoprotein, HI0933 family

Probab=99.48  E-value=1.8e-13  Score=102.69  Aligned_cols=156  Identities=22%  Similarity=0.190  Sum_probs=84.9

Q ss_pred             EEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc----c--ceeeeccc-HHHHHHHcCC-hHHHHh---cCCCccceE
Q 030042            9 VIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT----G--AAISFAPN-AWLALDALGV-SHKLAS---IYPPVNRIS   77 (184)
Q Consensus         9 ~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~----~--~~~~~~~~-~~~~~~~~~~-~~~~~~---~~~~~~~~~   77 (184)
                      +|||||++|+++|+.|+++|.+|+|+||.+..+..    +  +....... ...+...... ...+..   .....+.+.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            59999999999999999999999999998876532    1  11111110 1111111110 000100   000000000


Q ss_pred             EEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEee
Q 030042           78 VTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTK  155 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~  155 (184)
                      +............ .+.  .  .........+.+.+.+.+.  +++++.+++|+++...+   .. +.+.+ +++++.+|
T Consensus        81 ~~~~~Gv~~~~~~-~g~--~--~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~---~~-~~v~~-~~~~i~ad  150 (400)
T TIGR00275        81 FFESLGLELKVEE-DGR--V--FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD---NG-FGVET-SGGEYEAD  150 (400)
T ss_pred             HHHHcCCeeEEec-CCE--e--ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC---Ce-EEEEE-CCcEEEcC
Confidence            0000000000000 000  0  0001123566666666553  89999999999997654   34 66766 45679999


Q ss_pred             EEEecCCcch-----------HHHhhhCCC
Q 030042          156 FLIGCDGIHS-----------TVAWWLGLS  174 (184)
Q Consensus       156 ~vI~a~G~~s-----------~~~~~~~~~  174 (184)
                      .||+|+|.+|           .+.+.+|..
T Consensus       151 ~VIlAtG~~s~p~~gs~G~g~~la~~lG~~  180 (400)
T TIGR00275       151 KVILATGGLSYPQLGSTGDGYEIAESLGHT  180 (400)
T ss_pred             EEEECCCCcccCCCCCCcHHHHHHHHCCCC
Confidence            9999999865           466777765

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN02661 Putative thiazole synthesis

Probab=99.48  E-value=7.4e-13  Score=96.07  Aligned_cols=129  Identities=25%  Similarity=0.314  Sum_probs=77.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCCCCCccc--eeeec-----ccHHHHHHHcCChHHHHhcCCCccc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGLRGTGA--AISFA-----PNAWLALDALGVSHKLASIYPPVNR   75 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
                      .++||+|||||++|+++|+.|++. |.+|+|+|+...+++...  +..+.     ....++++++|+         +++.
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV---------~fd~  161 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGV---------PYDE  161 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCC---------Cccc
Confidence            468999999999999999999976 899999999877654211  11111     112222333322         1100


Q ss_pred             eEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEE------
Q 030042           76 ISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHL------  146 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~------  146 (184)
                      .      +              + .....+...+.+.|.+++   .+++++.++.++++..++  +.. ..+.+      
T Consensus       162 ~------d--------------g-y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grV-aGVVvnw~~v~  217 (357)
T PLN02661        162 Q------E--------------N-YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRV-GGVVTNWALVA  217 (357)
T ss_pred             C------C--------------C-eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEE-EEEEeecchhh
Confidence            0      0              0 000112234444444433   279999999999998765  232 23321      


Q ss_pred             ec--C------cEEEeeEEEecCCcch
Q 030042          147 VD--G------TIVKTKFLIGCDGIHS  165 (184)
Q Consensus       147 ~~--g------~~~~a~~vI~a~G~~s  165 (184)
                      .+  +      ..+.||.||+|||+..
T Consensus       218 ~~~~~~s~~dp~~I~AkaVVlATGh~g  244 (357)
T PLN02661        218 QNHDTQSCMDPNVMEAKVVVSSCGHDG  244 (357)
T ss_pred             hccCCCCccceeEEECCEEEEcCCCCC
Confidence            11  1      2689999999999765

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.48  E-value=1.5e-12  Score=94.89  Aligned_cols=167  Identities=23%  Similarity=0.231  Sum_probs=105.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC------CCCeEEEeccCCCCCcc-ceeeecccHHHHHHHcCChHHHHhcCCCc---
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL------GVEPLVLEKSDGLRGTG-AAISFAPNAWLALDALGVSHKLASIYPPV---   73 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~------g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   73 (184)
                      +.+||+||||||+||++|+.|.|.      .++|.|+|+....++.. .+..+.|.++..|     .+.+++...+.   
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL-----~P~wke~~apl~t~  149 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDEL-----LPDWKEDGAPLNTP  149 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhh-----CcchhhcCCccccc
Confidence            468999999999999999988763      46899999999887654 3444555555443     33333333322   


Q ss_pred             ---cceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec
Q 030042           74 ---NRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD  148 (184)
Q Consensus        74 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~  148 (184)
                         +.+.+......-.... +......  ..+.++-..+.+||-++++  |++|+-+..+..+..+++ +.. ..|-|+|
T Consensus       150 vT~d~~~fLt~~~~i~vPv-~~pm~Nh--GNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsV-kGiaT~D  224 (621)
T KOG2415|consen  150 VTSDKFKFLTGKGRISVPV-PSPMDNH--GNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDED-GSV-KGIATND  224 (621)
T ss_pred             ccccceeeeccCceeecCC-CcccccC--CcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCC-CcE-eeEeecc
Confidence               2333332222111110 1111112  3568889999999999987  899998888888877764 233 4455533


Q ss_pred             ---------------CcEEEeeEEEecCCcchHHHh----hhCCCCCcccc
Q 030042          149 ---------------GTIVKTKFLIGCDGIHSTVAW----WLGLSEPLNVN  180 (184)
Q Consensus       149 ---------------g~~~~a~~vI~a~G~~s~~~~----~~~~~~~~~~~  180 (184)
                                     |-.++|+.-|.|.|.+..+.+    .++++....++
T Consensus       225 ~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~q  275 (621)
T KOG2415|consen  225 VGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQ  275 (621)
T ss_pred             ccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcc
Confidence                           336899999999998765433    33555434333

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=99.47  E-value=1.7e-12  Score=92.45  Aligned_cols=168  Identities=20%  Similarity=0.247  Sum_probs=95.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHh----CCCCeEEEeccCCCCCccceee---------ecc------cHHHHHHH----cC
Q 030042            5 EKDVVIIGAGIAGLATALALKR----LGVEPLVLEKSDGLRGTGAAIS---------FAP------NAWLALDA----LG   61 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~----~g~~v~vie~~~~~~~~~~~~~---------~~~------~~~~~~~~----~~   61 (184)
                      ++||+|||||..|+++|++|.+    .|++|+|+|++......+....         +..      -+.++++.    ++
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl~  165 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHLG  165 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhhc
Confidence            5799999999999999999975    3799999999886543332211         111      11222211    22


Q ss_pred             ChH--HHHhcCCCccceEEEecCCCc-----------------------e-eeeecCC-----CCCCCC-CCeeeeHHHH
Q 030042           62 VSH--KLASIYPPVNRISVTNLGTGA-----------------------T-QETSLTG-----KFGDGS-GPRFIHRKKL  109 (184)
Q Consensus        62 ~~~--~~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~~-----~~~~~~-~~~~~~~~~l  109 (184)
                      +.+  ++.-.+.+...+.+......+                       . ..+++..     ....|. ...++++..|
T Consensus       166 ~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdpw~L  245 (509)
T KOG2853|consen  166 ILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDPWAL  245 (509)
T ss_pred             cccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccccCHHHH
Confidence            211  111112222211111100000                       0 1122211     113333 4458889999


Q ss_pred             HHHHHhhCC--CCeeeeCceEEEEeccCC-----------------CCCcceEEEEecC--cEEEeeEEEecCCcch-HH
Q 030042          110 LQTLADELP--NGTIHFSSKIAAIDSQTH-----------------DGSSPVFIHLVDG--TIVKTKFLIGCDGIHS-TV  167 (184)
Q Consensus       110 ~~~l~~~~~--~~~i~~~~~v~~~~~~~~-----------------~~~~~~~v~~~~g--~~~~a~~vI~a~G~~s-~~  167 (184)
                      +..+++++.  |+.+.. -+|++++....                 ...+ +.|+..++  +++++..+|+|.|+|| .+
T Consensus       246 Ls~~rrk~~~lGv~f~~-GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~-vvV~m~d~~~r~vk~al~V~aAGa~s~Qv  323 (509)
T KOG2853|consen  246 LSGIRRKAITLGVQFVK-GEVVGFEFESQRAVHAFTDDGTAKLRAQRISG-VVVRMNDALARPVKFALCVNAAGAWSGQV  323 (509)
T ss_pred             HHHHHHHhhhhcceEec-ceEEEEEEecccceeeecccchhhhhhcccce-eEEecCchhcCceeEEEEEeccCccHHHH
Confidence            999999876  554443 36666665421                 0122 55555554  6899999999999999 68


Q ss_pred             HhhhCCC
Q 030042          168 AWWLGLS  174 (184)
Q Consensus       168 ~~~~~~~  174 (184)
                      +++.++.
T Consensus       324 ArlAgIG  330 (509)
T KOG2853|consen  324 ARLAGIG  330 (509)
T ss_pred             HHHhccC
Confidence            8888765

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.47  E-value=1.9e-12  Score=101.06  Aligned_cols=41  Identities=37%  Similarity=0.532  Sum_probs=36.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      |.+.++||+|||+|.+|+++|+.+++.|.+|+|+||.+..+
T Consensus         1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~   41 (566)
T PRK06452          1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTR   41 (566)
T ss_pred             CCcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence            66678999999999999999999999999999999986543

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.47  E-value=1.5e-12  Score=101.43  Aligned_cols=113  Identities=21%  Similarity=0.296  Sum_probs=74.1

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |+ ..|||+||||||+|+++|..|++.|++|+|||+.. .++.-   ...                              
T Consensus         1 m~-~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~---~~~------------------------------   45 (555)
T TIGR03143         1 ME-EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQI---TIT------------------------------   45 (555)
T ss_pred             CC-CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceE---Eec------------------------------
Confidence            55 35999999999999999999999999999999853 32210   000                              


Q ss_pred             cCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042           81 LGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI  158 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI  158 (184)
                        .   ....++.       ........+.+.+.+.+.  +++++ +++|+++...+   +. +.+.+.++ .+.++.||
T Consensus        46 --~---~i~~~pg-------~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~---~~-~~V~~~~g-~~~a~~lV  107 (555)
T TIGR03143        46 --S---EVVNYPG-------ILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDG---DI-KTIKTARG-DYKTLAVL  107 (555)
T ss_pred             --c---ccccCCC-------CcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecC---CE-EEEEecCC-EEEEeEEE
Confidence              0   0000000       001223455565555443  67764 77888888654   33 66777666 58899999


Q ss_pred             ecCCcchH
Q 030042          159 GCDGIHST  166 (184)
Q Consensus       159 ~a~G~~s~  166 (184)
                      +|||++..
T Consensus       108 lATGa~p~  115 (555)
T TIGR03143       108 IATGASPR  115 (555)
T ss_pred             ECCCCccC
Confidence            99998653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.47  E-value=1.6e-12  Score=101.88  Aligned_cols=42  Identities=36%  Similarity=0.599  Sum_probs=37.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCC---CCeEEEeccCCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLG---VEPLVLEKSDGLRG   42 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g---~~v~vie~~~~~~~   42 (184)
                      |...++||+|||||++|+++|+.+++.|   .+|+|+||....++
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~   45 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS   45 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence            6667899999999999999999999998   89999999876543

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.46  E-value=1.1e-12  Score=102.64  Aligned_cols=39  Identities=46%  Similarity=0.787  Sum_probs=34.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLR   41 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~   41 (184)
                      |.++||+|||||++|+++|+.+++.  |.+|+|+||....+
T Consensus         1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g   41 (575)
T PRK05945          1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR   41 (575)
T ss_pred             CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence            3579999999999999999999987  47999999986544

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.46  E-value=1.9e-12  Score=98.11  Aligned_cols=40  Identities=35%  Similarity=0.528  Sum_probs=34.6

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      |. .++||+|||+|.+|+++|+.++ .|.+|+|+||.+..++
T Consensus         1 m~-~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg   40 (433)
T PRK06175          1 MN-LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC   40 (433)
T ss_pred             CC-ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence            54 5799999999999999999985 7999999999876544

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.46  E-value=1.5e-12  Score=99.63  Aligned_cols=44  Identities=34%  Similarity=0.536  Sum_probs=40.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      |.|.+|||+||||||+|+.+|+.|++.|.+|+|+|+.+..++..
T Consensus         1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~   44 (461)
T PRK05249          1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGC   44 (461)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccc
Confidence            78889999999999999999999999999999999977666553

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.46  E-value=2e-12  Score=102.08  Aligned_cols=37  Identities=32%  Similarity=0.490  Sum_probs=33.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      .++||+|||+|.+|+++|+.+++.|.+|+|+||...+
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~   70 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP   70 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            3689999999999999999999999999999986554

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.46  E-value=1e-12  Score=99.93  Aligned_cols=36  Identities=44%  Similarity=0.758  Sum_probs=33.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCCCCC
Q 030042            7 DVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRG   42 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~~~~   42 (184)
                      ||+|||+|++|+++|+.++++| .+|+|+||.+..++
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg   37 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGG   37 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCC
Confidence            8999999999999999999999 99999999877554

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07121 hypothetical protein; Validated

Probab=99.45  E-value=4.7e-12  Score=97.61  Aligned_cols=40  Identities=40%  Similarity=0.619  Sum_probs=35.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .++||+|||+|.+|+++|+.++++|.+|+|+||....++.
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~   58 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA   58 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence            4689999999999999999999999999999998765543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.45  E-value=2.2e-12  Score=99.77  Aligned_cols=111  Identities=20%  Similarity=0.314  Sum_probs=75.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      ..+||+||||||+|+++|..|++.|.+|+|+|+.  .++...    .                   ..   .+.      
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~----~-------------------~~---~~~------  256 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVK----D-------------------TV---GIE------  256 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccc----c-------------------Cc---Ccc------
Confidence            3589999999999999999999999999999752  222200    0                   00   000      


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                            .+...     .  .....++.+.+.+...  +++++.+++|+++...+   .. +.+.+.+|+.+.+|.+|+|+
T Consensus       257 ------~~~~~-----~--~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~---~~-~~v~~~~g~~i~~d~lIlAt  319 (515)
T TIGR03140       257 ------NLISV-----P--YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED---GL-IVVTLESGEVLKAKSVIVAT  319 (515)
T ss_pred             ------ccccc-----C--CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC---Ce-EEEEECCCCEEEeCEEEECC
Confidence                  00000     0  0123445555544442  78999999999998654   33 77888888889999999999


Q ss_pred             Ccch
Q 030042          162 GIHS  165 (184)
Q Consensus       162 G~~s  165 (184)
                      |+..
T Consensus       320 Ga~~  323 (515)
T TIGR03140       320 GARW  323 (515)
T ss_pred             CCCc
Confidence            9863

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.43  E-value=5.2e-12  Score=98.18  Aligned_cols=38  Identities=42%  Similarity=0.592  Sum_probs=34.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      .++||+|||+|.+|+++|+.+++.|.+|+|+||....+
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~   52 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD   52 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence            46899999999999999999999999999999987654

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.42  E-value=3.6e-12  Score=99.76  Aligned_cols=34  Identities=41%  Similarity=0.640  Sum_probs=32.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      ||+|||+|++|+++|+.+++.|.+|+|+||....
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~   34 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT   34 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            8999999999999999999999999999998654

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.42  E-value=2e-12  Score=97.83  Aligned_cols=36  Identities=47%  Similarity=0.766  Sum_probs=31.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ||+|||+|++|+++|+.+++.|.+|+|+||.+..++
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg   36 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG   36 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence            899999999999999999999999999999887544

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.41  E-value=2e-12  Score=89.26  Aligned_cols=140  Identities=27%  Similarity=0.272  Sum_probs=81.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc------------eeeecccHHHHHHHcCChHHHHhcCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA------------AISFAPNAWLALDALGVSHKLASIYPPV   73 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (184)
                      -+|+|||+|++|+++|+.|++.|++|+|+||+...++.-.            +..+.+....+++-.   +.+.+.+.  
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V---e~~~~~gl--   76 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV---EALRDDGL--   76 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH---HHHHhCCc--
Confidence            3799999999999999999999999999999876654311            111222222222211   11111111  


Q ss_pred             cceEEEecCCCceeeeecCC--CCCCC---CCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec
Q 030042           74 NRISVTNLGTGATQETSLTG--KFGDG---SGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD  148 (184)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~  148 (184)
                        +..|...     .+.+.+  ....+   +.........+.+.|..   ..+|+++++|+.+...+   +. |++.+++
T Consensus        77 --V~~W~~~-----~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAt---dL~V~~~~rVt~v~~~~---~~-W~l~~~~  142 (331)
T COG3380          77 --VDVWTPA-----VWTFTGDGSPPRGDEDPYVGEPGMSALAKFLAT---DLTVVLETRVTEVARTD---ND-WTLHTDD  142 (331)
T ss_pred             --eeecccc-----ccccccCCCCCCCCCCccccCcchHHHHHHHhc---cchhhhhhhhhhheecC---Ce-eEEEecC
Confidence              1111000     001110  00011   11112234556665544   45799999999999875   45 9999977


Q ss_pred             C-cEEEeeEEEecCCcc
Q 030042          149 G-TIVKTKFLIGCDGIH  164 (184)
Q Consensus       149 g-~~~~a~~vI~a~G~~  164 (184)
                      | ....+|.||+|--+.
T Consensus       143 g~~~~~~d~vvla~PAP  159 (331)
T COG3380         143 GTRHTQFDDVVLAIPAP  159 (331)
T ss_pred             CCcccccceEEEecCCC
Confidence            6 567899999987554

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.41  E-value=5.9e-12  Score=99.30  Aligned_cols=38  Identities=39%  Similarity=0.368  Sum_probs=34.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      +.++||+|||+|.+|+++|+.+++.|.+|+|+||....
T Consensus         6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~   43 (626)
T PRK07803          6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG   43 (626)
T ss_pred             ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            34689999999999999999999999999999998654

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=99.40  E-value=7.2e-12  Score=82.17  Aligned_cols=41  Identities=12%  Similarity=0.226  Sum_probs=33.9

Q ss_pred             CCeee-eCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042          119 NGTIH-FSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus       119 ~~~i~-~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                      ++++. ...+|+++...+   ++ +.+.+.+|..+.+|.||+|+|.
T Consensus       114 ~i~v~~~~~~V~~i~~~~---~~-~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDD---DG-YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEEcC---Cc-EEEEECCCCEEEeCEEEECCCC
Confidence            45543 467999999886   55 8899999999999999999996

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.40  E-value=7.3e-12  Score=98.06  Aligned_cols=38  Identities=34%  Similarity=0.483  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLR   41 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~   41 (184)
                      .++||+|||+|.+|+++|+.+++.  |.+|+|+||....+
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~   42 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMR   42 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence            578999999999999999999987  47999999986544

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.40  E-value=6e-12  Score=98.13  Aligned_cols=37  Identities=41%  Similarity=0.750  Sum_probs=34.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |+ +++||+|||+|.+|+++|+.+++.|.+|+||||.+
T Consensus         1 ~~-~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          1 MA-MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CC-ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            56 57999999999999999999999999999999988

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.39  E-value=6.7e-12  Score=96.11  Aligned_cols=39  Identities=41%  Similarity=0.687  Sum_probs=35.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .+||++||||||+|+++|..|+++|.+|+|+|+.. .++.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~   41 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGT   41 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccc
Confidence            47999999999999999999999999999999876 5544

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.39  E-value=1.2e-11  Score=97.07  Aligned_cols=40  Identities=38%  Similarity=0.397  Sum_probs=33.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      |...++||+|||+|++|+++|+.+++. .+|+|+||....+
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~   40 (583)
T PRK08205          1 MQQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTR   40 (583)
T ss_pred             CcceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCC
Confidence            333578999999999999999999976 8999999976543

>TIGR00551 nadB L-aspartate oxidase

Probab=99.39  E-value=9.7e-12  Score=95.72  Aligned_cols=152  Identities=23%  Similarity=0.219  Sum_probs=82.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc----ee--eec--ccHHHHHH----Hc-C----------
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA----AI--SFA--PNAWLALD----AL-G----------   61 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~----~~--~~~--~~~~~~~~----~~-~----------   61 (184)
                      ++||+|||+|++|+++|+.+++.|. |+|+||.+..++.+.    ++  .+.  ......++    .. +          
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   80 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV   80 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            5799999999999999999999997 999999865433211    11  111  11111111    10 0          


Q ss_pred             ------ChHHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCee---eeHHHHHHHHHhhC---CCCeeeeCceEE
Q 030042           62 ------VSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRF---IHRKKLLQTLADEL---PNGTIHFSSKIA  129 (184)
Q Consensus        62 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~---~~~~i~~~~~v~  129 (184)
                            ..+++.+.+.++.     ....+......+...  ..+....   .....+.+.|.+.+   .+++++.++.++
T Consensus        81 ~~~~~~~i~~L~~~Gv~f~-----~~~~g~~~~~~~gg~--~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~  153 (488)
T TIGR00551        81 VSDARSAVQWLVDQGVLFD-----RHEQGSYALTREGGH--SYRRILHAADATGREVITTLVKKALNHPNIRIIEGENAL  153 (488)
T ss_pred             HHhHHHHHHHHHHcCCcce-----eCCCCCccccCCCCc--CCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEee
Confidence                  1122222222221     101110000000000  0000000   12346666666654   378999999999


Q ss_pred             EEeccCCCCCcceEEEEec-C--cEEEeeEEEecCCcchHH
Q 030042          130 AIDSQTHDGSSPVFIHLVD-G--TIVKTKFLIGCDGIHSTV  167 (184)
Q Consensus       130 ~~~~~~~~~~~~~~v~~~~-g--~~~~a~~vI~a~G~~s~~  167 (184)
                      ++..++  +.. ..+...+ +  ..+.++.||+|||+++.+
T Consensus       154 ~l~~~~--g~v-~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~  191 (488)
T TIGR00551       154 DLLIET--GRV-VGVWVWNRETVETCHADAVVLATGGAGKL  191 (488)
T ss_pred             eeeccC--CEE-EEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence            998654  232 3343332 2  368999999999998864

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.39  E-value=1.2e-11  Score=95.46  Aligned_cols=152  Identities=18%  Similarity=0.167  Sum_probs=82.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc----eee--ec--ccHHHHHHHc-----C---------
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA----AIS--FA--PNAWLALDAL-----G---------   61 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~----~~~--~~--~~~~~~~~~~-----~---------   61 (184)
                      .++||+|||+|.+|+++|+.+++ |.+|+|+||.+..++.+.    ++.  ..  ......++..     +         
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~   80 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY   80 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence            47899999999999999999976 899999999876543321    111  11  1111111111     0         


Q ss_pred             -------ChHHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCe----eeeHHHHHHHHHhhCC-CCeeeeCceEE
Q 030042           62 -------VSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPR----FIHRKKLLQTLADELP-NGTIHFSSKIA  129 (184)
Q Consensus        62 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~-~~~i~~~~~v~  129 (184)
                             ..+++.+.+.+++.-     .++......+...  ..+...    -.....+.+.|.+.+. +++++.++.++
T Consensus        81 ~~~~s~~~i~~L~~~Gv~f~~~-----~~g~~~~~~~gg~--~~~r~~~~~gd~~g~~i~~~L~~~~~~gV~i~~~~~v~  153 (510)
T PRK08071         81 LVEEGPKEIQELIENGMPFDGD-----ETGPLHLGKEGAH--RKRRILHAGGDATGKNLLEHLLQELVPHVTVVEQEMVI  153 (510)
T ss_pred             HHHHHHHHHHHHHHcCCccccC-----CCCceeeccCcCc--cCCeEEecCCCCcHHHHHHHHHHHHhcCCEEEECeEhh
Confidence                   112222333332210     0110000000000  000000    0123456677766654 89999999999


Q ss_pred             EEeccCCCCCcceEEEE--ecCc--EEEeeEEEecCCcchH
Q 030042          130 AIDSQTHDGSSPVFIHL--VDGT--IVKTKFLIGCDGIHST  166 (184)
Q Consensus       130 ~~~~~~~~~~~~~~v~~--~~g~--~~~a~~vI~a~G~~s~  166 (184)
                      ++...+  +.. ..+..  .+++  .+.||.||+|||+.+.
T Consensus       154 ~Li~~~--g~v-~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        154 DLIIEN--GRC-IGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             heeecC--CEE-EEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence            987654  332 33433  2343  6889999999999764

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.39  E-value=2.4e-11  Score=95.33  Aligned_cols=37  Identities=41%  Similarity=0.503  Sum_probs=33.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +.++||+|||+|.+|+++|+.+++.|.+|+|+||...
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~   46 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP   46 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            3568999999999999999999999999999999754

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.39  E-value=4.3e-12  Score=100.42  Aligned_cols=41  Identities=37%  Similarity=0.631  Sum_probs=36.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      |...++||+|||||.+|+++|+.+++.|.+|+|+||.+..+
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~   41 (657)
T PRK08626          1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR   41 (657)
T ss_pred             CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence            66678999999999999999999999999999999976543

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.38  E-value=1.1e-11  Score=96.58  Aligned_cols=35  Identities=31%  Similarity=0.401  Sum_probs=32.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .++||+|||+|.+|+++|+.+ +.|.+|+|+||.+.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~   40 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF   40 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence            468999999999999999999 89999999999764

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.38  E-value=5.8e-12  Score=97.35  Aligned_cols=145  Identities=21%  Similarity=0.224  Sum_probs=83.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-Cccceeeecc---c-HHHHHHHcC-ChHHHHhcCCCccceEEE
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAAISFAP---N-AWLALDALG-VSHKLASIYPPVNRISVT   79 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-~~~~~~~~~~---~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~   79 (184)
                      |||+|||+|++|+.+|..+++.|.+|+++|+..... ..++.....-   . ..+.+..+| ......+....  .+...
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i--~~r~l   78 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGL--QFRVL   78 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhce--eheec
Confidence            699999999999999999999999999999874321 1111111100   0 011112221 11111110000  00111


Q ss_pred             ecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042           80 NLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKF  156 (184)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~  156 (184)
                      ....         +...+++. ..+++..+.+.+.+.+.   ++.++ +.+|+++...++ +.. ..|.+.+|..+.|+.
T Consensus        79 n~sk---------gpAV~~~R-aQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~-g~V-~GV~t~~G~~I~Ad~  145 (617)
T TIGR00136        79 NSSK---------GPAVRATR-AQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDN-DEI-KGVVTQDGLKFRAKA  145 (617)
T ss_pred             ccCC---------CCcccccH-HhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecC-CcE-EEEEECCCCEEECCE
Confidence            0000         00111211 36778888877766553   56665 457888765421 244 778888888999999


Q ss_pred             EEecCCcch
Q 030042          157 LIGCDGIHS  165 (184)
Q Consensus       157 vI~a~G~~s  165 (184)
                      ||+|+|.+.
T Consensus       146 VILATGtfL  154 (617)
T TIGR00136       146 VIITTGTFL  154 (617)
T ss_pred             EEEccCccc
Confidence            999999985

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.38  E-value=1.1e-11  Score=94.77  Aligned_cols=34  Identities=29%  Similarity=0.528  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +||+|||+|++|+++|+.+++.|.+|+|+||.+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999754

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.38  E-value=9.1e-12  Score=98.07  Aligned_cols=38  Identities=39%  Similarity=0.482  Sum_probs=34.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      .++||+|||||.+|+++|+.+++.|.+|+|+||....+
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~   65 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTR   65 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCC
Confidence            36899999999999999999999999999999987543

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.37  E-value=3.6e-11  Score=93.84  Aligned_cols=42  Identities=38%  Similarity=0.644  Sum_probs=37.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      |..+++||+|||+|++|+++|+.++++|.+|+||||.+..++
T Consensus         3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG   44 (557)
T PRK07843          3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG   44 (557)
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence            445689999999999999999999999999999999876654

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.37  E-value=1.7e-11  Score=95.92  Aligned_cols=155  Identities=17%  Similarity=0.127  Sum_probs=84.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccc----ee--eec--ccHHHHHHHc---C---------
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGA----AI--SFA--PNAWLALDAL---G---------   61 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~----~~--~~~--~~~~~~~~~~---~---------   61 (184)
                      .++||+|||||++|+++|+.+++.  |.+|+|+||....++.+.    +.  ...  ......++..   +         
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv   81 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV   81 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence            468999999999999999999986  579999999876543221    11  010  1111111110   0         


Q ss_pred             ---------ChHHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCee--eeHHHHHHHHHhhC---CCCeeeeCce
Q 030042           62 ---------VSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRF--IHRKKLLQTLADEL---PNGTIHFSSK  127 (184)
Q Consensus        62 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~---~~~~i~~~~~  127 (184)
                               ..+++.+.+.++..     ..++......+.... .......  ..-..+...|.+.+   ++++++.++.
T Consensus        82 ~~l~~~s~~~i~~L~~~Gv~f~~-----~~~g~~~~~~~gg~~-~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~  155 (580)
T TIGR01176        82 EYFVAEAPKEMVQLEHWGCPWSR-----KPDGRVNVRRFGGMK-KERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWF  155 (580)
T ss_pred             HHHHHHhHHHHHHHHHcCCccEe-----cCCCceeeeccCCcc-CCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeE
Confidence                     11222233332221     111111001111100 0000000  12345666666654   3689999999


Q ss_pred             EEEEeccCCCCCcceEE---EEecC--cEEEeeEEEecCCcchHH
Q 030042          128 IAAIDSQTHDGSSPVFI---HLVDG--TIVKTKFLIGCDGIHSTV  167 (184)
Q Consensus       128 v~~~~~~~~~~~~~~~v---~~~~g--~~~~a~~vI~a~G~~s~~  167 (184)
                      ++++...+  +.. ..+   ...+|  ..+.|+.||+|||+.+.+
T Consensus       156 v~~Li~~~--g~v-~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       156 VTDLLVDD--GRV-CGLVAIEMAEGRLVTILADAVVLATGGAGRV  197 (580)
T ss_pred             EEEEEeeC--CEE-EEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence            99998754  232 322   33466  368899999999998864

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.36  E-value=1.6e-11  Score=96.51  Aligned_cols=37  Identities=32%  Similarity=0.466  Sum_probs=33.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      .++||+|||||.+|+++|+.+++.|.+|+|+||....
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~   47 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPT   47 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            3589999999999999999999999999999997643

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.36  E-value=2e-12  Score=99.00  Aligned_cols=43  Identities=35%  Similarity=0.613  Sum_probs=37.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      |+ .+||++||||||+|+.+|..|++.|.+|+|+|+.+..++..
T Consensus         1 ~~-~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c   43 (471)
T PRK06467          1 ME-IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC   43 (471)
T ss_pred             CC-ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence            44 47999999999999999999999999999999976665543

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.36  E-value=4.3e-12  Score=96.63  Aligned_cols=36  Identities=33%  Similarity=0.466  Sum_probs=33.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ++|||+|||||++|+.+|+.|+++|.+|+|||+.+.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~   37 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA   37 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence            579999999999999999999999999999999753

>PRK14694 putative mercuric reductase; Provisional

Probab=99.36  E-value=1.5e-12  Score=99.78  Aligned_cols=42  Identities=26%  Similarity=0.438  Sum_probs=36.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      |+..+|||+|||||++|+++|..|++.|.+|+|||+. ..++.
T Consensus         2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGt   43 (468)
T PRK14694          2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGT   43 (468)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccc
Confidence            4556899999999999999999999999999999986 44444

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.36  E-value=3.8e-12  Score=100.08  Aligned_cols=36  Identities=33%  Similarity=0.602  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~   40 (184)
                      ++||+|||||++|+++|+.+++.  |.+|+|+||....
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~   48 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK   48 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence            58999999999999999999998  9999999998653

>TIGR02730 carot_isom carotene isomerase

Probab=99.35  E-value=2e-11  Score=94.26  Aligned_cols=63  Identities=21%  Similarity=0.335  Sum_probs=50.4

Q ss_pred             HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHHhhhC
Q 030042          107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLG  172 (184)
Q Consensus       107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~~  172 (184)
                      ..+.+.|.+.++  |++|+++++|+++...+  +.. +.|.+.+|+.++||.||.|.|.+..+.+.++
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~--~~~-~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~  293 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN--GKA-VGVKLADGEKIYAKRIVSNATRWDTFGKLLK  293 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC--CcE-EEEEeCCCCEEEcCEEEECCChHHHHHHhCC
Confidence            456666666664  89999999999998765  344 7788888988999999999999888777664

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02815 L-aspartate oxidase

Probab=99.35  E-value=1.6e-11  Score=96.09  Aligned_cols=38  Identities=32%  Similarity=0.492  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .++||+|||+|.+|+++|+.+++.| +|+|+||.+..++
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg   65 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES   65 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence            4689999999999999999999999 9999999876544

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.34  E-value=4.1e-11  Score=94.03  Aligned_cols=38  Identities=24%  Similarity=0.418  Sum_probs=34.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      +.+||+|||+|++|+++|+.+++.|.+|+|+||.+..+
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~   39 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR   39 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence            56899999999999999999999999999999977543

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.34  E-value=4.5e-11  Score=93.73  Aligned_cols=157  Identities=22%  Similarity=0.257  Sum_probs=85.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc----cee--eec---ccHHH-HHHHc-------------
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG----AAI--SFA---PNAWL-ALDAL-------------   60 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~----~~~--~~~---~~~~~-~~~~~-------------   60 (184)
                      .++||+|||+|.+|+++|+.+++.|.+|+|+||....++.+    .++  ...   ..+.+ .++..             
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v   85 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI   85 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            46899999999999999999999999999999986543311    011  000   11111 11110             


Q ss_pred             --------CChHHHHhcCCCccceEEEecCCCceeeeecCCCCC-C-C-CCCee-----eeHHHHHHHHHhhCC--CCee
Q 030042           61 --------GVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFG-D-G-SGPRF-----IHRKKLLQTLADELP--NGTI  122 (184)
Q Consensus        61 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~-----~~~~~l~~~l~~~~~--~~~i  122 (184)
                              ...+++.+.+.+++..     .++......+..... . + .....     -.-..+...|.+.+.  ++++
T Consensus        86 ~~~~~~s~~~i~~L~~~Gv~f~~~-----~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i  160 (588)
T PRK08958         86 EYMCKTGPEAILELEHMGLPFSRL-----DDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI  160 (588)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccC-----CCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEE
Confidence                    1123333334433211     111110001111000 0 0 00000     013456777776553  7899


Q ss_pred             eeCceEEEEeccCCCCCcceEEE---EecCc--EEEeeEEEecCCcchHH
Q 030042          123 HFSSKIAAIDSQTHDGSSPVFIH---LVDGT--IVKTKFLIGCDGIHSTV  167 (184)
Q Consensus       123 ~~~~~v~~~~~~~~~~~~~~~v~---~~~g~--~~~a~~vI~a~G~~s~~  167 (184)
                      +.++.++++..+++ +.. ..+.   ..+|+  .+.|+.||+|||+.+.+
T Consensus       161 ~~~~~~~~Li~~~~-g~v-~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  208 (588)
T PRK08958        161 FSEWYALDLVKNQD-GAV-VGCTAICIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_pred             EeCcEEEEEEECCC-CEE-EEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence            99999999987531 333 3343   23553  67899999999998754

>PRK10262 thioredoxin reductase; Provisional

Probab=99.34  E-value=4.1e-11  Score=87.67  Aligned_cols=112  Identities=19%  Similarity=0.285  Sum_probs=69.2

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      .+.+||+||||||+|+++|..|+++|.++++||+. ..++.-.   ..                    .           
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~---~~--------------------~-----------   48 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT---TT--------------------T-----------   48 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee---cC--------------------c-----------
Confidence            36789999999999999999999999999999964 3322200   00                    0           


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEec
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGC  160 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a  160 (184)
                          ....++..      ...++...+.+.+.+...  +.++.++ +|++++..+   .. +.+...++ .+.+|.||+|
T Consensus        49 ----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~---~~-~~v~~~~~-~~~~d~vilA  112 (321)
T PRK10262         49 ----EVENWPGD------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQN---RP-FRLTGDSG-EYTCDALIIA  112 (321)
T ss_pred             ----eECCCCCC------CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecC---Ce-EEEEecCC-EEEECEEEEC
Confidence                00000100      001223344555444432  4555554 566776654   33 66665444 6899999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       113 tG~~~  117 (321)
T PRK10262        113 TGASA  117 (321)
T ss_pred             CCCCC
Confidence            99864

>PRK08275 putative oxidoreductase; Provisional

Probab=99.33  E-value=2e-11  Score=95.27  Aligned_cols=37  Identities=38%  Similarity=0.576  Sum_probs=33.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGL   40 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~   40 (184)
                      .++||+|||+|.+|+++|+.+++.  |.+|+|+||.+..
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            458999999999999999999986  6899999998753

>PRK06370 mercuric reductase; Validated

Probab=99.33  E-value=1.7e-11  Score=93.95  Aligned_cols=37  Identities=30%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      |-|.+||++||||||+|+++|..|++.|.+|+|+|+.
T Consensus         1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   37 (463)
T PRK06370          1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG   37 (463)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3456899999999999999999999999999999986

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.33  E-value=4.7e-12  Score=96.95  Aligned_cols=41  Identities=37%  Similarity=0.523  Sum_probs=36.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      ++||++||||||+|+.+|..+++.|.+|+|+|+....++..
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c   42 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC   42 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence            46999999999999999999999999999999866666553

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.33  E-value=4.5e-12  Score=96.59  Aligned_cols=38  Identities=29%  Similarity=0.472  Sum_probs=34.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      +||++||||||+|+++|..+++.|.+|+|+|+. ..++.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~   39 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGT   39 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCce
Confidence            689999999999999999999999999999984 45544

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.32  E-value=2.6e-11  Score=95.68  Aligned_cols=37  Identities=35%  Similarity=0.471  Sum_probs=34.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      ++||+|||+|.+|+++|+.+++.|.+|+|+||....+
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~   86 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTR   86 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCC
Confidence            5899999999999999999999999999999986544

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.32  E-value=9.9e-12  Score=95.38  Aligned_cols=42  Identities=43%  Similarity=0.631  Sum_probs=36.3

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      |+ ..||++||||||+|+++|..|++.|.+|+|+|+. ..++..
T Consensus         1 ~~-~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c   42 (472)
T PRK05976          1 MA-KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTC   42 (472)
T ss_pred             CC-ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcce
Confidence            44 4799999999999999999999999999999985 455543

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.32  E-value=6.8e-11  Score=92.24  Aligned_cols=39  Identities=38%  Similarity=0.707  Sum_probs=35.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      +++||+|||+| +|+++|+.+++.|.+|+|+||.+..++.
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~   53 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS   53 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence            47999999999 8999999999999999999998777654

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.30  E-value=1e-10  Score=89.66  Aligned_cols=61  Identities=38%  Similarity=0.477  Sum_probs=47.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC----CCCeEEEeccCCCCCcccee-------e--------ecccHHHHHHHcCChHHH
Q 030042            6 KDVVIIGAGIAGLATALALKRL----GVEPLVLEKSDGLRGTGAAI-------S--------FAPNAWLALDALGVSHKL   66 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~----g~~v~vie~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~~~~~~   66 (184)
                      .||+|||||++||++|+.|+++    |.+|+|+|+++..|+..++.       .        -.+...++++++|+....
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~   82 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL   82 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence            6999999999999999999998    99999999999886543221       1        123467778888775443

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.30  E-value=6.8e-11  Score=92.77  Aligned_cols=39  Identities=38%  Similarity=0.635  Sum_probs=35.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .++||+|||+|++|+++|+.+++.|.+|+||||.+..++
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg   49 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG   49 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            478999999999999999999999999999999876544

>PRK09897 hypothetical protein; Provisional

Probab=99.29  E-value=2.8e-11  Score=93.28  Aligned_cols=146  Identities=14%  Similarity=0.163  Sum_probs=76.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCccceeeeccc--HHHHHHHc---CC---hHHHHhcCCCccc
Q 030042            6 KDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTGAAISFAPN--AWLALDAL---GV---SHKLASIYPPVNR   75 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~--~~~~~~~~---~~---~~~~~~~~~~~~~   75 (184)
                      .+|+|||||++|+++|..|.+++  .+|+|||+...+   |.+..+.+.  ...++...   .+   .+.+.++.... .
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~---G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~-~   77 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA---GVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQ-E   77 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC---CcceeecCCCChHHHHhcccccccCCChHHHHHHhhhh-h
Confidence            48999999999999999998764  589999997665   334444331  11111110   00   01111110000 0


Q ss_pred             eEEEecCCCceeeeecCCCCCCCCCCeeeeH---HHHHHHHHhhCC--C--CeeeeCceEEEEeccCCCCCcceEEEEec
Q 030042           76 ISVTNLGTGATQETSLTGKFGDGSGPRFIHR---KKLLQTLADELP--N--GTIHFSSKIAAIDSQTHDGSSPVFIHLVD  148 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~--~--~~i~~~~~v~~~~~~~~~~~~~~~v~~~~  148 (184)
                      ...............  .   ..+....+..   ....+.+.+.++  +  +.++.+++|+++...+   +. +.+.+.+
T Consensus        78 ~~~~~~~g~~~~~l~--~---~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~---~g-~~V~t~~  148 (534)
T PRK09897         78 DSHLQRYGVKKETLH--D---RQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN---AG-VMLATNQ  148 (534)
T ss_pred             HHHHHhcCCcceeec--C---CccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC---CE-EEEEECC
Confidence            000000000000000  0   0011111111   222333334332  3  5677888999998775   44 7788755


Q ss_pred             -CcEEEeeEEEecCCcc
Q 030042          149 -GTIVKTKFLIGCDGIH  164 (184)
Q Consensus       149 -g~~~~a~~vI~a~G~~  164 (184)
                       +..+.+|.||+|+|..
T Consensus       149 gg~~i~aD~VVLAtGh~  165 (534)
T PRK09897        149 DLPSETFDLAVIATGHV  165 (534)
T ss_pred             CCeEEEcCEEEECCCCC
Confidence             4689999999999974

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.29  E-value=8.9e-11  Score=98.33  Aligned_cols=40  Identities=30%  Similarity=0.599  Sum_probs=36.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .++||+|||+|.+|+++|+.+++.|.+|+|+||.+..++.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~  447 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN  447 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence            4689999999999999999999999999999998776543

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.29  E-value=4.7e-11  Score=92.96  Aligned_cols=38  Identities=29%  Similarity=0.379  Sum_probs=33.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .++||+|||+|.+|+++|+.++ .|.+|+|+||.+..++
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg   45 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS   45 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence            5789999999999999999996 4999999999876543

>PLN02507 glutathione reductase

Probab=99.27  E-value=1.9e-11  Score=94.23  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      +||++||||||+|+.+|..+++.|.+|+|+|+
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            58999999999999999999999999999997

>PRK06116 glutathione reductase; Validated

Probab=99.27  E-value=1.5e-11  Score=93.92  Aligned_cols=41  Identities=32%  Similarity=0.534  Sum_probs=35.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      |+ .+||++||||||+|+.+|..|++.|.+|+|+|+. ..++.
T Consensus         1 m~-~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~   41 (450)
T PRK06116          1 MT-KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGT   41 (450)
T ss_pred             CC-CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhh
Confidence            54 4799999999999999999999999999999985 44443

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.27  E-value=1.3e-11  Score=94.03  Aligned_cols=39  Identities=33%  Similarity=0.526  Sum_probs=34.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++|||+||||||+|+.+|..|++.|.+|+|+|+. ..++.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~   39 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGT   39 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccc
Confidence            4699999999999999999999999999999985 35544

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PLN02568 polyamine oxidase

Probab=99.27  E-value=3.1e-10  Score=88.09  Aligned_cols=53  Identities=28%  Similarity=0.493  Sum_probs=44.6

Q ss_pred             HHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042          107 KKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus       107 ~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                      ..|.+.|.+.+++..|+++++|+.|...+   ++ +.|.+.+|+++.||.||+|.-.
T Consensus       242 ~~Li~~La~~L~~~~I~ln~~V~~I~~~~---~~-v~V~~~dG~~~~aD~VIvTvPl  294 (539)
T PLN02568        242 LSVIEALASVLPPGTIQLGRKVTRIEWQD---EP-VKLHFADGSTMTADHVIVTVSL  294 (539)
T ss_pred             HHHHHHHHhhCCCCEEEeCCeEEEEEEeC---Ce-EEEEEcCCCEEEcCEEEEcCCH
Confidence            45788888887666799999999999875   45 8899999988999999999854

>PRK12839 hypothetical protein; Provisional

Probab=99.27  E-value=3.3e-10  Score=88.61  Aligned_cols=39  Identities=38%  Similarity=0.559  Sum_probs=35.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .++||+|||+|++|+++|+.+++.|.+|+|+|+....++
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg   45 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG   45 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            478999999999999999999999999999999876554

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.26  E-value=3.2e-11  Score=91.78  Aligned_cols=37  Identities=32%  Similarity=0.481  Sum_probs=34.2

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |++|||+||||||+|+++|..|++.|.+|+|+|+.+.
T Consensus         1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            3579999999999999999999999999999999764

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.26  E-value=6.4e-11  Score=91.64  Aligned_cols=34  Identities=35%  Similarity=0.461  Sum_probs=30.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .++||+|||+|.+|+++|+.++  +.+|+|+||.+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            4689999999999999999997  569999999876

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.26  E-value=3.9e-10  Score=84.69  Aligned_cols=61  Identities=33%  Similarity=0.483  Sum_probs=50.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCccce--------------eeec-ccHHHHHHHcCChHHHH
Q 030042            7 DVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTGAA--------------ISFA-PNAWLALDALGVSHKLA   67 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~   67 (184)
                      .++|||||++||++||.|++++  .+++|+|+++..++.-++              .... +...+.+.++|+.+.+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~   79 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL   79 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence            6899999999999999999999  899999999888764321              1122 66788889999988887

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.26  E-value=2.7e-11  Score=93.06  Aligned_cols=35  Identities=37%  Similarity=0.597  Sum_probs=32.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      |+ ++||++||||||+|+++|..+++.|.+|+|+|+
T Consensus         1 ~~-~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          1 MS-KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             CC-cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            54 479999999999999999999999999999998

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.25  E-value=2.6e-10  Score=89.08  Aligned_cols=40  Identities=43%  Similarity=0.727  Sum_probs=35.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .++||+|||+|.+|+++|+.+++.|.+|+|||+....++.
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~   44 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS   44 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence            4789999999999999999999999999999998765543

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.25  E-value=2.2e-11  Score=93.28  Aligned_cols=39  Identities=38%  Similarity=0.596  Sum_probs=34.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      +|||+|||||++|+++|..|++.|.+|+|+|+ +..++..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~   39 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTC   39 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCce
Confidence            48999999999999999999999999999999 6666543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.25  E-value=1.6e-10  Score=90.01  Aligned_cols=38  Identities=42%  Similarity=0.487  Sum_probs=33.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .++||+|||+|.+|+++|+.+++. .+|+|+||....++
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g   44 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG   44 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence            368999999999999999999886 79999999876443

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.25  E-value=4e-10  Score=88.43  Aligned_cols=40  Identities=40%  Similarity=0.732  Sum_probs=36.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .++||+|||+|++|+++|+.++++|.+|+|+||....++.
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~   47 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT   47 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence            4789999999999999999999999999999998866543

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.24  E-value=1.3e-10  Score=89.89  Aligned_cols=63  Identities=19%  Similarity=0.388  Sum_probs=48.7

Q ss_pred             HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHHhhhC
Q 030042          107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLG  172 (184)
Q Consensus       107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~~  172 (184)
                      ..+.+.|.+.++  |++|+++++|+++...+  +.. +.|.+.+|+++.||.||.|.+......++++
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~--~~~-~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~  283 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG--GRA-TAVHLADGERLDADAVVSNADLHHTYRRLLP  283 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC--CEE-EEEEECCCCEEECCEEEECCcHHHHHHHhcC
Confidence            456666666554  88999999999998765  233 7788888888999999999998776655553

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK13748 putative mercuric reductase; Provisional

Probab=99.24  E-value=1.4e-10  Score=90.89  Aligned_cols=39  Identities=31%  Similarity=0.445  Sum_probs=35.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .+||++||||||+|+++|..|++.|.+|+|||+. ..++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~  135 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGT  135 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceee
Confidence            4699999999999999999999999999999987 55554

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=99.24  E-value=6.1e-11  Score=91.05  Aligned_cols=81  Identities=16%  Similarity=0.203  Sum_probs=65.7

Q ss_pred             CCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhCCCC
Q 030042           99 SGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLGLSE  175 (184)
Q Consensus        99 ~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~~~~  175 (184)
                      |.-..+++..+.+.|...+.  |+.|..++.|+++....+  +. +.|+|..| .+++..||+|+|.|.+ +.++.+...
T Consensus       179 P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~--~~-~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkv  254 (856)
T KOG2844|consen  179 PGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD--KF-GGVETPHG-SIETECVVNAAGVWAREVGAMAGVKV  254 (856)
T ss_pred             CCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC--Cc-cceeccCc-ceecceEEechhHHHHHhhhhcCCcc
Confidence            34457889999999988876  899999999999987652  43 78999888 6999999999999985 667778888


Q ss_pred             Ccccceec
Q 030042          176 PLNVNIGC  183 (184)
Q Consensus       176 ~~~~~~~~  183 (184)
                      |-++-+.+
T Consensus       255 PL~p~~H~  262 (856)
T KOG2844|consen  255 PLVPMHHA  262 (856)
T ss_pred             cceeeeee
Confidence            87775543

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.23  E-value=2.3e-10  Score=89.77  Aligned_cols=39  Identities=38%  Similarity=0.640  Sum_probs=35.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .++||+|||+|++|+++|+.++++|.+|+|+||.+..++
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG   48 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG   48 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence            468999999999999999999999999999999876654

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.23  E-value=9.9e-11  Score=90.67  Aligned_cols=38  Identities=34%  Similarity=0.572  Sum_probs=34.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .++||+|||+| +|+++|+.+++.|.+|+|+||.+..++
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg   43 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG   43 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            47899999999 999999999999999999999876543

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.23  E-value=2e-10  Score=90.41  Aligned_cols=33  Identities=30%  Similarity=0.490  Sum_probs=30.6

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            8 VVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         8 v~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      |+|||+|++|+++|+.+++.|.+|+|+||.+.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~   33 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP   33 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            689999999999999999999999999998733

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.21  E-value=2.6e-10  Score=87.37  Aligned_cols=40  Identities=43%  Similarity=0.603  Sum_probs=35.2

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      |++||++|||||++|+++|..|++.|.+|+|||+ ...++.
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~   40 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGT   40 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccc
Confidence            3579999999999999999999999999999999 445444

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.21  E-value=1.6e-09  Score=82.76  Aligned_cols=37  Identities=46%  Similarity=0.718  Sum_probs=34.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCc
Q 030042            7 DVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGT   43 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~   43 (184)
                      +|+|||||++||++|+.|++.|  .+|+|+|+.+..|+.
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr   40 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK   40 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcce
Confidence            6999999999999999999987  899999999988764

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.21  E-value=2.6e-11  Score=91.57  Aligned_cols=45  Identities=40%  Similarity=0.599  Sum_probs=38.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceee
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS   48 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~   48 (184)
                      ++||++|||+||+|..+|..+++.|.+|+++|+....++..-..+
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~G   47 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVG   47 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeC
Confidence            579999999999999999999999999999999876665543333

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.21  E-value=5.8e-10  Score=85.55  Aligned_cols=58  Identities=10%  Similarity=0.177  Sum_probs=41.7

Q ss_pred             HHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHHhhh
Q 030042          109 LLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWL  171 (184)
Q Consensus       109 l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~  171 (184)
                      +.+.|.+.++..+|+++++|++++..+   +. +.|.+.+|+++.||.||.|.-. ....+.+
T Consensus       228 l~~~l~~~l~~~~i~~~~~V~~I~~~~---~~-~~v~~~~g~~~~ad~VI~a~p~-~~~~~ll  285 (463)
T PRK12416        228 IIDRLEEVLTETVVKKGAVTTAVSKQG---DR-YEISFANHESIQADYVVLAAPH-DIAETLL  285 (463)
T ss_pred             HHHHHHHhcccccEEcCCEEEEEEEcC---CE-EEEEECCCCEEEeCEEEECCCH-HHHHhhc
Confidence            445555554334699999999999876   44 7888888888999999999843 3334444

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.20  E-value=1.8e-10  Score=87.52  Aligned_cols=62  Identities=16%  Similarity=0.089  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe-cCcEEEeeEEEecCCcchHHHh
Q 030042          107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV-DGTIVKTKFLIGCDGIHSTVAW  169 (184)
Q Consensus       107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-~g~~~~a~~vI~a~G~~s~~~~  169 (184)
                      ..+.+.|.+.++  +++++++++|+++..+++++.. +.|... ++..+.+|.||+|+|..+..++
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v-~gv~~~~~~~~i~ak~VIlAtGG~~~n~~  187 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAH-DGPLTTVGTHRITTQALVLAAGGLGANRD  187 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeE-EEEEEcCCcEEEEcCEEEEcCCCcccCHH
Confidence            456666666554  8999999999999875211222 444443 3357999999999998765433

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.19  E-value=1.2e-09  Score=80.84  Aligned_cols=41  Identities=41%  Similarity=0.673  Sum_probs=37.5

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++.+||+|||+|.+||++|+.|.+.|++|+|+|.++..++.
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR   45 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR   45 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence            35789999999999999999999999999999999887654

>PLN02268 probable polyamine oxidase

Probab=99.17  E-value=7.9e-10  Score=84.20  Aligned_cols=38  Identities=39%  Similarity=0.628  Sum_probs=34.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .+|+|||||++||++|+.|.+.|.+|+|+|+++..++.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr   38 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR   38 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence            37999999999999999999999999999999888654

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.17  E-value=1.5e-09  Score=85.22  Aligned_cols=40  Identities=40%  Similarity=0.648  Sum_probs=35.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .++||+|||+|++|+++|+.++++|.+|+|+|+....++.
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~   54 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT   54 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            3589999999999999999999999999999998765543

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.17  E-value=3.7e-11  Score=82.02  Aligned_cols=32  Identities=59%  Similarity=0.854  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ||+|||||++|+.+|..|++.+.+++++|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            79999999999999999999999999998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.16  E-value=2.4e-10  Score=88.60  Aligned_cols=41  Identities=39%  Similarity=0.541  Sum_probs=36.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      |...++||+|||||.+|+.+|..+++.|.+|+++||.+..+
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            34468999999999999999999999999999999987654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.16  E-value=9.3e-10  Score=90.34  Aligned_cols=36  Identities=39%  Similarity=0.592  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .++||+|||||.+|+++|+.+++.|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            468999999999999999999999999999999775

>PRK07233 hypothetical protein; Provisional

Probab=99.16  E-value=3.9e-10  Score=85.71  Aligned_cols=38  Identities=45%  Similarity=0.677  Sum_probs=35.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      +|+|||||++||++|+.|++.|.+|+|+|+.+.+++..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~   38 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA   38 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence            58999999999999999999999999999999887643

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.15  E-value=1.9e-10  Score=88.23  Aligned_cols=39  Identities=36%  Similarity=0.569  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++||++||||||+|+++|..|++.|.+|+|+|+. ..++.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~   41 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGV   41 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCc
Confidence            4699999999999999999999999999999985 34433

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=99.15  E-value=8.7e-10  Score=78.09  Aligned_cols=171  Identities=22%  Similarity=0.260  Sum_probs=102.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCC--Ccc-------ceeeecccHHHHH-HHcCC---hHHHHh
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLR--GTG-------AAISFAPNAWLAL-DALGV---SHKLAS   68 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~--~~~-------~~~~~~~~~~~~~-~~~~~---~~~~~~   68 (184)
                      +.||.+|||||+.|++.|.+|.-+  +.+|.|+|+.....  .+|       .++.+.|.++..- ..-|.   +....+
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e  126 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE  126 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh
Confidence            579999999999999999998755  88999999976542  222       3555666544331 11110   011111


Q ss_pred             cCCC------------------------------ccceEEEecCCCceeeeecC-CCCCCCCCCeeeeHHHHHHHHHhhC
Q 030042           69 IYPP------------------------------VNRISVTNLGTGATQETSLT-GKFGDGSGPRFIHRKKLLQTLADEL  117 (184)
Q Consensus        69 ~~~~------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~  117 (184)
                      ...+                              ..++.++...+-...+.... -...+.+....++...+...+-+.+
T Consensus       127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF  206 (453)
T KOG2665|consen  127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDF  206 (453)
T ss_pred             cCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHH
Confidence            1111                              11222222111111110000 1123445566788888777777766


Q ss_pred             C--CCeeeeCceEEEEeccCCCCCc-ceEEEEecCcEEEeeEEEecCCcch-HHHhhhCCC
Q 030042          118 P--NGTIHFSSKIAAIDSQTHDGSS-PVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLS  174 (184)
Q Consensus       118 ~--~~~i~~~~~v~~~~~~~~~~~~-~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~  174 (184)
                      +  +.++..|-++.++..+.+.--. .++|....+++++++.||-|+|..| ++....+..
T Consensus       207 ~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~  267 (453)
T KOG2665|consen  207 DFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCE  267 (453)
T ss_pred             HHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCC
Confidence            5  7889999999998877631111 2555555578999999999999877 667666654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.15  E-value=9.7e-10  Score=82.71  Aligned_cols=109  Identities=18%  Similarity=0.190  Sum_probs=69.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      +..+|+|||||++|+.+|..|++.+.  +|+|+++.+...-.               ...+...+...            
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~---------------r~~l~~~~~~~------------   54 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYE---------------RPPLSKSMLLE------------   54 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCC---------------CCCCCHHHHCC------------
Confidence            45689999999999999999999876  79999986542100               00000000000            


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                       ..  ..           .. .+...   +++.+.  +++++.++.|+.+...+      ..|.+.+|+.+.+|.||+||
T Consensus        55 -~~--~~-----------~~-~~~~~---~~~~~~--~i~~~~g~~V~~id~~~------~~v~~~~g~~~~yd~LViAT  108 (396)
T PRK09754         55 -DS--PQ-----------LQ-QVLPA---NWWQEN--NVHLHSGVTIKTLGRDT------RELVLTNGESWHWDQLFIAT  108 (396)
T ss_pred             -CC--cc-----------cc-ccCCH---HHHHHC--CCEEEcCCEEEEEECCC------CEEEECCCCEEEcCEEEEcc
Confidence             00  00           00 00011   112222  78999999999998765      45667788889999999999


Q ss_pred             Ccch
Q 030042          162 GIHS  165 (184)
Q Consensus       162 G~~s  165 (184)
                      |+..
T Consensus       109 Gs~~  112 (396)
T PRK09754        109 GAAA  112 (396)
T ss_pred             CCCC
Confidence            9875

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.15  E-value=1.1e-10  Score=65.35  Aligned_cols=36  Identities=50%  Similarity=0.708  Sum_probs=32.0

Q ss_pred             EECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc
Q 030042           10 IIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA   45 (184)
Q Consensus        10 IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~   45 (184)
                      |||||++|+++|+.|++.|.+|+|+|+.+.+++..+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~   36 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR   36 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence            899999999999999999999999999998876643

...

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.15  E-value=5.1e-10  Score=82.23  Aligned_cols=154  Identities=18%  Similarity=0.263  Sum_probs=72.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCCCCCccceeeecccHH--HHHHHcCChHHHHhcCCCccceEEEec
Q 030042            5 EKDVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRGTGAAISFAPNAW--LALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      .+|+++||.||++|++|..|...+ .+++.||+.+.+.... ++.+....+  ..++.+--   +..-..++..+.+...
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~-gmll~~~~~q~~fl~Dlvt---~~~P~s~~sflnYL~~   77 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHP-GMLLPGARMQVSFLKDLVT---LRDPTSPFSFLNYLHE   77 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTG-GG--SS-B-SS-TTSSSST---TT-TTSTTSHHHHHHH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCC-ccCCCCCccccccccccCc---CcCCCCcccHHHHHHH
Confidence            589999999999999999998875 8999999987653321 111111000  01111000   0000011111111111


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHH---HHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe----cCcEEEe
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRK---KLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV----DGTIVKT  154 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~----~g~~~~a  154 (184)
                      ++.   ...|...     ....+.|.   ++++|+.+++ ...+.++++|++|....+.+...+.|.+.    +++++.|
T Consensus        78 ~~r---l~~f~~~-----~~~~p~R~ef~dYl~Wva~~~-~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~a  148 (341)
T PF13434_consen   78 HGR---LYEFYNR-----GYFFPSRREFNDYLRWVAEQL-DNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRA  148 (341)
T ss_dssp             TT----HHHHHHH-------SS-BHHHHHHHHHHHHCCG-TTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEE
T ss_pred             cCC---hhhhhhc-----CCCCCCHHHHHHHHHHHHHhC-CCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEe
Confidence            110   0011000     11133444   4555566665 34488999999999876321123888874    3468999


Q ss_pred             eEEEecCCcchHHHhhh
Q 030042          155 KFLIGCDGIHSTVAWWL  171 (184)
Q Consensus       155 ~~vI~a~G~~s~~~~~~  171 (184)
                      +.||+|+|....+.+.+
T Consensus       149 r~vVla~G~~P~iP~~~  165 (341)
T PF13434_consen  149 RNVVLATGGQPRIPEWF  165 (341)
T ss_dssp             SEEEE----EE---GGG
T ss_pred             CeEEECcCCCCCCCcch
Confidence            99999999765555444

>PRK14727 putative mercuric reductase; Provisional

Probab=99.14  E-value=1e-09  Score=84.52  Aligned_cols=41  Identities=29%  Similarity=0.458  Sum_probs=36.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      ..+|++|||+|++|+.+|..|++.|.+|+++|+.+..++..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c   55 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCC   55 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEe
Confidence            46899999999999999999999999999999986666554

>PLN02676 polyamine oxidase

Probab=99.14  E-value=3.3e-09  Score=81.67  Aligned_cols=55  Identities=16%  Similarity=0.326  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhhCC--------CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042          106 RKKLLQTLADELP--------NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus       106 ~~~l~~~l~~~~~--------~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~  164 (184)
                      .+.+.+.|.+.+.        +.+|+++++|++|...+   ++ +.|.+.+|+++.||.||+|....
T Consensus       223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~---~g-V~V~~~~G~~~~a~~VIvtvPl~  285 (487)
T PLN02676        223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK---NG-VTVKTEDGSVYRAKYVIVSVSLG  285 (487)
T ss_pred             HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC---Cc-EEEEECCCCEEEeCEEEEccChH
Confidence            4567777777652        25799999999999875   55 89999999899999999999744

>PTZ00058 glutathione reductase; Provisional

Probab=99.13  E-value=1.1e-09  Score=85.28  Aligned_cols=39  Identities=33%  Similarity=0.471  Sum_probs=34.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .+||++|||||++|.++|..+++.|.+|+|||+. ..++.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGt   85 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGT   85 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccc
Confidence            4789999999999999999999999999999986 45544

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.13  E-value=6.7e-10  Score=78.89  Aligned_cols=39  Identities=33%  Similarity=0.567  Sum_probs=33.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      ..|+|||+|.+||+++..+...|-.|+++|+....++.+
T Consensus        10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS   48 (477)
T KOG2404|consen   10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS   48 (477)
T ss_pred             CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence            479999999999999999988776799999988776543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.12  E-value=2.8e-10  Score=93.23  Aligned_cols=39  Identities=28%  Similarity=0.440  Sum_probs=34.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ..+|+||||||+||++|+.|++.|++|+|||+.+.+++.
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~  344 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV  344 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce
Confidence            368999999999999999999999999999998765543

>PLN02546 glutathione reductase

Probab=99.12  E-value=2e-10  Score=89.42  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=31.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      .+||++|||+|++|+.+|..+++.|.+|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            358999999999999999999999999999996

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.11  E-value=1.1e-09  Score=90.66  Aligned_cols=38  Identities=39%  Similarity=0.633  Sum_probs=34.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .+||+||||||+|+++|+.|++.|.+|+|+|+.+..++
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG  200 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGG  200 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            57999999999999999999999999999999877644

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.10  E-value=1.5e-09  Score=63.03  Aligned_cols=80  Identities=33%  Similarity=0.398  Sum_probs=60.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCce
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGAT   86 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (184)
                      +++|||||+.|+-+|..|++.|.+|+++++.+.+...                                           
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~-------------------------------------------   37 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG-------------------------------------------   37 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-------------------------------------------
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-------------------------------------------
Confidence            4899999999999999999999999999998764210                                           


Q ss_pred             eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC
Q 030042           87 QETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG  149 (184)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g  149 (184)
                                .  +  .-....+.+.+.+.  |+++++++++.++..++   ++ +.|.++||
T Consensus        38 ----------~--~--~~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~---~~-~~V~~~~g   80 (80)
T PF00070_consen   38 ----------F--D--PDAAKILEEYLRKR--GVEVHTNTKVKEIEKDG---DG-VEVTLEDG   80 (80)
T ss_dssp             ----------S--S--HHHHHHHHHHHHHT--TEEEEESEEEEEEEEET---TS-EEEEEETS
T ss_pred             ----------c--C--HHHHHHHHHHHHHC--CCEEEeCCEEEEEEEeC---CE-EEEEEecC
Confidence                      0  0  00123445555555  89999999999999887   44 55888776

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.09  E-value=4.1e-10  Score=83.99  Aligned_cols=149  Identities=17%  Similarity=0.210  Sum_probs=78.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC---CCCeEEEeccCCCCCccceeeecccHHHHHHHc---CChHHHHhcCCCccceEE
Q 030042            5 EKDVVIIGAGIAGLATALALKRL---GVEPLVLEKSDGLRGTGAAISFAPNAWLALDAL---GVSHKLASIYPPVNRISV   78 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   78 (184)
                      +++|+|||||++|+.+|.+|.+.   ..+|.|+|+.+..   |.|+.|++..-..+-..   ...-...+.  + ..+.-
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~---G~GiaYs~~~p~~~lNv~a~~mS~~~pD~--p-~~F~~   74 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF---GQGIAYSTEEPEHLLNVPAARMSAFAPDI--P-QDFVR   74 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc---CCCccCCCCCchhhhccccccccccCCCC--c-hHHHH
Confidence            37999999999999999999875   2249999998876   45555554332111111   000000000  0 00000


Q ss_pred             EecCC----CceeeeecCCCCCCCCCCeeeeHHHH-------HHHHHhhCCCCe-eeeCceEEEEeccCCCCCcceEEEE
Q 030042           79 TNLGT----GATQETSLTGKFGDGSGPRFIHRKKL-------LQTLADELPNGT-IHFSSKIAAIDSQTHDGSSPVFIHL  146 (184)
Q Consensus        79 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~l~~~~~~~~-i~~~~~v~~~~~~~~~~~~~~~v~~  146 (184)
                      |....    .......+     +  ...+..|..+       .+.|.+..+... .+..++.+++.+.+ ++.+ +.+.+
T Consensus        75 WL~~~~~~~~d~~~~~~-----d--~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~-n~~~-~~~~~  145 (474)
T COG4529          75 WLQKQLQRYRDPEDINH-----D--GQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDT-NAGG-YLVTT  145 (474)
T ss_pred             HHHhcccccCChhhcCC-----c--cccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceecc-CCce-EEEec
Confidence            00000    00000000     1  1112222222       233333333222 34466777777764 2344 88899


Q ss_pred             ecCcEEEeeEEEecCCcchHHH
Q 030042          147 VDGTIVKTKFLIGCDGIHSTVA  168 (184)
Q Consensus       147 ~~g~~~~a~~vI~a~G~~s~~~  168 (184)
                      .+|+...||.+|+|||+.....
T Consensus       146 ~~g~~~~ad~~Vlatgh~~~~~  167 (474)
T COG4529         146 ADGPSEIADIIVLATGHSAPPA  167 (474)
T ss_pred             CCCCeeeeeEEEEeccCCCCCc
Confidence            9999999999999999765433

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.08  E-value=6.9e-10  Score=84.74  Aligned_cols=34  Identities=41%  Similarity=0.594  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCC
Q 030042            7 DVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGL   40 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~   40 (184)
                      +|+|||||++|+++|..|++.+  .+|+|||+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            6999999999999999999875  489999997653

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.08  E-value=2.8e-10  Score=85.58  Aligned_cols=45  Identities=29%  Similarity=0.381  Sum_probs=37.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-Ccccee
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAAI   47 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-~~~~~~   47 (184)
                      ..+|||+|||||.+|.-+|.-.+-+|+++.++|+++.-. .++++.
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkST  110 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKST  110 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccch
Confidence            356999999999999999999999999999999987543 334443

>TIGR02053 MerA mercuric reductase

Probab=99.06  E-value=4.3e-10  Score=86.26  Aligned_cols=37  Identities=41%  Similarity=0.633  Sum_probs=33.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ||++||||||+|+++|..|++.|.+|+|+|+.. .++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~   37 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGT   37 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCC
Confidence            799999999999999999999999999999865 4444

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.03  E-value=2e-08  Score=77.59  Aligned_cols=40  Identities=40%  Similarity=0.470  Sum_probs=35.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC----CCCeEEEeccCCCCCcc
Q 030042            5 EKDVVIIGAGIAGLATALALKRL----GVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~----g~~v~vie~~~~~~~~~   44 (184)
                      +.+++|||||++||++|+.|++.    |.+|+|+|+.+.+++.-
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~   65 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL   65 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence            46899999999999999999985    67999999999877653

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.03  E-value=9.5e-10  Score=84.96  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      +||++||||||+|+++|..|+++|.+|+|+|+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            689999999999999999999999999999973

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.03  E-value=4.4e-10  Score=86.53  Aligned_cols=54  Identities=19%  Similarity=0.276  Sum_probs=43.4

Q ss_pred             HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042          107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus       107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                      ..+.+.|.+.++  |++|+++++|++|...+  +.+ +++.+.+|+.+.+|.||.+...
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~--g~g-~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILVEG--GKG-VGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCceEEEEEeC--Ccc-eEEeccccceeccceeEecCch
Confidence            345566666664  89999999999999887  355 8888888878899999988876

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=8.1e-10  Score=79.24  Aligned_cols=110  Identities=22%  Similarity=0.391  Sum_probs=75.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEE-eccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVL-EKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vi-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .|||+||||||+|.++|.+.+|.|++.-++ ||.   +++    .        ++.+++.                    
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerf---GGQ----v--------ldT~~IE--------------------  255 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERF---GGQ----V--------LDTMGIE--------------------  255 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhh---CCe----e--------ccccchh--------------------
Confidence            589999999999999999999999987665 442   111    0        0000000                    


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                            .|..       ......++|...|.++.+  .+.+....+.+++.+....+.- ..|.+.+|...+++.||++|
T Consensus       256 ------NfIs-------v~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l-~ev~l~nGavLkaktvIlst  321 (520)
T COG3634         256 ------NFIS-------VPETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGL-IEVELANGAVLKARTVILAT  321 (520)
T ss_pred             ------heec-------cccccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCcc-EEEEecCCceeccceEEEec
Confidence                  0000       001122566666666665  6777777788888886543344 89999999999999999999


Q ss_pred             Cc
Q 030042          162 GI  163 (184)
Q Consensus       162 G~  163 (184)
                      |+
T Consensus       322 GA  323 (520)
T COG3634         322 GA  323 (520)
T ss_pred             Cc
Confidence            97

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.01  E-value=8e-09  Score=77.30  Aligned_cols=107  Identities=20%  Similarity=0.355  Sum_probs=77.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------  179 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS------------------------------------------  179 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch------------------------------------------
Confidence            47999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                           .     . +.   .-...+.+.+.+.  ++++++++++.++...+   .. +.+.+.+|+++.+|.||.|+|..+
T Consensus       180 -----~-----~-~~---~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~D~vI~a~G~~p  239 (377)
T PRK04965        180 -----L-----M-PP---EVSSRLQHRLTEM--GVHLLLKSQLQGLEKTD---SG-IRATLDSGRSIEVDAVIAAAGLRP  239 (377)
T ss_pred             -----h-----C-CH---HHHHHHHHHHHhC--CCEEEECCeEEEEEccC---CE-EEEEEcCCcEEECCEEEECcCCCc
Confidence                 0     0 00   0012344444443  89999999999998754   34 678888898999999999999855


Q ss_pred             --HHHhhhCCC
Q 030042          166 --TVAWWLGLS  174 (184)
Q Consensus       166 --~~~~~~~~~  174 (184)
                        .+.+.+++.
T Consensus       240 ~~~l~~~~gl~  250 (377)
T PRK04965        240 NTALARRAGLA  250 (377)
T ss_pred             chHHHHHCCCC
Confidence              355555543

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.01  E-value=5.3e-10  Score=87.82  Aligned_cols=34  Identities=26%  Similarity=0.547  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHH----hCCCCeEEEeccCCC
Q 030042            7 DVVIIGAGIAGLATALALK----RLGVEPLVLEKSDGL   40 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~----~~g~~v~vie~~~~~   40 (184)
                      ||+|||||.+|+++|+.++    +.|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    679999999997643

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK12831 putative oxidoreductase; Provisional

Probab=99.01  E-value=7.3e-10  Score=84.83  Aligned_cols=38  Identities=34%  Similarity=0.521  Sum_probs=34.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..||+||||||+|+++|+.|+++|++|+|+|+.+.+++
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG  177 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG  177 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            46999999999999999999999999999998766543

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.00  E-value=2.5e-09  Score=87.38  Aligned_cols=38  Identities=45%  Similarity=0.626  Sum_probs=34.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..+|+||||||+|+++|+.|++.|++|+|+|+.+.+++
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG  576 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG  576 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCc
Confidence            35899999999999999999999999999999876543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.00  E-value=6.4e-09  Score=79.85  Aligned_cols=33  Identities=36%  Similarity=0.636  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|++|||+|++|+.+|..+++.|.+|+++|+..
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            389999999999999999999999999999864

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.00  E-value=7.9e-09  Score=78.77  Aligned_cols=111  Identities=15%  Similarity=0.173  Sum_probs=66.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            7 DVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      +|+|||||++|+.+|..|++.  +.+|+|||+.+...-...+       +         +.+...             . 
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~-------l---------p~~~~~-------------~-   52 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCA-------L---------PYYIGE-------------V-   52 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCC-------c---------chhhcC-------------c-
Confidence            799999999999999999876  5689999997653211000       0         000000             0 


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec-Cc--EEEeeEEEecC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD-GT--IVKTKFLIGCD  161 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~-g~--~~~a~~vI~a~  161 (184)
                       ....         .....+.+.    .+.+.. +++++.+++|+++...+   +. +.+...+ ++  .+.+|++|+||
T Consensus        53 -~~~~---------~~~~~~~~~----~~~~~~-~i~v~~~~~V~~Id~~~---~~-v~~~~~~~~~~~~~~yd~lviAt  113 (438)
T PRK13512         53 -VEDR---------KYALAYTPE----KFYDRK-QITVKTYHEVIAINDER---QT-VTVLNRKTNEQFEESYDKLILSP  113 (438)
T ss_pred             -cCCH---------HHcccCCHH----HHHHhC-CCEEEeCCEEEEEECCC---CE-EEEEECCCCcEEeeecCEEEECC
Confidence             0000         000011111    222222 78899999999998775   33 5555433 22  46899999999


Q ss_pred             CcchH
Q 030042          162 GIHST  166 (184)
Q Consensus       162 G~~s~  166 (184)
                      |+...
T Consensus       114 Gs~~~  118 (438)
T PRK13512        114 GASAN  118 (438)
T ss_pred             CCCCC
Confidence            98653

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.99  E-value=3.7e-09  Score=79.11  Aligned_cols=104  Identities=14%  Similarity=0.221  Sum_probs=65.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            6 KDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .+++|||||++|+.+|..|++.  ..+|+||++.+...-...  .+              ...                 
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~--~l--------------~~~-----------------   49 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKP--DL--------------SHV-----------------   49 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcC--cC--------------cHH-----------------
Confidence            4999999999999999999875  458999998764211000  00              000                 


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHH----HHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLL----QTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG  159 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~  159 (184)
                             +..         .....++.    +.+.+.. +++++.+++|+++...+      ..+.+ ++..+.+|.||+
T Consensus        50 -------~~~---------~~~~~~~~~~~~~~~~~~~-gv~~~~~~~V~~id~~~------~~v~~-~~~~~~yd~LVl  105 (377)
T PRK04965         50 -------FSQ---------GQRADDLTRQSAGEFAEQF-NLRLFPHTWVTDIDAEA------QVVKS-QGNQWQYDKLVL  105 (377)
T ss_pred             -------HhC---------CCCHHHhhcCCHHHHHHhC-CCEEECCCEEEEEECCC------CEEEE-CCeEEeCCEEEE
Confidence                   000         00011111    1122222 78999999999998764      33444 456899999999


Q ss_pred             cCCcchH
Q 030042          160 CDGIHST  166 (184)
Q Consensus       160 a~G~~s~  166 (184)
                      |||+...
T Consensus       106 ATG~~~~  112 (377)
T PRK04965        106 ATGASAF  112 (377)
T ss_pred             CCCCCCC
Confidence            9998653

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.99  E-value=4.9e-09  Score=77.64  Aligned_cols=58  Identities=16%  Similarity=0.383  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          106 RKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       106 ~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      -.++.+.+.+..+  |++++|+++|++++..+  +.. ..|.+.+|.++.++.||+|.|..++
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~-~~v~~~~g~~i~~~~vvlA~Grsg~  231 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIED--NEV-LGVKLTKGEEIEADYVVLAPGRSGR  231 (486)
T ss_pred             hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC--Cce-EEEEccCCcEEecCEEEEccCcchH
Confidence            3456666666664  89999999999999876  233 7888999999999999999998764

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.99  E-value=5.3e-09  Score=78.13  Aligned_cols=111  Identities=19%  Similarity=0.227  Sum_probs=65.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc--------ceeeecccHHHHHHHcCChH-HHHhcCCCccce
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG--------AAISFAPNAWLALDALGVSH-KLASIYPPVNRI   76 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   76 (184)
                      .||+|||||++|+.+|+.|+++|++|+|+|+.+......        +....+..+...+...|+|. ++.....    .
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs----l   78 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS----L   78 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc----h
Confidence            599999999999999999999999999999876543211        11223333455566677775 3333221    1


Q ss_pred             EEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEE
Q 030042           77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAI  131 (184)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~  131 (184)
                      .+....     ....     ........++..+.+.|.+.+.   +++++ ..+|+++
T Consensus        79 ~~~aad-----~~~v-----PA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l  125 (436)
T PRK05335         79 IMEAAD-----AHRV-----PAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEI  125 (436)
T ss_pred             heeccc-----ccCC-----CCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhcc
Confidence            111000     0000     1112346778877777777653   56665 4455544

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.98  E-value=1.1e-08  Score=81.07  Aligned_cols=41  Identities=34%  Similarity=0.545  Sum_probs=35.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC-CCCCcc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD-GLRGTG   44 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~-~~~~~~   44 (184)
                      .+||++|||+|++|..+|..+++.|.+|+|||++. ..++..
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtC  156 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTC  156 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccce
Confidence            36899999999999999999999999999999752 455543

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.97  E-value=1.6e-08  Score=76.25  Aligned_cols=105  Identities=24%  Similarity=0.272  Sum_probs=75.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|+.|+-+|..|++.|.+|+|+|+.+.+...                         .                
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------~----------------  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR-------------------------N----------------  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh-------------------------h----------------
Confidence            47999999999999999999999999999986542100                         0                


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ..+    .....+.+.+.+.  +++++++++++++...    +. +.+.+.+|+++.+|.||.|+|...
T Consensus       184 -----------~~~----~~~~~l~~~l~~~--GV~i~~~~~V~~i~~~----~~-~~v~l~~g~~i~aD~Vv~a~G~~p  241 (396)
T PRK09754        184 -----------APP----PVQRYLLQRHQQA--GVRILLNNAIEHVVDG----EK-VELTLQSGETLQADVVIYGIGISA  241 (396)
T ss_pred             -----------cCH----HHHHHHHHHHHHC--CCEEEeCCeeEEEEcC----CE-EEEEECCCCEEECCEEEECCCCCh
Confidence                       000    0012233344333  8999999999998762    23 667788888999999999999865


Q ss_pred             H--HHhhhCC
Q 030042          166 T--VAWWLGL  173 (184)
Q Consensus       166 ~--~~~~~~~  173 (184)
                      .  +.+.+++
T Consensus       242 n~~l~~~~gl  251 (396)
T PRK09754        242 NDQLAREANL  251 (396)
T ss_pred             hhHHHHhcCC
Confidence            3  4444454

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.96  E-value=3.5e-09  Score=86.77  Aligned_cols=38  Identities=39%  Similarity=0.552  Sum_probs=34.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .++|+||||||+|+++|+.|++.|++|+|+|+.+.+++
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG  574 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG  574 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCc
Confidence            36999999999999999999999999999999876543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.96  E-value=2.6e-09  Score=86.91  Aligned_cols=108  Identities=17%  Similarity=0.123  Sum_probs=69.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC----CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            5 EKDVVIIGAGIAGLATALALKRL----GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~----g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      ..+|+|||+|++|+.+|..|.+.    +.+|+||++.+.+.-.       +        ..+...+.             
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~-------r--------~~L~~~~~-------------   54 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYD-------R--------VHLSSYFS-------------   54 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCccc-------C--------CcchHhHc-------------
Confidence            34899999999999999999754    4789999987654211       0        00000000             


Q ss_pred             cCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEec
Q 030042           81 LGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGC  160 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a  160 (184)
                        ......+             ...   ...++.+.  +++++.+++|+++....      ..|.+.+|+.+.+|.||+|
T Consensus        55 --~~~~~~l-------------~~~---~~~~~~~~--gI~~~~g~~V~~Id~~~------~~V~~~~G~~i~yD~LVIA  108 (847)
T PRK14989         55 --HHTAEEL-------------SLV---REGFYEKH--GIKVLVGERAITINRQE------KVIHSSAGRTVFYDKLIMA  108 (847)
T ss_pred             --CCCHHHc-------------cCC---CHHHHHhC--CCEEEcCCEEEEEeCCC------cEEEECCCcEEECCEEEEC
Confidence              0000000             000   01222222  89999999999987764      5577788888999999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      ||+...
T Consensus       109 TGs~p~  114 (847)
T PRK14989        109 TGSYPW  114 (847)
T ss_pred             CCCCcC
Confidence            998654

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=5.2e-10  Score=84.44  Aligned_cols=141  Identities=24%  Similarity=0.298  Sum_probs=80.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC----------CCCccceeeecccHHHHHHHcC-ChHHHHhcCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG----------LRGTGAAISFAPNAWLALDALG-VSHKLASIYPP   72 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   72 (184)
                      ..|||+|||||-+|+-+|...+|.|.+++++-.+..          .++.+.++....     ++.+| +.....+....
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrE-----IDALGG~Mg~~~D~~~I   77 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVRE-----IDALGGLMGKAADKAGI   77 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEe-----ehhccchHHHhhhhcCC
Confidence            469999999999999999999999999999976542          233333332211     11111 01111010000


Q ss_pred             ccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecC
Q 030042           73 VNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG  149 (184)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g  149 (184)
                        .+.+.+...         +...+++ -.+.++..+.+++.+...   +..++. ..|+++...+  ++.++.|.+.+|
T Consensus        78 --Q~r~LN~sK---------GPAVra~-RaQaDk~~Y~~~mk~~le~~~NL~l~q-~~v~dli~e~--~~~v~GV~t~~G  142 (621)
T COG0445          78 --QFRMLNSSK---------GPAVRAP-RAQADKWLYRRAMKNELENQPNLHLLQ-GEVEDLIVEE--GQRVVGVVTADG  142 (621)
T ss_pred             --chhhccCCC---------cchhcch-hhhhhHHHHHHHHHHHHhcCCCceehH-hhhHHHhhcC--CCeEEEEEeCCC
Confidence              001111111         1111111 113444455555554443   566554 5777887755  342388999999


Q ss_pred             cEEEeeEEEecCCcc
Q 030042          150 TIVKTKFLIGCDGIH  164 (184)
Q Consensus       150 ~~~~a~~vI~a~G~~  164 (184)
                      ..+.|+.||++||-+
T Consensus       143 ~~~~a~aVVlTTGTF  157 (621)
T COG0445         143 PEFHAKAVVLTTGTF  157 (621)
T ss_pred             CeeecCEEEEeeccc
Confidence            999999999999975

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.96  E-value=3.5e-09  Score=81.19  Aligned_cols=32  Identities=28%  Similarity=0.556  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +++||||||+|+++|..|++.|.+|+|+|+..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            79999999999999999999999999999864

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.95  E-value=3.8e-09  Score=76.68  Aligned_cols=41  Identities=37%  Similarity=0.575  Sum_probs=37.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      .++|++||||||.|..+|...+|.|++.+.+|++...++..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTc   78 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTC   78 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCcee
Confidence            35899999999999999999999999999999988887654

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.95  E-value=2.4e-08  Score=74.74  Aligned_cols=67  Identities=13%  Similarity=0.198  Sum_probs=47.1

Q ss_pred             HHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCcc-hH-HHhhh-CCCCCcc
Q 030042          109 LLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGIH-ST-VAWWL-GLSEPLN  178 (184)
Q Consensus       109 l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~~-s~-~~~~~-~~~~~~~  178 (184)
                      +.+.|.+.++  |++++.+++|+++...+  +.. ..|.+.++  .+++||.||+|+|+| |. +.+.+ .+.+|.+
T Consensus       265 L~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v-~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif  338 (419)
T TIGR03378       265 LEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRV-TRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIF  338 (419)
T ss_pred             HHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeE-EEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeecc
Confidence            4455666554  78999999999988765  233 55666665  489999999999999 74 54444 4445554

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.94  E-value=6.5e-09  Score=80.07  Aligned_cols=33  Identities=30%  Similarity=0.554  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      +||++|||+|++|+.+|..+++.|.+|+++|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            589999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.94  E-value=3.9e-09  Score=85.57  Aligned_cols=106  Identities=13%  Similarity=0.100  Sum_probs=67.9

Q ss_pred             EEEECCCHHHHHHHHHHHhC---CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            8 VVIIGAGIAGLATALALKRL---GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         8 v~IiGgG~~Gl~~A~~l~~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      |+|||+|++|+.+|..|.+.   +.+|+|||+.+.+.-.       +..        + ..+.......           
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~-------r~~--------L-~~~l~g~~~~-----------   53 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYN-------RIL--------L-SSVLQGEADL-----------   53 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcc-------ccc--------c-cHHHCCCCCH-----------
Confidence            58999999999999998764   4689999987654211       000        0 0000000000           


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~  164 (184)
                        ..+             ...   ..+++.+.  +++++.+++|+++....      ..|.+.+|+++.+|.||+|||+.
T Consensus        54 --~~l-------------~~~---~~~~~~~~--gv~~~~g~~V~~Id~~~------k~V~~~~g~~~~yD~LVlATGs~  107 (785)
T TIGR02374        54 --DDI-------------TLN---SKDWYEKH--GITLYTGETVIQIDTDQ------KQVITDAGRTLSYDKLILATGSY  107 (785)
T ss_pred             --HHc-------------cCC---CHHHHHHC--CCEEEcCCeEEEEECCC------CEEEECCCcEeeCCEEEECCCCC
Confidence              000             000   11222222  89999999999998765      56778888889999999999986


Q ss_pred             hH
Q 030042          165 ST  166 (184)
Q Consensus       165 s~  166 (184)
                      ..
T Consensus       108 p~  109 (785)
T TIGR02374       108 PF  109 (785)
T ss_pred             cC
Confidence            53

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.93  E-value=1.7e-08  Score=76.69  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=31.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+.+|+|||||.+|+.+|..|.+.+.+|+|||+.+.
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            457999999999999999999877789999998764

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.93  E-value=9.2e-09  Score=77.09  Aligned_cols=62  Identities=13%  Similarity=0.296  Sum_probs=53.4

Q ss_pred             CeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          101 PRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       101 ~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      ..++++..+...|.+.+. |++++++++|++++..+   +. +.|.+.+|..++||.||+|+|.++.
T Consensus       129 ~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~---~~-~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       129 GGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDG---EG-WQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             CcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcC---Ce-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence            357788999999999887 88999999999998754   44 8899989887999999999999874

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.93  E-value=2.3e-08  Score=75.14  Aligned_cols=35  Identities=31%  Similarity=0.458  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      +||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            48999999999999999999999999999987654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.92  E-value=2.8e-09  Score=82.02  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=31.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCCeEEEecc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~   37 (184)
                      ++||++|||||++|..+|..+++. |.+|+|||+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            579999999999999999999996 8999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.91  E-value=3.9e-09  Score=78.60  Aligned_cols=101  Identities=12%  Similarity=0.068  Sum_probs=64.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhC---CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            7 DVVIIGAGIAGLATALALKRL---GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      +|+|||||++|+.+|..|.++   +.+|+|||+.+...-.       +.          .+.+...              
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~-------~~----------~~~~~~g--------------   49 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYS-------GM----------LPGMIAG--------------   49 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCccc-------ch----------hhHHHhe--------------
Confidence            489999999999999999643   5789999987542111       00          0000000              


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHH----HHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKL----LQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG  159 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~  159 (184)
                                         .....++    .+.+.+.  +++++.+ +|+++...+      -+|.+.+|+++.+|+||+
T Consensus        50 -------------------~~~~~~~~~~~~~~~~~~--gv~~~~~-~v~~id~~~------~~V~~~~g~~~~yD~Lvi  101 (364)
T TIGR03169        50 -------------------HYSLDEIRIDLRRLARQA--GARFVIA-EATGIDPDR------RKVLLANRPPLSYDVLSL  101 (364)
T ss_pred             -------------------eCCHHHhcccHHHHHHhc--CCEEEEE-EEEEEeccc------CEEEECCCCcccccEEEE
Confidence                               0001111    1222222  7887664 898988765      457778888899999999


Q ss_pred             cCCcchH
Q 030042          160 CDGIHST  166 (184)
Q Consensus       160 a~G~~s~  166 (184)
                      |+|+...
T Consensus       102 AtG~~~~  108 (364)
T TIGR03169       102 DVGSTTP  108 (364)
T ss_pred             ccCCCCC
Confidence            9997653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.90  E-value=3.8e-09  Score=85.48  Aligned_cols=37  Identities=35%  Similarity=0.469  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      ..+|+||||||+|+++|+.|++.|++|+|+|+.+.++
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G  467 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG  467 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            4699999999999999999999999999999976554

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.8e-08  Score=68.29  Aligned_cols=116  Identities=20%  Similarity=0.269  Sum_probs=74.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      +.+|+|||+||++-.+|+++++..++.+++|--..-+ .+.+-.|                           ...-    
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~-i~pGGQL---------------------------tTTT----   55 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG-IAPGGQL---------------------------TTTT----   55 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC-cCCCcee---------------------------eeee----
Confidence            4589999999999999999999999999999643211 1000000                           0000    


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                        ..-.|++.      .--+.-.+|++.++++..  |.+++.+ .|.++....   . ++.+.++.+ .+.+|.||.|+|
T Consensus        56 --~veNfPGF------Pdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss---k-pF~l~td~~-~v~~~avI~atG  121 (322)
T KOG0404|consen   56 --DVENFPGF------PDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS---K-PFKLWTDAR-PVTADAVILATG  121 (322)
T ss_pred             --ccccCCCC------CcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC---C-CeEEEecCC-ceeeeeEEEecc
Confidence              01112211      112344688888888875  5666554 666666654   3 377877554 689999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      +...
T Consensus       122 AsAk  125 (322)
T KOG0404|consen  122 ASAK  125 (322)
T ss_pred             ccee
Confidence            8643

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.89  E-value=2.1e-08  Score=75.14  Aligned_cols=148  Identities=22%  Similarity=0.253  Sum_probs=85.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc------ceeeecc---cHHHHHHHc-----------------
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG------AAISFAP---NAWLALDAL-----------------   60 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~------~~~~~~~---~~~~~~~~~-----------------   60 (184)
                      ||+|||+|++||++|+.|++. .+|+|+-|.+...+.+      -+..+.+   ...+.-.-+                 
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            999999999999999999988 8999999987553211      1111211   011111110                 


Q ss_pred             ---CChHHHHhcCCCccceE-----EEecCCCce-eeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceE
Q 030042           61 ---GVSHKLASIYPPVNRIS-----VTNLGTGAT-QETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKI  128 (184)
Q Consensus        61 ---~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v  128 (184)
                         ...+++...+.++++-.     +........ ...+-.+          ..-..+...|.++.   ++++++.++.+
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~----------~TG~~I~~~L~~~v~~~p~I~v~e~~~a  157 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD----------ATGKEIMTALLKKVRNRPNITVLEGAEA  157 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC----------CccHHHHHHHHHHHhcCCCcEEEecchh
Confidence               11244444555544322     111111111 1111111          11245666676666   38999999999


Q ss_pred             EEEeccCCCCCcceEEEE--ecC--cEEEeeEEEecCCcchHH
Q 030042          129 AAIDSQTHDGSSPVFIHL--VDG--TIVKTKFLIGCDGIHSTV  167 (184)
Q Consensus       129 ~~~~~~~~~~~~~~~v~~--~~g--~~~~a~~vI~a~G~~s~~  167 (184)
                      .++..++  +.....+.+  .++  .++.++.||+|||+.+.+
T Consensus       158 ~~li~~~--~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~l  198 (518)
T COG0029         158 LDLIIED--GIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGL  198 (518)
T ss_pred             hhhhhcC--CceEeEEEEecCCCeEEEEecCeEEEecCCCccc
Confidence            9988876  222113443  322  578899999999987654

>PRK07208 hypothetical protein; Provisional

Probab=98.89  E-value=3.2e-09  Score=81.87  Aligned_cols=40  Identities=45%  Similarity=0.545  Sum_probs=37.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++.||+|||||++||++|+.|++.|++|+|+|+.+..++.
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~   42 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGI   42 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence            5789999999999999999999999999999999888764

>PRK07846 mycothione reductase; Reviewed

Probab=98.88  E-value=1.2e-08  Score=77.98  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=29.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      +||++||||||+|..+|..  +.|.+|+++|+. ..++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGt   36 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGT   36 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCc
Confidence            4899999999999998865  469999999985 34443

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.88  E-value=3.3e-09  Score=81.33  Aligned_cols=41  Identities=44%  Similarity=0.703  Sum_probs=37.5

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      +++.+|+|||||++||++|.+|.+.|++|+|+|.++..|+.
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR   53 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR   53 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence            45789999999999999999999999999999999988753

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.87  E-value=5e-08  Score=74.94  Aligned_cols=99  Identities=20%  Similarity=0.301  Sum_probs=72.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.....                                          
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  208 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG------------------------------------------  208 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC------------------------------------------
Confidence            47999999999999999999999999999987532100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGI  163 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~  163 (184)
                                 ....    ....+.+.+.+.  +++++.+++|++++..+   +. +.+.+.+|  +++.+|.||+|+|.
T Consensus       209 -----------~~~~----~~~~~~~~l~~~--gi~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~i~~D~vi~a~G~  267 (461)
T TIGR01350       209 -----------EDAE----VSKVVAKALKKK--GVKILTNTKVTAVEKND---DQ-VVYENKGGETETLTGEKVLVAVGR  267 (461)
T ss_pred             -----------CCHH----HHHHHHHHHHHc--CCEEEeCCEEEEEEEeC---CE-EEEEEeCCcEEEEEeCEEEEecCC
Confidence                       0000    012334444443  89999999999998654   33 66766666  47999999999998


Q ss_pred             chHH
Q 030042          164 HSTV  167 (184)
Q Consensus       164 ~s~~  167 (184)
                      .+..
T Consensus       268 ~p~~  271 (461)
T TIGR01350       268 KPNT  271 (461)
T ss_pred             cccC
Confidence            7643

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.87  E-value=5.1e-08  Score=74.92  Aligned_cols=98  Identities=23%  Similarity=0.372  Sum_probs=73.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++|+.+.+...                                          
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  213 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF------------------------------------------  213 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------------------------------
Confidence            47999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ..+.    ....+.+.+.+.  +++++.+++++++...+   +. +.+.+.+|+++.+|.||.|+|..+
T Consensus       214 -----------~d~~----~~~~l~~~l~~~--gI~v~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~D~vi~a~G~~p  272 (461)
T PRK05249        214 -----------LDDE----ISDALSYHLRDS--GVTIRHNEEVEKVEGGD---DG-VIVHLKSGKKIKADCLLYANGRTG  272 (461)
T ss_pred             -----------CCHH----HHHHHHHHHHHc--CCEEEECCEEEEEEEeC---Ce-EEEEECCCCEEEeCEEEEeecCCc
Confidence                       0000    012344444433  89999999999998654   33 667777788899999999999876


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       273 ~  273 (461)
T PRK05249        273 N  273 (461)
T ss_pred             c
Confidence            4

>TIGR03452 mycothione_red mycothione reductase

Probab=98.86  E-value=5e-08  Score=74.70  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=29.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++||++|||+|++|..+|.  +..|.+|+++|+. ..++.
T Consensus         1 ~~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~-~~GGt   37 (452)
T TIGR03452         1 RHYDLIIIGTGSGNSIPDP--RFADKRIAIVEKG-TFGGT   37 (452)
T ss_pred             CCcCEEEECCCHHHHHHHH--HHCCCeEEEEeCC-CCCCe
Confidence            3699999999999998865  4579999999984 34444

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.86  E-value=5.9e-09  Score=86.29  Aligned_cols=37  Identities=38%  Similarity=0.439  Sum_probs=33.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      ..+|+||||||+||++|+.|++.|++|+|||+.+.++
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G  466 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG  466 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence            4689999999999999999999999999999876654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.84  E-value=6.6e-08  Score=74.31  Aligned_cols=98  Identities=21%  Similarity=0.315  Sum_probs=71.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  210 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG------------------------------------------  210 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc------------------------------------------
Confidence            47999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC---cEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG---TIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g---~~~~a~~vI~a~G  162 (184)
                                 ..+.    ....+.+.|.+.  +++++.+++|++++..+   +. +.+.+.++   +++.+|.||.|+|
T Consensus       211 -----------~~~~----~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~---~~-v~v~~~~gg~~~~i~~D~vi~a~G  269 (462)
T PRK06416        211 -----------EDKE----ISKLAERALKKR--GIKIKTGAKAKKVEQTD---DG-VTVTLEDGGKEETLEADYVLVAVG  269 (462)
T ss_pred             -----------CCHH----HHHHHHHHHHHc--CCEEEeCCEEEEEEEeC---CE-EEEEEEeCCeeEEEEeCEEEEeeC
Confidence                       0000    012333444443  89999999999998764   33 66666655   6799999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ..+.
T Consensus       270 ~~p~  273 (462)
T PRK06416        270 RRPN  273 (462)
T ss_pred             CccC
Confidence            8654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.84  E-value=7.2e-09  Score=79.42  Aligned_cols=37  Identities=41%  Similarity=0.554  Sum_probs=33.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+..+
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~g  176 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG  176 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC
Confidence            4689999999999999999999999999999976543

>PRK07846 mycothione reductase; Reviewed

Probab=98.84  E-value=7.5e-08  Score=73.71  Aligned_cols=97  Identities=22%  Similarity=0.325  Sum_probs=70.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------------------------------  204 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------------------------------  204 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------------------------------
Confidence            48999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ....     ..+....+.+  .+++++.++++++++..+   .. +.+.+.+|+++.+|.||.|+|..+
T Consensus       205 -----------~d~~-----~~~~l~~l~~--~~v~i~~~~~v~~i~~~~---~~-v~v~~~~g~~i~~D~vl~a~G~~p  262 (451)
T PRK07846        205 -----------LDDD-----ISERFTELAS--KRWDVRLGRNVVGVSQDG---SG-VTLRLDDGSTVEADVLLVATGRVP  262 (451)
T ss_pred             -----------cCHH-----HHHHHHHHHh--cCeEEEeCCEEEEEEEcC---CE-EEEEECCCcEeecCEEEEEECCcc
Confidence                       0000     0111122222  278899999999998654   34 667777888899999999999866


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       263 n  263 (451)
T PRK07846        263 N  263 (451)
T ss_pred             C
Confidence            4

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.83  E-value=9e-08  Score=72.71  Aligned_cols=98  Identities=24%  Similarity=0.395  Sum_probs=73.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      ..++|||||+.|+-+|..+++.|.+|+|+|+.+..-..                                      .+  
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~--------------------------------------~D--  213 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG--------------------------------------ED--  213 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc--------------------------------------CC--
Confidence            36999999999999999999999999999998754111                                      00  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCc--EEEeeEEEecCCc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT--IVKTKFLIGCDGI  163 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~--~~~a~~vI~a~G~  163 (184)
                                   ++.    ...+.+.|.+  .+++++.+++++.++..+   +. +.+.+++|+  ++++|.|+.|+|.
T Consensus       214 -------------~ei----~~~~~~~l~~--~gv~i~~~~~v~~~~~~~---~~-v~v~~~~g~~~~~~ad~vLvAiGR  270 (454)
T COG1249         214 -------------PEI----SKELTKQLEK--GGVKILLNTKVTAVEKKD---DG-VLVTLEDGEGGTIEADAVLVAIGR  270 (454)
T ss_pred             -------------HHH----HHHHHHHHHh--CCeEEEccceEEEEEecC---Ce-EEEEEecCCCCEEEeeEEEEccCC
Confidence                         000    1234444444  378999999999998876   44 777777765  7889999999998


Q ss_pred             chH
Q 030042          164 HST  166 (184)
Q Consensus       164 ~s~  166 (184)
                      ...
T Consensus       271 ~Pn  273 (454)
T COG1249         271 KPN  273 (454)
T ss_pred             ccC
Confidence            654

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.82  E-value=1.1e-08  Score=74.86  Aligned_cols=152  Identities=17%  Similarity=0.220  Sum_probs=87.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCC---ccce
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPP---VNRI   76 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   76 (184)
                      |.+..+|++.||-||+.|.+|..|..++ .+++.+||.+.+.... ++.+...+++.-    ...++...-.|   +..+
T Consensus         1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHp-GmllegstlQv~----FlkDLVTl~~PTs~ySFL   75 (436)
T COG3486           1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHP-GMLLEGSTLQVP----FLKDLVTLVDPTSPYSFL   75 (436)
T ss_pred             CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCC-CcccCCcccccc----chhhhccccCCCCchHHH
Confidence            4557899999999999999999998875 6899999998764332 122222111110    01111111111   1122


Q ss_pred             EEEecCCCceeeeecCCCCCCCCCCeeeeHHH---HHHHHHhhCCCCeeeeCceEEEEeccCCCCCc-ceEEEEecCcEE
Q 030042           77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKK---LLQTLADELPNGTIHFSSKIAAIDSQTHDGSS-PVFIHLVDGTIV  152 (184)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~-~~~v~~~~g~~~  152 (184)
                      .+...++   .-..|..     .+...+.|.+   +++|....+  -.++|+++|++|...+. +.. ...+.+.++..+
T Consensus        76 NYL~~h~---RLy~Fl~-----~e~f~i~R~Ey~dY~~Waa~~l--~~~rfg~~V~~i~~~~~-d~~~~~~~~t~~~~~y  144 (436)
T COG3486          76 NYLHEHG---RLYEFLN-----YETFHIPRREYNDYCQWAASQL--PSLRFGEEVTDISSLDG-DAVVRLFVVTANGTVY  144 (436)
T ss_pred             HHHHHcc---hHhhhhh-----hhcccccHHHHHHHHHHHHhhC--CccccCCeeccccccCC-cceeEEEEEcCCCcEE
Confidence            2222111   1111111     1333455555   445555554  46788999998744331 122 233778888899


Q ss_pred             EeeEEEecCCcchHHH
Q 030042          153 KTKFLIGCDGIHSTVA  168 (184)
Q Consensus       153 ~a~~vI~a~G~~s~~~  168 (184)
                      .|+.||+++|....+.
T Consensus       145 ~ar~lVlg~G~~P~IP  160 (436)
T COG3486         145 RARNLVLGVGTQPYIP  160 (436)
T ss_pred             EeeeEEEccCCCcCCC
Confidence            9999999999876543

>PRK06116 glutathione reductase; Validated

Probab=98.79  E-value=1.1e-07  Score=72.80  Aligned_cols=99  Identities=22%  Similarity=0.306  Sum_probs=73.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  205 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG------------------------------------------  205 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc------------------------------------------
Confidence            47999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ..+.    -...+.+.|.+.  +++++.+++|.+++..++  .. +.+.+.+|+++.+|.||.|+|...
T Consensus       206 -----------~~~~----~~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~--g~-~~v~~~~g~~i~~D~Vv~a~G~~p  265 (450)
T PRK06116        206 -----------FDPD----IRETLVEEMEKK--GIRLHTNAVPKAVEKNAD--GS-LTLTLEDGETLTVDCLIWAIGREP  265 (450)
T ss_pred             -----------cCHH----HHHHHHHHHHHC--CcEEECCCEEEEEEEcCC--ce-EEEEEcCCcEEEeCEEEEeeCCCc
Confidence                       0000    012344444443  899999999999987541  22 567777888899999999999865


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       266 ~  266 (450)
T PRK06116        266 N  266 (450)
T ss_pred             C
Confidence            4

>PLN02576 protoporphyrinogen oxidase

Probab=98.78  E-value=1.2e-08  Score=79.03  Aligned_cols=40  Identities=48%  Similarity=0.718  Sum_probs=36.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~~~~~   43 (184)
                      .++||+|||||++||++|+.|++. |.+|+|+|+.+..++.
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr   51 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN   51 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence            467999999999999999999999 9999999999988765

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.76  E-value=1.4e-07  Score=76.69  Aligned_cols=106  Identities=24%  Similarity=0.384  Sum_probs=75.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+|+|+.+.+...               .                          
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------------~--------------------------  179 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------------Q--------------------------  179 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------------h--------------------------
Confidence            47999999999999999999999999999986432000               0                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ...    .....+.+.+.+.  |++++.++.++++...+   .. ..|.+.+|+++.+|.||.|+|...
T Consensus       180 -----------ld~----~~~~~l~~~l~~~--GV~v~~~~~v~~i~~~~---~~-~~v~~~dG~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       180 -----------LDQ----TAGRLLQRELEQK--GLTFLLEKDTVEIVGAT---KA-DRIRFKDGSSLEADLIVMAAGIRP  238 (785)
T ss_pred             -----------cCH----HHHHHHHHHHHHc--CCEEEeCCceEEEEcCC---ce-EEEEECCCCEEEcCEEEECCCCCc
Confidence                       000    0012344444444  89999999999887543   33 567788999999999999999764


Q ss_pred             --HHHhhhCC
Q 030042          166 --TVAWWLGL  173 (184)
Q Consensus       166 --~~~~~~~~  173 (184)
                        .+.+.+++
T Consensus       239 n~~la~~~gl  248 (785)
T TIGR02374       239 NDELAVSAGI  248 (785)
T ss_pred             CcHHHHhcCC
Confidence              34554544

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.76  E-value=2e-07  Score=71.23  Aligned_cols=97  Identities=16%  Similarity=0.237  Sum_probs=69.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.+...                                          
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  195 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR------------------------------------------  195 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC------------------------------------------
Confidence            47999999999999999999999999999997542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ..+.    -...+.+.+.+.  +++++.+++|++++..+   .. +.+. .+++++.+|.||+|+|...
T Consensus       196 -----------~~~~----~~~~~~~~l~~~--GI~i~~~~~V~~i~~~~---~~-v~v~-~~g~~i~~D~viva~G~~p  253 (438)
T PRK07251        196 -----------EEPS----VAALAKQYMEED--GITFLLNAHTTEVKNDG---DQ-VLVV-TEDETYRFDALLYATGRKP  253 (438)
T ss_pred             -----------CCHH----HHHHHHHHHHHc--CCEEEcCCEEEEEEecC---CE-EEEE-ECCeEEEcCEEEEeeCCCC
Confidence                       0000    012233334433  89999999999998653   33 4444 3566899999999999865


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       254 ~  254 (438)
T PRK07251        254 N  254 (438)
T ss_pred             C
Confidence            4

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.75  E-value=3.6e-08  Score=73.13  Aligned_cols=37  Identities=49%  Similarity=0.473  Sum_probs=33.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      ..+|+|||+|++|+.+|..|++.|.+|+++|+.+.++
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g   54 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG   54 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            3599999999999999999999999999999977653

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.75  E-value=1.9e-07  Score=71.42  Aligned_cols=98  Identities=16%  Similarity=0.277  Sum_probs=71.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------  204 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------------------------------  204 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------------------------------
Confidence            46999999999999999999999999999986532000                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                           +.      ..    -+..+.+.|.+.  +++++.++++.++...+   +. +.+.+.+|+++.+|.||.|+|...
T Consensus       205 -----~d------~~----~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~D~viva~G~~p  263 (446)
T TIGR01424       205 -----FD------DD----MRALLARNMEGR--GIRIHPQTSLTSITKTD---DG-LKVTLSHGEEIVADVVLFATGRSP  263 (446)
T ss_pred             -----cC------HH----HHHHHHHHHHHC--CCEEEeCCEEEEEEEcC---Ce-EEEEEcCCcEeecCEEEEeeCCCc
Confidence                 00      00    012333444433  89999999999998654   33 667777888899999999999865


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       264 n  264 (446)
T TIGR01424       264 N  264 (446)
T ss_pred             C
Confidence            4

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03452 mycothione_red mycothione reductase

Probab=98.75  E-value=2.3e-07  Score=71.15  Aligned_cols=97  Identities=20%  Similarity=0.344  Sum_probs=69.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++++.+.+...     +                                 +  
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-----~---------------------------------d--  209 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-----L---------------------------------D--  209 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-----c---------------------------------C--
Confidence            47999999999999999999999999999986432000     0                                 0  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                   ...    ...+.+ +.+  .+++++.+++|++++..+   .. +.+.+.+|+++.+|.|+.|+|...
T Consensus       210 -------------~~~----~~~l~~-~~~--~gI~i~~~~~V~~i~~~~---~~-v~v~~~~g~~i~~D~vl~a~G~~p  265 (452)
T TIGR03452       210 -------------EDI----SDRFTE-IAK--KKWDIRLGRNVTAVEQDG---DG-VTLTLDDGSTVTADVLLVATGRVP  265 (452)
T ss_pred             -------------HHH----HHHHHH-HHh--cCCEEEeCCEEEEEEEcC---Ce-EEEEEcCCCEEEcCEEEEeeccCc
Confidence                         000    112222 222  278899999999998654   33 667777788899999999999765


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       266 n  266 (452)
T TIGR03452       266 N  266 (452)
T ss_pred             C
Confidence            3

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.74  E-value=9.9e-08  Score=71.04  Aligned_cols=106  Identities=23%  Similarity=0.261  Sum_probs=68.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      .+..++|||||.+|+.+|..|.+..  .+|+++|+.+.....                    +.+.+.-           
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~--------------------plL~eva-----------   50 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFT--------------------PLLYEVA-----------   50 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccc--------------------hhhhhhh-----------
Confidence            3568999999999999999999875  889999998753211                    0000000           


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI  158 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI  158 (184)
                                         ...++..++.--+.+.+.   ++++.. .+|++|+.++      -.|.+++++.+.+|++|
T Consensus        51 -------------------~g~l~~~~i~~p~~~~~~~~~~v~~~~-~~V~~ID~~~------k~V~~~~~~~i~YD~LV  104 (405)
T COG1252          51 -------------------TGTLSESEIAIPLRALLRKSGNVQFVQ-GEVTDIDRDA------KKVTLADLGEISYDYLV  104 (405)
T ss_pred             -------------------cCCCChhheeccHHHHhcccCceEEEE-EEEEEEcccC------CEEEeCCCccccccEEE
Confidence                               001111121111222221   355544 5899999886      55777777789999999


Q ss_pred             ecCCcchH
Q 030042          159 GCDGIHST  166 (184)
Q Consensus       159 ~a~G~~s~  166 (184)
                      +|.|+...
T Consensus       105 valGs~~~  112 (405)
T COG1252         105 VALGSETN  112 (405)
T ss_pred             EecCCcCC
Confidence            99998653

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.74  E-value=1.5e-07  Score=71.62  Aligned_cols=96  Identities=20%  Similarity=0.358  Sum_probs=68.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++++.+.....                                       .  
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~---------------------------------------~--  176 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK---------------------------------------L--  176 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc---------------------------------------c--
Confidence            47999999999999999999999999999986532000                                       0  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ....    -...+.+.+.+.  |+++++++++.++..++   .  + +.+.+|+++.+|.||.|+|...
T Consensus       177 -----------~~~~----~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~---~--~-v~~~~g~~i~~D~vi~a~G~~p  233 (427)
T TIGR03385       177 -----------FDEE----MNQIVEEELKKH--EINLRLNEEVDSIEGEE---R--V-KVFTSGGVYQADMVILATGIKP  233 (427)
T ss_pred             -----------cCHH----HHHHHHHHHHHc--CCEEEeCCEEEEEecCC---C--E-EEEcCCCEEEeCEEEECCCccC
Confidence                       0000    012233344333  89999999999997643   1  3 4556788899999999999864

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.74  E-value=9.7e-08  Score=68.77  Aligned_cols=39  Identities=31%  Similarity=0.572  Sum_probs=34.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      .-+|+|||+|++||++|+.|+++- +|+++|.+...++..
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~rh-dVTLfEA~~rlGGha   46 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRRH-DVTLFEADRRLGGHA   46 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhccc-ceEEEeccccccCcc
Confidence            468999999999999999998764 999999998876644

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.74  E-value=2.8e-08  Score=76.17  Aligned_cols=59  Identities=41%  Similarity=0.527  Sum_probs=46.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcccee----------------eecccHHHHHHHcCChHH
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI----------------SFAPNAWLALDALGVSHK   65 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~   65 (184)
                      +|+|||||++||++|+.|++.|.+|+|+|+.+.+++..++.                ...+...++++++|+.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   75 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR   75 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence            58999999999999999999999999999998877643221                123567888888887543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=3.1e-08  Score=74.02  Aligned_cols=144  Identities=28%  Similarity=0.311  Sum_probs=85.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC----------CCCCccceeeecccHHHHHHHcCChHHHHhcCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD----------GLRGTGAAISFAPNAWLALDALGVSHKLASIYPPV   73 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (184)
                      ..|||+|||||-+|.-+|...+|.|.+.+++-++-          .+++.|.|+.+..  ...|.  |+...+-+..   
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrE--VDALd--Gl~~rvcD~s---   99 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMRE--VDALD--GLCSRVCDQS---   99 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeee--ehhhc--chHhhhhhhh---
Confidence            46899999999999999999999999999987653          3345555544322  00110  1111111111   


Q ss_pred             cceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCC-C-CcceEEEEec
Q 030042           74 NRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHD-G-SSPVFIHLVD  148 (184)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~-~-~~~~~v~~~~  148 (184)
                       .+.+.-       ..+-.+...||+- .++++..+.+.+.+...   +..|+.+ .|.++...+.+ + ..+..|.+.|
T Consensus       100 -~vq~k~-------LNrs~GPAVwg~R-AQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~d  169 (679)
T KOG2311|consen  100 -GVQYKV-------LNRSKGPAVWGLR-AQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVD  169 (679)
T ss_pred             -hhhHHH-------hhccCCCcccChH-HhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEec
Confidence             111000       0001122234442 25677777777776653   5556544 66676654321 1 1146678899


Q ss_pred             CcEEEeeEEEecCCcc
Q 030042          149 GTIVKTKFLIGCDGIH  164 (184)
Q Consensus       149 g~~~~a~~vI~a~G~~  164 (184)
                      |..+.|+-||+.||-+
T Consensus       170 gt~v~a~~VilTTGTF  185 (679)
T KOG2311|consen  170 GTVVYAESVILTTGTF  185 (679)
T ss_pred             CcEeccceEEEeeccc
Confidence            9999999999999965

>PLN02507 glutathione reductase

Probab=98.74  E-value=2.2e-07  Score=72.00  Aligned_cols=98  Identities=11%  Similarity=0.165  Sum_probs=72.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------  241 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG------------------------------------------  241 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc------------------------------------------
Confidence            47999999999999999999999999999986532100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                           +.      ..    -...+.+.|.+.  +++++.+++|.+++..+   +. +.+.+.+|+++.+|.|+.|+|...
T Consensus       242 -----~d------~~----~~~~l~~~l~~~--GI~i~~~~~V~~i~~~~---~~-~~v~~~~g~~i~~D~vl~a~G~~p  300 (499)
T PLN02507        242 -----FD------DE----MRAVVARNLEGR--GINLHPRTNLTQLTKTE---GG-IKVITDHGEEFVADVVLFATGRAP  300 (499)
T ss_pred             -----cC------HH----HHHHHHHHHHhC--CCEEEeCCEEEEEEEeC---Ce-EEEEECCCcEEEcCEEEEeecCCC
Confidence                 00      00    012344444443  89999999999998654   33 667777888899999999999765


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       301 n  301 (499)
T PLN02507        301 N  301 (499)
T ss_pred             C
Confidence            4

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.74  E-value=1.8e-08  Score=77.98  Aligned_cols=38  Identities=42%  Similarity=0.592  Sum_probs=35.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .||+|||||++||++|..|++.|++|+|+|+++.+++.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~   39 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGC   39 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence            58999999999999999999999999999999888653

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.73  E-value=3e-07  Score=70.94  Aligned_cols=101  Identities=22%  Similarity=0.329  Sum_probs=69.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.+...                                          
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~------------------------------------------  218 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT------------------------------------------  218 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc------------------------------------------
Confidence            47999999999999999999999999999987542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGI  163 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~  163 (184)
                                 .  ..  --...+.+.|.+.  +++++.+++|+++....+ +.. ..+.+.+|  +++.+|.||.|+|.
T Consensus       219 -----------~--~~--~~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~-~~~-~~~~~~~g~~~~i~~D~vi~a~G~  279 (472)
T PRK05976        219 -----------E--DA--ELSKEVARLLKKL--GVRVVTGAKVLGLTLKKD-GGV-LIVAEHNGEEKTLEADKVLVSVGR  279 (472)
T ss_pred             -----------C--CH--HHHHHHHHHHHhc--CCEEEeCcEEEEEEEecC-CCE-EEEEEeCCceEEEEeCEEEEeeCC
Confidence                       0  00  0012333444433  899999999999975211 122 33445566  36899999999998


Q ss_pred             chHH
Q 030042          164 HSTV  167 (184)
Q Consensus       164 ~s~~  167 (184)
                      ....
T Consensus       280 ~p~~  283 (472)
T PRK05976        280 RPNT  283 (472)
T ss_pred             ccCC
Confidence            6543

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.72  E-value=2.7e-07  Score=70.72  Aligned_cols=99  Identities=24%  Similarity=0.334  Sum_probs=72.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      -+++|||||.+|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------------------------------  204 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------------------------------  204 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------------------------------
Confidence            47999999999999999999999999999987543100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeEEEecCCcc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKFLIGCDGIH  164 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~vI~a~G~~  164 (184)
                           +        +.  --...+.+.|.+.  +++++.+++++++..++  +.. ..+.+.+| +.+.+|.||.|+|..
T Consensus       205 -----~--------d~--~~~~~~~~~l~~~--gI~i~~~~~v~~i~~~~--~~~-~~v~~~~g~~~i~~D~vi~a~G~~  264 (450)
T TIGR01421       205 -----F--------DS--MISETITEEYEKE--GINVHKLSKPVKVEKTV--EGK-LVIHFEDGKSIDDVDELIWAIGRK  264 (450)
T ss_pred             -----c--------CH--HHHHHHHHHHHHc--CCEEEcCCEEEEEEEeC--Cce-EEEEECCCcEEEEcCEEEEeeCCC
Confidence                 0        00  0013344444443  89999999999998653  122 55666677 579999999999986


Q ss_pred             hH
Q 030042          165 ST  166 (184)
Q Consensus       165 s~  166 (184)
                      ..
T Consensus       265 pn  266 (450)
T TIGR01421       265 PN  266 (450)
T ss_pred             cC
Confidence            64

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.72  E-value=1.8e-07  Score=69.92  Aligned_cols=38  Identities=53%  Similarity=0.764  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~~~~   42 (184)
                      ...|+|||+|++|+++|..|.+.|. +++|+|..++.|+
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG   59 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG   59 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence            4689999999999999999997765 8999999887754

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.72  E-value=3e-07  Score=70.78  Aligned_cols=98  Identities=24%  Similarity=0.346  Sum_probs=69.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++|+.+.....                                          
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------------------------------  210 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN------------------------------------------  210 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------------------------------
Confidence            47999999999999999999999999999986532100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe--cC--cEEEeeEEEecC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV--DG--TIVKTKFLIGCD  161 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~--~g--~~~~a~~vI~a~  161 (184)
                                 ....    -...+.+.|.+.  +++++.+++|+++...+   .. +.+.+.  +|  +++.+|.||.|+
T Consensus       211 -----------~d~~----~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~~~g~~~~i~~D~vi~a~  269 (466)
T PRK07818        211 -----------EDAE----VSKEIAKQYKKL--GVKILTGTKVESIDDNG---SK-VTVTVSKKDGKAQELEADKVLQAI  269 (466)
T ss_pred             -----------cCHH----HHHHHHHHHHHC--CCEEEECCEEEEEEEeC---Ce-EEEEEEecCCCeEEEEeCEEEECc
Confidence                       0000    012344444443  89999999999998653   33 444443  56  479999999999


Q ss_pred             CcchH
Q 030042          162 GIHST  166 (184)
Q Consensus       162 G~~s~  166 (184)
                      |....
T Consensus       270 G~~pn  274 (466)
T PRK07818        270 GFAPR  274 (466)
T ss_pred             CcccC
Confidence            97654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.72  E-value=2.6e-07  Score=71.10  Aligned_cols=98  Identities=19%  Similarity=0.298  Sum_probs=72.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  215 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG------------------------------------------  215 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC------------------------------------------
Confidence            37999999999999999999999999999986542110                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 .  .  .-....+.+.|.+.  +++++.++++++++..+   +. +.+.+.+|+++.+|.|+.|+|...
T Consensus       216 -----------~--d--~~~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~---~~-~~v~~~~g~~l~~D~vl~a~G~~p  274 (466)
T PRK07845        216 -----------E--D--ADAAEVLEEVFARR--GMTVLKRSRAESVERTG---DG-VVVTLTDGRTVEGSHALMAVGSVP  274 (466)
T ss_pred             -----------C--C--HHHHHHHHHHHHHC--CcEEEcCCEEEEEEEeC---CE-EEEEECCCcEEEecEEEEeecCCc
Confidence                       0  0  00012344444444  89999999999997654   33 667777888899999999999865


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       275 n  275 (466)
T PRK07845        275 N  275 (466)
T ss_pred             C
Confidence            4

>TIGR02053 MerA mercuric reductase

Probab=98.72  E-value=3.1e-07  Score=70.70  Aligned_cols=98  Identities=23%  Similarity=0.332  Sum_probs=69.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  204 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR------------------------------------------  204 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc------------------------------------------
Confidence            47999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cCcEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DGTIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g~~~~a~~vI~a~G  162 (184)
                                 ..+.    ....+.+.+.+.  +++++.+++|++++.++   +. +.+.+.   +++++.+|.||+|+|
T Consensus       205 -----------~d~~----~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~---~~-~~v~~~~~~~~~~i~~D~ViiA~G  263 (463)
T TIGR02053       205 -----------EEPE----ISAAVEEALAEE--GIEVVTSAQVKAVSVRG---GG-KIITVEKPGGQGEVEADELLVATG  263 (463)
T ss_pred             -----------cCHH----HHHHHHHHHHHc--CCEEEcCcEEEEEEEcC---CE-EEEEEEeCCCceEEEeCEEEEeEC
Confidence                       0000    012334444433  89999999999998754   33 444443   236899999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ..+.
T Consensus       264 ~~p~  267 (463)
T TIGR02053       264 RRPN  267 (463)
T ss_pred             CCcC
Confidence            7654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.71  E-value=2.2e-08  Score=74.41  Aligned_cols=37  Identities=38%  Similarity=0.615  Sum_probs=33.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      +|++|||||++|+++|+.|++.|.+|+|+|+++..++
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG   38 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG   38 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            6999999999999999999999999999999775554

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.71  E-value=1.3e-07  Score=66.53  Aligned_cols=155  Identities=17%  Similarity=0.226  Sum_probs=84.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC------CCeEEEeccCCCCC-ccceeee-------------cccHHHHHHHcCChHH
Q 030042            6 KDVVIIGAGIAGLATALALKRLG------VEPLVLEKSDGLRG-TGAAISF-------------APNAWLALDALGVSHK   65 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g------~~v~vie~~~~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~   65 (184)
                      .+|+|||||+.|.++||+|++++      ..|++||...-.++ +|.+.++             .+-+.++.+++  .++
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~L--sde   88 (380)
T KOG2852|consen   11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEEL--SDE   88 (380)
T ss_pred             eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHH--HHh
Confidence            68999999999999999999987      68999998765433 2222221             11112222221  222


Q ss_pred             HHhc---C-CCccceEEE-ecCCCce----eeeecCCC------CCCCC--CCeeeeHHHHHHHHHhhCC---CCeeeeC
Q 030042           66 LASI---Y-PPVNRISVT-NLGTGAT----QETSLTGK------FGDGS--GPRFIHRKKLLQTLADELP---NGTIHFS  125 (184)
Q Consensus        66 ~~~~---~-~~~~~~~~~-~~~~~~~----~~~~~~~~------~~~~~--~~~~~~~~~l~~~l~~~~~---~~~i~~~  125 (184)
                      +...   . .....+... .+.+..+    ..++|...      ...|.  ...++++..+...+.+.+.   ++++.++
T Consensus        89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G  168 (380)
T KOG2852|consen   89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG  168 (380)
T ss_pred             hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe
Confidence            2111   0 001111110 0011111    11111111      01222  4568899999999888874   5888887


Q ss_pred             ceEEEEeccCCCCCcceEEEEe---c-CcEEEeeEEEecCCcchH
Q 030042          126 SKIAAIDSQTHDGSSPVFIHLV---D-GTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       126 ~~v~~~~~~~~~~~~~~~v~~~---~-g~~~~a~~vI~a~G~~s~  166 (184)
                       +|.++....  .+. ..+..+   + ......+.+|++.|.|+.
T Consensus       169 -kv~ev~dEk--~r~-n~v~~ae~~~ti~~~d~~~ivvsaGPWTs  209 (380)
T KOG2852|consen  169 -KVKEVSDEK--HRI-NSVPKAEAEDTIIKADVHKIVVSAGPWTS  209 (380)
T ss_pred             -eeEEeeccc--ccc-cccchhhhcCceEEeeeeEEEEecCCCch
Confidence             666775221  121 112111   2 356779999999999873

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.70  E-value=3.9e-07  Score=69.99  Aligned_cols=99  Identities=18%  Similarity=0.298  Sum_probs=69.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~------------------------------------------  208 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG------------------------------------------  208 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc------------------------------------------
Confidence            47999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeEEEecCCcc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKFLIGCDGIH  164 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~vI~a~G~~  164 (184)
                                 ..+.    -...+.+.|.+.  +++++.++++++++..+   .. +.+...+. +++.+|.||.|+|..
T Consensus       209 -----------~d~e----~~~~l~~~L~~~--GI~i~~~~~V~~i~~~~---~~-v~~~~~g~~~~i~~D~vivA~G~~  267 (458)
T PRK06912        209 -----------EDED----IAHILREKLEND--GVKIFTGAALKGLNSYK---KQ-ALFEYEGSIQEVNAEFVLVSVGRK  267 (458)
T ss_pred             -----------ccHH----HHHHHHHHHHHC--CCEEEECCEEEEEEEcC---CE-EEEEECCceEEEEeCEEEEecCCc
Confidence                       0000    012344444443  89999999999997654   22 44443222 368999999999987


Q ss_pred             hHH
Q 030042          165 STV  167 (184)
Q Consensus       165 s~~  167 (184)
                      +.+
T Consensus       268 p~~  270 (458)
T PRK06912        268 PRV  270 (458)
T ss_pred             cCC
Confidence            653

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.70  E-value=7.2e-07  Score=64.29  Aligned_cols=39  Identities=33%  Similarity=0.575  Sum_probs=34.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |.+..+||+|||+|.+||.+|.+|+..|.+|+|+|+...
T Consensus         1 ~d~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           1 SDGLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             CCcccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            345689999999999999999999999999999998654

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.69  E-value=1.9e-08  Score=76.32  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=40.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcccee
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI   47 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~   47 (184)
                      ++|||+|||+|.+|+.+|..|++.|.+|+++|+++..|+..++.
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~   46 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL   46 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence            57999999999999999999999999999999999888766544

>PRK06370 mercuric reductase; Validated

Probab=98.69  E-value=4.7e-07  Score=69.67  Aligned_cols=98  Identities=18%  Similarity=0.301  Sum_probs=68.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR------------------------------------------  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc------------------------------------------
Confidence            47999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE--e-cCcEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL--V-DGTIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~-~g~~~~a~~vI~a~G  162 (184)
                                 ....    ....+.+.|.+.  +++++++++|.+++..+   +. ..+..  . ++.++.+|.||.|+|
T Consensus       210 -----------~~~~----~~~~l~~~l~~~--GV~i~~~~~V~~i~~~~---~~-~~v~~~~~~~~~~i~~D~Vi~A~G  268 (463)
T PRK06370        210 -----------EDED----VAAAVREILERE--GIDVRLNAECIRVERDG---DG-IAVGLDCNGGAPEITGSHILVAVG  268 (463)
T ss_pred             -----------cCHH----HHHHHHHHHHhC--CCEEEeCCEEEEEEEcC---CE-EEEEEEeCCCceEEEeCEEEECcC
Confidence                       0000    012333444333  89999999999998764   22 33333  2 345799999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ....
T Consensus       269 ~~pn  272 (463)
T PRK06370        269 RVPN  272 (463)
T ss_pred             CCcC
Confidence            7654

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.67  E-value=3.4e-07  Score=74.85  Aligned_cols=109  Identities=26%  Similarity=0.335  Sum_probs=76.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      ..++|||||+.|+-+|..|++.|.+|+|+|+.+.....                     .                    
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~---------------------~--------------------  184 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE---------------------Q--------------------  184 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh---------------------h--------------------
Confidence            36999999999999999999999999999986532000                     0                    


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ....    ....+.+.|.+.  |++++.++.++++...++ ... ..+.+.+|+.+.+|.||.|+|...
T Consensus       185 -----------ld~~----~~~~l~~~L~~~--GV~v~~~~~v~~I~~~~~-~~~-~~v~~~dG~~i~~D~Vv~A~G~rP  245 (847)
T PRK14989        185 -----------LDQM----GGEQLRRKIESM--GVRVHTSKNTLEIVQEGV-EAR-KTMRFADGSELEVDFIVFSTGIRP  245 (847)
T ss_pred             -----------cCHH----HHHHHHHHHHHC--CCEEEcCCeEEEEEecCC-Cce-EEEEECCCCEEEcCEEEECCCccc
Confidence                       0000    012344445444  899999999999976431 122 567788999999999999999755


Q ss_pred             H--HHhhhCCC
Q 030042          166 T--VAWWLGLS  174 (184)
Q Consensus       166 ~--~~~~~~~~  174 (184)
                      .  +.+..++.
T Consensus       246 n~~L~~~~Gl~  256 (847)
T PRK14989        246 QDKLATQCGLA  256 (847)
T ss_pred             CchHHhhcCcc
Confidence            3  45555543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.67  E-value=5.2e-07  Score=69.63  Aligned_cols=98  Identities=26%  Similarity=0.368  Sum_probs=69.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|.+|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  221 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------------------------------------------  221 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------------------------------------------
Confidence            48999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec--C--cEEEeeEEEecC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD--G--TIVKTKFLIGCD  161 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~--g--~~~~a~~vI~a~  161 (184)
                                 ....    -...+.+.|.+.  +++++.+++|+++...+   .. +.+...+  |  +.+.+|.|++|+
T Consensus       222 -----------~d~~----~~~~~~~~l~~~--gi~i~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~~i~~D~vl~a~  280 (475)
T PRK06327        222 -----------ADEQ----VAKEAAKAFTKQ--GLDIHLGVKIGEIKTGG---KG-VSVAYTDADGEAQTLEVDKLIVSI  280 (475)
T ss_pred             -----------CCHH----HHHHHHHHHHHc--CcEEEeCcEEEEEEEcC---CE-EEEEEEeCCCceeEEEcCEEEEcc
Confidence                       0000    012333444433  89999999999998664   33 4455433  3  478999999999


Q ss_pred             CcchH
Q 030042          162 GIHST  166 (184)
Q Consensus       162 G~~s~  166 (184)
                      |..+.
T Consensus       281 G~~p~  285 (475)
T PRK06327        281 GRVPN  285 (475)
T ss_pred             CCccC
Confidence            97654

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.66  E-value=2.4e-07  Score=72.22  Aligned_cols=75  Identities=15%  Similarity=0.221  Sum_probs=56.4

Q ss_pred             eeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEecCCcch-HHHhhhCC
Q 030042          102 RFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGCDGIHS-TVAWWLGL  173 (184)
Q Consensus       102 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a~G~~s-~~~~~~~~  173 (184)
                      .++++..+...+.+.+.  |++++.+++|+++...+  +.. +.|.+.   +|  ..+.|+.||+|+|.|+ .+.++++.
T Consensus       123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v-~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~  199 (516)
T TIGR03377       123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG--GRV-TGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL  199 (516)
T ss_pred             cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEE-EEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence            46788888888877774  89999999999998765  232 444442   34  3789999999999998 47777777


Q ss_pred             CCCccc
Q 030042          174 SEPLNV  179 (184)
Q Consensus       174 ~~~~~~  179 (184)
                      +.|..+
T Consensus       200 ~~~i~p  205 (516)
T TIGR03377       200 DIRMFP  205 (516)
T ss_pred             CCceec
Confidence            666544

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.65  E-value=6.2e-07  Score=69.04  Aligned_cols=98  Identities=22%  Similarity=0.354  Sum_probs=68.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++|+.+.....                                          
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~------------------------------------------  212 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG------------------------------------------  212 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC------------------------------------------
Confidence            47999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---c--CcEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---D--GTIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~--g~~~~a~~vI~a  160 (184)
                                   .+.  -....+.+.|.+.  +++++.+++|++++..+   +. +.+...   +  ++.+.+|.|+.|
T Consensus       213 -------------~d~--~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~---~~-v~v~~~~~~~g~~~~i~~D~vi~a  271 (466)
T PRK06115        213 -------------TDT--ETAKTLQKALTKQ--GMKFKLGSKVTGATAGA---DG-VSLTLEPAAGGAAETLQADYVLVA  271 (466)
T ss_pred             -------------CCH--HHHHHHHHHHHhc--CCEEEECcEEEEEEEcC---Ce-EEEEEEEcCCCceeEEEeCEEEEc
Confidence                         000  0012344444443  89999999999998654   23 444332   2  357999999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      +|..+.
T Consensus       272 ~G~~pn  277 (466)
T PRK06115        272 IGRRPY  277 (466)
T ss_pred             cCCccc
Confidence            998653

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.65  E-value=7e-08  Score=74.28  Aligned_cols=60  Identities=30%  Similarity=0.433  Sum_probs=46.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcccee----------------eecccHHHHHHHcCChHHH
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI----------------SFAPNAWLALDALGVSHKL   66 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~   66 (184)
                      +|+|||||++|+++|+.|++.|++|+|+|+.+..++..++.                ...+...+.++++|+.+.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~   76 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL   76 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence            58999999999999999999999999999998876532221                0134567777888876544

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=4.6e-08  Score=73.83  Aligned_cols=40  Identities=43%  Similarity=0.574  Sum_probs=36.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccce
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA   46 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~   46 (184)
                      +|+|+|||++||++|++|+.+|++|+|+|+++..|+.-++
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s   41 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS   41 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence            7999999999999999999999999999999998876544

>PRK14727 putative mercuric reductase; Provisional

Probab=98.64  E-value=5.8e-07  Score=69.45  Aligned_cols=96  Identities=17%  Similarity=0.226  Sum_probs=68.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      -+++|||+|+.|+-+|..|++.|.+|+++++..... .     +                                 +  
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~-~-----~---------------------------------d--  227 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF-R-----E---------------------------------D--  227 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC-c-----c---------------------------------h--
Confidence            479999999999999999999999999998742100 0     0                                 0  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                   +.    ....+.+.|.+.  +++++.+++++++...+   +. +.+.+.++ ++.+|.||.|+|..+
T Consensus       228 -------------~~----~~~~l~~~L~~~--GV~i~~~~~V~~i~~~~---~~-~~v~~~~g-~i~aD~VlvA~G~~p  283 (479)
T PRK14727        228 -------------PL----LGETLTACFEKE--GIEVLNNTQASLVEHDD---NG-FVLTTGHG-ELRAEKLLISTGRHA  283 (479)
T ss_pred             -------------HH----HHHHHHHHHHhC--CCEEEcCcEEEEEEEeC---CE-EEEEEcCC-eEEeCEEEEccCCCC
Confidence                         00    012334444433  89999999999998654   33 66666665 589999999999876


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       284 n  284 (479)
T PRK14727        284 N  284 (479)
T ss_pred             C
Confidence            4

>PRK14694 putative mercuric reductase; Provisional

Probab=98.64  E-value=5.3e-07  Score=69.45  Aligned_cols=96  Identities=19%  Similarity=0.295  Sum_probs=68.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++..... .                                          
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-~------------------------------------------  215 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-Q------------------------------------------  215 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-C------------------------------------------
Confidence            479999999999999999999999999998632110 0                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ..+.    ....+.+.|.+.  +++++.++++.++...+   .. +.+.+.++ ++.+|.||.|+|..+
T Consensus       216 -----------~~~~----~~~~l~~~l~~~--GI~v~~~~~v~~i~~~~---~~-~~v~~~~~-~i~~D~vi~a~G~~p  273 (468)
T PRK14694        216 -----------EDPA----VGEAIEAAFRRE--GIEVLKQTQASEVDYNG---RE-FILETNAG-TLRAEQLLVATGRTP  273 (468)
T ss_pred             -----------CCHH----HHHHHHHHHHhC--CCEEEeCCEEEEEEEcC---CE-EEEEECCC-EEEeCEEEEccCCCC
Confidence                       0000    012344444443  89999999999997654   33 55655554 699999999999876


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       274 n  274 (468)
T PRK14694        274 N  274 (468)
T ss_pred             C
Confidence            4

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.64  E-value=5.4e-07  Score=69.91  Aligned_cols=97  Identities=20%  Similarity=0.197  Sum_probs=70.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++++.... ..                                          
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-~~------------------------------------------  219 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL-RG------------------------------------------  219 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc-cc------------------------------------------
Confidence            37999999999999999999999999999863110 00                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ....    ....+.+.|.+.  +++++.++.+.++...+   .. ..+.+.+|+++.+|.|+.|.|..+
T Consensus       220 -----------~d~~----~~~~l~~~l~~~--GV~i~~~~~v~~v~~~~---~~-~~v~~~~g~~i~~D~vl~a~G~~p  278 (499)
T PTZ00052        220 -----------FDRQ----CSEKVVEYMKEQ--GTLFLEGVVPINIEKMD---DK-IKVLFSDGTTELFDTVLYATGRKP  278 (499)
T ss_pred             -----------CCHH----HHHHHHHHHHHc--CCEEEcCCeEEEEEEcC---Ce-EEEEECCCCEEEcCEEEEeeCCCC
Confidence                       0000    013344445444  89999999999888654   23 556677888899999999999866


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       279 n  279 (499)
T PTZ00052        279 D  279 (499)
T ss_pred             C
Confidence            4

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.63  E-value=6.7e-07  Score=68.42  Aligned_cols=97  Identities=16%  Similarity=0.257  Sum_probs=70.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  196 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------------------------------  196 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------------------------------
Confidence            47999999999999999999999999999986432100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ....    -...+.+.|.+.  +++++.+++++++...+   .. +.+.+.++ .+.+|.|+.|+|..+
T Consensus       197 -----------~~~~----~~~~l~~~l~~~--gV~v~~~~~v~~i~~~~---~~-v~v~~~~g-~i~~D~vl~a~G~~p  254 (441)
T PRK08010        197 -----------EDRD----IADNIATILRDQ--GVDIILNAHVERISHHE---NQ-VQVHSEHA-QLAVDALLIASGRQP  254 (441)
T ss_pred             -----------cCHH----HHHHHHHHHHhC--CCEEEeCCEEEEEEEcC---CE-EEEEEcCC-eEEeCEEEEeecCCc
Confidence                       0000    012344444443  89999999999998654   33 56666555 588999999999876


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       255 n  255 (441)
T PRK08010        255 A  255 (441)
T ss_pred             C
Confidence            4

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.62  E-value=5.6e-07  Score=68.87  Aligned_cols=105  Identities=20%  Similarity=0.261  Sum_probs=70.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  187 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD------------------------------------------  187 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch------------------------------------------
Confidence            47999999999999999999999999999876432000                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                          .+.      +.    -...+.+.+.+.  +++++++++++++...+   .. ..+.+++ .++.+|.||.|+|..+
T Consensus       188 ----~~~------~~----~~~~l~~~l~~~--gI~v~~~~~v~~i~~~~---~~-~~v~~~~-~~i~~d~vi~a~G~~p  246 (444)
T PRK09564        188 ----SFD------KE----ITDVMEEELREN--GVELHLNEFVKSLIGED---KV-EGVVTDK-GEYEADVVIVATGVKP  246 (444)
T ss_pred             ----hcC------HH----HHHHHHHHHHHC--CCEEEcCCEEEEEecCC---cE-EEEEeCC-CEEEcCEEEECcCCCc
Confidence                000      00    012233333333  89999999999996532   32 4455544 4799999999999764


Q ss_pred             --HHHhhhCC
Q 030042          166 --TVAWWLGL  173 (184)
Q Consensus       166 --~~~~~~~~  173 (184)
                        .+.+..++
T Consensus       247 ~~~~l~~~gl  256 (444)
T PRK09564        247 NTEFLEDTGL  256 (444)
T ss_pred             CHHHHHhcCc
Confidence              23344443

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.61  E-value=1.2e-07  Score=74.60  Aligned_cols=36  Identities=39%  Similarity=0.616  Sum_probs=33.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      .+|+|||+||+|+++|+.|++.|.+|+|+|+.+..+
T Consensus       138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G  173 (564)
T PRK12771        138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG  173 (564)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            589999999999999999999999999999987654

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.61  E-value=6.9e-08  Score=68.73  Aligned_cols=39  Identities=33%  Similarity=0.547  Sum_probs=35.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      +||++|||+|++|+.+|..|+++|.+|+|+||++-.++.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN   39 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN   39 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence            489999999999999999999999999999999876653

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.61  E-value=8.6e-07  Score=68.48  Aligned_cols=99  Identities=14%  Similarity=0.167  Sum_probs=69.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHh---CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            6 KDVVIIGAGIAGLATALALKR---LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      .+++|||||+.|+-+|..++.   .|.+|+|+|+.+.....                                       
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~---------------------------------------  228 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG---------------------------------------  228 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc---------------------------------------
Confidence            479999999999999976654   48999999986542100                                       


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                              +        +  .--...+.+.|.+.  +++++.+++++++...++  .. ..+.+.+++++.+|.||.|+|
T Consensus       229 --------~--------d--~~~~~~l~~~L~~~--GI~i~~~~~v~~i~~~~~--~~-~~v~~~~g~~i~~D~vl~a~G  285 (486)
T TIGR01423       229 --------F--------D--STLRKELTKQLRAN--GINIMTNENPAKVTLNAD--GS-KHVTFESGKTLDVDVVMMAIG  285 (486)
T ss_pred             --------c--------C--HHHHHHHHHHHHHc--CCEEEcCCEEEEEEEcCC--ce-EEEEEcCCCEEEcCEEEEeeC
Confidence                    0        0  00013344444443  899999999999986541  22 456666777899999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ....
T Consensus       286 ~~Pn  289 (486)
T TIGR01423       286 RVPR  289 (486)
T ss_pred             CCcC
Confidence            7654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.61  E-value=7.2e-07  Score=68.16  Aligned_cols=93  Identities=19%  Similarity=0.367  Sum_probs=67.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      -+++|||||+.|+-+|..|++.|.+|+++++.+.....                +                      +  
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~----------------~----------------------d--  188 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL----------------M----------------------D--  188 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh----------------c----------------------C--
Confidence            47999999999999999999999999999986542100                0                      0  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                   ..    -...+.+.|.+.  +++++.++++++++.        ..+.+.+|+.+.+|.|+.|+|...
T Consensus       189 -------------~~----~~~~l~~~l~~~--gI~i~~~~~v~~i~~--------~~v~~~~g~~~~~D~vl~a~G~~p  241 (438)
T PRK13512        189 -------------AD----MNQPILDELDKR--EIPYRLNEEIDAING--------NEVTFKSGKVEHYDMIIEGVGTHP  241 (438)
T ss_pred             -------------HH----HHHHHHHHHHhc--CCEEEECCeEEEEeC--------CEEEECCCCEEEeCEEEECcCCCc
Confidence                         00    012344444443  899999999999853        224556777899999999999755

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.60  E-value=5.3e-08  Score=70.51  Aligned_cols=34  Identities=35%  Similarity=0.500  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLG-VEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~   39 (184)
                      ||++|||+|++|+.+|..|++.+ .+|+|+|++..
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            79999999999999999999987 69999999764

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.59  E-value=7.7e-07  Score=67.23  Aligned_cols=99  Identities=25%  Similarity=0.359  Sum_probs=73.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|+.|+.+|..|+++|.+|+++|+.+.+.+....                 +                     
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-----------------~---------------------  178 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-----------------P---------------------  178 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh-----------------H---------------------
Confidence            58999999999999999999999999999998765332100                 0                     


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceE--EEEecCcEEEeeEEEecCCc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVF--IHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~--v~~~~g~~~~a~~vI~a~G~  163 (184)
                                        .-...+.+.+.+.  +++++.++++.+++...+  .. ..  +...++..+.+|.++.+.|.
T Consensus       179 ------------------~~~~~~~~~l~~~--gi~~~~~~~~~~i~~~~~--~~-~~~~~~~~~~~~~~~d~~~~~~g~  235 (415)
T COG0446         179 ------------------EVAEELAELLEKY--GVELLLGTKVVGVEGKGN--TL-VVERVVGIDGEEIKADLVIIGPGE  235 (415)
T ss_pred             ------------------HHHHHHHHHHHHC--CcEEEeCCceEEEEcccC--cc-eeeEEEEeCCcEEEeeEEEEeecc
Confidence                              0012334444444  789999999999998762  21 22  57777888999999999997


Q ss_pred             ch
Q 030042          164 HS  165 (184)
Q Consensus       164 ~s  165 (184)
                      ..
T Consensus       236 ~p  237 (415)
T COG0446         236 RP  237 (415)
T ss_pred             cc
Confidence            65

>PRK02106 choline dehydrogenase; Validated

Probab=98.58  E-value=7e-08  Score=75.82  Aligned_cols=38  Identities=42%  Similarity=0.515  Sum_probs=35.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHh-CCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKR-LGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~-~g~~v~vie~~~   38 (184)
                      |...+||++|||||++|+.+|..|++ .|.+|+|||++.
T Consensus         1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            55578999999999999999999999 799999999985

>PLN02612 phytoene desaturase

Probab=98.57  E-value=1.9e-07  Score=73.42  Aligned_cols=61  Identities=41%  Similarity=0.543  Sum_probs=47.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcccee----------------eecccHHHHHHHcCChHH
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI----------------SFAPNAWLALDALGVSHK   65 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~   65 (184)
                      ..+|+|||+|++|+++|+.|+++|.+|+|+|+.+..++...+.                ...+...++++++|+.+.
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~  169 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR  169 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence            4689999999999999999999999999999987765543221                123557778888887543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.57  E-value=1.8e-06  Score=66.60  Aligned_cols=97  Identities=19%  Similarity=0.342  Sum_probs=67.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      -+++|||||+.|+-+|..|++.|.+|+++|+.+.....                                          
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------------------------------  212 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------------------------------  212 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc------------------------------------------
Confidence            47999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEec--C--cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD--G--TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~--g--~~~~a~~vI~a  160 (184)
                                        . ..++.+.+.+.+. .++++.++++++++..+   +. +.+...+  +  +++.+|.||.|
T Consensus       213 ------------------~-d~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~---~~-~~v~~~~~~~~~~~i~~D~vi~a  269 (471)
T PRK06467        213 ------------------A-DKDIVKVFTKRIKKQFNIMLETKVTAVEAKE---DG-IYVTMEGKKAPAEPQRYDAVLVA  269 (471)
T ss_pred             ------------------C-CHHHHHHHHHHHhhceEEEcCCEEEEEEEcC---CE-EEEEEEeCCCcceEEEeCEEEEe
Confidence                              0 0122222333221 37788899999998654   33 5555433  2  46999999999


Q ss_pred             CCcchHH
Q 030042          161 DGIHSTV  167 (184)
Q Consensus       161 ~G~~s~~  167 (184)
                      +|..+..
T Consensus       270 ~G~~pn~  276 (471)
T PRK06467        270 VGRVPNG  276 (471)
T ss_pred             ecccccC
Confidence            9987643

>PRK13748 putative mercuric reductase; Provisional

Probab=98.57  E-value=1e-06  Score=69.41  Aligned_cols=96  Identities=15%  Similarity=0.209  Sum_probs=69.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++++..... .                                          
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-~------------------------------------------  307 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF-R------------------------------------------  307 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc-c------------------------------------------
Confidence            479999999999999999999999999999742110 0                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                           +.      +.    ....+.+.|.+.  +++++.+++++++...+   .. +.+.+.++ .+.+|.||.|+|...
T Consensus       308 -----~d------~~----~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~---~~-~~v~~~~~-~i~~D~vi~a~G~~p  365 (561)
T PRK13748        308 -----ED------PA----IGEAVTAAFRAE--GIEVLEHTQASQVAHVD---GE-FVLTTGHG-ELRADKLLVATGRAP  365 (561)
T ss_pred             -----cC------HH----HHHHHHHHHHHC--CCEEEcCCEEEEEEecC---CE-EEEEecCC-eEEeCEEEEccCCCc
Confidence                 00      00    012344444443  89999999999998654   33 55666655 699999999999865


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       366 n  366 (561)
T PRK13748        366 N  366 (561)
T ss_pred             C
Confidence            4

>PLN02487 zeta-carotene desaturase

Probab=98.56  E-value=2e-07  Score=72.95  Aligned_cols=61  Identities=30%  Similarity=0.412  Sum_probs=48.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcccee----------------eecccHHHHHHHcCChHHH
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI----------------SFAPNAWLALDALGVSHKL   66 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~   66 (184)
                      .+|+|||+|++|+++|+.|++.|++|+|+|+.+..++..++.                ...+....+++++|+.+++
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~  152 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENL  152 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccc
Confidence            599999999999999999999999999999988776422111                1235578888889887654

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=98.55  E-value=3.6e-08  Score=70.18  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=30.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CC-CeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL-GV-EPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~-~v~vie~~~~   39 (184)
                      .++.|+|||||..|+.+|..+.+. +. +|.|+|....
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            468999999999999999999875 33 7999998643

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.54  E-value=1.5e-06  Score=67.17  Aligned_cols=97  Identities=13%  Similarity=0.118  Sum_probs=68.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      -+++|||||+.|+-+|..|++.|.+|+++++. .....                                          
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~------------------------------------------  217 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG------------------------------------------  217 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccccc------------------------------------------
Confidence            37999999999999999999999999999863 21000                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC---cEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG---TIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g---~~~~a~~vI~a~G  162 (184)
                                 ....    -...+.+.|.+.  +++++.++.++++...+   .. +.+...++   +++.+|.|+.|.|
T Consensus       218 -----------~d~~----~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~---~~-~~v~~~~~~~~~~i~~D~vl~a~G  276 (484)
T TIGR01438       218 -----------FDQD----CANKVGEHMEEH--GVKFKRQFVPIKVEQIE---AK-VKVTFTDSTNGIEEEYDTVLLAIG  276 (484)
T ss_pred             -----------cCHH----HHHHHHHHHHHc--CCEEEeCceEEEEEEcC---Ce-EEEEEecCCcceEEEeCEEEEEec
Confidence                       0000    012344445444  89999999998888654   22 45555554   4799999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ....
T Consensus       277 ~~pn  280 (484)
T TIGR01438       277 RDAC  280 (484)
T ss_pred             CCcC
Confidence            7654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00058 glutathione reductase; Provisional

Probab=98.53  E-value=2e-06  Score=67.42  Aligned_cols=99  Identities=20%  Similarity=0.309  Sum_probs=69.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||..|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------------------------------  275 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------------------------------  275 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------------------------------
Confidence            47999999999999999999999999999986532100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeEEEecCCcc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKFLIGCDGIH  164 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~vI~a~G~~  164 (184)
                           +        +  .--...+.+.|.+.  +++++.++++.+++..+  +.. +.+...++ +++.+|.|+.|+|..
T Consensus       276 -----~--------d--~~i~~~l~~~L~~~--GV~i~~~~~V~~I~~~~--~~~-v~v~~~~~~~~i~aD~VlvA~Gr~  335 (561)
T PTZ00058        276 -----F--------D--ETIINELENDMKKN--NINIITHANVEEIEKVK--EKN-LTIYLSDGRKYEHFDYVIYCVGRS  335 (561)
T ss_pred             -----C--------C--HHHHHHHHHHHHHC--CCEEEeCCEEEEEEecC--CCc-EEEEECCCCEEEECCEEEECcCCC
Confidence                 0        0  00012344444443  89999999999998654  123 44444343 579999999999976


Q ss_pred             hH
Q 030042          165 ST  166 (184)
Q Consensus       165 s~  166 (184)
                      ..
T Consensus       336 Pn  337 (561)
T PTZ00058        336 PN  337 (561)
T ss_pred             CC
Confidence            54

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.50  E-value=1.9e-07  Score=70.06  Aligned_cols=38  Identities=37%  Similarity=0.731  Sum_probs=35.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .-+++|||||++|+.+|..|+..|++|.++||.+..++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG  161 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG  161 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence            35899999999999999999999999999999987765

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.49  E-value=2.6e-07  Score=70.72  Aligned_cols=38  Identities=42%  Similarity=0.517  Sum_probs=34.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .++|+|||||++|+++|+.|++.|.+|+|+|+.+.+++
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG  170 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG  170 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            57999999999999999999999999999999876643

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.46  E-value=2.6e-07  Score=66.13  Aligned_cols=34  Identities=38%  Similarity=0.656  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|||+|||||.+|+++|+.|.++|.+++++.+..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            6999999999999999999999999999998754

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.46  E-value=3e-07  Score=70.62  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=34.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKR--LGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~--~g~~v~vie~~~~~~~~   43 (184)
                      ..+|+||||||+|+.+|..|++  .|.+|+|||+.+.+++.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl   66 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL   66 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce
Confidence            4689999999999999999987  69999999999877654

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.45  E-value=2.5e-06  Score=65.01  Aligned_cols=100  Identities=20%  Similarity=0.263  Sum_probs=68.4

Q ss_pred             cEEEECCCHHHHHHHHHHHh--------------CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCC
Q 030042            7 DVVIIGAGIAGLATALALKR--------------LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPP   72 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~--------------~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (184)
                      .++|||||++|+-+|..|+.              .+.+|+++++.+.....                             
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-----------------------------  225 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-----------------------------  225 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------------------------
Confidence            79999999999999999875              36778888876432100                             


Q ss_pred             ccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEE
Q 030042           73 VNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIV  152 (184)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~  152 (184)
                                        +        .  .--...+.+.|.+.  +++++.+++|+++..+        .+.+++|+++
T Consensus       226 ------------------~--------~--~~~~~~~~~~L~~~--gV~v~~~~~v~~v~~~--------~v~~~~g~~i  267 (424)
T PTZ00318        226 ------------------F--------D--QALRKYGQRRLRRL--GVDIRTKTAVKEVLDK--------EVVLKDGEVI  267 (424)
T ss_pred             ------------------C--------C--HHHHHHHHHHHHHC--CCEEEeCCeEEEEeCC--------EEEECCCCEE
Confidence                              0        0  00023444555443  8999999999988643        2456788899


Q ss_pred             EeeEEEecCCcch-HHHhhhCC
Q 030042          153 KTKFLIGCDGIHS-TVAWWLGL  173 (184)
Q Consensus       153 ~a~~vI~a~G~~s-~~~~~~~~  173 (184)
                      .+|.+|.|.|... .+.+.+++
T Consensus       268 ~~d~vi~~~G~~~~~~~~~~~l  289 (424)
T PTZ00318        268 PTGLVVWSTGVGPGPLTKQLKV  289 (424)
T ss_pred             EccEEEEccCCCCcchhhhcCC
Confidence            9999999999644 23344443

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.44  E-value=2.9e-07  Score=73.66  Aligned_cols=38  Identities=47%  Similarity=0.625  Sum_probs=34.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..+|+||||||+|+++|+.|++.|++|+|+|+.+.+++
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG  364 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG  364 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            46899999999999999999999999999999877654

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.44  E-value=3.2e-07  Score=69.29  Aligned_cols=34  Identities=38%  Similarity=0.612  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +||++|||+|++|+++|+.|++.|.+|+|+|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            5899999999999999999999999999999864

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.43  E-value=8.3e-07  Score=66.22  Aligned_cols=51  Identities=10%  Similarity=0.192  Sum_probs=37.8

Q ss_pred             HHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCc-EEEeeEEEecCCcch-HHHhh
Q 030042          110 LQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT-IVKTKFLIGCDGIHS-TVAWW  170 (184)
Q Consensus       110 ~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~-~~~a~~vI~a~G~~s-~~~~~  170 (184)
                      .+.|.+.  |++++.++.|++++.+.        |.+++|. .+.++.+|=|+|... ++.+.
T Consensus       216 ~~~L~~~--GV~v~l~~~Vt~v~~~~--------v~~~~g~~~I~~~tvvWaaGv~a~~~~~~  268 (405)
T COG1252         216 ERALEKL--GVEVLLGTPVTEVTPDG--------VTLKDGEEEIPADTVVWAAGVRASPLLKD  268 (405)
T ss_pred             HHHHHHC--CCEEEcCCceEEECCCc--------EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence            3344444  99999999999998765        5555555 599999999999754 45454

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.42  E-value=7.2e-06  Score=63.16  Aligned_cols=97  Identities=22%  Similarity=0.362  Sum_probs=67.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------  207 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------------------------------  207 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------------------------------
Confidence            47999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G  162 (184)
                                        . ..++.+.+.+.++ .+++++++++++++..+  +.. +.+...++  +++.+|.||.|+|
T Consensus       208 ------------------~-d~~~~~~~~~~l~~~I~i~~~~~v~~i~~~~--~~~-v~~~~~~~~~~~i~~D~vi~a~G  265 (460)
T PRK06292        208 ------------------E-DPEVSKQAQKILSKEFKIKLGAKVTSVEKSG--DEK-VEELEKGGKTETIEADYVLVATG  265 (460)
T ss_pred             ------------------h-hHHHHHHHHHHHhhccEEEcCCEEEEEEEcC--Cce-EEEEEcCCceEEEEeCEEEEccC
Confidence                              0 0122223322222 27889999999998654  122 44433333  5799999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ....
T Consensus       266 ~~p~  269 (460)
T PRK06292        266 RRPN  269 (460)
T ss_pred             CccC
Confidence            8654

>PRK10262 thioredoxin reductase; Provisional

Probab=98.42  E-value=8.1e-06  Score=59.91  Aligned_cols=96  Identities=21%  Similarity=0.291  Sum_probs=65.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|.+|+-+|..|++.+.+|+++++.+....                                           
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~-------------------------------------------  183 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA-------------------------------------------  183 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC-------------------------------------------
Confidence            4799999999999999999999999999998642100                                           


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec------CcEEEeeEEEe
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD------GTIVKTKFLIG  159 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~------g~~~~a~~vI~  159 (184)
                                    .  ......+.+.|.+.  +++++.+++++++...+  ... ..|.+.+      .+++.+|.||.
T Consensus       184 --------------~--~~~~~~~~~~l~~~--gV~i~~~~~v~~v~~~~--~~~-~~v~~~~~~~~~~~~~i~~D~vv~  242 (321)
T PRK10262        184 --------------E--KILIKRLMDKVENG--NIILHTNRTLEEVTGDQ--MGV-TGVRLRDTQNSDNIESLDVAGLFV  242 (321)
T ss_pred             --------------C--HHHHHHHHhhccCC--CeEEEeCCEEEEEEcCC--ccE-EEEEEEEcCCCCeEEEEECCEEEE
Confidence                          0  00012222223222  78999999999997653  121 2343332      14799999999


Q ss_pred             cCCcch
Q 030042          160 CDGIHS  165 (184)
Q Consensus       160 a~G~~s  165 (184)
                      |.|..+
T Consensus       243 a~G~~p  248 (321)
T PRK10262        243 AIGHSP  248 (321)
T ss_pred             EeCCcc
Confidence            999755

>PLN02546 glutathione reductase

Probab=98.41  E-value=4.8e-06  Score=65.37  Aligned_cols=99  Identities=15%  Similarity=0.148  Sum_probs=68.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      -+++|||||..|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~------------------------------------------  290 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG------------------------------------------  290 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc------------------------------------------
Confidence            47999999999999999999999999999986532100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                           +        +  .-.+..+.+.|.+.  |++++.+++++++...++  .. +.+.+.+++...+|.||.|.|...
T Consensus       291 -----~--------d--~~~~~~l~~~L~~~--GV~i~~~~~v~~i~~~~~--g~-v~v~~~~g~~~~~D~Viva~G~~P  350 (558)
T PLN02546        291 -----F--------D--EEVRDFVAEQMSLR--GIEFHTEESPQAIIKSAD--GS-LSLKTNKGTVEGFSHVMFATGRKP  350 (558)
T ss_pred             -----c--------C--HHHHHHHHHHHHHC--CcEEEeCCEEEEEEEcCC--CE-EEEEECCeEEEecCEEEEeecccc
Confidence                 0        0  00012333444433  899999999999976431  22 556655554445899999999866


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       351 n  351 (558)
T PLN02546        351 N  351 (558)
T ss_pred             C
Confidence            4

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.39  E-value=5.9e-06  Score=64.50  Aligned_cols=93  Identities=28%  Similarity=0.312  Sum_probs=65.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.+.+|+++++.+....                                           
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------------------------------------------  389 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------------------------------------------  389 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------------------------------------------
Confidence            4899999999999999999999999999987542100                                           


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec---C--cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---G--TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g--~~~~a~~vI~a  160 (184)
                                          ...+.+.+.+. .++++++++.++++...+  +.. ..|.+.+   +  +++.+|.|+.|
T Consensus       390 --------------------~~~l~~~l~~~-~gV~i~~~~~v~~i~~~~--~~v-~~v~~~~~~~~~~~~i~~D~vi~a  445 (515)
T TIGR03140       390 --------------------DKVLQDKLKSL-PNVDILTSAQTTEIVGDG--DKV-TGIRYQDRNSGEEKQLDLDGVFVQ  445 (515)
T ss_pred             --------------------hHHHHHHHhcC-CCCEEEECCeeEEEEcCC--CEE-EEEEEEECCCCcEEEEEcCEEEEE
Confidence                                01223333322 389999999999997653  121 2344432   2  46899999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      .|...
T Consensus       446 ~G~~P  450 (515)
T TIGR03140       446 IGLVP  450 (515)
T ss_pred             eCCcC
Confidence            99754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02529 lysine-specific histone demethylase 1

Probab=98.39  E-value=5.9e-07  Score=72.02  Aligned_cols=39  Identities=44%  Similarity=0.657  Sum_probs=35.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ...||+|||+|++|+++|..|+++|++|+|+|+.+..++
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG  197 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG  197 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence            357999999999999999999999999999999876544

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.38  E-value=7.1e-07  Score=68.82  Aligned_cols=38  Identities=42%  Similarity=0.643  Sum_probs=34.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..+|+|||+|++|+++|..|++.|.+|+|+|+.+.+++
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG  180 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG  180 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence            36999999999999999999999999999999877654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.38  E-value=6.3e-07  Score=72.33  Aligned_cols=38  Identities=39%  Similarity=0.619  Sum_probs=35.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..+|+|||||++|+++|+.|++.|++|+|+|+...+++
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG  275 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG  275 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence            57899999999999999999999999999999887754

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.37  E-value=6.5e-07  Score=69.56  Aligned_cols=38  Identities=24%  Similarity=0.175  Sum_probs=34.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      |||+|||+||+|+++|+.|++.|.+|++||+....+..
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~   38 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL   38 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence            69999999999999999999999999999998877543

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=6.5e-06  Score=59.50  Aligned_cols=33  Identities=33%  Similarity=0.524  Sum_probs=31.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      -+||.+|||||.+||++|..++..|.+|.++|-
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            368999999999999999999999999999996

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.34  E-value=4.2e-06  Score=62.52  Aligned_cols=62  Identities=21%  Similarity=0.259  Sum_probs=50.2

Q ss_pred             HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHHhhh
Q 030042          107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWL  171 (184)
Q Consensus       107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~  171 (184)
                      ..+...+.+.++  |.+|+.+.+|.+|..++  +.. +.|..+||+.+.++.||--++.|-+..+.+
T Consensus       264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~--gka-~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKA-VGVRLADGTEVRSKIVVSNATPWDTFEKLL  327 (561)
T ss_pred             hHHHHHHHHHHHhccceeeehhhhhheeccC--CeE-EEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence            345556666554  88999999999999887  455 889999999999999999888888876666

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.33  E-value=1.7e-06  Score=62.55  Aligned_cols=40  Identities=33%  Similarity=0.435  Sum_probs=35.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      +.||.+|||||..|++.|...+.+|.++.++|..-..++.
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGT   58 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGT   58 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCce
Confidence            4799999999999999999999999999999986555554

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.33  E-value=1.5e-05  Score=57.67  Aligned_cols=92  Identities=23%  Similarity=0.343  Sum_probs=65.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.+.+|+++++.+....                                           
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~-------------------------------------------  178 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA-------------------------------------------  178 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc-------------------------------------------
Confidence            4899999999999999999999999999998532100                                           


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a  160 (184)
                                          ...+.+.+.+. .+++++++++++++..++   .. ..+...   ++  +++.+|.||.|
T Consensus       179 --------------------~~~~~~~l~~~-~gv~~~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~i~~D~vi~a  233 (300)
T TIGR01292       179 --------------------EKILLDRLRKN-PNIEFLWNSTVKEIVGDN---KV-EGVKIKNTVTGEEEELKVDGVFIA  233 (300)
T ss_pred             --------------------CHHHHHHHHhC-CCeEEEeccEEEEEEccC---cE-EEEEEEecCCCceEEEEccEEEEe
Confidence                                01233444332 378899999999998653   22 233322   23  57999999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       234 ~G~~~  238 (300)
T TIGR01292       234 IGHEP  238 (300)
T ss_pred             eCCCC
Confidence            99754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.33  E-value=4.1e-06  Score=62.84  Aligned_cols=39  Identities=18%  Similarity=0.179  Sum_probs=36.2

Q ss_pred             CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042          119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                      ++++++++.|+.+...+      -++...+|+++.++.+|+|||.
T Consensus       141 gIe~~~~t~v~~~D~~~------K~l~~~~Ge~~kys~LilATGs  179 (478)
T KOG1336|consen  141 GIELILGTSVVKADLAS------KTLVLGNGETLKYSKLIIATGS  179 (478)
T ss_pred             CceEEEcceeEEeeccc------cEEEeCCCceeecceEEEeecC
Confidence            89999999999999876      6788999999999999999998

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.32  E-value=1.1e-06  Score=67.09  Aligned_cols=40  Identities=30%  Similarity=0.185  Sum_probs=34.5

Q ss_pred             cccEEEECCCHHHHHHHHHHH-hCCCCeEEEeccCCCCCcc
Q 030042            5 EKDVVIIGAGIAGLATALALK-RLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~-~~g~~v~vie~~~~~~~~~   44 (184)
                      ...|+||||||+|+.+|..|. +.|++|.|+|+.+.+++.-
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLv   79 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLI   79 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEE
Confidence            358999999999999999764 6799999999999887643

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=98.31  E-value=1e-06  Score=62.19  Aligned_cols=40  Identities=30%  Similarity=0.379  Sum_probs=31.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-------CCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLG-------VEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g-------~~v~vie~~~~~~~~   43 (184)
                      +..+|+|||+|+.|+++|+.+.+..       .+|.|++.+..+...
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~   48 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTT   48 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccc
Confidence            4569999999999999998887743       579999776655433

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.31  E-value=9.5e-06  Score=60.94  Aligned_cols=101  Identities=17%  Similarity=0.221  Sum_probs=78.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      ..|+++|+|..|+-+|..|...+.+|+++++.+.+-..                                          
T Consensus       214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~------------------------------------------  251 (478)
T KOG1336|consen  214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR------------------------------------------  251 (478)
T ss_pred             ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh------------------------------------------
Confidence            46999999999999999999999999999986543100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                          .      .++.    -++.+.+++.++  ++++..++.+.++.-+.+ |.. ..|...+|.++.||.||.++|+.+
T Consensus       252 ----l------f~~~----i~~~~~~y~e~k--gVk~~~~t~~s~l~~~~~-Gev-~~V~l~dg~~l~adlvv~GiG~~p  313 (478)
T KOG1336|consen  252 ----L------FGPS----IGQFYEDYYENK--GVKFYLGTVVSSLEGNSD-GEV-SEVKLKDGKTLEADLVVVGIGIKP  313 (478)
T ss_pred             ----h------hhHH----HHHHHHHHHHhc--CeEEEEecceeecccCCC-CcE-EEEEeccCCEeccCeEEEeecccc
Confidence                0      0000    135566666666  899999999999988764 454 889999999999999999999865


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       314 ~  314 (478)
T KOG1336|consen  314 N  314 (478)
T ss_pred             c
Confidence            3

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.30  E-value=1e-05  Score=61.47  Aligned_cols=38  Identities=42%  Similarity=0.517  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC----CCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRL----GVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~----g~~v~vie~~~~~~~   42 (184)
                      +.++=|||+|+++|++|.+|-|.    |-+|.|+|+.+.+++
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG   43 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG   43 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence            45788999999999999999986    568999999886654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.30  E-value=1.3e-05  Score=63.92  Aligned_cols=34  Identities=32%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      -+++|||||..|+-+|..|++.|.+|+++|+.+.
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~  346 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ  346 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence            3799999999999999999999999999998654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.30  E-value=1.3e-06  Score=69.92  Aligned_cols=38  Identities=39%  Similarity=0.570  Sum_probs=34.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..+|+|||+|++|+++|+.|++.|++|+|+|+.+.+++
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG  230 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG  230 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            36899999999999999999999999999999877653

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.30  E-value=7.9e-07  Score=72.68  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      .+|+|||+||+|+++|+.|++.|++|+|+|+.
T Consensus       384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            58999999999999999999999999999985

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.28  E-value=1.4e-06  Score=67.13  Aligned_cols=38  Identities=45%  Similarity=0.654  Sum_probs=34.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..+|+|||+|++|+++|..|++.|.+|+|+|+.+.+++
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG  178 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG  178 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence            36899999999999999999999999999999876653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=98.28  E-value=7.7e-06  Score=60.91  Aligned_cols=67  Identities=16%  Similarity=0.141  Sum_probs=49.8

Q ss_pred             eeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeEEEecCCcch-----------HHH
Q 030042          103 FIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKFLIGCDGIHS-----------TVA  168 (184)
Q Consensus       103 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~vI~a~G~~s-----------~~~  168 (184)
                      ....+.+.+.|.+.++  +++++++++|+++..     .. +.+.+.++ ..++||.||+|+|+.|           .++
T Consensus        82 S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~-----~~-~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la  155 (376)
T TIGR03862        82 EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG-----GT-LRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVL  155 (376)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC-----Cc-EEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHH
Confidence            3446778888888775  899999999999922     23 67776543 4799999999999864           466


Q ss_pred             hhhCCCC
Q 030042          169 WWLGLSE  175 (184)
Q Consensus       169 ~~~~~~~  175 (184)
                      +.+|...
T Consensus       156 ~~lGh~i  162 (376)
T TIGR03862       156 DQRGVSV  162 (376)
T ss_pred             HHCCCcc
Confidence            7777543

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=98.28  E-value=1.3e-06  Score=64.61  Aligned_cols=64  Identities=27%  Similarity=0.437  Sum_probs=47.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCe--EEEeccCCCCCccce------e-------ee------cccHHHHHHHcCCh
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEP--LVLEKSDGLRGTGAA------I-------SF------APNAWLALDALGVS   63 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v--~vie~~~~~~~~~~~------~-------~~------~~~~~~~~~~~~~~   63 (184)
                      ..+|+|+|||++||++||+|++.+.++  +++|..++.++--++      .       .+      ....+.++.++|+.
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~   90 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLE   90 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCcc
Confidence            468999999999999999999998765  559999887653222      1       11      12467778888887


Q ss_pred             HHHHh
Q 030042           64 HKLAS   68 (184)
Q Consensus        64 ~~~~~   68 (184)
                      +++..
T Consensus        91 ~e~~~   95 (491)
T KOG1276|consen   91 DELQP   95 (491)
T ss_pred             ceeee
Confidence            66543

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.25  E-value=2.3e-05  Score=61.24  Aligned_cols=93  Identities=23%  Similarity=0.278  Sum_probs=65.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+|+|||||.+|+-+|..|+..+.+|+++++.+....                                           
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-------------------------------------------  388 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA-------------------------------------------  388 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc-------------------------------------------
Confidence            4799999999999999999999999999987643200                                           


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a  160 (184)
                                          ...+.+.+.+ ..+++++.++.++++...+  +.. ..+...   ++  +++.+|.|+.|
T Consensus       389 --------------------~~~l~~~l~~-~~gI~i~~~~~v~~i~~~~--g~v-~~v~~~~~~~g~~~~i~~D~v~~~  444 (517)
T PRK15317        389 --------------------DQVLQDKLRS-LPNVTIITNAQTTEVTGDG--DKV-TGLTYKDRTTGEEHHLELEGVFVQ  444 (517)
T ss_pred             --------------------cHHHHHHHhc-CCCcEEEECcEEEEEEcCC--CcE-EEEEEEECCCCcEEEEEcCEEEEe
Confidence                                0112222322 2389999999999998664  222 234433   33  36899999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      .|...
T Consensus       445 ~G~~p  449 (517)
T PRK15317        445 IGLVP  449 (517)
T ss_pred             ECCcc
Confidence            99855

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.23  E-value=1.9e-06  Score=68.90  Aligned_cols=38  Identities=39%  Similarity=0.585  Sum_probs=34.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..+|+|||+|++|+++|+.|++.|++|+|+|+.+.+++
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG  347 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG  347 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence            46899999999999999999999999999999887653

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.19  E-value=2e-06  Score=67.31  Aligned_cols=35  Identities=43%  Similarity=0.577  Sum_probs=33.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .++|++|||+|++|..+|..|+..|.+|+|+|+..
T Consensus         6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             CCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            47999999999999999999998899999999984

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.16  E-value=6.1e-06  Score=55.83  Aligned_cols=39  Identities=38%  Similarity=0.574  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~   43 (184)
                      +.||+|||+|.+||++||..++.  ..+|.+||..-.+++.
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG  116 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG  116 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCc
Confidence            46999999999999999999854  5689999998877643

>PLN03000 amine oxidase

Probab=98.16  E-value=3.9e-06  Score=68.20  Aligned_cols=38  Identities=45%  Similarity=0.662  Sum_probs=35.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..+|+|||+|++|+.+|+.|.+.|.+|+|+|+.+..++
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG  221 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG  221 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence            47999999999999999999999999999999887754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.14  E-value=4.5e-05  Score=58.61  Aligned_cols=33  Identities=36%  Similarity=0.498  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            479999999999999999999999999999863

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.14  E-value=2.4e-06  Score=65.12  Aligned_cols=37  Identities=46%  Similarity=0.548  Sum_probs=34.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .+|+|||+||+||++|..|+++|+.|+++|+.+.+++
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG  160 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG  160 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence            5899999999999999999999999999999887754

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.13  E-value=4.1e-06  Score=64.84  Aligned_cols=36  Identities=42%  Similarity=0.576  Sum_probs=33.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      .+|+|||+|++|+.+|..|++.|.+|+|+|+.+.++
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~g  179 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCG  179 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            699999999999999999999999999999987654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01810 betA choline dehydrogenase

Probab=98.11  E-value=3e-06  Score=66.38  Aligned_cols=32  Identities=41%  Similarity=0.399  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLG-VEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~   38 (184)
                      |++|||||.+|+.+|..|++.+ .+|+|+|++.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence            8999999999999999999998 6999999975

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.09  E-value=6.4e-05  Score=55.95  Aligned_cols=32  Identities=34%  Similarity=0.548  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVE-PLVLEKS   37 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~   37 (184)
                      ..++|||+|..|+-+|..|.+.|.+ |+|+++.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~  205 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR  205 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence            4799999999999999999989987 9999875

>PLN02976 amine oxidase

Probab=98.09  E-value=6.2e-06  Score=69.94  Aligned_cols=38  Identities=39%  Similarity=0.648  Sum_probs=34.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..+|+|||+|++|+++|+.|++.|++|+|+|+.+.+++
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG  730 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG  730 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence            47899999999999999999999999999999876654

>PLN02785 Protein HOTHEAD

Probab=98.09  E-value=5.1e-06  Score=65.61  Aligned_cols=35  Identities=29%  Similarity=0.468  Sum_probs=31.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..||++|||||.+|+.+|..|++ +.+|+|||++..
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            46999999999999999999998 689999999863

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.09  E-value=3.2e-05  Score=57.18  Aligned_cols=133  Identities=16%  Similarity=0.149  Sum_probs=68.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCCCCCcc---c-eeeecccHHHHHHHcCChHHHHhcCCCccceEE
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSDGLRGTG---A-AISFAPNAWLALDALGVSHKLASIYPPVNRISV   78 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (184)
                      ...|+|||||-++.-++..|.+.+.  +|.++-|+.......   . ...+.|.....+..+  .++.+....       
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l--~~~~R~~~l-------  260 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSL--PDEERRELL-------  260 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS---HHHHHHHH-------
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcC--CHHHHHHHH-------
Confidence            4689999999999999999998865  799998876543211   0 112333333333322  111110000       


Q ss_pred             EecCCCceeeeecCCCCCCCCCCeeeeHHHH---HHHHHhhC----CCCeeeeCceEEEEeccCCCCCcceEEEEecC--
Q 030042           79 TNLGTGATQETSLTGKFGDGSGPRFIHRKKL---LQTLADEL----PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--  149 (184)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~l~~~~----~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--  149 (184)
                              ...       .......++...+   .+.+.+..    ..++++.+++|++++..++  .. +.+.+.+.  
T Consensus       261 --------~~~-------~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~--~~-~~l~~~~~~~  322 (341)
T PF13434_consen  261 --------REQ-------RHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD--GG-VRLTLRHRQT  322 (341)
T ss_dssp             --------HHT-------GGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES---SS-EEEEEEETTT
T ss_pred             --------HHh-------HhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC--CE-EEEEEEECCC
Confidence                    000       0001112333222   22222211    1578888999999998862  24 77777652  


Q ss_pred             ---cEEEeeEEEecCCcc
Q 030042          150 ---TIVKTKFLIGCDGIH  164 (184)
Q Consensus       150 ---~~~~a~~vI~a~G~~  164 (184)
                         .++.+|.||.|||..
T Consensus       323 ~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  323 GEEETLEVDAVILATGYR  340 (341)
T ss_dssp             --EEEEEESEEEE---EE
T ss_pred             CCeEEEecCEEEEcCCcc
Confidence               478899999999963

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.06  E-value=6.3e-05  Score=56.19  Aligned_cols=48  Identities=17%  Similarity=0.225  Sum_probs=35.7

Q ss_pred             HHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042          108 KLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus       108 ~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                      .+.+.|.+.  +++++.+++++++...        .+.+.+|+++.+|.||.|+|...
T Consensus       196 ~~~~~l~~~--gV~v~~~~~v~~i~~~--------~v~~~~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       196 LVLRLLARR--GIEVHEGAPVTRGPDG--------ALILADGRTLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHHC--CCEEEeCCeeEEEcCC--------eEEeCCCCEEecCEEEEccCCCh
Confidence            344445444  8999999999887532        25556788999999999999755

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.01  E-value=9.2e-05  Score=57.08  Aligned_cols=33  Identities=33%  Similarity=0.526  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      -+|+|||||..|+-+|..|.+.|. +|+++++..
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            479999999999999999999998 799998753

>PRK13984 putative oxidoreductase; Provisional

Probab=98.00  E-value=1.1e-05  Score=64.29  Aligned_cols=38  Identities=39%  Similarity=0.541  Sum_probs=34.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..+|+|||+|++|+++|..|++.|++|+|+|+.+..++
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG  320 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG  320 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            45899999999999999999999999999999876643

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.95  E-value=2.7e-05  Score=57.38  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=51.1

Q ss_pred             CeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          101 PRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       101 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      ..++++..+...|.+.+.  |++++.+++|+++...+  +.. ..|.+.+| ++.||.||+|+|+++.
T Consensus       131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~-~~v~~~~g-~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKV-TAIVTPSG-DVQADQVVLAAGAWAG  194 (337)
T ss_pred             CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEE-EEEEcCCC-EEECCEEEEcCChhhh
Confidence            457888999999988875  89999999999999765  233 56777777 7999999999999875

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK12831 putative oxidoreductase; Provisional

Probab=97.91  E-value=0.00022  Score=55.06  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            489999999999999999999999999998753

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.89  E-value=0.00011  Score=54.19  Aligned_cols=99  Identities=24%  Similarity=0.359  Sum_probs=70.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      ...+|||+|..||-++.--.+.|.+|+++|-.+..++.     +                                 +  
T Consensus       212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-----m---------------------------------D--  251 (506)
T KOG1335|consen  212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-----M---------------------------------D--  251 (506)
T ss_pred             ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-----c---------------------------------C--
Confidence            47899999999999999999999999999975443211     0                                 0  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec---C--cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---G--TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g--~~~~a~~vI~a  160 (184)
                                   .+     -.+..+.++.. .+..+..+++|++.+.+.+ + . +.+...+   +  ++++||.+.+|
T Consensus       252 -------------~E-----isk~~qr~L~k-QgikF~l~tkv~~a~~~~d-g-~-v~i~ve~ak~~k~~tle~DvlLVs  309 (506)
T KOG1335|consen  252 -------------GE-----ISKAFQRVLQK-QGIKFKLGTKVTSATRNGD-G-P-VEIEVENAKTGKKETLECDVLLVS  309 (506)
T ss_pred             -------------HH-----HHHHHHHHHHh-cCceeEeccEEEEeeccCC-C-c-eEEEEEecCCCceeEEEeeEEEEE
Confidence                         00     12233333333 3899999999999999874 2 2 5554433   3  48999999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      .|....
T Consensus       310 iGRrP~  315 (506)
T KOG1335|consen  310 IGRRPF  315 (506)
T ss_pred             ccCccc
Confidence            997653

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.89  E-value=0.00032  Score=55.47  Aligned_cols=33  Identities=30%  Similarity=0.456  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++++.+
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            479999999999999999999999999999864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.87  E-value=1.7e-05  Score=65.58  Aligned_cols=37  Identities=49%  Similarity=0.640  Sum_probs=34.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      +.|.|||+||+||++|-+|.+.|+.|+|+||.++.++
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence            5899999999999999999999999999999988764

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.82  E-value=3e-05  Score=56.87  Aligned_cols=39  Identities=31%  Similarity=0.306  Sum_probs=33.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~   43 (184)
                      ...|+|||+||+|..+|+.|.++  +.+|.|+|+.+.+.+.
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL   60 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL   60 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce
Confidence            35899999999999999998873  6899999999877554

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.81  E-value=0.00052  Score=57.81  Aligned_cols=99  Identities=13%  Similarity=0.080  Sum_probs=67.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      .+++|||+|+.|+-+|..|++.|. .|+|+|..+..                                            
T Consensus       318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------------------------------------------  353 (985)
T TIGR01372       318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------------------------------------------  353 (985)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------------------------------
Confidence            479999999999999999999996 47888865321                                            


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE--ecCcEEEeeEEEecCC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL--VDGTIVKTKFLIGCDG  162 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~~g~~~~a~~vI~a~G  162 (184)
                                           ...+.+.+.+.  +++++.++.++.+..++. ... +.+..  .+++++.+|.|+++.|
T Consensus       354 ---------------------~~~l~~~L~~~--GV~i~~~~~v~~i~g~~~-v~~-V~l~~~~g~~~~i~~D~V~va~G  408 (985)
T TIGR01372       354 ---------------------SPEARAEAREL--GIEVLTGHVVAATEGGKR-VSG-VAVARNGGAGQRLEADALAVSGG  408 (985)
T ss_pred             ---------------------hHHHHHHHHHc--CCEEEcCCeEEEEecCCc-EEE-EEEEecCCceEEEECCEEEEcCC
Confidence                                 01133334333  899999999998875431 112 33332  2446899999999999


Q ss_pred             cch--HHHhhhCC
Q 030042          163 IHS--TVAWWLGL  173 (184)
Q Consensus       163 ~~s--~~~~~~~~  173 (184)
                      ...  .+.+.++.
T Consensus       409 ~~Pnt~L~~~lg~  421 (985)
T TIGR01372       409 WTPVVHLFSQRGG  421 (985)
T ss_pred             cCchhHHHHhcCC
Confidence            755  35555553

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.80  E-value=3.4e-05  Score=58.57  Aligned_cols=48  Identities=33%  Similarity=0.493  Sum_probs=35.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeee
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISF   49 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~   49 (184)
                      |. .+|||+|+|.|..-..+|..|++.|.+|+.+|+++..|+..++..+
T Consensus         1 m~-~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l   48 (438)
T PF00996_consen    1 MD-EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNL   48 (438)
T ss_dssp             ---SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-H
T ss_pred             CC-ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccH
Confidence            44 5799999999999999999999999999999999988887766653

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=3.2e-05  Score=55.79  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=33.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      ....|-|||||.+|.-+||+++++|++|.++|-++..
T Consensus         2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CCCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            3568999999999999999999999999999987643

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.74  E-value=0.00049  Score=54.55  Aligned_cols=59  Identities=19%  Similarity=0.143  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEE---EecCc--EEEeeEEEecCCcchHH
Q 030042          107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIH---LVDGT--IVKTKFLIGCDGIHSTV  167 (184)
Q Consensus       107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~---~~~g~--~~~a~~vI~a~G~~s~~  167 (184)
                      ..+...|.+.+.  +++++.++.++++..+++ +.. ..+.   ..+|+  .+.||.||+|||+...+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v-~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAV-VGVIAICIETGETVYIKSKATVLATGGAGRI  191 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeE-EEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence            567777777653  899999999999987531 333 3343   24564  67899999999998754

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.70  E-value=0.00045  Score=54.99  Aligned_cols=44  Identities=20%  Similarity=0.150  Sum_probs=39.1

Q ss_pred             CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHH
Q 030042          119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVA  168 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~  168 (184)
                      +++++.+.+|+.+...+      -.|.+++|.++.+|.+|+|||+...+-
T Consensus        73 ~i~L~~~~~v~~idr~~------k~V~t~~g~~~~YDkLilATGS~pfi~  116 (793)
T COG1251          73 GITLYTGEKVIQIDRAN------KVVTTDAGRTVSYDKLIIATGSYPFIL  116 (793)
T ss_pred             CcEEEcCCeeEEeccCc------ceEEccCCcEeecceeEEecCcccccc
Confidence            89999999999999886      678899999999999999999876553

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.69  E-value=0.00062  Score=55.80  Aligned_cols=33  Identities=30%  Similarity=0.539  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVE-PLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~   38 (184)
                      .+|+|||||..|+-+|..+.+.|.+ |+++++..
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4799999999999999999999997 99998754

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.67  E-value=5.5e-05  Score=59.07  Aligned_cols=37  Identities=27%  Similarity=0.353  Sum_probs=32.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGL   40 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~~   40 (184)
                      ..||.+|||||-+|+.+|..|++. .++|+++|++..+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            469999999999999999999976 6799999997644

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.64  E-value=0.0005  Score=54.74  Aligned_cols=107  Identities=26%  Similarity=0.360  Sum_probs=75.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCce
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGAT   86 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (184)
                      ..+|||||.-|+-+|..|.+.|.++.|++-.+..-             +  +++                          
T Consensus       147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM-------------e--rQL--------------------------  185 (793)
T COG1251         147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM-------------E--RQL--------------------------  185 (793)
T ss_pred             CcEEEccchhhhHHHHHHHhCCCceEEEeecchHH-------------H--Hhh--------------------------
Confidence            46999999999999999999999999998654320             0  000                          


Q ss_pred             eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-
Q 030042           87 QETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-  165 (184)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-  165 (184)
                                .      -....+++...+.. +++++.+...+.+...+   .. ..+.++||..+.|+.||.|+|... 
T Consensus       186 ----------D------~~ag~lL~~~le~~-Gi~~~l~~~t~ei~g~~---~~-~~vr~~DG~~i~ad~VV~a~GIrPn  244 (793)
T COG1251         186 ----------D------RTAGRLLRRKLEDL-GIKVLLEKNTEEIVGED---KV-EGVRFADGTEIPADLVVMAVGIRPN  244 (793)
T ss_pred             ----------h------hHHHHHHHHHHHhh-cceeecccchhhhhcCc---ce-eeEeecCCCcccceeEEEecccccc
Confidence                      0      00134444444443 88888877766655532   44 789999999999999999999755 


Q ss_pred             -HHHhhhCCCC
Q 030042          166 -TVAWWLGLSE  175 (184)
Q Consensus       166 -~~~~~~~~~~  175 (184)
                       .+++..++..
T Consensus       245 ~ela~~aGlav  255 (793)
T COG1251         245 DELAKEAGLAV  255 (793)
T ss_pred             cHhHHhcCcCc
Confidence             4677666543

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=97.61  E-value=6e-05  Score=52.70  Aligned_cols=32  Identities=34%  Similarity=0.552  Sum_probs=26.5

Q ss_pred             EEEECCCHHHHHHHHHHHhCC--CCeEEEeccCC
Q 030042            8 VVIIGAGIAGLATALALKRLG--VEPLVLEKSDG   39 (184)
Q Consensus         8 v~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~   39 (184)
                      .+|||||++|.++|-+|+++.  .+|+++-..+-
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            689999999999999999864  47888876543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.61  E-value=0.0015  Score=50.75  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=26.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKS   37 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~   37 (184)
                      ..|+|||||..|+-+|..+.+.|. +|++++..
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~  314 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM  314 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence            479999999999999998888886 67766654

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=97.60  E-value=0.00023  Score=53.15  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=47.2

Q ss_pred             HHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc--chHHHhhhCCC
Q 030042          108 KLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI--HSTVAWWLGLS  174 (184)
Q Consensus       108 ~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~--~s~~~~~~~~~  174 (184)
                      .|.+|-.+..+  |+.+.-|..|.++-...   .. +.++.+||.++..|.||+|+|-  ++.+.+..++.
T Consensus       394 yls~wt~ekir~~GV~V~pna~v~sv~~~~---~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLe  460 (659)
T KOG1346|consen  394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCC---KN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLE  460 (659)
T ss_pred             HHHHHHHHHHHhcCceeccchhhhhhhhhc---cc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccce
Confidence            34444444443  88999999999887765   33 8899999999999999999995  55666666543

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=97.57  E-value=0.00022  Score=53.27  Aligned_cols=125  Identities=18%  Similarity=0.176  Sum_probs=75.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            5 EKDVVIIGAGIAGLATALALKR--LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      +...+|||+|.+..+++.....  .+.+|++|...+...                           ...+.-...+|+..
T Consensus       178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP---------------------------YmRPPLSKELW~~~  230 (659)
T KOG1346|consen  178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---------------------------YMRPPLSKELWWYG  230 (659)
T ss_pred             cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc---------------------------ccCCCcchhceecC
Confidence            4678999999877666554432  356788886544320                           11111112222222


Q ss_pred             CCce-eeeecCCCC------CCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042           83 TGAT-QETSLTGKF------GDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKT  154 (184)
Q Consensus        83 ~~~~-~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a  154 (184)
                      +... ..++|....      ..-++.+++++++|-+.    .. |+-++.+.+|+.+...+      -.|..+||.+|.+
T Consensus       231 dpn~~k~lrfkqwsGkeRsiffepd~FfvspeDLp~~----~nGGvAvl~G~kvvkid~~d------~~V~LnDG~~I~Y  300 (659)
T KOG1346|consen  231 DPNSAKKLRFKQWSGKERSIFFEPDGFFVSPEDLPKA----VNGGVAVLRGRKVVKIDEED------KKVILNDGTTIGY  300 (659)
T ss_pred             CCChhhheeecccCCccceeEecCCcceeChhHCccc----ccCceEEEeccceEEeeccc------CeEEecCCcEeeh
Confidence            2222 333333211      01124457777776433    22 67889999999988776      5588899999999


Q ss_pred             eEEEecCCcchH
Q 030042          155 KFLIGCDGIHST  166 (184)
Q Consensus       155 ~~vI~a~G~~s~  166 (184)
                      |.+++|||....
T Consensus       301 dkcLIATG~~Pk  312 (659)
T KOG1346|consen  301 DKCLIATGVRPK  312 (659)
T ss_pred             hheeeecCcCcc
Confidence            999999998654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.54  E-value=0.00015  Score=52.41  Aligned_cols=39  Identities=33%  Similarity=0.465  Sum_probs=35.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |++....|.|||+|..|...|..+++.|++|+++|+.+.
T Consensus         1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            666556899999999999999999999999999998764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.50  E-value=0.0021  Score=53.85  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|||||.+|+-+|..+.+.|.+|+++.+..
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            479999999999999999999999999998753

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.50  E-value=0.0018  Score=52.34  Aligned_cols=33  Identities=33%  Similarity=0.502  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .+|+|||||..|+-+|..|.+.|. +|+++.+..
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            479999999999999999999987 599998754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.46  E-value=0.0023  Score=51.78  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .+|+|||||..|+-+|..+.+.|. +|+++.+.+
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            479999999999999999999987 699888754

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.44  E-value=0.0028  Score=53.07  Aligned_cols=33  Identities=30%  Similarity=0.459  Sum_probs=28.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC-C-CCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRL-G-VEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~-g-~~v~vie~~~   38 (184)
                      .+|+|||||..|+-+|..+.+. | .+|+++.+..
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            4799999999999999988877 5 3799999864

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.44  E-value=0.0003  Score=51.57  Aligned_cols=38  Identities=32%  Similarity=0.352  Sum_probs=34.1

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |.|...+|+|||+|..|..+|..|++.|.+|+++.|+.
T Consensus         1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            55566789999999999999999999999999999864

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.43  E-value=0.00087  Score=50.24  Aligned_cols=53  Identities=13%  Similarity=0.238  Sum_probs=39.9

Q ss_pred             HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCcch
Q 030042          107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGIHS  165 (184)
Q Consensus       107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~~s  165 (184)
                      .++..+..+.+.  ++.+..++.|.+++..+      ..+++.+|  ++|-+-.+|-|||...
T Consensus       273 krl~~yae~~f~~~~I~~~~~t~Vk~V~~~~------I~~~~~~g~~~~iPYG~lVWatG~~~  329 (491)
T KOG2495|consen  273 KRLVEYAENQFVRDGIDLDTGTMVKKVTEKT------IHAKTKDGEIEEIPYGLLVWATGNGP  329 (491)
T ss_pred             HHHHHHHHHHhhhccceeecccEEEeecCcE------EEEEcCCCceeeecceEEEecCCCCC
Confidence            345555555554  78999999999888765      77777777  4677899999999754

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.43  E-value=0.0002  Score=48.12  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .|.|||+|..|...|..+++.|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            489999999999999999999999999999653

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.42  E-value=0.00019  Score=47.14  Aligned_cols=32  Identities=31%  Similarity=0.397  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|.|||||..|.++|..|++.|.+|.++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999999864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.41  E-value=0.0028  Score=49.12  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .+++|||+|..|+-+|..+.+.|. +|+|+++.+
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            479999999999999999999986 699999864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.36  E-value=0.0011  Score=51.19  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|||+|.+|+-.|..|++.+.+|+++.+..
T Consensus       205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            579999999999999999999999999998854

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.35  E-value=0.00093  Score=52.45  Aligned_cols=34  Identities=24%  Similarity=0.444  Sum_probs=28.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+|+|||+|.+|.=.|..|++...+|.+.-|..
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~  216 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG  216 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence            3589999999999999999999888888877754

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.32  E-value=0.0019  Score=48.89  Aligned_cols=41  Identities=17%  Similarity=0.357  Sum_probs=34.6

Q ss_pred             CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      ++.++.+++|+++....      -.+.+.+| .+.+|.+|+|+|+...
T Consensus        67 ~i~~~~~~~v~~id~~~------~~v~~~~g-~~~yd~LvlatGa~~~  107 (415)
T COG0446          67 GIDVRTGTEVTSIDPEN------KVVLLDDG-EIEYDYLVLATGARPR  107 (415)
T ss_pred             CCEEeeCCEEEEecCCC------CEEEECCC-cccccEEEEcCCCccc
Confidence            78899999999998875      55777777 7889999999998754

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.31  E-value=0.0034  Score=47.20  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=32.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ++..|+|+|+|.+|.++...|-...++|+|+.+++.
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny   89 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY   89 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccc
Confidence            456899999999999999999888999999998754

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.30  E-value=0.00049  Score=44.75  Aligned_cols=31  Identities=32%  Similarity=0.485  Sum_probs=29.3

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            8 VVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         8 v~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |+|+|+|..|+..|+.|++.|.+|.++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999999865

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.30  E-value=0.00047  Score=53.11  Aligned_cols=38  Identities=37%  Similarity=0.695  Sum_probs=34.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |.++...++|+|+|.+|+.+|..|+++|.+|+++|+..
T Consensus         1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          1 MELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            54556789999999999999999999999999999864

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.19  E-value=0.00066  Score=47.30  Aligned_cols=33  Identities=27%  Similarity=0.539  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +++|||+|..|..+|..|.+.|.+|+++|+++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            689999999999999999999999999999764

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.18  E-value=0.00062  Score=43.49  Aligned_cols=34  Identities=38%  Similarity=0.488  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +..|+|+|+|..|..+|..|++.|. +++++|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            5689999999999999999999999 699999865

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.17  E-value=0.00063  Score=52.87  Aligned_cols=33  Identities=39%  Similarity=0.598  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|||+|.+|+.+|..|+++|.+|+++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999999999999999999999654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.15  E-value=0.00062  Score=49.78  Aligned_cols=33  Identities=36%  Similarity=0.518  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +|.|||+|..|..+|..|+++|.+|+++|+.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999998753

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.12  E-value=0.0009  Score=48.32  Aligned_cols=37  Identities=27%  Similarity=0.446  Sum_probs=32.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |++  .+|.|||+|..|...|..+++.|.+|+++|.++.
T Consensus         1 ~~~--~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          1 MGI--QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             CCc--cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            553  3799999999999999999999999999998654

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.10  E-value=0.00093  Score=48.37  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|.|||+|..|...|..|++.|.+|+++|+++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.10  E-value=0.00091  Score=48.56  Aligned_cols=34  Identities=32%  Similarity=0.316  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|.|||+|..|...|..|++.|.+|+++|+++
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4579999999999999999999999999999864

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.09  E-value=0.00072  Score=52.24  Aligned_cols=34  Identities=35%  Similarity=0.457  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      .|+|||.|++|+++|..|.+.|.+|.++|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999987643

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.09  E-value=0.0011  Score=48.45  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            69999999999999999999999999999853

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.08  E-value=0.01  Score=50.01  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=28.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC-CC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRL-GV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~-g~-~v~vie~~~   38 (184)
                      .+|+|||||..|+-+|..+.+. |. +|+++.+..
T Consensus       667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            4799999999999999988876 76 799999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.03  E-value=0.0011  Score=50.27  Aligned_cols=44  Identities=16%  Similarity=0.297  Sum_probs=36.1

Q ss_pred             CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      +.+|+++++|++|+..+   +. +.+.+.+|+++.||.||.|+.....
T Consensus       223 g~~i~l~~~V~~I~~~~---~~-v~v~~~~g~~~~ad~VI~a~p~~~l  266 (450)
T PF01593_consen  223 GGEIRLNTPVTRIERED---GG-VTVTTEDGETIEADAVISAVPPSVL  266 (450)
T ss_dssp             GGGEESSEEEEEEEEES---SE-EEEEETTSSEEEESEEEE-S-HHHH
T ss_pred             CceeecCCcceeccccc---cc-cccccccceEEecceeeecCchhhh
Confidence            45899999999999986   45 8899999999999999999976543

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.02  E-value=0.0012  Score=45.06  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEecc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~   37 (184)
                      +...|+|||+|..|...|..|++.|+ +++++|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35789999999999999999999999 69999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.01  E-value=0.00071  Score=45.67  Aligned_cols=33  Identities=27%  Similarity=0.467  Sum_probs=27.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .|.|||.|..|+.+|..|++.|++|+.+|.++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            689999999999999999999999999998763

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.98  E-value=0.0018  Score=47.57  Aligned_cols=39  Identities=18%  Similarity=0.381  Sum_probs=33.7

Q ss_pred             CCCc-cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            1 MAMV-EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         1 m~~~-~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      |+|. ...|.|||+|..|..+|+.++..|+ +++++|.++.
T Consensus         1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            6664 4689999999999999999999886 8999998664

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.97  E-value=0.0043  Score=47.39  Aligned_cols=44  Identities=9%  Similarity=0.157  Sum_probs=33.0

Q ss_pred             CCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCcch
Q 030042          119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGIHS  165 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~~s  165 (184)
                      +++++.+++|++++..+  +.. ..+.+.++  ..+.+|.||+|+|...
T Consensus       273 Gv~I~~g~~V~~v~~~~--~~V-~~v~~~~g~~~~i~AD~VVLAtGrf~  318 (422)
T PRK05329        273 GGRIMPGDEVLGAEFEG--GRV-TAVWTRNHGDIPLRARHFVLATGSFF  318 (422)
T ss_pred             CCEEEeCCEEEEEEEeC--CEE-EEEEeeCCceEEEECCEEEEeCCCcc
Confidence            88999999999998765  222 33445555  3689999999999753

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.035  Score=40.60  Aligned_cols=95  Identities=20%  Similarity=0.282  Sum_probs=67.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ..+|+|||||-+++--|+.|++.+.+|+++=|++.+..                                          
T Consensus       143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------  180 (305)
T COG0492         143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------  180 (305)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------------------------------------------
Confidence            34999999999999999999999989999998765311                                          


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDG  162 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G  162 (184)
                                           ...+.+.+.+.. ++.+++++.+..+.-++  ... +.++...+  ..+.++.|.++.|
T Consensus       181 ---------------------~~~~~~~l~~~~-~i~~~~~~~i~ei~G~~--v~~-v~l~~~~~~~~~~~~~gvf~~iG  235 (305)
T COG0492         181 ---------------------EEILVERLKKNV-KIEVLTNTVVKEILGDD--VEG-VVLKNVKGEEKELPVDGVFIAIG  235 (305)
T ss_pred             ---------------------CHHHHHHHHhcC-CeEEEeCCceeEEecCc--cce-EEEEecCCceEEEEeceEEEecC
Confidence                                 123334444332 68889999998887653  122 44443323  3678999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ....
T Consensus       236 ~~p~  239 (305)
T COG0492         236 HLPN  239 (305)
T ss_pred             CCCc
Confidence            7553

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.94  E-value=0.0015  Score=47.38  Aligned_cols=34  Identities=24%  Similarity=0.480  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|.|||+|..|...|..|++.|.+|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4699999999999999999999999999998653

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.93  E-value=0.016  Score=49.20  Aligned_cols=32  Identities=34%  Similarity=0.467  Sum_probs=27.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVE-PLVLEKS   37 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~   37 (184)
                      .+|+|||||.+|+-+|..+.+.|.+ |+++.+.
T Consensus       572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr  604 (1006)
T PRK12775        572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR  604 (1006)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence            4899999999999999999999985 7777654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.92  E-value=0.0015  Score=47.39  Aligned_cols=33  Identities=21%  Similarity=0.464  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            689999999999999999999999999998753

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.92  E-value=0.0017  Score=47.64  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|.|||+|..|...|..++..|++|+++|..+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998753

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.91  E-value=0.0019  Score=47.31  Aligned_cols=37  Identities=27%  Similarity=0.473  Sum_probs=32.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |+. ..+|.|||+|..|..+|..|++.|++|+++|++.
T Consensus         1 ~~~-~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          1 MNP-IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             CCC-ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            553 3579999999999999999999999999999754

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.89  E-value=0.002  Score=45.94  Aligned_cols=35  Identities=26%  Similarity=0.453  Sum_probs=31.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ....|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            35789999999999999999999996 799999865

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.86  E-value=0.0017  Score=49.54  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=33.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |++  ..|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus         1 m~~--~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          1 MSF--ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             CCc--cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            653  5799999999999999999999999999998653

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.86  E-value=0.0014  Score=39.83  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      +...|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            3568999999999999999999999999999986

>PRK13984 putative oxidoreductase; Provisional

Probab=96.84  E-value=0.017  Score=46.41  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=21.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLG   28 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g   28 (184)
                      .+|+|||||..|+-+|..|++.+
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~~  441 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARLQ  441 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhcc
Confidence            48999999999999999998875

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.81  E-value=0.0022  Score=50.05  Aligned_cols=38  Identities=24%  Similarity=0.370  Sum_probs=33.1

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |+|. ..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus         1 ~~~i-~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          1 MTMI-MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CCCc-CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5553 3799999999999999999999999999998643

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.002  Score=48.16  Aligned_cols=47  Identities=34%  Similarity=0.410  Sum_probs=42.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeec
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFA   50 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~   50 (184)
                      .+||++|||-|..=..+|...++.|.+|+=+|+++..|+...+..++
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms   53 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS   53 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence            46999999999999999999999999999999999998887776665

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.78  E-value=0.0025  Score=46.34  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|.|||+|..|...|..|++.|.+|+++|+++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4799999999999999999999999999998653

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.78  E-value=0.0026  Score=43.67  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|||||.+|...+..|.+.|.+|+|+++..
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3589999999999999999999999999998753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.76  E-value=0.0045  Score=39.55  Aligned_cols=35  Identities=37%  Similarity=0.485  Sum_probs=31.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVE-PLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~   38 (184)
                      +...++|||+|-+|..+++.|...|.+ ++|+.|..
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            346899999999999999999999996 99999863

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.75  E-value=0.0027  Score=46.91  Aligned_cols=37  Identities=27%  Similarity=0.310  Sum_probs=32.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |+. ...|.|||+|..|...|..|++.|.+|+++++..
T Consensus         1 ~~~-~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          1 MHH-GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CCC-CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            553 3479999999999999999999999999999854

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.75  E-value=0.0025  Score=46.46  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|+|||+|..|..+|..|++.|.+|+++++..
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            58999999999999999999999999999853

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.74  E-value=0.0029  Score=39.15  Aligned_cols=32  Identities=38%  Similarity=0.542  Sum_probs=28.3

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            8 VVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         8 v~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |+|+|.|..|..++..|.+.+.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            68999999999999999998879999999753

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.73  E-value=0.003  Score=46.89  Aligned_cols=31  Identities=19%  Similarity=0.372  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      +|.|||+|..|...|..|++.|.+|.++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            6999999999999999999999999999985

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.73  E-value=0.0029  Score=41.56  Aligned_cols=32  Identities=38%  Similarity=0.394  Sum_probs=29.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      ...|+|||||..|...|..|.+.|.+|+|+++
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            45899999999999999999999999999964

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.0038  Score=46.10  Aligned_cols=44  Identities=30%  Similarity=0.390  Sum_probs=38.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceee
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS   48 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~   48 (184)
                      .|||+|.|-|+.-+.++..|+..|.+|+.||+++..|...++..
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~aslt   49 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLT   49 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccccee
Confidence            59999999999999999999999999999999998776655443

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=96.71  E-value=0.0029  Score=46.16  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      +|+|||+|..|..+|..|++.|.+|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            589999999999999999999999999998

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.69  E-value=0.0031  Score=43.21  Aligned_cols=34  Identities=29%  Similarity=0.456  Sum_probs=30.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ....++|||||-.|...|..|.+.|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            3468999999999999999999999999999864

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.69  E-value=0.0034  Score=44.23  Aligned_cols=35  Identities=29%  Similarity=0.338  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      ...|+|||+|..|..+|..|++.|. +++++|.+.-
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            5789999999999999999999998 7999998753

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.69  E-value=0.0037  Score=43.19  Aligned_cols=35  Identities=34%  Similarity=0.347  Sum_probs=31.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +...|+|||+|..|..+|..|++.|. +++++|.+.
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            35789999999999999999999999 599999874

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.67  E-value=0.0032  Score=46.65  Aligned_cols=35  Identities=40%  Similarity=0.567  Sum_probs=31.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +...|+|||+|..|..+|..|++.|. +++|+|++.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            35689999999999999999999998 799999875

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.66  E-value=0.0038  Score=42.78  Aligned_cols=35  Identities=34%  Similarity=0.528  Sum_probs=31.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .+..|+|||.|..|..+|..|++.|. +++++|.+.
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            35789999999999999999999998 799999874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.61  E-value=0.004  Score=44.01  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +.+|+|||.|..|..+|..|++.|+ +++++|.+.
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            5789999999999999999999998 799999864

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.61  E-value=0.0048  Score=47.55  Aligned_cols=39  Identities=21%  Similarity=0.359  Sum_probs=34.1

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |.+....++|+|.|.+|+++|..|+++|.+|++.|..+.
T Consensus         1 ~~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          1 MTFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            555556899999999999999999999999999997554

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.59  E-value=0.0047  Score=41.29  Aligned_cols=32  Identities=34%  Similarity=0.351  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .|+|||+|..|...|..|++.|. +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999999 599999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.57  E-value=0.0045  Score=45.89  Aligned_cols=35  Identities=43%  Similarity=0.582  Sum_probs=31.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +...|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            35789999999999999999999999 899999864

>PRK08328 hypothetical protein; Provisional

Probab=96.56  E-value=0.0045  Score=43.37  Aligned_cols=35  Identities=26%  Similarity=0.423  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      ...|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v   62 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP   62 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            5689999999999999999999998 6999987653

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.55  E-value=0.0045  Score=43.28  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +..|+|||+|..|..+|..|++.|. +++++|.+.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            5789999999999999999999998 799998765

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.55  E-value=0.039  Score=44.67  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .+++|||+|..++-+|..+.+.|. +|+++.+..
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~  485 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD  485 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            479999999999999998888885 799998754

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=96.51  E-value=0.0048  Score=48.32  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            35799999999999999999999999999998754

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.49  E-value=0.0056  Score=39.46  Aligned_cols=33  Identities=30%  Similarity=0.423  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      .|+|||+|-.|..+|..|++.|. +++++|.+.-
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v   34 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV   34 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence            48999999999999999999998 6999998653

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.47  E-value=0.0047  Score=46.41  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+++|||+|.+|+.+|..|...|.+|.++|++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.46  E-value=0.0054  Score=47.30  Aligned_cols=38  Identities=26%  Similarity=0.389  Sum_probs=32.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |......++|+|+|.+|+++|..|++.|.+|++.|+..
T Consensus         1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            44444579999999999999999999999999999754

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.46  E-value=0.0041  Score=39.76  Aligned_cols=32  Identities=31%  Similarity=0.334  Sum_probs=27.9

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            8 VVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         8 v~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ++|+|+|+.+.+++..++..|++|+|+|.++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999998865

>PRK04148 hypothetical protein; Provisional

Probab=96.44  E-value=0.0037  Score=39.67  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..+++||.| .|..+|..|++.|.+|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 899899999999999999998753

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.43  E-value=0.0055  Score=40.49  Aligned_cols=33  Identities=33%  Similarity=0.405  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|.+||-|..|...|..|.+.|++|.++|+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            479999999999999999999999999999864

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.41  E-value=0.0057  Score=45.16  Aligned_cols=32  Identities=28%  Similarity=0.409  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++.|||+|..|.++|..|++.|.+|.+++|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            58999999999999999999999999999854

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.41  E-value=0.02  Score=42.97  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=33.0

Q ss_pred             CCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEecCCcch
Q 030042          119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGCDGIHS  165 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a~G~~s  165 (184)
                      +++++-+++|.+++..+   ++.+.+...   .+  ++++.|.||.|||...
T Consensus       292 ~v~l~~~~ev~~~~~~G---~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~  340 (436)
T COG3486         292 DVRLLSLSEVQSVEPAG---DGRYRLTLRHHETGELETVETDAVILATGYRR  340 (436)
T ss_pred             CeeeccccceeeeecCC---CceEEEEEeeccCCCceEEEeeEEEEeccccc
Confidence            57889999999999886   332444442   22  5899999999999874

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.41  E-value=0.0062  Score=42.63  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +..|+|||.|-.|..+|..|++.|. +++++|.+.
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            5789999999999999999999998 799999765

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.40  E-value=0.0057  Score=46.46  Aligned_cols=34  Identities=29%  Similarity=0.308  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|+|+|.|+.|+.+|..++..|.+|+++|.++.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            4799999999999999999999999999998653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.40  E-value=0.0069  Score=41.41  Aligned_cols=35  Identities=29%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      +..|+|||+|..|..+|..|++.|. +++++|.+.-
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v   54 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV   54 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence            5789999999999999999999999 5999997643

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.0019  Score=48.05  Aligned_cols=45  Identities=27%  Similarity=0.420  Sum_probs=40.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceee
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS   48 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~   48 (184)
                      ++|||+|+|-|..-+.++..|+..|.+|+.+||++..|+.+.+..
T Consensus         3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt   47 (440)
T KOG1439|consen    3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT   47 (440)
T ss_pred             CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee
Confidence            469999999999999999999999999999999998877666555

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.36  E-value=0.0064  Score=40.41  Aligned_cols=34  Identities=35%  Similarity=0.457  Sum_probs=29.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|+|+|+|.+|..+|..|...|.+++++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            3689999999999999999999999999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.34  E-value=0.0054  Score=47.81  Aligned_cols=34  Identities=35%  Similarity=0.484  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+|+|+|+|++|+.++..+...|.+|.++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999999999999999999999999875

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.34  E-value=0.0079  Score=41.08  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=31.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ++..|+|||+|..|..+|..|++.|. +++++|.+.
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            35789999999999999999999999 599999764

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.32  E-value=0.0074  Score=44.20  Aligned_cols=32  Identities=38%  Similarity=0.568  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      +|.|||+|..|.++|+.|++.|.  ++.++|++.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            59999999999999999999984  799999865

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.32  E-value=0.01  Score=38.28  Aligned_cols=32  Identities=38%  Similarity=0.598  Sum_probs=28.8

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      +|.|||+ |..|..+|+.|...++  ++.++|...
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            6999999 9999999999998876  699999874

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.30  E-value=0.0069  Score=44.59  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|.|||+|..|...|..|++.|.+|.++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.29  E-value=0.007  Score=44.29  Aligned_cols=38  Identities=34%  Similarity=0.528  Sum_probs=31.8

Q ss_pred             CCCcc-ccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            1 MAMVE-KDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         1 m~~~~-~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      |+.+. .+|.|||.|..|.++|..|.+.|.  +|.++++++
T Consensus         1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            55443 479999999999999999999885  789999864

>PRK08223 hypothetical protein; Validated

Probab=96.29  E-value=0.0084  Score=43.18  Aligned_cols=35  Identities=29%  Similarity=0.330  Sum_probs=31.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ++..|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            35789999999999999999999999 799999865

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.28  E-value=0.0095  Score=43.58  Aligned_cols=32  Identities=28%  Similarity=0.546  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .|.|||+|..|..+|+.|+..|. +|+++|...
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            69999999999999999999876 899999844

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.24  E-value=0.01  Score=43.52  Aligned_cols=35  Identities=29%  Similarity=0.319  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..+|.|||+|..|.++|..|++.|++|.++++...
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            34799999999999999999999999999998653

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.22  E-value=0.0065  Score=46.36  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            589999999999999999999999999998653

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.21  E-value=0.012  Score=43.18  Aligned_cols=35  Identities=29%  Similarity=0.527  Sum_probs=31.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      ...+|.|||+|-.|.++|+.|...++  +++++|.+.
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            45699999999999999999998887  799999854

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.17  E-value=0.0096  Score=44.72  Aligned_cols=33  Identities=30%  Similarity=0.434  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLG-VEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~   38 (184)
                      .+++|||+|-.|..+|..|++++ .+|++.+|..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            48999999999999999999998 7999999974

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.16  E-value=0.0079  Score=47.06  Aligned_cols=34  Identities=26%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|.|||+|..|...|..+++.|++|+++|+.+.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.12  E-value=0.013  Score=40.09  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ...++|+|.|-.|..+|..|.+.|.+|++.|++
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            357999999999999999999999999999875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02240 UDP-glucose 4-epimerase

Probab=96.11  E-value=0.012  Score=43.74  Aligned_cols=37  Identities=24%  Similarity=0.489  Sum_probs=33.0

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEecc
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      |+|+...|+|.|| |..|..++..|.++|.+|+++++.
T Consensus         1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~   38 (352)
T PLN02240          1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL   38 (352)
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            7777778999997 999999999999999999999753

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.11  E-value=0.009  Score=44.64  Aligned_cols=33  Identities=30%  Similarity=0.597  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ++.|||.|..||..|..|++.|.+|+.+|.++.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            689999999999999999999999999998753

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.09  E-value=0.011  Score=44.14  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=31.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +...|+|||+|..|..+|..|++.|+ +++++|.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            35789999999999999999999998 799999865

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.08  E-value=0.13  Score=41.16  Aligned_cols=33  Identities=33%  Similarity=0.534  Sum_probs=27.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLG-VEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~   38 (184)
                      ..++|||+|..|.-.|..+.+.+ .+|+|+.+.+
T Consensus       268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~  301 (564)
T PRK12771        268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT  301 (564)
T ss_pred             CCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            47999999999999988888887 4688887754

>PLN02602 lactate dehydrogenase

Probab=96.04  E-value=0.015  Score=43.36  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      .+|.|||+|-.|.++|+.|...++  +++++|.+.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~   72 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP   72 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            699999999999999999988776  699999854

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.03  E-value=0.009  Score=43.12  Aligned_cols=32  Identities=25%  Similarity=0.467  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|.|||.|..|..+|..|++.|.+|.++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.02  E-value=0.011  Score=42.79  Aligned_cols=33  Identities=42%  Similarity=0.518  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ..++|||+|-+|.++|+.|++.|. +|+|++|..
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            479999999999999999999998 799999864

>PRK06153 hypothetical protein; Provisional

Probab=96.01  E-value=0.0088  Score=44.77  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...|+|||+|-.|..++..|++.|. +++++|.+.
T Consensus       176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~  210 (393)
T PRK06153        176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD  210 (393)
T ss_pred             hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence            4689999999999999999999998 799999874

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.99  E-value=0.014  Score=43.91  Aligned_cols=35  Identities=26%  Similarity=0.398  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +...|+|||+|..|..+|..|++.|. +++++|.+.
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            35789999999999999999999998 799999864

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.98  E-value=0.016  Score=40.51  Aligned_cols=39  Identities=26%  Similarity=0.376  Sum_probs=33.5

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |.|+...++|.|+ |..|..++..|.++|.+|+++.|++.
T Consensus         1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~   40 (246)
T PRK05653          1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE   40 (246)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            6666668999996 88999999999999999999998753

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.97  E-value=0.016  Score=40.49  Aligned_cols=34  Identities=38%  Similarity=0.519  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCC---eEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVE---PLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~---v~vie~~~   38 (184)
                      ...++|+|+|-+|..+|..|.+.|.+   +.++||..
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            45799999999999999999999975   99999973

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.97  E-value=0.015  Score=40.87  Aligned_cols=38  Identities=21%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |.++...++|+|| |..|..+|.+|.++|.+|+++.|..
T Consensus         1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~   39 (251)
T PRK07231          1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE   39 (251)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5555678999996 7899999999999999999999875

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.96  E-value=0.015  Score=40.74  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      .|+|||+|..|..++..|++.|+ +++|+|.+.-
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V   34 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI   34 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence            48999999999999999999998 7999998653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.96  E-value=0.016  Score=42.44  Aligned_cols=34  Identities=29%  Similarity=0.456  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      .+|.|||+|..|..+|+.+++.+. +++++|....
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            489999999999999999998876 8999998543

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=95.95  E-value=0.014  Score=41.11  Aligned_cols=35  Identities=29%  Similarity=0.384  Sum_probs=30.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-----------CCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLG-----------VEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g-----------~~v~vie~~~   38 (184)
                      +..+|+|||+|-.|..++..|++.|           .+++|+|.+.
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            4679999999999999999999874           3889999865

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.95  E-value=0.012  Score=40.94  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +..|+|||-|-.|..++-.|+|.|+ ++++||.+.
T Consensus        30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~   64 (263)
T COG1179          30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD   64 (263)
T ss_pred             hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence            5689999999999999999999999 799999876

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=95.86  E-value=0.018  Score=40.70  Aligned_cols=35  Identities=29%  Similarity=0.355  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...++|+|+|..+..+|..++..|++|+|+|.++.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            46899999999999999999999999999997754

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.85  E-value=0.021  Score=37.92  Aligned_cols=34  Identities=24%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             ccccEEEECCCH-HHHHHHHHHHhCCCCeEEEecc
Q 030042            4 VEKDVVIIGAGI-AGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG~-~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ...+++|||+|- +|..+|..|.++|.+|.++.+.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            356899999996 6999999999999999999985

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.83  E-value=0.014  Score=46.42  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      -+++|+|+|..|..+|..|.++|.+++++|+++.
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4789999999999999999999999999999753

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=95.83  E-value=0.016  Score=42.17  Aligned_cols=34  Identities=29%  Similarity=0.436  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|.|||+|..|.-.|..++..|++|+++|.+.
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~   36 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP   36 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence            4589999999999999999999779999999874

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.82  E-value=0.016  Score=42.25  Aligned_cols=34  Identities=29%  Similarity=0.477  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|||.|.+|..++..|.+.|.+|.++++.+
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999999874

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.81  E-value=0.014  Score=43.61  Aligned_cols=32  Identities=38%  Similarity=0.560  Sum_probs=27.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .|+|+|+||.||.++..++..|. +|+++|+.+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~  203 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP  203 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence            59999999999999888878886 677778765

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=95.80  E-value=0.013  Score=47.96  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|.|||+|..|...|..++..|++|+++|.+..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998753

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.79  E-value=0.023  Score=39.96  Aligned_cols=38  Identities=26%  Similarity=0.321  Sum_probs=32.6

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |.++...++|+|+ |..|..+|..|+++|.+|++++++.
T Consensus         1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5545568999998 9999999999999999999998764

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.77  E-value=0.015  Score=45.16  Aligned_cols=33  Identities=21%  Similarity=0.131  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|+|+|.|.+|.++|..|.+.|.+|++.|.++
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            479999999999999999999999999999643

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.76  E-value=0.017  Score=43.77  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|+|+|.|+.|..+|..|+..|.+|+++|.++.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            35799999999999999999999999999998763

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.75  E-value=0.018  Score=43.47  Aligned_cols=35  Identities=34%  Similarity=0.449  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +...|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~  169 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV  169 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            35689999999999999999999999 699999874

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=95.75  E-value=0.014  Score=47.69  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|.|||+|..|...|..+++.|++|+++|.+..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3699999999999999999999999999998753

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.74  E-value=0.018  Score=43.76  Aligned_cols=35  Identities=34%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +...|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            35789999999999999999999998 699999764

>PLN02612 phytoene desaturase

Probab=95.74  E-value=0.052  Score=43.32  Aligned_cols=54  Identities=19%  Similarity=0.437  Sum_probs=40.0

Q ss_pred             HHHHHHHhhC--CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042          108 KLLQTLADEL--PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus       108 ~l~~~l~~~~--~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                      .+.+.|.+..  .|++|+++++|++|..+++ +.. +.+.+.+|+.+.||.||.|+..
T Consensus       309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-g~v-~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-GTV-KHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHhcCCEEEeCCeeeEEEECCC-CcE-EEEEECCCcEEECCEEEECCCH
Confidence            3455555543  2889999999999988652 222 5577778888999999999864

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.74  E-value=0.019  Score=42.03  Aligned_cols=33  Identities=36%  Similarity=0.581  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~   39 (184)
                      .|+|||+|..|.++|+.|+..|.  ++.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            58999999999999999999884  7999998653

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK08264 short chain dehydrogenase; Validated

Probab=95.74  E-value=0.026  Score=39.42  Aligned_cols=39  Identities=23%  Similarity=0.192  Sum_probs=32.4

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      |++....++|+|| |..|..+|..|.++|. +|+++.+...
T Consensus         2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~   42 (238)
T PRK08264          2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE   42 (238)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh
Confidence            3444567999995 9999999999999999 9999998653

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.74  E-value=0.016  Score=42.28  Aligned_cols=32  Identities=31%  Similarity=0.470  Sum_probs=28.5

Q ss_pred             EEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            8 VVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         8 v~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      |.|||+|..|..+|+.|+..++ +|+++|.++.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            5799999999999999998876 9999998753

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.73  E-value=0.013  Score=45.45  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+|.|||.|..|..+|..|+++|++|.++++.+.
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998653

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.72  E-value=0.021  Score=41.39  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|+|.|.+|..+|..|...|.+|++++|..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.72  E-value=0.017  Score=44.61  Aligned_cols=32  Identities=25%  Similarity=0.450  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +++|+|+|..|..+|..|.+.|.+|+++|+++
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            69999999999999999999999999999865

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.71  E-value=0.017  Score=42.27  Aligned_cols=32  Identities=28%  Similarity=0.467  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|+|+|+|..|...|+.|++.|.+|+++-|.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            68999999999999999999997788877754

>PRK07326 short chain dehydrogenase; Provisional

Probab=95.71  E-value=0.022  Score=39.78  Aligned_cols=36  Identities=25%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             CccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            3 MVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         3 ~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++...++|+|+ |..|..+|..|+++|.+|+++.|++
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~   40 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ   40 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence            33457999985 8899999999999999999998864

>PRK07411 hypothetical protein; Validated

Probab=95.71  E-value=0.018  Score=43.70  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            5789999999999999999999998 699999764

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.71  E-value=0.016  Score=45.17  Aligned_cols=34  Identities=35%  Similarity=0.503  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|+|+|+.|+.++..+...|.+|+++|.+.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999999999999999999999999865

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.70  E-value=0.018  Score=45.09  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|.|+|.|.+|+++|..|.+.|.+|.+.|...
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            4579999999999999999999999999999644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
3rp8_A	407	Crystal Structure Of Klebsiella Pneumoniae R204q Hp		1e-05
3rp6_A	407	Crystal Structure Of Klebsiella Pneumoniae Hpxo Com		6e-04

>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo Complexed With Fad Length = 407

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 6/149 (4%)
Query: 25  KRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84
           K+ G++  V E    ++  GAAIS  PN    +  LG+   + +   P+ R++  +  +G
Sbjct: 43  KQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG 102
Query: 85  A--TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPV 142
              TQ +        GS P  + R +L + + D     ++ F  ++    ++  + +  V
Sbjct: 103 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRV----TRCEEDADGV 158
Query: 143 FIHLVDGTIVKTKFLIGCDGIHSTVAWWL 171
            +   DG+      LI  DG HS +  W+
Sbjct: 159 TVWFTDGSSASGDLLIAADGSHSALRPWV 187

>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed With Fad Length = 407

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Query: 25  KRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84
           K+ G++  V E    ++  GAAIS  PN       LG      +   P+ R +  +  +G
Sbjct: 43  KQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCXAHLGXGDIXETFGGPLRRXAYRDFRSG 102
Query: 85  --ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPV 142
              TQ +        GS P  + R +L +   D     ++ F  ++    ++  + +  V
Sbjct: 103 ENXTQFSLAPLIERTGSRPCPVSRAELQREXLDYWGRDSVQFGKRV----TRCEEDADGV 158
Query: 143 FIHLVDGTIVKTKFLIGCDGIHSTVAWWL 171
            +   DG+      LI  DG HS +  W+
Sbjct: 159 TVWFTDGSSASGDLLIAADGSHSALRPWV 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	2e-42
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	3e-37
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	3e-35
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	8e-35
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	5e-34
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	1e-22
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	2e-20
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	5e-19
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	9e-19
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	3e-15
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	8e-15
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	1e-14
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	3e-14
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	6e-14
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	1e-13
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	5e-13
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	9e-12
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	9e-12
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	2e-11
3atr_A	453	Conserved archaeal protein; saturating double bond	4e-11
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	3e-10
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	9e-10
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	9e-10
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	1e-09
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	1e-09
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	1e-09
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	2e-09
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	3e-09
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	4e-09
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	5e-09
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	5e-09
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	5e-09
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	7e-09
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	9e-09
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	1e-08
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	1e-08
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	2e-08
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	2e-08
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	2e-08
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	3e-08
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	3e-08
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	5e-08
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	6e-08
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	8e-08
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	9e-08
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	9e-08
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	1e-07
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	1e-07
3dme_A	369	Conserved exported protein; structural genomics, P	1e-07
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	1e-07
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	1e-07
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	2e-07
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	2e-07
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	3e-07
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	3e-07
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	3e-07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	3e-07
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	3e-07
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	4e-07
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	7e-07
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	9e-07
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	1e-06
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	1e-06
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	2e-06
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	2e-06
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	3e-06
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	3e-06
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	4e-06
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	4e-06
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	5e-06
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	7e-06
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	8e-06
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	9e-06
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	1e-05
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	1e-05
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	2e-05
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	2e-05
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	2e-05
4fk1_A	304	Putative thioredoxin reductase; structural genomic	2e-05
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	2e-05
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	4e-05
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	4e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	5e-05
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	5e-05
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	5e-05
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	6e-05
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	6e-05
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	7e-05
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	7e-05
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	7e-05
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	7e-05
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	7e-05
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	1e-04
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	2e-04
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	2e-04
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	2e-04
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	2e-04
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	3e-04
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	4e-04
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	4e-04
2bry_A	497	NEDD9 interacting protein with calponin homology a	4e-04
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	5e-04
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	5e-04
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	6e-04
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	8e-04
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	8e-04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	8e-04
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	9e-04

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score =  145 bits (368), Expect = 2e-42
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
             ++IGAGI GL+ A+ALK+ G++  V E    ++  GAAIS  PN    +  LG+   +
Sbjct: 25  KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIM 84

Query: 67  ASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGP--RFIHRKKLLQTLADELPNGTIHF 124
            +   P+ R++  +  +G            + +G     + R +L + + D     ++ F
Sbjct: 85  ETFGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQF 144

Query: 125 SSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
             ++   +    + +  V +   DG+      LI  DG HS +
Sbjct: 145 GKRVTRCE----EDADGVTVWFTDGSSASGDLLIAADGSHSAL 183

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score =  131 bits (332), Expect = 3e-37
 Identities = 40/168 (23%), Positives = 62/168 (36%), Gaps = 14/168 (8%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS-DGLRGTGAAISFAPNAWLALDA 59
           M+     + ++G  I+GL  AL L+  GV+  V E+S   L G G  I   P     L  
Sbjct: 1   MSPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLE 60

Query: 60  LGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPN 119
            GV     S+      +   +  TG    +         +  RF     +   L +    
Sbjct: 61  QGVELDSISVPSS--SMEYVDALTGERVGSV-------PADWRFTSYDSIYGGLYELFGP 111

Query: 120 GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
              H S  +  +  Q  +    V +   DGT  +  ++IG DG  S V
Sbjct: 112 ERYHTSKCLVGLS-QDSET---VQMRFSDGTKAEANWVIGADGGASVV 155

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score =  126 bits (318), Expect = 3e-35
 Identities = 48/170 (28%), Positives = 70/170 (41%), Gaps = 13/170 (7%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEP-LVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK 65
           D++I GAGI GL+ ALAL + G+    +LE S  +R  G  I+  P A  AL  LG+   
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 65

Query: 66  LASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHR----KKLLQTLADELPNGT 121
           LA+   P + +   +             + G+      IHR      LL  + + L    
Sbjct: 66  LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQA 125

Query: 122 IHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKF----LIGCDGIHSTV 167
           +     +  I+    +    V I   DG           L+G DGIHS V
Sbjct: 126 VRTGLGVERIE----ERDGRVLIGARDGHGKPQALGADVLVGADGIHSAV 171

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score =  125 bits (315), Expect = 8e-35
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 12/171 (7%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEK--SDGLRGTGAAISFAP-NAWLAL 57
             + +K+V IIG G  GL  A  L++ G++  V E+      R  G  +     +   A+
Sbjct: 22  NLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAM 81

Query: 58  DALGVSHKLASIYPPV-NRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADE 116
              G+      +  P+   I+       +T+      +F +      I+R  L   L + 
Sbjct: 82  KKAGLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPE----INRNDLRAILLNS 137

Query: 117 LPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
           L N T+ +  K+  ++     G     +   +        +I  +G  S V
Sbjct: 138 LENDTVIWDRKLVMLE----PGKKKWTLTFENKPSETADLVILANGGMSKV 184

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score =  122 bits (309), Expect = 5e-34
 Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 19/166 (11%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK 65
           +   + G G AGL  A+ALK+ G +  + EKS  LR  GA I    N    L+ LG    
Sbjct: 12  RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDD 71

Query: 66  L--ASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGT 121
           +   S  PP     + N                +G   R + R  L   L +        
Sbjct: 72  VLQGSHTPPTYETWMHNKSVSKETF--------NGLPWRIMTRSHLHDALVNRARALGVD 123

Query: 122 IHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
           I  +S+  A D     G     + L  G +++   ++G DG+ S V
Sbjct: 124 ISVNSEAVAADP---VGR----LTLQTGEVLEADLIVGADGVGSKV 162

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 92.7 bits (231), Expect = 1e-22
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 16/175 (9%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDAL 60
           M     DV+I G GI G   A  L R G   +V+E++   R    A    P     ++A 
Sbjct: 2   MTDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAA 61

Query: 61  GV-SHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIH-------RKKLLQT 112
           G+ +          + + V + G            +       +         R+ +L+ 
Sbjct: 62  GLLAEVTRRGGRVRHELEVYHDGELLRYFN-----YSSVDARGYFILMPCESLRRLVLEK 116

Query: 113 LADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
           +  E     + F ++I A+  Q  +  +   + L DG +++ + ++G DGI S V
Sbjct: 117 IDGE-ATVEMLFETRIEAV--QRDERHAIDQVRLNDGRVLRPRVVVGADGIASYV 168

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 86.6 bits (214), Expect = 2e-20
 Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 17/185 (9%)

Query: 3   MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR---GTGAAISFAPNAWLALDA 59
           M    V IIG G AG    L L +LG +  + E+S   R   G     S  P     L+ 
Sbjct: 21  MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGE----SLLPGTMSILNR 76

Query: 60  LGVSHKLASI-YPPVNRISVTNLGTGATQETSLTGKFGDGSGPRF---IHRKKLLQTLAD 115
           LG+  K+ +  Y      +       A    S                + R++  + L D
Sbjct: 77  LGLQEKIDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLD 136

Query: 116 EL--PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI--VKTKFLIGCDGIHSTVAWWL 171
           E      T+H  + +  +D    D    V      G    V++ F+I   G    ++  L
Sbjct: 137 EARSRGITVHEETPVTDVD--LSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKL 194

Query: 172 GLSEP 176
           G+ + 
Sbjct: 195 GVRQY 199

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 82.7 bits (204), Expect = 5e-19
 Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 13/179 (7%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR---GTGAAISFAPNAWLALDALGVS 63
           D+++IG G  G   A  +   G   L+LE+    R   G                 LG++
Sbjct: 9   DLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESL---LPATVHGICAMLGLT 65

Query: 64  HKLASI-YPPVNRISVTNLGTGATQETSLTGKFGDGSGPRF-IHRKKLLQTLADE--LPN 119
            ++    +P     +              T    D  G  + + R +    L        
Sbjct: 66  DEMKRAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKG 125

Query: 120 GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI--VKTKFLIGCDGIHSTVAWWLGLSEP 176
             +    ++  +     + +  V     +G       +F++   G  + V+  +G    
Sbjct: 126 VDVRERHEVIDVL-FEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGERVY 183

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 81.8 bits (202), Expect = 9e-19
 Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 11/182 (6%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT-GAAISFAPNAWLALDA 59
           M   + DV++IGAG AG   A  + + G +  ++EK    R   G ++   P     LD 
Sbjct: 1   MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLL--PRCMEHLDE 58

Query: 60  LGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRF-IHRKKLLQTLADEL- 117
            G    + +            +      + + + +F +G    + + R    +TLADE  
Sbjct: 59  AGFLDAVKAQGFQQKF-GAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAA 117

Query: 118 -PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI--VKTKFLIGCDGIHSTVAWWLGLS 174
                + +   +  I        S   I  ++G    ++ +F+I   G    +    GL 
Sbjct: 118 RQGVDVEYEVGVTDIK--FFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGLD 175

Query: 175 EP 176
           +P
Sbjct: 176 KP 177

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 47/193 (24%), Positives = 69/193 (35%), Gaps = 20/193 (10%)

Query: 1   MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDAL 60
           M   E DV+++GAG+ GL+TA+ L R GV  LV+E+  GL     A    P     L   
Sbjct: 1   MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIG 60

Query: 61  GVSHKL--ASIYPPVNRISVTNLGTGATQE------TSLTGKFGDGSGPRFIHRKKLLQT 112
           GV+ ++  A          V  L      E       S                  L Q 
Sbjct: 61  GVADEVVRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQD 120

Query: 113 L--------ADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG---TIVKTKFLIGCD 161
                    A +   G I F +++ +      D  + V   L        ++  +L+G D
Sbjct: 121 KLEPILLAQARKHG-GAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGAD 179

Query: 162 GIHSTVAWWLGLS 174
           G  S V   LG+ 
Sbjct: 180 GNRSLVRESLGIG 192

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 70.5 bits (173), Expect = 8e-15
 Identities = 35/173 (20%), Positives = 60/173 (34%), Gaps = 12/173 (6%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
           DVV++G G  GL  A  L+  GV  LVLEK     G   A +        LD  G+  + 
Sbjct: 51  DVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRF 110

Query: 67  ASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL--PNGTIHF 124
                    +    + T       +  +         + + +    LA+        I  
Sbjct: 111 LEGTQVAKGLPFAGIFTQGLDFGLVDTRH---PYTGLVPQSRTEALLAEHAREAGAEIPR 167

Query: 125 SSKIAAIDSQTHDGSSPVFIHLVDGT---IVKTKFLIGCDGIHSTVAWWLGLS 174
             ++  +  Q  +    V + +   +    V+ ++ +GCDG  STV       
Sbjct: 168 GHEVTRLR-QDAEA---VEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLAADR 216

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 70.2 bits (171), Expect = 1e-14
 Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 29/166 (17%)

Query: 8   VVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNA-WLALDALGVSH 64
           +++IGAG AGL  A  LK+        ++EK+D     G  +           + L    
Sbjct: 3   ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLD 62

Query: 65  KL-ASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNG--T 121
                    +    + +    +            G     + R+ L+  L D+  +    
Sbjct: 63  APERLNPQFLEDFKLVHHNEPSLMS--------TGVLLCGVERRGLVHALRDKCRSQGIA 114

Query: 122 IHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV 167
           I F S +                   +  +     ++  +G++   
Sbjct: 115 IRFESPLLEHG---------------ELPLADYDLVVLANGVNHKT 145

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 69.0 bits (169), Expect = 3e-14
 Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 14/182 (7%)

Query: 4   VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVS 63
           +E DV+I+G G  G+A AL L    V  LV+E++DG        +  P +       GV+
Sbjct: 25  IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVA 84

Query: 64  HKL----ASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHR------KKLLQTL 113
            ++         P++   VT +G        L       +               L   L
Sbjct: 85  KQIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLL 144

Query: 114 ADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI--VKTKFLIGCDGIHSTVAWWL 171
           A+ +    +   S++ + + Q  D        L  G    V  ++L+ CDG  S     L
Sbjct: 145 AEAV-GERLRTRSRLDSFE-QRDDHVRATITDLRTGATRAVHARYLVACDGASSPTRKAL 202

Query: 172 GL 173
           G+
Sbjct: 203 GI 204

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 22/176 (12%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
            V+++GAG AG+  A  L+  GVE +VLE+     G    + F        D  G+  + 
Sbjct: 13  AVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRF 72

Query: 67  ASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFI-----HRKKLLQTLADELPNGT 121
             +              G      +     +G+            +  L+  A  L    
Sbjct: 73  GEVETST---------QGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLG-AD 122

Query: 122 IHFSSKIAAIDSQTHDGSSPVFIHLVD---GTIVKTKFLIGCDGIHSTVAWWLGLS 174
           I    ++ ++      G   V + +        ++  +L+GCDG  S+V    G  
Sbjct: 123 IRRGHEVLSLT-DDGAG---VTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAGFD 174

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 19/186 (10%)

Query: 7   DVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK 65
           DV+I+G G AGL  A  L     +   ++E+ +G    G A   A       +A   +  
Sbjct: 34  DVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADS 93

Query: 66  LASIYPPVNRISVTNLGTGATQETSLTGKFGDGS--GPRF----IHRKKLLQTLADELPN 119
           +      +N ++      G     +  G+  D       F    +++ ++     + + N
Sbjct: 94  ILKEACWINDVTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRN 153

Query: 120 G----TIHFSSKIAAIDSQTHDGSSPVFIHLVDGT--------IVKTKFLIGCDGIHSTV 167
                  H++ ++  +         PV + L             V+ ++++GCDG  S V
Sbjct: 154 SPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSNV 213

Query: 168 AWWLGL 173
              +G 
Sbjct: 214 RRAIGR 219

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 34/176 (19%), Positives = 60/176 (34%), Gaps = 22/176 (12%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
            V+++GAG AGL  A  L+  GV+ +VLE+     G    + F        D  G+    
Sbjct: 14  SVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAF 73

Query: 67  ASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFI-----HRKKLLQTLADELPNGT 121
             +              G      +     +G+            + +L+  A       
Sbjct: 74  GPVETST---------QGHFGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRG-AE 123

Query: 122 IHFSSKIAAIDSQTHDGSSPVFIHLVDGT---IVKTKFLIGCDGIHSTVAWWLGLS 174
           +     + A+     D    V + +        + T++++GCDG  STV    G  
Sbjct: 124 LLRGHTVRALT-DEGDH---VVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFD 175

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 61.6 bits (150), Expect = 9e-12
 Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 19/180 (10%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEK--SDGLRGTGAAISFAPNAWLALDALGVSH 64
            V IIGAG +GL     L + G++ ++LE+   D + G   A          L   GV  
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR 63

Query: 65  KLASIYPPVNRISVTNLGTGATQE-TSLTGKFGDGSGPRFI-----HRKKLLQTLADELP 118
           ++A        + +   G     +   L+G      G            + L    +   
Sbjct: 64  RMARDGLVHEGVEIAFAGQRRRIDLKRLSG------GKTVTVYGQTEVTRDLMEAREACG 117

Query: 119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI--VKTKFLIGCDGIHSTVAWWLGLSEP 176
             T++ ++++   D     G  P      DG    +   ++ GCDG H      +     
Sbjct: 118 ATTVYQAAEVRLHD---LQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERL 174

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 61.2 bits (149), Expect = 9e-12
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 3  MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43
          M   DVV+IG G +GL+    L+R G+  ++L+      G 
Sbjct: 1  MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGA 41

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 59.8 bits (145), Expect = 4e-11
 Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 40/199 (20%)

Query: 3   MVEK--DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT----GAAISFAPNAWLA 56
           M E   DV+IIG G AG + A  L R G++ L+++     R      G A+S A    L 
Sbjct: 2   MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLG 61

Query: 57  LDALGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPR--FIHRKKLLQTLA 114
           +       K   +   +N I +           S   +           ++     Q + 
Sbjct: 62  MP----YPKGEELENKINGIKL----------YSPDMQTVWTVNGEGFELNAPLYNQRVL 107

Query: 115 D-------ELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT----IVKTKFLIGCDGI 163
                   E+ + T        A+     DG     +     T     V +K ++   G 
Sbjct: 108 KEAQDRGVEIWDLT-------TAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGY 160

Query: 164 HSTVAWWLGLSEPLNVNIG 182
             +    L    P+  ++ 
Sbjct: 161 SRSFRSKLPPELPITEDLD 179

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 16/64 (25%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT-------GAA---------ISFA 50
          DVV++GAGIAGL      +  G+     E + G+ G        GA           SF+
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82

Query: 51 PNAW 54
          P   
Sbjct: 83 PELE 86

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 55.6 bits (134), Expect = 9e-10
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 2  AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43
           M    V IIGAG AG+  A+ LK  G+  +++ +   +  +
Sbjct: 1  GMQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHS 42

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 55.7 bits (135), Expect = 9e-10
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 16/68 (23%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT-------GAA---------ISFA 50
          DV+++GAG +GL     L+ LG    V+E +  + G        GA           SF+
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFS 77

Query: 51 PNAWLALD 58
                 +
Sbjct: 78 EEVLQEWN 85

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 55.5 bits (133), Expect = 1e-09
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 15/86 (17%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL---------------RGTGAAISFA 50
          K V +IGAG++GLA A  LK  G+   V E                     G        
Sbjct: 14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESE 73

Query: 51 PNAWLALDALGVSHKLASIYPPVNRI 76
           +    +D+LG+  K         R 
Sbjct: 74 GDVTFLIDSLGLREKQQFPLSQNKRY 99

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
            VV++G G AGL +A  L++ G +  VLE   
Sbjct: 12 HSVVVLGGGPAGLCSAFELQKAGYKVTVLEART 44

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
           K VVI+GAG+AGL+ A  L   G +  VLE S+
Sbjct: 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 66

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 3  MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
              +V ++G GI+GLA A  L+  G + ++LE S 
Sbjct: 14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 49

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT----GAAISFAPNAWLALDA 59
          E DVV+ G GIAG+A ++   R G + LVLE++ G  G     G  I       L    
Sbjct: 41 EADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATALAGGFIYLGGGTPLQKAC 99

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 53.6 bits (129), Expect = 4e-09
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          +  +++DV I+GAG +GLA A AL++ G+   V+E  D
Sbjct: 1  VPTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARD 38

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 53.5 bits (128), Expect = 5e-09
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 2  AMVEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSD 38
           M  K +VI+G GI GLA A   +R    +   +LE  +
Sbjct: 1  GMSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE 39

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 1  MAM-VEKDVVIIGAGIAGLATALALKRLGVEP-LVLEKSDGL 40
          M++  +  + IIGAG AGLA  + L++ G     +LE++D +
Sbjct: 1  MSISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISF 49
            V++GAG+ GL     L R G E +VLEKS  + G G   + 
Sbjct: 2  RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI-G-GRFTNL 42

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 52.9 bits (126), Expect = 9e-09
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 1  MAMVE---KDVVIIGAGIAGLATALALKRLGVEP-LVLEKSD 38
          +AM E     +VIIGAG  GL  A+ L  LG +   + E +D
Sbjct: 2  IAMAELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND 43

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43
          D V+IGAG+ G+  A  + + G++ L +E  + + GT
Sbjct: 11 DAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGT 47

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRL------GVEPLVLEKSDGLRG 42
          M+  +K VVIIG GI GLA A  +++        +E  ++E S  + G
Sbjct: 1  MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG 48

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 1  MAMVE----KDVVIIGAGIAGLATALAL-KRLGVEPLVLEKSD 38
          +AM       DV++IGAG  GL  A  L +  G   ++++ ++
Sbjct: 2  IAMTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE 44

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 5   EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG----TGAAISFAPNAW 54
              V+++GAG AG   +LA K+ G   ++++K+    G    +   ++      
Sbjct: 121 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQ 174

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 3  MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          M  K ++I+GAG +G      L   G +  ++++ D
Sbjct: 1  MKSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 36

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG----TGAAISFAPNAW 54
           DVVIIG+G AGLA A++ +  G + ++LEK     G        ++ A    
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKP 179

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 17/65 (26%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPL-VLEKSDGLRGT-------GAA---------ISF 49
          D V+IGAG  G+     L           +K+DG  GT       GA           SF
Sbjct: 10 DAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSF 69

Query: 50 APNAW 54
            +  
Sbjct: 70 DRDLL 74

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          D +++G G +GL  A  L   G + L+LE  +
Sbjct: 3  DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE 34

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA 46
          D++IIG+G  G A      R G+  L+ +        G+ 
Sbjct: 4  DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSH 43

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          + DVV++G GI+G+A A  L   G+  +VLE  D
Sbjct: 4  KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 37

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 50.0 bits (118), Expect = 9e-08
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          K ++I+GAGIAGL     L R G +  +LE + 
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANA 77

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 49.8 bits (118), Expect = 9e-08
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
                D +I+GAG AG   A  L   G   L++++  
Sbjct: 25 QESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP 62

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISF 49
            V+IGAG+ GL +A  L + G E  V E+     G G   + 
Sbjct: 2  KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT-G-GRFTNL 42

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
           D +I+G+G+ G   A  LK+L  + LV+EK +
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 3  MVEK-DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA 45
          M    D ++IGAG+ GLA A AL   G E LV E ++G+ GTG 
Sbjct: 1  MSTDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGI-GTGT 43

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 1  MAMVE-KDVVIIGAGIAGLATALALKRLGVEP-LVLEKSDGLRGTGAA 46
          MA+ +   ++I+GAG  G +TAL L R G     VL+         A 
Sbjct: 1  MAVTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAG 48

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          DVV++G G  GLATA  +   G   LVLE+  
Sbjct: 6  DVVVVGGGPVGLATAWQVAERGHRVLVLERHT 37

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 39/230 (16%), Positives = 75/230 (32%), Gaps = 62/230 (26%)

Query: 7   DVVIIGAGIAGLATALAL-----KRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALG 61
           DV+I+GAG AGL  A  L     ++  ++  +++K       G A         +L  LG
Sbjct: 10  DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLG 69

Query: 62  VSHKLASIYPPVNRISVTNLG-TGATQETSLTGKFGDGSGPRF---IHRKKLLQTLADEL 117
           ++ K+ S    ++ I++ N    G  + T        G        +H+ ++ + + D +
Sbjct: 70  LADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSI 129

Query: 118 PN--------------------------------------------------GTIHFSSK 127
                                                                       
Sbjct: 130 AEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLF 189

Query: 128 IAAIDSQTHDGSSPVFIHLVDGTIVKT---KFLIGCDGIHSTVAWWLGLS 174
            + + +Q  + ++       +   ++T   K++IGCDG HS V   LG  
Sbjct: 190 RSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFE 239

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT--GAAISFAPNAWLALD 58
          M   +K VV++G+G+ GL++AL L R G    +L +      +    A  +A   W    
Sbjct: 2  MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFM 61

Query: 59 ALGVSHKLA 67
           L    + A
Sbjct: 62 TLTDGPRQA 70

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA 45
          DV+++GAG  G+A    L + GV+ L+++  D     G+
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS 43

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG-TGAA 46
          + V+IG GI G A A  L +      + E        T AA
Sbjct: 19 EAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAA 59

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 48.3 bits (114), Expect = 3e-07
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEP-LVLEKSD 38
          ++  +K V+IIGAGIAGL  A  L + G++  LVLE  D
Sbjct: 4  VSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD 42

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 5   EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWL 55
             DVV++G+G AG + A++    G + +++EK   + G     +   NA  
Sbjct: 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAW 176

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
           DV++IG G  GL     L   G + L+LE  D + G
Sbjct: 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 48.2 bits (114), Expect = 4e-07
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEP--LVLEKSD 38
          + VV++G GI+GLA +  L R    P  +++E S+
Sbjct: 3  RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 2  AMVEKDVVIIGAGIAGLATALALKRLGVEP-LVLEKSD 38
          A V   V+++GAG++G++ A  L   G+   L+LE +D
Sbjct: 1  ATVGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 38

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 46.8 bits (110), Expect = 9e-07
 Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEK--SDGLRGTGAAISFAPNAWLALDALGVS 63
           K + I+GAG AGL   L L++  V+  V      D   G     + A NA      + + 
Sbjct: 23  KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALD 82

Query: 64  HKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGS 99
                               G  Q     G     S
Sbjct: 83  VNEWPSEEF--GYFGHYYYVGGPQPMRFYGDLKAPS 116

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISF 49
                DV+I+G G+     +  L   G + LVL+++    G  A+++ 
Sbjct: 16 FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNL 64

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPL---VLEKSDGLRGTGAAISFAPNAWLALD 58
            V+I+GAG+ G   A  L+R    PL   V +K+D   G         N     D
Sbjct: 2  AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTAD 57

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* Length = 588

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAA 46
          + + E D V+IGAG AG+  AL + + G    +L K    R  T +A
Sbjct: 3  LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSA 49

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 37/209 (17%), Positives = 65/209 (31%), Gaps = 36/209 (17%)

Query: 1   MAMVE-KDVVIIGAGIAGLATALALKR--LGVEPLVLEKSDGLRGT--------GAAISF 49
           M +   + + IIGAG +GL TA AL       +  + E+     G               
Sbjct: 1   MCLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVP 60

Query: 50  APNAWLALDALGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKL 109
           + N  L  + +     L     P+ R   TN           +  F   +  +F HR  +
Sbjct: 61  STNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQS--FKPQT-LQFPHRHTI 117

Query: 110 ---LQTLADELPNGTIHFSSKIA---------AIDSQTHDGSSPVFIHLVDGTIVKTKFL 157
               +  A  L    I  ++ +           +  +     SP+   + D   +     
Sbjct: 118 QEYQRIYAQPLLP-FIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSI----- 171

Query: 158 IGCDGIHST--VAWWLGLSEPLNVNIGCI 184
             C+G +    +    GL E      G +
Sbjct: 172 --CNGHYEVPYIPNIKGLDEYAKAVPGSV 198

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 45.7 bits (107), Expect = 3e-06
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
             V+IIG+G++GLA A  L+  G++  +LE  D + G
Sbjct: 279 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 315

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEP-LVLEKSDGLRGTGA 45
          D V++GAG+ GLA A  LK       LV++      G+G 
Sbjct: 25 DYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA-GHAPGSGD 63

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 1  MAMVEKDVVIIGAGIAGLATA-LALKRLGVEPLVLEKSD 38
                D+ ++G+G  GL  A     +L    LVLE+  
Sbjct: 3  PMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP 41

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 5   EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
              V+IIG+G++GLA A  L+  G++  +LE  D + G
Sbjct: 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKS 37
          ++V+IG GI G+  A  L + G E  V+EK 
Sbjct: 7  EIVVIGGGIVGVTIAHELAKRGEEVTVIEKR 37

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* Length = 643

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 3  MVEKDVVIIGAGIAGLATALALKRLGVEP----LVLEKSDGLR-GTGAAISFAPNAWLA 56
          +VE D++IIG G +G   A               ++EK+   R G  A    A N ++ 
Sbjct: 20 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYID 78

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39
          DV+IIG   AGL+ AL L R     L+++  + 
Sbjct: 4  DVIIIGGSYAGLSAALQLGRARKNILLVDAGER 36

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 43.9 bits (102), Expect = 9e-06
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 5   EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGV 62
             D+V+IGAG  G A A  L++L  G   L++E+       GA I  AP  W A D    
Sbjct: 36  AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATI-LAPGVWTAQDIPAG 94

Query: 63  SHKLAS 68
               A 
Sbjct: 95  QEAQAE 100

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          M   ++DVVIIGAG AG+  A+   + G   LV++ + 
Sbjct: 23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR 60

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 10/102 (9%)

Query: 1   MAMVEKDVVIIGAGIAGLATA--LALKRLGVEPLVLEKSDGLRGTGAAISFAPN------ 52
                 DV+I+GAG +GL+ A  +A  R  ++  ++E S    G         +      
Sbjct: 61  DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRK 120

Query: 53  -AWLALDALGVSHKLASIYPPVNRISVTNLGTGATQETSLTG 93
            A L L  L + ++    Y  V   +   + T  ++   L  
Sbjct: 121 PAHLFLQELEIPYEDEGDYVVVKH-AALFISTVLSKVLQLPN 161

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Length = 180

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39
          DV+++G G +GL+ AL L R G++ LVL+    
Sbjct: 3  DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS 35

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Length = 660

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG-TGAA 46
          M +   D ++IG G+AGL  A+A ++ G+  +VL      R  + AA
Sbjct: 1  MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAA 47

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 6/39 (15%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGVEP------LVLEKS 37
          E DVVI+GAG AGL+ A  LK+L  +        ++EK+
Sbjct: 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA 73

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 2  AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPN 52
          AM   D  +IGAG AGL  +L L R   +  + +              +  
Sbjct: 3  AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDN--NTNR-NRVTQNSHG 50

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAW 54
          E DV+++G G+     +  +   G + L ++++    G  ++I+     +
Sbjct: 6  EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELY 55

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 2   AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40
              +  V+I+GAG +G   A  L   G    + + ++ +
Sbjct: 386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 424

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... Length = 621

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAA 46
          D V++GAG AGL  A  L   G     + K    R  T AA
Sbjct: 20 DAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAA 60

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 2   AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAP 51
           A+ +K++ ++GAG AGLA A+     G +  + +    + G        P
Sbjct: 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIP 419

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEP-----LVLEKSDGLR 41
          D++ +G G + +A A+AL+           L L+K    R
Sbjct: 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR 71

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 8/45 (17%)

Query: 6   KDVVIIGAGIAGLATALALKRL--------GVEPLVLEKSDGLRG 42
             + I+G G  G+A    L RL        G++  + E       
Sbjct: 57  YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFL 101

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAP 51
          + DV+++G GI     +  L   G + L ++K D   G  A+++ + 
Sbjct: 11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQ 57

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 7  DVVIIGAGIAGLATALAL-KRLGVEP-LVLEKS 37
          D +I+G G  GLATA  L K  G+    VLEK 
Sbjct: 23 DAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 4  VEKDVVIIGAGIAGLATALAL-KRLGVEPLVLEKSDGLRG 42
           E DVV++GAG AGL+ A  + K   V+  ++E+S    G
Sbjct: 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG 77

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* Length = 540

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          +     DV+IIG+G AGL+ AL L     + +VL K  
Sbjct: 4  LPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGP 40

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 41.3 bits (96), Expect = 7e-05
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 1   MAMVEKDVVIIGAGIAGLATA--LALKRLGVEPLVLEKSDGLRG 42
            A  E D+VI+GAG  GL+ A  L+  R  +   ++E      G
Sbjct: 75  DAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG 118

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 2   AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40
              +  V+++GAG +GL  A AL   G + ++ E    L
Sbjct: 388 KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL 426

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40
          D ++IGAGIAG +T   L   G   +VLE+    
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHGRV-VVLEREAQP 43

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 3  MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
           +  DV++IG G +GL  A+     G   L+L+K +
Sbjct: 24 AMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN 59

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          M+    + +IIGAG AGL  A  L +LG    V +   
Sbjct: 1  MSQ-YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 41/196 (20%)

Query: 3   MVEKDVVIIGAGIAGLATALALK------RLGVEPLVLEKSDGLRGTGAAISFAPNAWLA 56
           M  + + I+GAG +G+A   A +          E +  EK     G      +       
Sbjct: 1   MATR-IAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQ-----WNYTWRTG 54

Query: 57  LDALGVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGD--------GSGPRFIHRKK 108
           LD  G     +S+Y  +     +N      +       F D             +  R+ 
Sbjct: 55  LDENGEPVH-SSMYRYL----WSNGPKECLE-------FADYTFDEHFGKPIASYPPREV 102

Query: 109 L---LQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIH-LVDGTIVKTKF--LIGCD 161
           L   ++   ++      I F++ +  ++      +  V +      TI   +F  ++ C 
Sbjct: 103 LWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162

Query: 162 GIHST--VAWWLGLSE 175
           G  ST  V  + G  +
Sbjct: 163 GHFSTPYVPEFEGFEK 178

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} Length = 472

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 8  VVIIGAGIAGLATALALKRLGVEPLVLEKS 37
          + IIG+GIAGL+  +AL+R G +  ++ K 
Sbjct: 2  IYIIGSGIAGLSAGVALRRAGKKVTLISKR 31

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 8  VVIIGAGIAGLATALALKRLGVEPLVLEK 36
          VV+IGAG+ GL+TAL +       L    
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLD 31

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40
               IIG GI G+  A A+   G    +    +  
Sbjct: 147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP 181

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39
          DV+I+G G A    AL   R  ++ LV+ ++ G
Sbjct: 17 DVIIVGLGPAAYGAALYSARYMLKTLVIGETPG 49

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD---GL 40
             V +IGAG AGLA A  L+  G E  V ++ D   GL
Sbjct: 123 LSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGL 160

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497

 Score = 39.4 bits (91), Expect = 4e-04
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSH 64
             +++GAG  GL  A+ L  LG   +++EK          +   P     L ALG   
Sbjct: 94  KCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR-HNVLHLWPFTIHDLRALGAKK 150

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Length = 549

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 2   AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41
             + +  ++IG G  GL   L L ++G  P+++E+   +R
Sbjct: 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVR 143

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEK 36
          DVVI+GAG AG + A+   R G    +L+K
Sbjct: 18 DVVIVGAGAAGFSAAVYAARSGFSVAILDK 47

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* Length = 602

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRG-TGAA 46
          M   + D+ I+GAG AGL  A+A  +     +  ++ K   +R  T AA
Sbjct: 1  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAA 49

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Length = 662

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 4  VEKDVVIIGAGIAGLATALALKRLGVEPLVLEK 36
             D++++G G+     A    R   +     K
Sbjct: 21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAK 53

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
          MA    DV+I+GAG  GL     +   G+    ++      G
Sbjct: 1  MAADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGG 42

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439

 Score = 37.9 bits (89), Expect = 9e-04
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLV 33
          K+VVIIG G+ GL+        GV P V
Sbjct: 6  KNVVIIGLGLTGLSCVDFFLARGVTPRV 33

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.95
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.94
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.94
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.94
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.94
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.94
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.94
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.93
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.93
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.93
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.93
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.93
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.92
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.92
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.92
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.92
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.91
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.9
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.9
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.9
3atr_A	453	Conserved archaeal protein; saturating double bond	99.85
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.84
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.84
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.84
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.83
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.82
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.79
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.78
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.77
3dme_A	369	Conserved exported protein; structural genomics, P	99.77
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.75
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.75
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.75
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.75
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.74
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.74
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.73
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.73
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.73
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.73
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.72
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.72
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.72
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.71
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.7
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.7
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.7
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.68
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.68
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.68
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.68
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.68
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.68
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.68
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.67
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.66
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.66
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.65
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.65
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.64
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.64
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.64
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.63
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.63
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.63
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.62
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.62
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.61
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.61
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.6
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.6
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.6
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.6
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.59
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.58
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.58
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.58
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.57
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.57
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.56
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.56
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.56
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.56
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.54
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.54
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.54
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.53
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.53
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.53
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.53
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.51
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.51
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.5
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.49
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.49
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.48
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.47
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.46
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.45
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.45
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.45
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.44
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.44
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.44
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.43
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.43
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.42
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.42
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.42
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.41
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.41
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.4
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.4
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.4
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.4
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.36
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.36
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.36
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.35
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.34
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.34
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.33
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.32
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.32
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.32
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.31
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.3
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.3
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.29
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.29
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.28
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.28
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.27
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.27
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.27
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.27
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.26
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.26
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.25
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.25
4dna_A	463	Probable glutathione reductase; structural genomic	99.25
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.25
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.25
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.22
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.22
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.21
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.21
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.21
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.21
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.21
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.2
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.2
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.18
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.17
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.17
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.17
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.16
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.16
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.16
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.15
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.15
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.15
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.14
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.14
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.13
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.13
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.1
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.09
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.08
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.07
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.06
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.05
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.04
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.02
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.01
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.99
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.99
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.98
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.98
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.98
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.97
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.97
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.96
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.95
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.95
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.94
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.93
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.9
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.9
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.9
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.9
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.88
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.87
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.86
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.86
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.85
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.85
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.84
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.84
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.84
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.84
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.83
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.82
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.82
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.82
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.81
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.79
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.78
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.78
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.78
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.77
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.77
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.77
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.76
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.75
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.74
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.74
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.74
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.74
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.74
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.71
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.71
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.7
4dna_A	463	Probable glutathione reductase; structural genomic	98.69
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.69
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.69
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.69
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.68
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.68
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.65
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.64
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.63
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.62
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.61
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.61
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.61
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.61
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.6
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.59
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.59
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.59
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.58
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.56
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.55
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.54
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.54
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.54
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.53
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.53
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.5
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.49
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.49
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.49
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.49
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.49
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.45
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.45
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.44
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.42
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.42
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.42
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.42
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.42
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.42
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.39
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.37
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.35
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.34
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	98.34
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.34
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.33
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.32
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.3
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.29
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.27
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.26
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.26
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.21
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.21
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.21
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	98.18
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.17
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.15
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.11
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.1
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.05
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.04
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.03
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.75
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.74
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.73
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.72
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.71
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.67
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.64
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.63
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.6
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.6
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.6
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.6
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.51
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.48
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.47
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.45
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.43
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.43
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.39
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.37
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.36
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	97.33
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.3
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.3
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.23
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.23
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.12
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.12
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.09
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.05
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.05
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.02
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.0
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.99
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.98
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.96
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.94
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.94
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.9
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.9
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.89
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.86
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.86
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.84
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.84
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.84
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.81
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.79
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.78
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.75
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.74
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.74
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.71
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.71
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.71
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.67
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.63
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.63
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.63
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.61
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.6
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.58
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.58
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.58
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.58
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.57
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.57
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.57
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.56
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.56
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.56
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.56
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.55
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.52
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.52
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.52
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.51
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.49
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.48
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.48
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.47
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.46
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.45
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.44
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.43
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.43
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.43
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.41
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	96.39
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.35
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.33
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.29
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.28
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.27
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.26
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.24
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.22
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.21
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.21
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.21
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.21
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.2
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.2
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.2
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.19
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.19
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.19
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.19
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.18
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.18
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.17
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.16
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.13
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.12
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.11
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.09
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.09
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.09
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	96.09
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.07
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.07
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.07
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	96.07
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.05
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.05
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.05
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.05
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.02
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	96.01
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.01
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	96.0
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	95.99
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.98
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.97
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	95.97
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	95.96
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.96
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.94
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	95.94
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.93
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.92
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.91
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.9
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	95.9
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.89
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.87
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.85
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.85
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.84
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.82
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.81
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	95.8
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	95.8
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.79
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	95.79
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.78
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.76
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	95.75
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.74
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.74
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	95.74
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.73
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.72
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.72
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.72
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.71
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.69
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	95.69
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.68
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.67
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.66
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.65
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	95.64
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.63
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.61
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.61
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.6
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	95.59
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.59
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	95.58
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	95.57
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.55
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.54
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.53
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	95.52
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.52
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	95.51
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.5
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.49
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.47
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	95.47
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	95.46
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.45
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.42
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.42
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.39
2pbz_A	320	Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt	95.39
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.39
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.38
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.38
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	95.38
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	95.37
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	95.37
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.35
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	95.34
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	95.33
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.32
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.32
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.29
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.29
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	95.28
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.27

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.95  E-value=8.7e-28  Score=179.29  Aligned_cols=175  Identities=26%  Similarity=0.458  Sum_probs=141.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      +.+||+|||||++|+++|+.|+++|++|+|+|+.+.+...+++..+.+.+.+.++.+|+++.+.....+...+.++....
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            46899999999999999999999999999999998888888999999999999999999999998888888888877653


Q ss_pred             Cce-eeeecCCCC-CCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           84 GAT-QETSLTGKF-GDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        84 ~~~-~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                      +.. ..+.+.... ..+.....+++..+.+.|.+.+..++++++++|++++..+   +. +.|.+.+|+++.||+||+|+
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~a~~vV~Ad  177 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDA---DG-VTVWFTDGSSASGDLLIAAD  177 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEET---TE-EEEEETTSCEEEESEEEECC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecC---Cc-EEEEEcCCCEEeeCEEEECC
Confidence            332 333322100 1123456889999999999998668899999999999876   45 88999999999999999999


Q ss_pred             CcchHHHhhh-CCC-CCccccee
Q 030042          162 GIHSTVAWWL-GLS-EPLNVNIG  182 (184)
Q Consensus       162 G~~s~~~~~~-~~~-~~~~~~~~  182 (184)
                      |.+|.+|+.+ +.. .+.+.++.
T Consensus       178 G~~S~vr~~l~~~~~~~~~~~~~  200 (407)
T 3rp8_A          178 GSHSALRPWVLGFTPQRRYAGYV  200 (407)
T ss_dssp             CTTCSSHHHHHSSCCCCEEEEEE
T ss_pred             CcChHHHHHhcCCCCCCcccCcE
Confidence            9999999988 765 45565544

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.94  E-value=6.8e-26  Score=168.58  Aligned_cols=166  Identities=26%  Similarity=0.341  Sum_probs=130.7

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC-CCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEE
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL-RGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVT   79 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (184)
                      |+|..+||+|||||++|+++|+.|++.|++|+|+|+.+.+ ...+.+..+.+.+.+.++.+|+++  .....+...+.+.
T Consensus         1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~--~~~~~~~~~~~~~   78 (397)
T 2vou_A            1 MSPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL--DSISVPSSSMEYV   78 (397)
T ss_dssp             -CCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG--GGTCBCCCEEEEE
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc--ccccccccceEEE
Confidence            7777899999999999999999999999999999998764 445788889999999999999987  3444455555555


Q ss_pred             ecCCCce-eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042           80 NLGTGAT-QETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI  158 (184)
Q Consensus        80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI  158 (184)
                      ....+.. ......        .....+..+.+.|.+.+++++++++++|++++..+   +. +.|.+.+|+++.||+||
T Consensus        79 ~~~~g~~~~~~~~~--------~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~ad~vV  146 (397)
T 2vou_A           79 DALTGERVGSVPAD--------WRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDS---ET-VQMRFSDGTKAEANWVI  146 (397)
T ss_dssp             ETTTCCEEEEEECC--------CCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECS---SC-EEEEETTSCEEEESEEE
T ss_pred             ecCCCCccccccCc--------ccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecC---CE-EEEEECCCCEEECCEEE
Confidence            5412222 222211        12467788999998887789999999999998875   44 88999999899999999


Q ss_pred             ecCCcchHHHhhhCCC-CCcccce
Q 030042          159 GCDGIHSTVAWWLGLS-EPLNVNI  181 (184)
Q Consensus       159 ~a~G~~s~~~~~~~~~-~~~~~~~  181 (184)
                      +|+|.+|.+|+.++ + .|.|.++
T Consensus       147 ~AdG~~S~vr~~~~-~~~~~~~~~  169 (397)
T 2vou_A          147 GADGGASVVRKRLL-GIEPTYAGY  169 (397)
T ss_dssp             ECCCTTCHHHHHHH-CCCCEEEEE
T ss_pred             ECCCcchhHHHHhc-cCCCCccce
Confidence            99999999999887 4 3555554

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.94  E-value=7.4e-26  Score=168.45  Aligned_cols=170  Identities=20%  Similarity=0.225  Sum_probs=131.7

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |++.++||+|||||++|+++|+.|+++|++|+|+|+.+.+...+++..+.+.+.+.++.+++++.+.....+...+.++.
T Consensus         2 M~~~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   81 (399)
T 2x3n_A            2 MTDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVY   81 (399)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEE
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEe
Confidence            55557899999999999999999999999999999988776678889999999999999999999887666666666655


Q ss_pred             cCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcce--EEEEecCcEEEee
Q 030042           81 LGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPV--FIHLVDGTIVKTK  155 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~--~v~~~~g~~~~a~  155 (184)
                      ........+...... .......+++..+.+.|.+.+.   +++++++++|++++..+   +. +  .|.+.+|+++.||
T Consensus        82 ~~g~~~~~~~~~~~~-~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~---~~-v~g~v~~~~g~~~~ad  156 (399)
T 2x3n_A           82 HDGELLRYFNYSSVD-ARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDE---RH-AIDQVRLNDGRVLRPR  156 (399)
T ss_dssp             ETTEEEEEEETTSSC-GGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECT---TS-CEEEEEETTSCEEEEE
T ss_pred             CCCCEEEecchHHhc-ccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcC---Cc-eEEEEEECCCCEEECC
Confidence            432222333332111 0112357889999999998875   57999999999998875   44 6  8888888899999


Q ss_pred             EEEecCCcchHHHhhhCCCC
Q 030042          156 FLIGCDGIHSTVAWWLGLSE  175 (184)
Q Consensus       156 ~vI~a~G~~s~~~~~~~~~~  175 (184)
                      +||+|+|.+|.+++.++.+.
T Consensus       157 ~vV~AdG~~s~vr~~lg~~~  176 (399)
T 2x3n_A          157 VVVGADGIASYVRRRLLDID  176 (399)
T ss_dssp             EEEECCCTTCHHHHHTSCCC
T ss_pred             EEEECCCCChHHHHHhCCCc
Confidence            99999999999999998764

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.94  E-value=2.1e-25  Score=170.14  Aligned_cols=164  Identities=21%  Similarity=0.304  Sum_probs=128.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      +++||+||||||+|+++|+.|+++|++|+|||+.+.+...+++..+.+.+.+.++.+|+++.+... .+.....  . ..
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~--~-~~   86 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPV-ETSTQGH--F-GG   86 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSC-CEESEEE--E-TT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhc-cccccce--e-cc
Confidence            568999999999999999999999999999999988877889999999999999999999887654 2211111  1 11


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCc---EEEeeEEE
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT---IVKTKFLI  158 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~---~~~a~~vI  158 (184)
                         ..+.+.......+....+++..+.+.|.+.+.  +++++++++|++++.++   +. ++|.+.++.   +++||+||
T Consensus        87 ---~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~~~a~~vV  159 (499)
T 2qa2_A           87 ---RPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEG---DH-VVVEVEGPDGPRSLTTRYVV  159 (499)
T ss_dssp             ---EEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECS---SC-EEEEEECSSCEEEEEEEEEE
T ss_pred             ---eecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---CE-EEEEEEcCCCcEEEEeCEEE
Confidence               12222211111223467889999999888774  79999999999999875   44 778877764   79999999


Q ss_pred             ecCCcchHHHhhhCCCCCcc
Q 030042          159 GCDGIHSTVAWWLGLSEPLN  178 (184)
Q Consensus       159 ~a~G~~s~~~~~~~~~~~~~  178 (184)
                      +|+|.+|.+|+.++++.+..
T Consensus       160 gADG~~S~VR~~lg~~~~~~  179 (499)
T 2qa2_A          160 GCDGGRSTVRKAAGFDFPGT  179 (499)
T ss_dssp             ECCCTTCHHHHHTTCCCCEE
T ss_pred             EccCcccHHHHHcCCCCCCC
Confidence            99999999999999876543

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.94  E-value=6.5e-26  Score=174.50  Aligned_cols=177  Identities=26%  Similarity=0.342  Sum_probs=134.6

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccce---E
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRI---S   77 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~   77 (184)
                      |++.++||+|||||++|+++|+.|+++|++|+||||.+.....+++..+.+.+.+.++.+|+++.+.....+....   .
T Consensus         1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~   80 (535)
T 3ihg_A            1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFV   80 (535)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCE
T ss_pred             CCCccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCccccccee
Confidence            7767899999999999999999999999999999999888888899999999999999999999998876654433   1


Q ss_pred             --EEecCCCce-eee--ecCC----CCCCCC-CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCC-CCcceEE
Q 030042           78 --VTNLGTGAT-QET--SLTG----KFGDGS-GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHD-GSSPVFI  144 (184)
Q Consensus        78 --~~~~~~~~~-~~~--~~~~----~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~-~~~~~~v  144 (184)
                        ......+.. ...  .+..    .....+ ....+++..+...|.+.+.  +++++++++|++++.+++. ..+ +.+
T Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~-v~v  159 (535)
T 3ihg_A           81 IRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAG-VTA  159 (535)
T ss_dssp             EEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSE-EEE
T ss_pred             eeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCcccc-EEE
Confidence              111112211 111  1110    001112 3557788899888888774  7999999999999987610 015 777


Q ss_pred             EEecC---cEEEeeEEEecCCcchHHHhhhCCCCCcc
Q 030042          145 HLVDG---TIVKTKFLIGCDGIHSTVAWWLGLSEPLN  178 (184)
Q Consensus       145 ~~~~g---~~~~a~~vI~a~G~~s~~~~~~~~~~~~~  178 (184)
                      .+.++   .+++||+||+|+|.+|.+|+.+|++.+..
T Consensus       160 ~~~~~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~  196 (535)
T 3ihg_A          160 RLAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGH  196 (535)
T ss_dssp             EEEETTEEEEEEEEEEEECCCTTCHHHHHTTCCEEEE
T ss_pred             EEEcCCCeEEEEeCEEEECCCCcchHHHHcCCCcCCC
Confidence            77776   68999999999999999999998876443

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.94  E-value=2.5e-25  Score=166.22  Aligned_cols=166  Identities=27%  Similarity=0.365  Sum_probs=128.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVE-PLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      ..+||+|||||++|+++|+.|++.|++ |+|+|+.+.+...+++..+.+.+.+.++.+|+++.+.....+...+.+....
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~   82 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQS   82 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCC
Confidence            468999999999999999999999999 9999999887778899999999999999999999988776666655555433


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---C-CeeeeCceEEEEeccCCCCCcceEEEEec---C--cEEE
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---N-GTIHFSSKIAAIDSQTHDGSSPVFIHLVD---G--TIVK  153 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~-~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g--~~~~  153 (184)
                      .....................+++..+.+.|.+.+.   + ++++++++|+++.. +   ++ +.+.+.+   |  .++.
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~---~~-v~v~~~~~~~g~~~~~~  157 (410)
T 3c96_A           83 GATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-R---DG-RVLIGARDGHGKPQALG  157 (410)
T ss_dssp             SCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-E---TT-EEEEEEEETTSCEEEEE
T ss_pred             CCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-C---Cc-cEEEEecCCCCCceEEe
Confidence            222122111111111223467889999988888763   3 58999999999988 4   33 6677655   7  5799


Q ss_pred             eeEEEecCCcchHHHhhhCCC
Q 030042          154 TKFLIGCDGIHSTVAWWLGLS  174 (184)
Q Consensus       154 a~~vI~a~G~~s~~~~~~~~~  174 (184)
                      ||+||+|+|.+|.+|+.++..
T Consensus       158 ad~vV~AdG~~S~vR~~l~~~  178 (410)
T 3c96_A          158 ADVLVGADGIHSAVRAHLHPD  178 (410)
T ss_dssp             ESEEEECCCTTCHHHHHHCTT
T ss_pred             cCEEEECCCccchhHHHhcCC
Confidence            999999999999999988643

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.94  E-value=1.8e-25  Score=170.52  Aligned_cols=164  Identities=20%  Similarity=0.299  Sum_probs=127.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      +++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.+.+.+.++.+|+++.+... .......+   ..
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~---~~   85 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV-ETSTQGHF---GG   85 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC-CBCCEEEE---TT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc-cccccccc---cc
Confidence            578999999999999999999999999999999988877889999999999999999999888654 22211111   11


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCc---EEEeeEEE
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT---IVKTKFLI  158 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~---~~~a~~vI  158 (184)
                         ..+.+.......+....+++..+.+.|.+.+.  +++++++++|++++.++   +. +++.+.++.   +++||+||
T Consensus        86 ---~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~~~a~~vV  158 (500)
T 2qa1_A           86 ---LPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDG---AG-VTVEVRGPEGKHTLRAAYLV  158 (500)
T ss_dssp             ---EEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEET---TE-EEEEEEETTEEEEEEESEEE
T ss_pred             ---eecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcC---Ce-EEEEEEcCCCCEEEEeCEEE
Confidence               12222211111123467888899988888774  79999999999999876   44 777777764   79999999


Q ss_pred             ecCCcchHHHhhhCCCCCcc
Q 030042          159 GCDGIHSTVAWWLGLSEPLN  178 (184)
Q Consensus       159 ~a~G~~s~~~~~~~~~~~~~  178 (184)
                      +|+|.+|.+|+.++++.+..
T Consensus       159 gADG~~S~VR~~lg~~~~~~  178 (500)
T 2qa1_A          159 GCDGGRSSVRKAAGFDFPGT  178 (500)
T ss_dssp             ECCCTTCHHHHHTTCCCCEE
T ss_pred             ECCCcchHHHHHcCCCcCCC
Confidence            99999999999999876543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.93  E-value=6.1e-25  Score=163.51  Aligned_cols=170  Identities=18%  Similarity=0.254  Sum_probs=128.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC--ccceeeecc-cHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG--TGAAISFAP-NAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      +.+||+|||||++|+++|+.|++.|++|+|+|+.+.+..  .+.+..+.+ ...+.++.+|+++.+.....+... .++.
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~-~~~~  103 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGV-NIAD  103 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCE-EEEC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccce-EEEC
Confidence            468999999999999999999999999999999876543  344555554 468899999999998776555444 3333


Q ss_pred             cCCCceeeeec--CCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042           81 LGTGATQETSL--TGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI  158 (184)
Q Consensus        81 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI  158 (184)
                      . .+.. ...+  ...  .......+++..+.+.|.+.+++++++++++|++++..+   +. +.|.+.+|+++.||+||
T Consensus       104 ~-~g~~-~~~~~~~~~--~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~ad~vV  175 (398)
T 2xdo_A          104 E-KGNI-LSTKNVKPE--NRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGK---KK-WTLTFENKPSETADLVI  175 (398)
T ss_dssp             S-SSEE-EEECCCGGG--TTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECS---SS-EEEEETTSCCEEESEEE
T ss_pred             C-CCCc-hhhcccccc--CCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECC---CE-EEEEECCCcEEecCEEE
Confidence            2 2221 1111  110  111233688999999999998778899999999998875   44 88999999889999999


Q ss_pred             ecCCcchHHHhhhCCCCCccccee
Q 030042          159 GCDGIHSTVAWWLGLSEPLNVNIG  182 (184)
Q Consensus       159 ~a~G~~s~~~~~~~~~~~~~~~~~  182 (184)
                      +|+|.+|.+|+.++...|.|.+..
T Consensus       176 ~AdG~~S~vR~~l~~~~~~~~g~~  199 (398)
T 2xdo_A          176 LANGGMSKVRKFVTDTEVEETGTF  199 (398)
T ss_dssp             ECSCTTCSCCTTTCCCCCEEEEEE
T ss_pred             ECCCcchhHHhhccCCCceEcceE
Confidence            999999999998876667776544

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.93  E-value=2.2e-25  Score=172.19  Aligned_cols=169  Identities=22%  Similarity=0.209  Sum_probs=128.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      +++||+|||||++|+++|+.|+++|++|+|||+.+.+...+++..+.+.+.+.++.+|+++.+...........  . ..
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~--~-~~  124 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLP--F-AG  124 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCC--B-TT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCce--e-CC
Confidence            35899999999999999999999999999999998888888999999999999999999999877654433110  0 11


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE--ecC-cEEEeeEEE
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL--VDG-TIVKTKFLI  158 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~~g-~~~~a~~vI  158 (184)
                      .....+.+.......+....+++..+.+.|.+.+.  +++++++++|++++.++   ++ +.|.+  .+| ++++||+||
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~---~~-v~v~~~~~~G~~~~~a~~vV  200 (570)
T 3fmw_A          125 IFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDA---EA-VEVTVAGPSGPYPVRARYGV  200 (570)
T ss_dssp             BCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCS---SC-EEEEEEETTEEEEEEESEEE
T ss_pred             cccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC---Ce-EEEEEEeCCCcEEEEeCEEE
Confidence            00012222222112224456888899988888775  89999999999999876   44 66666  677 689999999


Q ss_pred             ecCCcchHHHhhhCCCCCccc
Q 030042          159 GCDGIHSTVAWWLGLSEPLNV  179 (184)
Q Consensus       159 ~a~G~~s~~~~~~~~~~~~~~  179 (184)
                      +|+|.+|.+|+.++++.+..+
T Consensus       201 ~ADG~~S~vR~~lGi~~~~~~  221 (570)
T 3fmw_A          201 GCDGGRSTVRRLAADRFPGTE  221 (570)
T ss_dssp             ECSCSSCHHHHHTTCCCCCCC
T ss_pred             EcCCCCchHHHHcCCCCccce
Confidence            999999999999998766443

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.93  E-value=7e-25  Score=164.16  Aligned_cols=172  Identities=22%  Similarity=0.286  Sum_probs=129.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCcc-ceEEE
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVN-RISVT   79 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   79 (184)
                      |+++++||+|||||++|+++|+.|+++|++|+|+|+.+.+. .+.+..+.+.+...++.+++++.+........ ...+.
T Consensus         1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~-~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   79 (421)
T 3nix_A            1 MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR-FVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFV   79 (421)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC-CCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEE
T ss_pred             CCCccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC-CcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEE
Confidence            66667999999999999999999999999999999986543 35677788999999999999988877654333 23332


Q ss_pred             ecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCc--EEEe
Q 030042           80 NLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT--IVKT  154 (184)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~--~~~a  154 (184)
                      +  ......+.+........ ..+.+++..+.+.|.+.+.  |++++++++|+++...++  ...+.+.+.+|+  ++.|
T Consensus        80 ~--~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~--~~~v~v~~~~g~~~~~~a  155 (421)
T 3nix_A           80 R--GKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGT--DSVTTIEDINGNKREIEA  155 (421)
T ss_dssp             E--TTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETT--EEEEEEEETTSCEEEEEE
T ss_pred             e--CCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC--EEEEEEEcCCCCEEEEEc
Confidence            2  12223444443322222 4568899999999988774  899999999999988752  222566777887  7999


Q ss_pred             eEEEecCCcchHHHhhhCCCCCc
Q 030042          155 KFLIGCDGIHSTVAWWLGLSEPL  177 (184)
Q Consensus       155 ~~vI~a~G~~s~~~~~~~~~~~~  177 (184)
                      |+||+|+|.+|.+++.++.+.|.
T Consensus       156 ~~vV~A~G~~s~l~~~~g~~~~~  178 (421)
T 3nix_A          156 RFIIDASGYGRVIPRMFGLDKPS  178 (421)
T ss_dssp             EEEEECCGGGCHHHHHTTCEECC
T ss_pred             CEEEECCCCchhhHHhcCCCCCC
Confidence            99999999999999998876543

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.93  E-value=1.5e-24  Score=167.26  Aligned_cols=169  Identities=23%  Similarity=0.338  Sum_probs=129.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccc---eEEEe
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNR---ISVTN   80 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   80 (184)
                      .++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.+.+.+.++.+|+++.+.....+...   ..+..
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~  104 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVT  104 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEES
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEec
Confidence            458999999999999999999999999999999988888888999999999999999999999877665532   12221


Q ss_pred             cCCCce-eeeecCCCC-----CCCC-CCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec---C-
Q 030042           81 LGTGAT-QETSLTGKF-----GDGS-GPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---G-  149 (184)
Q Consensus        81 ~~~~~~-~~~~~~~~~-----~~~~-~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g-  149 (184)
                      ...+.. ..+.+....     ...+ ....+++..+.+.|.+.+... ++++++|++++.++   +. +++.+.+   | 
T Consensus       105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-v~~~~~v~~~~~~~---~~-v~v~~~~~~~G~  179 (549)
T 2r0c_A          105 RVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-LRTRSRLDSFEQRD---DH-VRATITDLRTGA  179 (549)
T ss_dssp             SBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-EECSEEEEEEEECS---SC-EEEEEEETTTCC
T ss_pred             cCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-cccCcEEEEEEEeC---CE-EEEEEEECCCCC
Confidence            112221 223222110     0111 346788889999998887644 99999999998875   44 6666655   6 


Q ss_pred             -cEEEeeEEEecCCcchHHHhhhCCCCCc
Q 030042          150 -TIVKTKFLIGCDGIHSTVAWWLGLSEPL  177 (184)
Q Consensus       150 -~~~~a~~vI~a~G~~s~~~~~~~~~~~~  177 (184)
                       .++.||+||+|+|.+|.+|+.++++.+.
T Consensus       180 ~~~i~a~~vVgADG~~S~vR~~lg~~~~g  208 (549)
T 2r0c_A          180 TRAVHARYLVACDGASSPTRKALGIDAPP  208 (549)
T ss_dssp             EEEEEEEEEEECCCTTCHHHHHHTCCCCB
T ss_pred             EEEEEeCEEEECCCCCcHHHHHcCCCCCC
Confidence             4799999999999999999999887654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.93  E-value=8.9e-25  Score=161.65  Aligned_cols=165  Identities=24%  Similarity=0.319  Sum_probs=132.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      |..+||+|||||++|+++|+.|++.|++|+|+|+.+.+...+++..+.+.+.+.++.+|+++.+.....+...+.+... 
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-   87 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMH-   87 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEET-
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeC-
Confidence            3468999999999999999999999999999999988877789999999999999999999999887777777776664 


Q ss_pred             CCce-eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042           83 TGAT-QETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG  159 (184)
Q Consensus        83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~  159 (184)
                       +.. ....+.     +.....+++..+.+.|.+.+.  +++++++++|++++. +  +    .|.+.+|+++.||+||+
T Consensus        88 -g~~~~~~~~~-----~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~--~----~v~~~~g~~~~ad~vV~  154 (379)
T 3alj_A           88 -NKSVSKETFN-----GLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-V--G----RLTLQTGEVLEADLIVG  154 (379)
T ss_dssp             -TEEEEEECGG-----GCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-T--T----EEEETTSCEEECSEEEE
T ss_pred             -CceeeeccCC-----CCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C--C----EEEECCCCEEEcCEEEE
Confidence             322 222221     223568899999998888774  789999999999987 3  3    46677888899999999


Q ss_pred             cCCcchHHHhhhCCCC-Ccccce
Q 030042          160 CDGIHSTVAWWLGLSE-PLNVNI  181 (184)
Q Consensus       160 a~G~~s~~~~~~~~~~-~~~~~~  181 (184)
                      |+|.+|.+++.++... +.+.++
T Consensus       155 AdG~~s~vr~~l~~~~~~~~~~~  177 (379)
T 3alj_A          155 ADGVGSKVRDSIGFKQDRWVSKD  177 (379)
T ss_dssp             CCCTTCHHHHHHCCCEEEEEEEE
T ss_pred             CCCccHHHHHHhcCCCCcCcCCc
Confidence            9999999999887632 344443

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.92  E-value=6.3e-24  Score=166.28  Aligned_cols=172  Identities=18%  Similarity=0.264  Sum_probs=131.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHh-CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC-
Q 030042            5 EKDVVIIGAGIAGLATALALKR-LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG-   82 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (184)
                      ++||+||||||+|+++|+.|++ .|++|+||||.+.+...+++..+.+.+++.++.+|+++.+.....+...+.++... 
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~  111 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDP  111 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCC
Confidence            5899999999999999999999 99999999999888888899999999999999999999988776666666665532 


Q ss_pred             --CCcee---eeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CC--eeeeCceEEEEeccCC-CCCcceEEEEe-----
Q 030042           83 --TGATQ---ETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NG--TIHFSSKIAAIDSQTH-DGSSPVFIHLV-----  147 (184)
Q Consensus        83 --~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~--~i~~~~~v~~~~~~~~-~~~~~~~v~~~-----  147 (184)
                        .+...   .+.........+....+++..+.+.|.+.+.  ++  +++++++|++++.+++ ++.. +.|.+.     
T Consensus       112 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~-v~v~~~~~~~~  190 (639)
T 2dkh_A          112 GQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYP-VTVTLERCDAA  190 (639)
T ss_dssp             TSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCC-EEEEEEECSGG
T ss_pred             CCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCC-EEEEEEecccc
Confidence              12221   1221111111224457788888888888774  54  8999999999987652 1123 666654     


Q ss_pred             -cC--cEEEeeEEEecCCcchHHHhhhCCCCCc
Q 030042          148 -DG--TIVKTKFLIGCDGIHSTVAWWLGLSEPL  177 (184)
Q Consensus       148 -~g--~~~~a~~vI~a~G~~s~~~~~~~~~~~~  177 (184)
                       +|  ++++||+||+|+|.+|.+|+.++++.+.
T Consensus       191 ~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g  223 (639)
T 2dkh_A          191 HAGQIETVQARYVVGCDGARSNVRRAIGRQLVG  223 (639)
T ss_dssp             GTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEE
T ss_pred             CCCCeEEEEeCEEEECCCcchHHHHHhCCCCCC
Confidence             45  5799999999999999999999887643

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.92  E-value=2.1e-24  Score=159.98  Aligned_cols=166  Identities=17%  Similarity=0.244  Sum_probs=114.4

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc-cceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT-GAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      |++|||+||||||+|+++|+.|+++|++|+|+||.+.++.. .++..+++.   .++.+++.........+.....+..+
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~---~l~~l~~~~~~~~~~~~~~~~~~~~~   78 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKG---ILNEADIKADRSFIANEVKGARIYGP   78 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETH---HHHHTTCCCCTTTEEEEESEEEEECT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHH---HHHHcCCCchhhhhhcccceEEEEeC
Confidence            57899999999999999999999999999999998776543 234455543   45566554332222223344455444


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE-ecC--cEEEeeE
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDG--TIVKTKF  156 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g--~~~~a~~  156 (184)
                      ............  ......+.++|..+.+.|.+.+.  |++++++++|+++...+  +.. ..+.. .++  .+++||+
T Consensus        79 ~~~~~~~~~~~~--~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~--~~~-~~v~~~~~~~~~~~~a~~  153 (397)
T 3oz2_A           79 SEKRPIILQSEK--AGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKEN--GKV-AGAKIRHNNEIVDVRAKM  153 (397)
T ss_dssp             TCSSCEEEECSS--SSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEET--TEE-EEEEEEETTEEEEEEEEE
T ss_pred             CCceEeeccccc--cCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeecc--cee-eeeeecccccceEEEEeE
Confidence            333222222211  11224467899999999988875  89999999999988776  232 33332 333  3689999


Q ss_pred             EEecCCcchHHHhhhCCCCC
Q 030042          157 LIGCDGIHSTVAWWLGLSEP  176 (184)
Q Consensus       157 vI~a~G~~s~~~~~~~~~~~  176 (184)
                      ||+|+|.+|.+++.+++..+
T Consensus       154 vIgAdG~~S~vr~~~g~~~~  173 (397)
T 3oz2_A          154 VIAADGFESEFGRWAGLKSV  173 (397)
T ss_dssp             EEECCCTTCHHHHHHTCGGG
T ss_pred             EEeCCccccHHHHHcCCCcc
Confidence            99999999999999987644

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.92  E-value=7.3e-24  Score=157.91  Aligned_cols=165  Identities=20%  Similarity=0.188  Sum_probs=119.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC--ccceeeecccHHHHHHHcCChHHHHhc---CCCcc-ceEEE
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG--TGAAISFAPNAWLALDALGVSHKLASI---YPPVN-RISVT   79 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~   79 (184)
                      .+|+||||||+||++|+.|+++|++|+|+||.+.+..  .|.++.+.+.+.+.|+++++.+.+...   ..... ...+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   81 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY   81 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence            3799999999999999999999999999999877654  366788899999999999988765432   11111 11111


Q ss_pred             ecCCCceeeeecC----CCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEee
Q 030042           80 NLGTGATQETSLT----GKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTK  155 (184)
Q Consensus        80 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~  155 (184)
                      . ...........    .....+.....+++..|.+.|.+.+ +..|++++++++++..++  .. ++|.+.||++++||
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~-~~~v~~~~~v~~~~~~~~--~~-v~v~~~dG~~~~ad  156 (412)
T 4hb9_A           82 N-ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGL-ANTIQWNKTFVRYEHIEN--GG-IKIFFADGSHENVD  156 (412)
T ss_dssp             C-TTSCEEEC--------------CEEEEEHHHHHHHHHTTC-TTTEECSCCEEEEEECTT--SC-EEEEETTSCEEEES
T ss_pred             c-CCcceecccCCccccccccccccceEeeHHHHHHHHHhhc-cceEEEEEEEEeeeEcCC--Ce-EEEEECCCCEEEee
Confidence            1 11111111000    0011122445788999999999887 456899999999987662  34 88999999999999


Q ss_pred             EEEecCCcchHHHhhhCCCC
Q 030042          156 FLIGCDGIHSTVAWWLGLSE  175 (184)
Q Consensus       156 ~vI~a~G~~s~~~~~~~~~~  175 (184)
                      +||+|||.+|.+|+.++...
T Consensus       157 lvVgADG~~S~vR~~l~~~~  176 (412)
T 4hb9_A          157 VLVGADGSNSKVRKQYLPFI  176 (412)
T ss_dssp             EEEECCCTTCHHHHHHSTTC
T ss_pred             EEEECCCCCcchHHHhCCCc
Confidence            99999999999999886554

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.92  E-value=5.5e-24  Score=167.03  Aligned_cols=173  Identities=23%  Similarity=0.252  Sum_probs=133.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh-----CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEE
Q 030042            4 VEKDVVIIGAGIAGLATALALKR-----LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISV   78 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~-----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (184)
                      .++||+||||||+||++|+.|++     .|++|+|||+.+.+...+++..+.+.+++.++.+|+++.+.....+...+.+
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~   86 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIAL   86 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEE
Confidence            36899999999999999999999     9999999999988777889999999999999999999999887777777777


Q ss_pred             EecCCC-ce-e--eeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--C---CeeeeCceEEEEeccCC-----CCCcceEE
Q 030042           79 TNLGTG-AT-Q--ETSLTGKFGDGSGPRFIHRKKLLQTLADELP--N---GTIHFSSKIAAIDSQTH-----DGSSPVFI  144 (184)
Q Consensus        79 ~~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~---~~i~~~~~v~~~~~~~~-----~~~~~~~v  144 (184)
                      +..... .. .  .+.........+....+++..+.+.|.+.+.  +   +++++++++++++.++.     ++.. +++
T Consensus        87 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~-V~v  165 (665)
T 1pn0_A           87 YNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYP-VTM  165 (665)
T ss_dssp             EEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCC-EEE
T ss_pred             EeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCC-EEE
Confidence            665432 22 1  1211111112224567888888888888774  4   79999999999987641     0123 555


Q ss_pred             EEe------------------------------------------cC--cEEEeeEEEecCCcchHHHhhhCCCCCc
Q 030042          145 HLV------------------------------------------DG--TIVKTKFLIGCDGIHSTVAWWLGLSEPL  177 (184)
Q Consensus       145 ~~~------------------------------------------~g--~~~~a~~vI~a~G~~s~~~~~~~~~~~~  177 (184)
                      .+.                                          +|  ++++||+||+|+|++|.+|+.++++.+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg~~~~g  242 (665)
T 1pn0_A          166 TLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIG  242 (665)
T ss_dssp             EEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCEE
T ss_pred             EEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcCCCCCC
Confidence            432                                          45  5799999999999999999999987653

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.91  E-value=8e-23  Score=158.32  Aligned_cols=169  Identities=22%  Similarity=0.271  Sum_probs=126.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCcc-ceEEEec
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVN-RISVTNL   81 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   81 (184)
                      |+++||+|||||++|+++|+.|+++|++|+|+|+.+.+. .+.+..+.+.+...++.+|+++.+........ ...+.+.
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~-~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~   99 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPR-YRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWG   99 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC-CCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCC-CceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEec
Confidence            456899999999999999999999999999999986443 34577888999999999999988876654332 2233332


Q ss_pred             CCCceeeeecCCCC--C-CCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe-cC--cEEE
Q 030042           82 GTGATQETSLTGKF--G-DGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV-DG--TIVK  153 (184)
Q Consensus        82 ~~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-~g--~~~~  153 (184)
                      .......+.+....  . ..+..+.+++..+.+.|.+.+.  |++++++++|+++...+  ++. +.|.+. +|  .++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~--g~~-~~V~~~~~G~~~~i~  176 (591)
T 3i3l_A          100 QDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSD--PDR-VVLTVRRGGESVTVE  176 (591)
T ss_dssp             SSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCS--TTC-EEEEEEETTEEEEEE
T ss_pred             CCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CCE-EEEEEecCCceEEEE
Confidence            22222233333221  1 1124567889999998888774  89999999999998764  344 777776 66  5799


Q ss_pred             eeEEEecCCcchHHHhhhCCCC
Q 030042          154 TKFLIGCDGIHSTVAWWLGLSE  175 (184)
Q Consensus       154 a~~vI~a~G~~s~~~~~~~~~~  175 (184)
                      ||+||+|+|.+|.+++.++.+.
T Consensus       177 AdlVV~AdG~~S~lr~~lg~~~  198 (591)
T 3i3l_A          177 SDFVIDAGGSGGPISRKLGVRQ  198 (591)
T ss_dssp             ESEEEECCGGGCHHHHHHTCEE
T ss_pred             cCEEEECCCCcchhHHHcCCCC
Confidence            9999999999999999887653

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.90  E-value=3.1e-23  Score=158.82  Aligned_cols=168  Identities=16%  Similarity=0.163  Sum_probs=120.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHH-HHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAW-LALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      +++||+|||||++|+++|+.|+++|++|+|+|+.+.+. .+.+..+.+... ..++.+|+++.+..............+.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~-~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~   84 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPR-HQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWG   84 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC-CCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCC-CCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEec
Confidence            46899999999999999999999999999999986432 234455555544 4788899998887766555443333322


Q ss_pred             CC-ceeeeecCCCC-CCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCc-ceEEEEecCc--EEEee
Q 030042           83 TG-ATQETSLTGKF-GDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSS-PVFIHLVDGT--IVKTK  155 (184)
Q Consensus        83 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~-~~~v~~~~g~--~~~a~  155 (184)
                      .. ......+.... ......+.+++..+.+.|.+.+.  +++++++++|+++...+  +.. .+.+.+.+|+  ++.||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~--~~v~gv~~~~~dG~~~~i~ad  162 (512)
T 3e1t_A           85 KEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEG--ERAVGVRYRNTEGVELMAHAR  162 (512)
T ss_dssp             SCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEET--TEEEEEEEECSSSCEEEEEEE
T ss_pred             CCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEEC--CEEEEEEEEeCCCCEEEEEcC
Confidence            22 11223333221 11224567889999999888774  89999999999999865  221 1445556674  89999


Q ss_pred             EEEecCCcchHHHhhhCCC
Q 030042          156 FLIGCDGIHSTVAWWLGLS  174 (184)
Q Consensus       156 ~vI~a~G~~s~~~~~~~~~  174 (184)
                      +||+|+|.+|.+++.++.+
T Consensus       163 ~VI~AdG~~S~vr~~lg~~  181 (512)
T 3e1t_A          163 FIVDASGNRTRVSQAVGER  181 (512)
T ss_dssp             EEEECCCTTCSSGGGTCCE
T ss_pred             EEEECCCcchHHHHHcCCC
Confidence            9999999999999988753

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.90  E-value=1.4e-23  Score=156.00  Aligned_cols=164  Identities=19%  Similarity=0.297  Sum_probs=120.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC--CCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL--RGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      ++||+|||||++|+++|+.|++.|++|+|+|+.+.+  ....++..+.+.+.+.++.+|+++.+.....+...+.+....
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~   81 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG   81 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECC
Confidence            489999999999999999999999999999997642  122333458899999999999999988766666666555432


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE-ecCc--EEEeeEE
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDGT--IVKTKFL  157 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g~--~~~a~~v  157 (184)
                        ....+.+... ..+.....+.+..+.+.|.+.+.  +++++++++|+++...+  ++. +.|.+ .+|+  +++||+|
T Consensus        82 --~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~--~~~-~~v~~~~~g~~~~~~a~~v  155 (394)
T 1k0i_A           82 --QRRRIDLKRL-SGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQ--GER-PYVTFERDGERLRLDCDYI  155 (394)
T ss_dssp             --EEEEECHHHH-HTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTT--SSS-CEEEEEETTEEEEEECSEE
T ss_pred             --ceEEeccccc-cCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEec--CCc-eEEEEecCCcEEEEEeCEE
Confidence              1122222111 01223445667777777776653  89999999999998764  233 66776 6786  7999999


Q ss_pred             EecCCcchHHHhhhCCC
Q 030042          158 IGCDGIHSTVAWWLGLS  174 (184)
Q Consensus       158 I~a~G~~s~~~~~~~~~  174 (184)
                      |+|||.+|.+|+.++.+
T Consensus       156 V~AdG~~S~vr~~l~~~  172 (394)
T 1k0i_A          156 AGCDGFHGISRQSIPAE  172 (394)
T ss_dssp             EECCCTTCSTGGGSCGG
T ss_pred             EECCCCCcHHHHhcCcc
Confidence            99999999999988754

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.85  E-value=7.2e-21  Score=143.75  Aligned_cols=158  Identities=16%  Similarity=0.107  Sum_probs=106.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC--CCccceeeecccHHHHHHHcCChHHHHh-cCCCccceEEEe
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL--RGTGAAISFAPNAWLALDALGVSHKLAS-IYPPVNRISVTN   80 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   80 (184)
                      +++||+|||||++|+++|+.|+++|++|+|+|+.+.+  +...++..+   +.+.++.+++...... .......+..+.
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l---~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   81 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV---SKAHFDKLGMPYPKGEELENKINGIKLYS   81 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEE---EHHHHHHTTCCCCCGGGEEEEEEEEEEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccc---cHHHHHHhcCCCCchHHHHhhhcceEEEC
Confidence            3689999999999999999999999999999998653  222333334   4566777766542211 111122222222


Q ss_pred             cCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe---cCc--EEE
Q 030042           81 LGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DGT--IVK  153 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g~--~~~  153 (184)
                      ....  ..+.+.      .....+++..+.+.|.+.+.  +++++++++|+++..++   +....|.+.   +|+  ++.
T Consensus        82 ~~~~--~~~~~~------~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~---~~v~gv~~~~~~~G~~~~~~  150 (453)
T 3atr_A           82 PDMQ--TVWTVN------GEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFED---GYVKGAVLFNRRTNEELTVY  150 (453)
T ss_dssp             TTSS--CEEEEE------EEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET---TEEEEEEEEETTTTEEEEEE
T ss_pred             CCCc--eEEeEC------CCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEEC---CEEEEEEEEEcCCCceEEEE
Confidence            1111  111111      02356889999998888764  89999999999998765   221224443   665  799


Q ss_pred             eeEEEecCCcchHHHhhhCCCC
Q 030042          154 TKFLIGCDGIHSTVAWWLGLSE  175 (184)
Q Consensus       154 a~~vI~a~G~~s~~~~~~~~~~  175 (184)
                      ||+||+|+|.+|.+++.++...
T Consensus       151 ad~VV~AdG~~s~vr~~l~~~~  172 (453)
T 3atr_A          151 SKVVVEATGYSRSFRSKLPPEL  172 (453)
T ss_dssp             CSEEEECCGGGCTTGGGSCTTS
T ss_pred             cCEEEECcCCchhhHHhcCCCC
Confidence            9999999999999999888754

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.84  E-value=3.5e-20  Score=142.72  Aligned_cols=171  Identities=16%  Similarity=0.165  Sum_probs=115.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHh---CCCCeEEEeccCCCCCccceeeecccHHH-HHHHcCChHH--HHhcCCCcc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKR---LGVEPLVLEKSDGLRGTGAAISFAPNAWL-ALDALGVSHK--LASIYPPVN   74 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~   74 (184)
                      |++..+||+|||||++|+++|+.|++   .|++|+|||+... ...+.+..+.+.... +++.+|+.+.  +........
T Consensus         1 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~-~~~~~g~~~~~~~~~~~l~~lG~~~~~~~~~~~~~~~   79 (538)
T 2aqj_A            1 MNKPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI-PRIGVGEATIPSLQKVFFDFLGIPEREWMPQVNGAFK   79 (538)
T ss_dssp             -CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS-CCCCSCEECCTHHHHHTHHHHTCCHHHHGGGGTCEEE
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC-CCcCCCcccchhHHHHHHHHhCCCHHHHHHhcCchhh
Confidence            66667999999999999999999999   9999999999653 334446777788888 8888888754  433222211


Q ss_pred             -ceEEEecCCC------ceeeeecC------------------------C----------------------CCCCCCCC
Q 030042           75 -RISVTNLGTG------ATQETSLT------------------------G----------------------KFGDGSGP  101 (184)
Q Consensus        75 -~~~~~~~~~~------~~~~~~~~------------------------~----------------------~~~~~~~~  101 (184)
                       .+.+..+...      ......+.                        +                      .....+..
T Consensus        80 ~g~~~~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  159 (538)
T 2aqj_A           80 AAIKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHA  159 (538)
T ss_dssp             CEEEEESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCCE
T ss_pred             CCccccCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCcc
Confidence             1112111110      00000000                        0                      00011245


Q ss_pred             eeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHH-HhhhCCCC
Q 030042          102 RFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV-AWWLGLSE  175 (184)
Q Consensus       102 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~-~~~~~~~~  175 (184)
                      ..+++..+.+.|.+.+.  |++++++ +|+++...++ +.. +.|.+.+|+++.||+||+|+|.+|.+ ++.++.+.
T Consensus       160 ~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-g~~-~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~~  233 (538)
T 2aqj_A          160 WHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNR-GYI-SNLLTKEGRTLEADLFIDCSGMRGLLINQALKEPF  233 (538)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCE-EEEEETTSCEECCSEEEECCGGGCCCCCCCTCCCE
T ss_pred             EEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCC-CcE-EEEEECCCcEEEeCEEEECCCCchhhHHHHhCCCc
Confidence            67899999999888774  8999999 8999987542 223 67888888889999999999999987 55666653

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.84  E-value=6.2e-20  Score=141.01  Aligned_cols=171  Identities=16%  Similarity=0.189  Sum_probs=117.7

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHh------------CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHH--H
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKR------------LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK--L   66 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~------------~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   66 (184)
                      |++..+||+|||||++|+++|..|++            .|++|+|+|+...+ ..+.+..+.+.+...++.+|+.+.  +
T Consensus         3 m~~~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~-~~g~g~~~~p~~~~~l~~lGi~e~~~~   81 (526)
T 2pyx_A            3 MQKPITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVA-TIGVGEGTWPSMRSTLSKIGIDENDFI   81 (526)
T ss_dssp             GGSCCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCC-CCCSCEECCTHHHHHHHHHTCCHHHHH
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCC-CcceeeechHhHHHHHHHcCCCHHHHH
Confidence            44457899999999999999999999            89999999986543 344577888999999999999985  5


Q ss_pred             HhcCCC-ccceEEEecCC------CceeeeecC---------------------------------------------CC
Q 030042           67 ASIYPP-VNRISVTNLGT------GATQETSLT---------------------------------------------GK   94 (184)
Q Consensus        67 ~~~~~~-~~~~~~~~~~~------~~~~~~~~~---------------------------------------------~~   94 (184)
                      ...... ...+.+..+..      .......+.                                             ..
T Consensus        82 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~  161 (526)
T 2pyx_A           82 RQCDASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQ  161 (526)
T ss_dssp             HHTTCEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCT
T ss_pred             HHcCCEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhccc
Confidence            544322 22222221111      000000000                                             00


Q ss_pred             C-CCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHH-Hh
Q 030042           95 F-GDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV-AW  169 (184)
Q Consensus        95 ~-~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~-~~  169 (184)
                      . ........+++..+.+.|.+.+   .|++++++ +|+++...++ +.. +.|.+.+|.++.||+||+|+|.+|.+ ++
T Consensus       162 ~~~~~~~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~-g~~-~~v~~~~g~~i~ad~vV~AdG~~S~~~~~  238 (526)
T 2pyx_A          162 YHFQNNYGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQH-GDI-EKLITKQNGEISGQLFIDCTGAKSLLLGE  238 (526)
T ss_dssp             TCCSSCCEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTT-SCE-EEEEESSSCEEECSEEEECSGGGCCCCCC
T ss_pred             cCCCCCeeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCC-CcE-EEEEECCCCEEEcCEEEECCCcchHHHHH
Confidence            0 0011346789999988887765   37899999 6999987542 222 56778887789999999999999987 67


Q ss_pred             hhCCCC
Q 030042          170 WLGLSE  175 (184)
Q Consensus       170 ~~~~~~  175 (184)
                      .++.+.
T Consensus       239 ~lg~~~  244 (526)
T 2pyx_A          239 HLQVPF  244 (526)
T ss_dssp             CTCCCE
T ss_pred             HhCCCc
Confidence            777654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.84  E-value=1.5e-19  Score=140.18  Aligned_cols=158  Identities=24%  Similarity=0.266  Sum_probs=105.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC------CCCeEEEeccCCCCCc-cceeeecccHHHHHHHcCChHHHHhcCCCcc---
Q 030042            5 EKDVVIIGAGIAGLATALALKRL------GVEPLVLEKSDGLRGT-GAAISFAPNAWLALDALGVSHKLASIYPPVN---   74 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~------g~~v~vie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   74 (184)
                      ++||+|||||++|+++|+.|++.      |++|+|+||.+.++.. ..+..+.+.+++.+  +.   .+.....+..   
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l--l~---~~~~~g~~~~~~~  109 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL--FP---DWKEKGAPLNTPV  109 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH--CT---THHHHTCCCCEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH--HH---HHHhcCCceeeee
Confidence            58999999999999999999998      9999999998776543 34556777665554  22   2222222221   


Q ss_pred             ---ceEEEecCCCceeeeecCCC-CCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe-
Q 030042           75 ---RISVTNLGTGATQETSLTGK-FGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV-  147 (184)
Q Consensus        75 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-  147 (184)
                         .+.+..  ......+++... .......+.+++..+.++|.+.+.  +++++++++|+++..+++ +.. +.|.+. 
T Consensus       110 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~-g~V-~gV~~~~  185 (584)
T 2gmh_A          110 TEDRFGILT--EKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHED-GSV-KGIATND  185 (584)
T ss_dssp             CEEEEEEEC--SSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTT-SSE-EEEEECC
T ss_pred             chhheeeec--cCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-CCE-EEEEeCC
Confidence               122221  111111111010 111223567889999999988774  899999999999987652 222 346665 


Q ss_pred             -----cC---------cEEEeeEEEecCCcchHHHhhh
Q 030042          148 -----DG---------TIVKTKFLIGCDGIHSTVAWWL  171 (184)
Q Consensus       148 -----~g---------~~~~a~~vI~a~G~~s~~~~~~  171 (184)
                           +|         .++.||+||+|+|.+|.+++.+
T Consensus       186 ~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l  223 (584)
T 2gmh_A          186 VGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQL  223 (584)
T ss_dssp             EEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHH
T ss_pred             ccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHH
Confidence                 33         5899999999999999988765

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.83  E-value=1.1e-19  Score=140.35  Aligned_cols=171  Identities=15%  Similarity=0.148  Sum_probs=117.6

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHh---CCCCeEEEeccCCCCCccceeeecccHHH-HHHHcCChHH--HHhcCCCc-
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKR---LGVEPLVLEKSDGLRGTGAAISFAPNAWL-ALDALGVSHK--LASIYPPV-   73 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~-   73 (184)
                      |++..+||+|||||++|+++|+.|++   .|++|+|||+.+. ...+.+..+.+.... .++.+|+.+.  +....... 
T Consensus        21 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~-~~~~~g~~~~p~~~~~~l~~lGi~~~~~~~~~~~~~~   99 (550)
T 2e4g_A           21 MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI-PTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYK   99 (550)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC-CCCCCCEECCTHHHHHTHHHHTCCHHHHHHHTTCEEE
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC-CccceeeeechhHHHHHHHHhCCChHHHHHhcCCeEE
Confidence            55557899999999999999999999   9999999999653 334456777788888 8899998865  54433222 


Q ss_pred             cceEEEecCCC--------------ceeeeecC-----------------------C---------------CC------
Q 030042           74 NRISVTNLGTG--------------ATQETSLT-----------------------G---------------KF------   95 (184)
Q Consensus        74 ~~~~~~~~~~~--------------~~~~~~~~-----------------------~---------------~~------   95 (184)
                      ..+.+..+...              ......+.                       .               ..      
T Consensus       100 ~g~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (550)
T 2e4g_A          100 VAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRL  179 (550)
T ss_dssp             CEEEEESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCT
T ss_pred             EeeeEeecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhh
Confidence            22222222111              00000010                       0               00      


Q ss_pred             C---CCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHH-H
Q 030042           96 G---DGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV-A  168 (184)
Q Consensus        96 ~---~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~-~  168 (184)
                      .   .....+.+++..+.+.|.+.+.   |++++++ +|+++...++ +.. +.|.+.+|+++.||+||+|+|.+|.+ +
T Consensus       180 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~-g~~-~~v~~~~G~~i~ad~vI~A~G~~S~~~~  256 (550)
T 2e4g_A          180 DGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDAN-GNI-ESVRTATGRVFDADLFVDCSGFRGLLIN  256 (550)
T ss_dssp             TSCBCSCCEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTT-SCE-EEEEETTSCEEECSEEEECCGGGCCCCC
T ss_pred             cCCCCCCcceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCC-CCE-EEEEECCCCEEECCEEEECCCCchhhHH
Confidence            0   0123456899999999888773   7899999 9999987542 233 67888888889999999999999987 6


Q ss_pred             hhhCCCC
Q 030042          169 WWLGLSE  175 (184)
Q Consensus       169 ~~~~~~~  175 (184)
                      +.++.+.
T Consensus       257 ~~lg~~~  263 (550)
T 2e4g_A          257 KAMEEPF  263 (550)
T ss_dssp             CCTCCCE
T ss_pred             HHhCCCc
Confidence            6777653

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.82  E-value=1.9e-19  Score=137.85  Aligned_cols=166  Identities=17%  Similarity=0.209  Sum_probs=110.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHh---CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHH--HHhcCCCcc-ceEE
Q 030042            5 EKDVVIIGAGIAGLATALALKR---LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK--LASIYPPVN-RISV   78 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~   78 (184)
                      .+||+|||||++|+++|+.|++   .|++|+|+|+... ...+.+..+.+.....++.+|+.+.  +........ ...+
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~-~~~~~g~~~~~~~~~~l~~lgi~~~~~~~~~~~~~~~~~~~   80 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV-RRIGVGEATFSTVRHFFDYLGLDEREWLPRCAGGYKLGIRF   80 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--------CCEECCTTHHHHHHHHTCCHHHHHHHTTCEEECEEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC-CceeeccccCcchHHHHHHcCCCHHHHHHHcCCeEecccee
Confidence            4799999999999999999999   9999999999753 3345566677888889999998864  444332211 1111


Q ss_pred             EecCC-Cce--e------------------------------------------------eeec----C---CCC----C
Q 030042           79 TNLGT-GAT--Q------------------------------------------------ETSL----T---GKF----G   96 (184)
Q Consensus        79 ~~~~~-~~~--~------------------------------------------------~~~~----~---~~~----~   96 (184)
                      ..+.. ...  .                                                ...+    .   ...    .
T Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  160 (511)
T 2weu_A           81 ENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAEQ  160 (511)
T ss_dssp             ESSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGGC
T ss_pred             cCCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccccC
Confidence            11110 000  0                                                0001    0   000    0


Q ss_pred             C--CCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHH-Hhhh
Q 030042           97 D--GSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTV-AWWL  171 (184)
Q Consensus        97 ~--~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~-~~~~  171 (184)
                      .  ......+++..+.+.|.+.+.  |++++++ +|+++..+++ +.. +.|.+.+|+++.||+||+|+|.+|.+ ++.+
T Consensus       161 ~~~~~~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-~~~-~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~  237 (511)
T 2weu_A          161 RAQFPYAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDER-GWI-SGVHTKQHGEISGDLFVDCTGFRGLLINQTL  237 (511)
T ss_dssp             CSCCSCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCE-EEEEESSSCEEECSEEEECCGGGCCCCCCCT
T ss_pred             cCCCCeeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCC-CCE-EEEEECCCCEEEcCEEEECCCcchHHHHHHh
Confidence            0  224467899999999988774  8999999 9999987542 233 67888888889999999999999987 5566


Q ss_pred             CCC
Q 030042          172 GLS  174 (184)
Q Consensus       172 ~~~  174 (184)
                      +.+
T Consensus       238 g~~  240 (511)
T 2weu_A          238 GGR  240 (511)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            765

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.79  E-value=4.7e-18  Score=126.32  Aligned_cols=173  Identities=19%  Similarity=0.164  Sum_probs=101.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC--Ccc-ceee-e----ccc-H-HHHHHHcCChHHHHhc-
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR--GTG-AAIS-F----APN-A-WLALDALGVSHKLASI-   69 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~--~~~-~~~~-~----~~~-~-~~~~~~~~~~~~~~~~-   69 (184)
                      |+ .++||+|||||++|+++|+.|+++|.+|+|+|+.....  +.+ .... +    ... . ....+.+..++++.+. 
T Consensus         1 M~-~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   79 (397)
T 2oln_A            1 MT-ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALESRC   79 (397)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHHHHHHHHHHHh
Confidence            54 35899999999999999999999999999999987654  211 1111 1    110 0 0111222233333221 


Q ss_pred             CCC----ccceEEEecCC-----------------Cce-eee-------ecCCCCC-------CCCCCeeeeHHHHHHHH
Q 030042           70 YPP----VNRISVTNLGT-----------------GAT-QET-------SLTGKFG-------DGSGPRFIHRKKLLQTL  113 (184)
Q Consensus        70 ~~~----~~~~~~~~~~~-----------------~~~-~~~-------~~~~~~~-------~~~~~~~~~~~~l~~~l  113 (184)
                      ...    ...+.......                 +.. ..+       .++....       ..+....+++..+.+.|
T Consensus        80 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~l  159 (397)
T 2oln_A           80 ERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAAL  159 (397)
T ss_dssp             TCCCEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHHHHHH
T ss_pred             CccHHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHHHHHH
Confidence            100    00111111100                 000 000       0111000       01123467777888877


Q ss_pred             HhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHhhhCCCCCccc
Q 030042          114 ADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLSEPLNV  179 (184)
Q Consensus       114 ~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~~~~~~  179 (184)
                      .+.+.  +++++++++|+++...+   +. +.|.+.++ ++.||.||+|+|+++ .+.+.++...|..+
T Consensus       160 ~~~a~~~Gv~i~~~~~V~~i~~~~---~~-v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~p~~~  223 (397)
T 2oln_A          160 FTLAQAAGATLRAGETVTELVPDA---DG-VSVTTDRG-TYRAGKVVLACGPYTNDLLEPLGARLAYSV  223 (397)
T ss_dssp             HHHHHHTTCEEEESCCEEEEEEET---TE-EEEEESSC-EEEEEEEEECCGGGHHHHHGGGTCCCCEEE
T ss_pred             HHHHHHcCCEEECCCEEEEEEEcC---Ce-EEEEECCC-EEEcCEEEEcCCcChHHHhhhcCCCCCeeE
Confidence            77653  89999999999998765   44 77777666 799999999999985 57777876666544

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.78  E-value=3.9e-19  Score=132.71  Aligned_cols=150  Identities=21%  Similarity=0.190  Sum_probs=93.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc------cee-ee---c---------ccHHHHHHHcC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG------AAI-SF---A---------PNAWLALDALG   61 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~------~~~-~~---~---------~~~~~~~~~~~   61 (184)
                      |.+.++||+|||||++|+++|+.|+++|.+|+|+|+.+.++...      +.. .-   .         ......+..+.
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~  102 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYR  102 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSC
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcC
Confidence            44467899999999999999999999999999999988764321      110 00   0         00111222221


Q ss_pred             Ch---HHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCC
Q 030042           62 VS---HKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTH  136 (184)
Q Consensus        62 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~  136 (184)
                      ..   +.+.....     .+....              .+..+....+..+.+.|.+.+.  +++++++++|+++...+ 
T Consensus       103 ~~~~~~~~~~~Gi-----~~~~~~--------------~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~-  162 (417)
T 3v76_A          103 PQDFVALVERHGI-----GWHEKT--------------LGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTA-  162 (417)
T ss_dssp             HHHHHHHHHHTTC-----CEEECS--------------TTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEET-
T ss_pred             HHHHHHHHHHcCC-----CcEEee--------------CCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-
Confidence            11   11111111     111100              0100112335677777777664  89999999999998775 


Q ss_pred             CCCcceEEEEecCcEEEeeEEEecCCcch-----------HHHhhhCCC
Q 030042          137 DGSSPVFIHLVDGTIVKTKFLIGCDGIHS-----------TVAWWLGLS  174 (184)
Q Consensus       137 ~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-----------~~~~~~~~~  174 (184)
                        +. +.|.+.+| ++.||.||+|+|.+|           .+++.+|..
T Consensus       163 --~~-~~V~~~~g-~i~ad~VIlAtG~~S~p~~gs~g~g~~la~~~G~~  207 (417)
T 3v76_A          163 --SG-FRVTTSAG-TVDAASLVVASGGKSIPKMGATGLAYRIAEQFGLP  207 (417)
T ss_dssp             --TE-EEEEETTE-EEEESEEEECCCCSSCGGGTCCCHHHHHHHHTTCC
T ss_pred             --CE-EEEEECCc-EEEeeEEEECCCCccCCCCCCCcHHHHHHHHCCCC
Confidence              44 88888888 899999999999987           466677765

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.77  E-value=1.4e-18  Score=132.60  Aligned_cols=139  Identities=20%  Similarity=0.232  Sum_probs=102.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      .+||+|||||++|+++|+.|++.|.+|+|||+.+..+.. +...+.+.+.+.+..+|+++....                
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~-~~~~~~~~~~~~l~~~g~~~~~~~----------------  154 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH-NVLHLWPFTIHDLRALGAKKFYGR----------------  154 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC-CEEECCHHHHHHHHTTTHHHHCTT----------------
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC-CcccCChhHHHHHHHcCCcccccc----------------
Confidence            589999999999999999999999999999998776433 455667777777877776543210                


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE--e-cC--cEEEeeEE
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL--V-DG--TIVKTKFL  157 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~-~g--~~~~a~~v  157 (184)
                            |.     ......+++..+.+.|.+.+.  +++++++++|+++...+++++. +.|.+  . +|  .++.||+|
T Consensus       155 ------~~-----~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~-~~v~~~~~~~g~~~~i~ad~V  222 (497)
T 2bry_A          155 ------FC-----TGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSG-WRAQLQPNPPAQLASYEFDVL  222 (497)
T ss_dssp             ------TT-----CTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCC-BEEEEESCCCHHHHTCCBSEE
T ss_pred             ------cc-----ccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCE-EEEEEEECCCCCEEEEEcCEE
Confidence                  00     001224667777777777663  8999999999999875311244 66766  3 55  47899999


Q ss_pred             EecCCcchHHHhhhC
Q 030042          158 IGCDGIHSTVAWWLG  172 (184)
Q Consensus       158 I~a~G~~s~~~~~~~  172 (184)
                      |+|+|.+|.+++..+
T Consensus       223 V~A~G~~S~~r~~~~  237 (497)
T 2bry_A          223 ISAAGGKFVPEGFTI  237 (497)
T ss_dssp             EECCCTTCCCTTCEE
T ss_pred             EECCCCCcccccccc
Confidence            999999998876544

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.77  E-value=2.8e-17  Score=120.67  Aligned_cols=71  Identities=13%  Similarity=0.280  Sum_probs=57.6

Q ss_pred             CeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCcch-HHHhhh-CCC
Q 030042          101 PRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGIHS-TVAWWL-GLS  174 (184)
Q Consensus       101 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~~s-~~~~~~-~~~  174 (184)
                      ...+++..+.+.|.+.+.  |++++++++|+++...+  +.. +.|.+.+|  .++.||.||+|+|.+| .+.+.+ |++
T Consensus       144 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~~-~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          144 TGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRP--EGG-FELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIP  220 (369)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECT--TSS-EEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSC
T ss_pred             CEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcC--Cce-EEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCC
Confidence            446778888888887764  89999999999999875  233 77888888  4899999999999998 577777 765

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.75  E-value=8.1e-18  Score=124.38  Aligned_cols=73  Identities=10%  Similarity=0.136  Sum_probs=58.1

Q ss_pred             eeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceE-EEEecCcEEEeeEEEecCCcch-HHHhhhCCC--C
Q 030042          102 RFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVF-IHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLS--E  175 (184)
Q Consensus       102 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~-v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~--~  175 (184)
                      ..+++..+.+.|.+.+.  +++++++++|+++...+   +. +. |.+.+| ++.||.||+|+|.++ .+.+.++..  .
T Consensus       144 ~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~---~~-v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~~~  218 (382)
T 1y56_B          144 GKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIEN---NE-IKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIKTKI  218 (382)
T ss_dssp             CEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESS---SB-EEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCCSCC
T ss_pred             eeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEEC---CE-EEEEEECCc-EEECCEEEECcchhHHHHHHHcCCCcCc
Confidence            45678888888877764  89999999999998765   33 55 888777 799999999999998 577777766  5


Q ss_pred             Cccc
Q 030042          176 PLNV  179 (184)
Q Consensus       176 ~~~~  179 (184)
                      |.++
T Consensus       219 ~~~~  222 (382)
T 1y56_B          219 PIEP  222 (382)
T ss_dssp             CCEE
T ss_pred             CCCe
Confidence            6554

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.75  E-value=3.5e-19  Score=131.80  Aligned_cols=142  Identities=16%  Similarity=0.144  Sum_probs=99.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCCh-HH-HHhcCCCccceEEEec
Q 030042            6 KDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVS-HK-LASIYPPVNRISVTNL   81 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~   81 (184)
                      .||+|||||++|+++|+.|+++  |++|+|+|+.+.+...+++..+.+.+...+...+++ +. +.........+.+.. 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVH-   79 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEE-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEe-
Confidence            3899999999999999999999  999999999988777788888887766522111222 22 222222333343333 


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG  159 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~  159 (184)
                      . +..  +..    ..+.....+.+.++.+.|.+.++  +++++++++|++++...               ++.||+||+
T Consensus        80 ~-g~~--~~~----~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~---------------~~~ad~vV~  137 (381)
T 3c4a_A           80 H-NEP--SLM----STGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGELP---------------LADYDLVVL  137 (381)
T ss_dssp             S-SSE--EEC----CCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGCC---------------GGGCSEEEE
T ss_pred             C-Cee--EEe----cCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhcc---------------cccCCEEEE
Confidence            1 111  111    11233457899999999988774  78999999998876421               246999999


Q ss_pred             cCCcchHHHhhh
Q 030042          160 CDGIHSTVAWWL  171 (184)
Q Consensus       160 a~G~~s~~~~~~  171 (184)
                      |+|.+|. |+.+
T Consensus       138 AdG~~S~-R~~l  148 (381)
T 3c4a_A          138 ANGVNHK-TAHF  148 (381)
T ss_dssp             CCGGGGG-TCCS
T ss_pred             CCCCCch-HHhh
Confidence            9999999 8876

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.75  E-value=3.8e-18  Score=128.36  Aligned_cols=61  Identities=16%  Similarity=0.221  Sum_probs=51.6

Q ss_pred             eeeeHHHHHHHHHhhCC--CCeeeeCc---eEEEEeccCCCCCcceE-EEEecCcEEEeeEEEecCCcchH
Q 030042          102 RFIHRKKLLQTLADELP--NGTIHFSS---KIAAIDSQTHDGSSPVF-IHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       102 ~~~~~~~l~~~l~~~~~--~~~i~~~~---~v~~~~~~~~~~~~~~~-v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      ..+++..+...|.+.+.  |+++++++   +|+++...+   .. +. |.+.+|+++.||.||+|+|+++.
T Consensus       156 g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~---~~-v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN---ND-VKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET---TE-EEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             EEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC---Ce-EEEEEECCCCEEECCEEEECCCCChh
Confidence            57778888888888774  89999999   999998765   33 55 89999988999999999999984

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.75  E-value=2e-18  Score=127.41  Aligned_cols=75  Identities=15%  Similarity=0.135  Sum_probs=60.6

Q ss_pred             CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHhhhCCC-C
Q 030042          100 GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLS-E  175 (184)
Q Consensus       100 ~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~-~  175 (184)
                      ....+++..+.+.|.+.+.  |++++++++|+++...+   +. +.|.+.+| ++.||.||+|+|.++ .+.+.++.. .
T Consensus       147 ~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~---~~-~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~~  221 (381)
T 3nyc_A          147 TGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVD---GA-WEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGVRPL  221 (381)
T ss_dssp             TCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEET---TE-EEEECSSE-EEEESEEEECCGGGHHHHHHHHTCCCC
T ss_pred             CCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeC---Ce-EEEEeCCC-EEEcCEEEECCChhHHHHHHHhCCCCC
Confidence            3456788888888888774  89999999999999875   44 88888887 799999999999998 577778865 3


Q ss_pred             Cccc
Q 030042          176 PLNV  179 (184)
Q Consensus       176 ~~~~  179 (184)
                      |.++
T Consensus       222 ~~~p  225 (381)
T 3nyc_A          222 GLQP  225 (381)
T ss_dssp             CCEE
T ss_pred             ceee
Confidence            4443

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.74  E-value=7.1e-18  Score=125.50  Aligned_cols=74  Identities=11%  Similarity=0.089  Sum_probs=58.4

Q ss_pred             eeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHhhhCCCCCcc
Q 030042          102 RFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLSEPLN  178 (184)
Q Consensus       102 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~~~~~  178 (184)
                      .++++..+.+.|.+.+.  +++++++++|+++...+  +.. +.|.+.+| ++.||.||+|+|.++ .+++.++...|..
T Consensus       169 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~-~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~~~~~~  244 (405)
T 2gag_B          169 GIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDG--EKV-TGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGFELPIQ  244 (405)
T ss_dssp             BBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBE-EEEEETTC-CEEEEEEEECCGGGHHHHHHHHTCCCCEE
T ss_pred             ccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeC--CEE-EEEEeCCc-eEECCEEEECCchhHHHHHHHcCCCCCcc
Confidence            45567778777777664  89999999999998765  233 67888887 799999999999998 6788888776655


Q ss_pred             c
Q 030042          179 V  179 (184)
Q Consensus       179 ~  179 (184)
                      +
T Consensus       245 ~  245 (405)
T 2gag_B          245 S  245 (405)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.74  E-value=1.9e-17  Score=130.61  Aligned_cols=71  Identities=6%  Similarity=0.106  Sum_probs=57.4

Q ss_pred             CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhCCC
Q 030042          100 GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLGLS  174 (184)
Q Consensus       100 ~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~~~  174 (184)
                      ....+++..+...|.+.+.  |++++++++|+++...+   .. |.|.+.+|.++.||.||+|+|.++. +.+..+++
T Consensus       410 ~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~---~~-v~V~t~~G~~i~Ad~VVlAtG~~s~~l~~~~~lp  483 (676)
T 3ps9_A          410 QGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKD---DC-WLLNFAGDQQATHSVVVLANGHQISRFSQTSTLP  483 (676)
T ss_dssp             TCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEET---TE-EEEEETTSCEEEESEEEECCGGGGGCSTTTTTCS
T ss_pred             CCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC---Ce-EEEEECCCCEEECCEEEECCCcchhccccccCCc
Confidence            3456778888888888764  89999999999999876   44 8889888888999999999999985 55555543

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.73  E-value=1.6e-16  Score=117.62  Aligned_cols=169  Identities=18%  Similarity=0.216  Sum_probs=100.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC--Cccc-eee-----ecc--cHHH-HHHHcCChHHHHhcCC-C
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR--GTGA-AIS-----FAP--NAWL-ALDALGVSHKLASIYP-P   72 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~--~~~~-~~~-----~~~--~~~~-~~~~~~~~~~~~~~~~-~   72 (184)
                      ++||+|||||++|+++|+.|+++|.+|+|+|+....+  +.+. ...     +..  .... ..+....++.+..... .
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~   82 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHHK   82 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHhCCc
Confidence            5899999999999999999999999999999987554  2221 111     111  1111 1122223333332111 0


Q ss_pred             ---ccceEEEecC-CC--------------ce-eee-------ecCCCCCC-------CCCCeeeeHHHHHHHHHhhCC-
Q 030042           73 ---VNRISVTNLG-TG--------------AT-QET-------SLTGKFGD-------GSGPRFIHRKKLLQTLADELP-  118 (184)
Q Consensus        73 ---~~~~~~~~~~-~~--------------~~-~~~-------~~~~~~~~-------~~~~~~~~~~~l~~~l~~~~~-  118 (184)
                         .......... ..              .. ..+       .++.....       .+....+++..+.+.|.+.+. 
T Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (389)
T 2gf3_A           83 IFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEA  162 (389)
T ss_dssp             CEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHHH
T ss_pred             ceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHHHHHHHHH
Confidence               0111111111 00              00 000       01110000       122356778888888888774 


Q ss_pred             -CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhCCCCCcc
Q 030042          119 -NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLGLSEPLN  178 (184)
Q Consensus       119 -~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~~~~~~~  178 (184)
                       |++++++++|++++..+   +. +.|.+.+| ++.||.||+|+|.++. +.+.++...|..
T Consensus       163 ~Gv~i~~~~~v~~i~~~~---~~-~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~g~~~pl~  219 (389)
T 2gf3_A          163 RGAKVLTHTRVEDFDISP---DS-VKIETANG-SYTADKLIVSMGAWNSKLLSKLNLDIPLQ  219 (389)
T ss_dssp             TTCEEECSCCEEEEEECS---SC-EEEEETTE-EEEEEEEEECCGGGHHHHGGGGTEECCCE
T ss_pred             CCCEEEcCcEEEEEEecC---Ce-EEEEeCCC-EEEeCEEEEecCccHHHHhhhhccCCceE
Confidence             89999999999999865   34 77887766 7999999999999874 556666334433

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.73  E-value=2.1e-17  Score=130.62  Aligned_cols=71  Identities=11%  Similarity=0.046  Sum_probs=56.1

Q ss_pred             CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCc-EEEeeEEEecCCcchH-HHhhhCCC
Q 030042          100 GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT-IVKTKFLIGCDGIHST-VAWWLGLS  174 (184)
Q Consensus       100 ~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~-~~~a~~vI~a~G~~s~-~~~~~~~~  174 (184)
                      ....+++..+.+.|.+.+.  |++++++++|+++...+   +. +.|.+.+|. ++.||.||+|+|+++. +.+.++++
T Consensus       405 ~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~---~~-v~V~t~~G~~~i~Ad~VVlAtG~~s~~l~~~~~lp  479 (689)
T 3pvc_A          405 AGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRID---SQ-WQLTFGQSQAAKHHATVILATGHRLPEWEQTHHLP  479 (689)
T ss_dssp             TCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECS---SS-EEEEEC-CCCCEEESEEEECCGGGTTCSTTTTTSC
T ss_pred             CCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeC---Ce-EEEEeCCCcEEEECCEEEECCCcchhccccccCCc
Confidence            3456778888888887764  89999999999999876   44 889998887 8999999999999985 55555544

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.73  E-value=4.7e-17  Score=118.92  Aligned_cols=129  Identities=18%  Similarity=0.197  Sum_probs=87.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      +++||+|||||++|+++|+.|+++|++|+|+|+.+.+++....               .++          ......  .
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~---------------~~~----------~~~~~~--~   54 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH---------------AWH----------SLHLFS--P   54 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG---------------SCT----------TCBCSS--C
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC---------------CCC----------CcEecC--c
Confidence            4689999999999999999999999999999998876544211               000          000000  0


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceE-EEEecCcEEEeeEEEec
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVF-IHLVDGTIVKTKFLIGC  160 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~-v~~~~g~~~~a~~vI~a  160 (184)
                      .  ....+...........+..+.++.+++.+.+.  +++++++++|+++...+   +. +. |.+.++ ++.+|.||+|
T Consensus        55 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~~v~~~~g-~~~~d~vV~A  127 (357)
T 4a9w_A           55 A--GWSSIPGWPMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFG---ER-LRVVARDGR-QWLARAVISA  127 (357)
T ss_dssp             G--GGSCCSSSCCCCCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEET---TE-EEEEETTSC-EEEEEEEEEC
T ss_pred             h--hhhhCCCCCCCCCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECC---Cc-EEEEEeCCC-EEEeCEEEEC
Confidence            0  00001111001112223456777777766553  78899999999999875   44 77 888887 8999999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      +|.++.
T Consensus       128 tG~~~~  133 (357)
T 4a9w_A          128 TGTWGE  133 (357)
T ss_dssp             CCSGGG
T ss_pred             CCCCCC
Confidence            998764

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.72  E-value=4.6e-17  Score=121.09  Aligned_cols=152  Identities=21%  Similarity=0.217  Sum_probs=91.3

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc------cce--ee--eccc---------HHHHHHHcCC-
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT------GAA--IS--FAPN---------AWLALDALGV-   62 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~------~~~--~~--~~~~---------~~~~~~~~~~-   62 (184)
                      |+++||+|||||++|+++|+.|+++|.+|+|+|+.+.++..      ++.  ..  ..+.         ....+..+.. 
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW   81 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHH
Confidence            35799999999999999999999999999999998765321      111  00  0000         0011111110 


Q ss_pred             --hHHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCC-
Q 030042           63 --SHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHD-  137 (184)
Q Consensus        63 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~-  137 (184)
                        .+.+...+.+     +.....+  ..+  +       .  . .+..+.+.|.+.+.  +++++++++|+++...++. 
T Consensus        82 ~~~~~~~~~Gi~-----~~~~~~g--~~~--p-------~--~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~  142 (401)
T 2gqf_A           82 DFISLVAEQGIT-----YHEKELG--QLF--C-------D--E-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDE  142 (401)
T ss_dssp             HHHHHHHHTTCC-----EEECSTT--EEE--E-------T--T-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCS
T ss_pred             HHHHHHHhCCCc-----eEECcCC--EEc--c-------C--C-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcC
Confidence              0111111111     0000000  000  0       0  0 35667777766654  8999999999999865100 


Q ss_pred             CCcceEEEEecCcEEEeeEEEecCCcch-----------HHHhhhCCCC
Q 030042          138 GSSPVFIHLVDGTIVKTKFLIGCDGIHS-----------TVAWWLGLSE  175 (184)
Q Consensus       138 ~~~~~~v~~~~g~~~~a~~vI~a~G~~s-----------~~~~~~~~~~  175 (184)
                      ... +.|.+.++ +++||.||+|+|.+|           .+++.+|...
T Consensus       143 ~~~-~~v~~~~g-~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i  189 (401)
T 2gqf_A          143 KVR-FVLQVNST-QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPV  189 (401)
T ss_dssp             SCC-EEEEETTE-EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCE
T ss_pred             CCe-EEEEECCC-EEECCEEEECCCCccCCCCCCChHHHHHHHHCCCCc
Confidence            033 77888776 799999999999988           4666677653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.72  E-value=4.8e-17  Score=122.71  Aligned_cols=163  Identities=19%  Similarity=0.210  Sum_probs=93.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc------cceeeeccc-HHHHHHHcCChHHHH----hcCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT------GAAISFAPN-AWLALDALGVSHKLA----SIYPP   72 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~   72 (184)
                      +++||+|||||++|+++|+.|++.|.+|+|+|+.+.+++.      ++....... ...++..+.....+.    .....
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN  104 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCH
Confidence            4589999999999999999999999999999998765421      111101000 111122111100000    00000


Q ss_pred             ccceEEEecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC
Q 030042           73 VNRISVTNLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG  149 (184)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g  149 (184)
                      ...+.+......   .+....   .+. .........+.+.|.+.+.  +++++++++|+++...+  +.. +.|.+.+|
T Consensus       105 ~~~~~~~~~~G~---~~~~~~---~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~--~~v-~~V~~~~G  175 (447)
T 2i0z_A          105 EDIITFFENLGV---KLKEED---HGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN--GQT-KAVILQTG  175 (447)
T ss_dssp             HHHHHHHHHTTC---CEEECG---GGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEE-EEEEETTC
T ss_pred             HHHHHHHHhcCC---ceEEee---CCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC--CcE-EEEEECCC
Confidence            000000000000   000000   000 0000024566666666553  89999999999998754  233 77888888


Q ss_pred             cEEEeeEEEecCCcch-----------HHHhhhCCCC
Q 030042          150 TIVKTKFLIGCDGIHS-----------TVAWWLGLSE  175 (184)
Q Consensus       150 ~~~~a~~vI~a~G~~s-----------~~~~~~~~~~  175 (184)
                      +++.||.||+|+|.+|           .+++.+|...
T Consensus       176 ~~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~~  212 (447)
T 2i0z_A          176 EVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTI  212 (447)
T ss_dssp             CEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCE
T ss_pred             CEEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCCc
Confidence            7899999999999999           7888888764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.72  E-value=1.6e-17  Score=123.79  Aligned_cols=170  Identities=16%  Similarity=0.121  Sum_probs=94.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCcc-c--eeee-cccH------HHHHHHcCChHHHHhc--
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTG-A--AISF-APNA------WLALDALGVSHKLASI--   69 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~-~--~~~~-~~~~------~~~~~~~~~~~~~~~~--   69 (184)
                      .++||+|||||++|+++|+.|+++  |.+|+|||+.....+.+ .  +..+ .+..      .-..+.+..+......  
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  114 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGK  114 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCC
Confidence            358999999999999999999999  99999999975443321 1  1112 1110      0111111112210000  


Q ss_pred             CCCccc--eE-EEecCC--Cce--e----eee-c------CCC--CCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCce
Q 030042           70 YPPVNR--IS-VTNLGT--GAT--Q----ETS-L------TGK--FGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSK  127 (184)
Q Consensus        70 ~~~~~~--~~-~~~~~~--~~~--~----~~~-~------~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~  127 (184)
                      ...+..  .. ......  +..  .    ..+ +      ...  ....+....+++..+.+.|.+.+.  +++++++++
T Consensus       115 ~~~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~  194 (405)
T 3c4n_A          115 TLEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTR  194 (405)
T ss_dssp             CCCEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCE
T ss_pred             CCcEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCE
Confidence            001110  00 000000  000  0    000 0      000  001123456788888888888764  899999999


Q ss_pred             EE---------EEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHh-hhCCCCCcc
Q 030042          128 IA---------AIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAW-WLGLSEPLN  178 (184)
Q Consensus       128 v~---------~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~-~~~~~~~~~  178 (184)
                      |+         ++...+   +. +.|.+.+| ++.||.||+|+|.+| .+++ .+++..|..
T Consensus       195 v~~~~g~~~~~~i~~~~---~~-v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~~~~~~  251 (405)
T 3c4n_A          195 AELVPGGVRLHRLTVTN---TH-QIVVHETR-QIRAGVIIVAAGAAGPALVEQGLGLHTRHG  251 (405)
T ss_dssp             EEEETTEEEEECBCC-----------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCCCCCCE
T ss_pred             EEeccccccccceEeeC---Ce-EEEEECCc-EEECCEEEECCCccHHHHHHHhcCCCCCcc
Confidence            99         887654   33 56777666 799999999999998 6777 888766543

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.71  E-value=1.5e-16  Score=123.00  Aligned_cols=69  Identities=13%  Similarity=0.014  Sum_probs=53.7

Q ss_pred             eeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec---C--cEEEeeEEEecCCcch-HHHhhhCCC
Q 030042          103 FIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---G--TIVKTKFLIGCDGIHS-TVAWWLGLS  174 (184)
Q Consensus       103 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g--~~~~a~~vI~a~G~~s-~~~~~~~~~  174 (184)
                      +++...+...+.+.+.  |++++++++|+++...+  +.. +.|.+.+   |  .++.||.||+|+|.++ .++++++..
T Consensus       166 ~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~--g~v-~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~  242 (561)
T 3da1_A          166 RTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQ--GKV-VGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSK  242 (561)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEET--TEE-EEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTCC
T ss_pred             eEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC--CeE-EEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCCC
Confidence            5677788888777663  89999999999999875  233 5566653   3  4799999999999999 678877765

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.70  E-value=6.1e-17  Score=117.67  Aligned_cols=119  Identities=18%  Similarity=0.262  Sum_probs=83.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |.|+++||+|||||++|+++|+.|++.|.+|+|||+.+..++..                   ..   . .+.  ..+  
T Consensus         1 m~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~-------------------~~---~-~~~--~~~--   53 (335)
T 2zbw_A            1 MAADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQL-------------------TA---L-YPE--KYI--   53 (335)
T ss_dssp             --CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHH-------------------HH---T-CTT--SEE--
T ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCee-------------------ec---c-CCC--cee--
Confidence            55567999999999999999999999999999999987654220                   00   0 000  000  


Q ss_pred             cCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042           81 LGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI  158 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI  158 (184)
                              +...       ....+.+.++.+.+.+.+.  +++++++++|+++...+   +. +.|.+.+|+++.+|.||
T Consensus        54 --------~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~v~~~~g~~~~~~~lv  114 (335)
T 2zbw_A           54 --------YDVA-------GFPKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREG---DL-FKVTTSQGNAYTAKAVI  114 (335)
T ss_dssp             --------CCST-------TCSSEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEET---TE-EEEEETTSCEEEEEEEE
T ss_pred             --------eccC-------CCCCCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECC---CE-EEEEECCCCEEEeCEEE
Confidence                    0000       0112445667776666553  68889999999998875   34 88888888889999999


Q ss_pred             ecCCcch
Q 030042          159 GCDGIHS  165 (184)
Q Consensus       159 ~a~G~~s  165 (184)
                      +|+|..+
T Consensus       115 ~AtG~~~  121 (335)
T 2zbw_A          115 IAAGVGA  121 (335)
T ss_dssp             ECCTTSE
T ss_pred             ECCCCCC
Confidence            9999865

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.70  E-value=5.3e-17  Score=119.96  Aligned_cols=73  Identities=14%  Similarity=0.178  Sum_probs=57.3

Q ss_pred             eeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhCCCCCcc
Q 030042          102 RFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLGLSEPLN  178 (184)
Q Consensus       102 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~~~~~~~  178 (184)
                      ..+++..+.+.|.+.+.  +++++++++|+++...+   +. +.|.+.+| ++.||.||+|+|.++. +.+.++...|..
T Consensus       159 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~---~~-~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~~~~~~  233 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDG---EA-LFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNNAFL  233 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSS---SS-EEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCCCCE
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEEC---CE-EEEEcCCc-eEEcCEEEECCChhHHHHHHhcCCCCcee
Confidence            45677788888877764  89999999999998765   34 67777777 8999999999999885 777777655544


Q ss_pred             c
Q 030042          179 V  179 (184)
Q Consensus       179 ~  179 (184)
                      +
T Consensus       234 ~  234 (382)
T 1ryi_A          234 P  234 (382)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.70  E-value=5.3e-16  Score=114.23  Aligned_cols=156  Identities=19%  Similarity=0.210  Sum_probs=93.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccce---e-e----ecc--cHH-HHHHHcCChHHHHhcCC--
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA---I-S----FAP--NAW-LALDALGVSHKLASIYP--   71 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~---~-~----~~~--~~~-~~~~~~~~~~~~~~~~~--   71 (184)
                      ++||+|||||++|+++|+.|+++|.+|+|+|+.....+.+.+   . .    +..  ... -..+....++.+.+...  
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~   81 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQMLWDELSRHNEDD   81 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSCCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHTTCSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCccceeeeccCCCchHHHHHHHHHHHHHHHHHhCCCc
Confidence            589999999999999999999999999999998655322111   0 1    111  011 11122223333331110  


Q ss_pred             ----CccceEEEecCCCc---------------eeee-------ecCCCC-------CCCCCCeeeeHHHHHHHHHhhCC
Q 030042           72 ----PVNRISVTNLGTGA---------------TQET-------SLTGKF-------GDGSGPRFIHRKKLLQTLADELP  118 (184)
Q Consensus        72 ----~~~~~~~~~~~~~~---------------~~~~-------~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~  118 (184)
                          ....+.+.. ....               ...+       .++...       ...+...++++..+.+.|.+.+.
T Consensus        82 ~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  160 (372)
T 2uzz_A           82 PIFVRSGVINLGP-ADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAK  160 (372)
T ss_dssp             CSEECCCEEEEEE-TTCHHHHHHHHHHHHTTCCEEEEEHHHHHHHCTTCCCCTTEEEEEESSCEEEEHHHHHHHHHHHHH
T ss_pred             cceeeeceEEEeC-CCcHHHHHHHHHHHHcCCCcEecCHHHHHhhCCCccCCCCceEEEeCCCcEEcHHHHHHHHHHHHH
Confidence                001111111 0000               0000       001000       00123456788888888887764


Q ss_pred             --CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          119 --NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       119 --~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                        +++++++++|+++...+   +. +.|.+.+| ++.||.||+|+|.++.
T Consensus       161 ~~G~~i~~~~~V~~i~~~~---~~-~~v~~~~g-~~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          161 EAGCAQLFNCPVTAIRHDD---DG-VTIETADG-EYQAKKAIVCAGTWVK  205 (372)
T ss_dssp             HTTCEEECSCCEEEEEECS---SS-EEEEESSC-EEEEEEEEECCGGGGG
T ss_pred             HCCCEEEcCCEEEEEEEcC---CE-EEEEECCC-eEEcCEEEEcCCccHH
Confidence              89999999999998765   34 78888887 5999999999999874

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.68  E-value=5.8e-16  Score=111.23  Aligned_cols=113  Identities=19%  Similarity=0.218  Sum_probs=72.1

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            2 AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         2 ~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      +|++|||+||||||+|+++|+.|+|.|.+|+|||+... ++.     +             .    ..+           
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~-gg~-----~-------------~----~~~-----------   48 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTN-RNR-----V-------------T----QNS-----------   48 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC-GGG-----G-------------S----SCB-----------
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC-CCe-----e-------------e----eec-----------
Confidence            47889999999999999999999999999999998642 111     0             0    000           


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC-C-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL-P-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG  159 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~  159 (184)
                             ..|..       ...+...++.+...+.. + +...+.+..++.+...++  .. +.+.+.+|+++.+|.||+
T Consensus        49 -------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~v~~~~g~~~~a~~lii  111 (304)
T 4fk1_A           49 -------HGFIT-------RDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQST--GL-FEIVTKDHTKYLAERVLL  111 (304)
T ss_dssp             -------CCSTT-------CTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTT--SC-EEEEETTCCEEEEEEEEE
T ss_pred             -------CCccC-------CCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCC--Cc-EEEEECCCCEEEeCEEEE
Confidence                   00000       00123445554444433 2 333444556666665541  33 888999999999999999


Q ss_pred             cCCcch
Q 030042          160 CDGIHS  165 (184)
Q Consensus       160 a~G~~s  165 (184)
                      |||+..
T Consensus       112 ATGs~p  117 (304)
T 4fk1_A          112 ATGMQE  117 (304)
T ss_dssp             CCCCEE
T ss_pred             ccCCcc
Confidence            999754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.68  E-value=2.7e-16  Score=118.63  Aligned_cols=153  Identities=18%  Similarity=0.147  Sum_probs=87.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhc-CCCcc------
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASI-YPPVN------   74 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------   74 (184)
                      ..+||+|||||++|+++|..|++.|.  +|+|||+.+..++...........      +++....... ..+..      
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~------~~ip~~~~~~~~~~~~~g~~~~   78 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNK------LPVPSTNPILTTEPIVGPAALP   78 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSC------CCSSBCCTTCCCCCBCCSSSCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcc------cccccccccccccccccccccC
Confidence            46899999999999999999999999  999999987665432111000000      0000000000 00000      


Q ss_pred             c--eEEEec--CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec
Q 030042           75 R--ISVTNL--GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD  148 (184)
Q Consensus        75 ~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~  148 (184)
                      .  ......  .+.......|...........+..+..+.+++.+.+.  +..++++++|+++...+   +. |.|.+.+
T Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~---~~-~~V~~~~  154 (447)
T 2gv8_A           79 VYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD---GS-WVVTYKG  154 (447)
T ss_dssp             BCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET---TE-EEEEEEE
T ss_pred             CccCchhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCC---Ce-EEEEEee
Confidence            0  000000  0000000111111101111234567777777777654  56788999999998765   44 7787765


Q ss_pred             ---Cc---EEEeeEEEecCCcchH
Q 030042          149 ---GT---IVKTKFLIGCDGIHST  166 (184)
Q Consensus       149 ---g~---~~~a~~vI~a~G~~s~  166 (184)
                         |+   ++.+|.||+|+|.+|.
T Consensus       155 ~~~G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          155 TKAGSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             SSTTCCEEEEEESEEEECCCSSSS
T ss_pred             cCCCCeeEEEEeCEEEECCCCCCC
Confidence               66   7999999999999763

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.68  E-value=1.3e-15  Score=101.42  Aligned_cols=116  Identities=23%  Similarity=0.327  Sum_probs=83.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      +|++|||||++|+.+|..|++.|.+|+++|+.+......                          ...            
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~--------------------------~~~------------   43 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGV--------------------------SRV------------   43 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTC--------------------------SCC------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCc--------------------------hhh------------
Confidence            799999999999999999999999999999976321100                          000            


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                         ..+...    +  ..+...++.+.+.+.+.  +++++++ +|++++..+   +. +.+.+++| ++.+|.||+|+|.
T Consensus        44 ---~~~~~~----~--~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~---~~-~~v~~~~g-~i~ad~vI~A~G~  108 (180)
T 2ywl_A           44 ---PNYPGL----L--DEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMG---GV-FEVETEEG-VEKAERLLLCTHK  108 (180)
T ss_dssp             ---CCSTTC----T--TCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECS---SS-EEEECSSC-EEEEEEEEECCTT
T ss_pred             ---hccCCC----c--CCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcC---CE-EEEEECCC-EEEECEEEECCCC
Confidence               000000    0  01234556666655553  8999999 999998765   44 78888888 8999999999999


Q ss_pred             chHHHhhhCCC
Q 030042          164 HSTVAWWLGLS  174 (184)
Q Consensus       164 ~s~~~~~~~~~  174 (184)
                      .+.+++.++++
T Consensus       109 ~~~~~~~~g~~  119 (180)
T 2ywl_A          109 DPTLPSLLGLT  119 (180)
T ss_dssp             CCHHHHHHTCC
T ss_pred             CCCccccCCCC
Confidence            98887777764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.68  E-value=1.7e-16  Score=122.00  Aligned_cols=135  Identities=19%  Similarity=0.293  Sum_probs=88.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHH-hCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            4 VEKDVVIIGAGIAGLATALALK-RLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~-~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      .++||+|||||++|+++|+.|+ +.|.+|+|+|+.+..++......+.          ++            ......  
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~yp----------g~------------~~d~~s--   62 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYP----------GA------------LSDTES--   62 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCT----------TC------------EEEEEG--
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCC----------Cc------------eecCCc--
Confidence            3589999999999999999999 8999999999988766432110000          00            000000  


Q ss_pred             CCceeeeecCCC--CCCCCCCeeeeHHHHHHHHHhhCC--CC--eeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042           83 TGATQETSLTGK--FGDGSGPRFIHRKKLLQTLADELP--NG--TIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKF  156 (184)
Q Consensus        83 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~--~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~  156 (184)
                      .  ...+.+...  ...........+.++.+++.+.+.  ++  +++++++|+++..+++ ... |.|.+.+|+++.||+
T Consensus        63 ~--~~~~~~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~-~~~-~~V~~~~G~~i~ad~  138 (540)
T 3gwf_A           63 H--LYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDD-ENL-WEVTTDHGEVYRAKY  138 (540)
T ss_dssp             G--GSSCCSCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETT-TTE-EEEEETTSCEEEEEE
T ss_pred             c--eeeeccccccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCC-CCE-EEEEEcCCCEEEeCE
Confidence            0  000000000  001112235667777777766553  55  7999999999998762 124 899999999999999


Q ss_pred             EEecCCcchH
Q 030042          157 LIGCDGIHST  166 (184)
Q Consensus       157 vI~a~G~~s~  166 (184)
                      ||+|+|..|.
T Consensus       139 lV~AtG~~s~  148 (540)
T 3gwf_A          139 VVNAVGLLSA  148 (540)
T ss_dssp             EEECCCSCCS
T ss_pred             EEECCccccc
Confidence            9999997653

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.68  E-value=6.9e-17  Score=121.85  Aligned_cols=74  Identities=16%  Similarity=0.201  Sum_probs=57.7

Q ss_pred             eeeeHHHHHHHHHhhCC--CCeeeeCceEEEEec---------------cCCCCCcceEEEEecCcEE--EeeEEEecCC
Q 030042          102 RFIHRKKLLQTLADELP--NGTIHFSSKIAAIDS---------------QTHDGSSPVFIHLVDGTIV--KTKFLIGCDG  162 (184)
Q Consensus       102 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~---------------~~~~~~~~~~v~~~~g~~~--~a~~vI~a~G  162 (184)
                      ..+++.++.+.|.+.+.  |++++.+++|+++..               .+   ...+.|.+.+| ++  .||.||+|+|
T Consensus       176 ~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~---~~v~~V~t~~g-~i~~~Ad~VV~AtG  251 (448)
T 3axb_A          176 GFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE---ARASAAVLSDG-TRVEVGEKLVVAAG  251 (448)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC---EEEEEEEETTS-CEEEEEEEEEECCG
T ss_pred             eEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCC---CceEEEEeCCC-EEeecCCEEEECCC
Confidence            45677788888887764  899999999999987               32   22256788787 68  9999999999


Q ss_pred             cchH-HHhhhCCCCCccc
Q 030042          163 IHST-VAWWLGLSEPLNV  179 (184)
Q Consensus       163 ~~s~-~~~~~~~~~~~~~  179 (184)
                      .++. +.+.++...|.++
T Consensus       252 ~~s~~l~~~~g~~~~~~p  269 (448)
T 3axb_A          252 VWSNRLLNPLGIDTFSRP  269 (448)
T ss_dssp             GGHHHHHGGGTCCCSEEE
T ss_pred             cCHHHHHHHcCCCCcccc
Confidence            9985 7777777766655

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.68  E-value=4.2e-16  Score=119.60  Aligned_cols=157  Identities=16%  Similarity=0.281  Sum_probs=87.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHH--H----HhcCCCccceEE
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK--L----ASIYPPVNRISV   78 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~   78 (184)
                      .+||+|||||++|+++|+.|++.|++|+|+|+.+..+.....      .........+...  +    .......+....
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~------~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~  180 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKD------TFGFWRKRTLNPESNVQFGEGGAGTFSDGKLY  180 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHH------HHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccc------hhcccccccccccccceeccCCcccccCCceE
Confidence            479999999999999999999999999999998653210000      0000000000000  0    000000000000


Q ss_pred             EecCC---------------CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcc
Q 030042           79 TNLGT---------------GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSP  141 (184)
Q Consensus        79 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~  141 (184)
                      .....               +......+...    +.........+.+.|.+.+.  +++++++++|+++...+  +.. 
T Consensus       181 ~~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~----p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~--~~v-  253 (549)
T 3nlc_A          181 SQVKDPNFYGRKVITEFVEAGAPEEILYVSK----PHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMED--GQI-  253 (549)
T ss_dssp             CCSCCTTCHHHHHHHHHHHTTCCGGGGTBSS----CCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESS--SBE-
T ss_pred             EEeccccccHHHHHHHHHHcCCCceEeeccc----cccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeC--CEE-
Confidence            00000               00000000000    11122334566666666553  89999999999998765  233 


Q ss_pred             eEEEEecCcEEEeeEEEecCCcchH----HHhhhCCC
Q 030042          142 VFIHLVDGTIVKTKFLIGCDGIHST----VAWWLGLS  174 (184)
Q Consensus       142 ~~v~~~~g~~~~a~~vI~a~G~~s~----~~~~~~~~  174 (184)
                      +.|.+.+|+++.||.||+|+|+++.    ..+..++.
T Consensus       254 ~gV~l~~G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~  290 (549)
T 3nlc_A          254 TGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHERGVY  290 (549)
T ss_dssp             EEEEETTSCEEECSCEEECCCTTCHHHHHHHHHTTCC
T ss_pred             EEEEECCCCEEECCEEEECCCCChhhHHHHHHHcCCC
Confidence            6688899989999999999999884    33444554

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.68  E-value=6.4e-16  Score=119.71  Aligned_cols=156  Identities=18%  Similarity=0.183  Sum_probs=89.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc--eeeecccHHHHHHHcCCh------------------
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA--AISFAPNAWLALDALGVS------------------   63 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------------------   63 (184)
                      .++||+|||||++|+++|+.|++.|.+|+||||.+..++.+.  +-.+........+..++.                  
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~  199 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN  199 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            468999999999999999999999999999999887654321  111111111111111111                  


Q ss_pred             ----------------HHHHhcCCCccceEEEecCCCce-eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeee
Q 030042           64 ----------------HKLASIYPPVNRISVTNLGTGAT-QETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHF  124 (184)
Q Consensus        64 ----------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~  124 (184)
                                      +.+.....++...   ....+.. .....       +.........+.+.|.+.+.  ++++++
T Consensus       200 ~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~---~~~~g~~~~r~~~-------~~~~~~~~~~l~~~L~~~~~~~gv~i~~  269 (566)
T 1qo8_A          200 DIKLVTILAEQSADGVQWLESLGANLDDL---KRSGGARVDRTHR-------PHGGKSSGPEIIDTLRKAAKEQGIDTRL  269 (566)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEE---ECCTTCSSCCEEE-------CSSSSCHHHHHHHHHHHHHHHTTCCEEC
T ss_pred             CHHHHHHHHhccHHHHHHHHhcCCccccc---cccCCCCCCceee-------cCCCCCCHHHHHHHHHHHHHhcCCEEEe
Confidence                            1111112221110   0000000 00000       00011345667777776653  899999


Q ss_pred             CceEEEEeccCCCCCcceEEEE--ecCc--EEEeeEEEecCCcchHHHhhh
Q 030042          125 SSKIAAIDSQTHDGSSPVFIHL--VDGT--IVKTKFLIGCDGIHSTVAWWL  171 (184)
Q Consensus       125 ~~~v~~~~~~~~~~~~~~~v~~--~~g~--~~~a~~vI~a~G~~s~~~~~~  171 (184)
                      +++|+++...++ +.. +.|.+  .+|+  ++.||.||+|||.++..++++
T Consensus       270 ~~~v~~l~~~~~-g~v-~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          270 NSRVVKLVVNDD-HSV-VGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMI  318 (566)
T ss_dssp             SEEEEEEEECTT-SBE-EEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHH
T ss_pred             CCEEEEEEECCC-CcE-EEEEEEeCCCcEEEEEcCEEEEecCCcccCHHHH
Confidence            999999987641 122 33443  3675  689999999999998765544

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.67  E-value=1.7e-16  Score=127.80  Aligned_cols=75  Identities=16%  Similarity=0.314  Sum_probs=59.0

Q ss_pred             CeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhCCCCCc
Q 030042          101 PRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLGLSEPL  177 (184)
Q Consensus       101 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~~~~~~  177 (184)
                      ...+++..+...|.+.+.  |++++.+++|+++...+   ...+.|.+.+| ++.||.||+|+|.++. +.+.++...|.
T Consensus       145 ~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~---~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g~~~pl  220 (830)
T 1pj5_A          145 DGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSG---GRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAVPL  220 (830)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET---TEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCCCC
T ss_pred             CceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeC---CEEEEEEECCc-EEECCEEEECCccchHHHHHHhCCCccc
Confidence            456788888888888774  89999999999998765   33256778777 7999999999999985 56677776665


Q ss_pred             cc
Q 030042          178 NV  179 (184)
Q Consensus       178 ~~  179 (184)
                      ++
T Consensus       221 ~p  222 (830)
T 1pj5_A          221 LP  222 (830)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.66  E-value=1.1e-15  Score=108.75  Aligned_cols=131  Identities=22%  Similarity=0.286  Sum_probs=81.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCCCCCccc-------eeeecccHHHHHHHcCChHHHHhcCCCccc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGLRGTGA-------AISFAPNAWLALDALGVSHKLASIYPPVNR   75 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
                      .++||+|||||++|+++|+.|+++ |.+|+|+|+.+.+++...       .........++++++|+         ++..
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~---------~~~~  108 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGV---------AYDE  108 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTC---------CCEE
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCC---------Cccc
Confidence            468999999999999999999997 999999999876643211       11111222233332221         1100


Q ss_pred             eEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEe-----
Q 030042           76 ISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLV-----  147 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-----  147 (184)
                             .              +......+...+...|.+.+   .+++++++++|+++...+  +.. ..+.+.     
T Consensus       109 -------~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~--~~v-~gv~~~~~~~~  164 (284)
T 1rp0_A          109 -------Q--------------DTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--NRV-GGVVTNWALVA  164 (284)
T ss_dssp             -------C--------------SSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEET--TEE-EEEEEEEHHHH
T ss_pred             -------C--------------CCEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecC--CeE-EEEEEeccccc
Confidence                   0              00000113455665555544   279999999999998765  222 234332     


Q ss_pred             ----cC-----cEEEeeEEEecCCcchHH
Q 030042          148 ----DG-----TIVKTKFLIGCDGIHSTV  167 (184)
Q Consensus       148 ----~g-----~~~~a~~vI~a~G~~s~~  167 (184)
                          ++     .++.||.||+|+|..|.+
T Consensus       165 ~~~~~g~~g~~~~i~ad~VV~AtG~~s~~  193 (284)
T 1rp0_A          165 QNHHTQSCMDPNVMEAKIVVSSCGHDGPF  193 (284)
T ss_dssp             TCTTTSSCCCCEEEEEEEEEECCCSSSTT
T ss_pred             cccCccccCceEEEECCEEEECCCCchHH
Confidence                22     579999999999976643

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.66  E-value=2.6e-16  Score=115.50  Aligned_cols=118  Identities=15%  Similarity=0.217  Sum_probs=83.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      +++||+|||||++|+++|+.|++.|++|+|||+.+.+++..                   ...    .+.  ...     
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~-------------------~~~----~~~--~~~-----   62 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQL-------------------AAL----YPE--KHI-----   62 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH-------------------HHT----CTT--SEE-----
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcc-------------------ccc----CCC--ccc-----
Confidence            36899999999999999999999999999999987654221                   000    000  000     


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                           +...       ....+.+.++.+.+.+.+.  +++++++++|+++...++  .. +.|.+.+|+++.+|+||+|+
T Consensus        63 -----~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~--~~-~~v~~~~g~~~~~~~li~At  127 (360)
T 3ab1_A           63 -----YDVA-------GFPEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDD--GT-FETRTNTGNVYRSRAVLIAA  127 (360)
T ss_dssp             -----CCST-------TCSSEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTT--SC-EEEEETTSCEEEEEEEEECC
T ss_pred             -----ccCC-------CCCCCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCC--ce-EEEEECCCcEEEeeEEEEcc
Confidence                 0000       0112456677777666553  788999999999988651  23 88999888889999999999


Q ss_pred             CcchH
Q 030042          162 GIHST  166 (184)
Q Consensus       162 G~~s~  166 (184)
                      |..+.
T Consensus       128 G~~~~  132 (360)
T 3ab1_A          128 GLGAF  132 (360)
T ss_dssp             TTCSC
T ss_pred             CCCcC
Confidence            98653

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.65  E-value=2.4e-15  Score=116.60  Aligned_cols=153  Identities=16%  Similarity=0.156  Sum_probs=87.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc----ceeeecccHHHHHHHcCCh----------------
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG----AAISFAPNAWLALDALGVS----------------   63 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----------------   63 (184)
                      +++||+|||||++|+++|+.|+++|.+|+|+||.+..++.+    .++....  ....+.+++.                
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~--~~~~~~~g~~ds~~~~~~~~~~~g~~  202 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAW--TDQQKAKKITDSPELMFEDTMKGGQN  202 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSS--CHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCC--CHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence            36899999999999999999999999999999988765432    1111111  1111112211                


Q ss_pred             ------------------HHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeee
Q 030042           64 ------------------HKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIH  123 (184)
Q Consensus        64 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~  123 (184)
                                        +.+...+.++..+  ..............       .........+.+.|.+.+.  +++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--~~~~g~~~~r~~~~-------~~g~~~g~~l~~~L~~~~~~~gv~i~  273 (571)
T 1y0p_A          203 INDPALVKVLSSHSKDSVDWMTAMGADLTDV--GMMGGASVNRAHRP-------TGGAGVGAHVVQVLYDNAVKRNIDLR  273 (571)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCCCCEE--ECCTTCSSCCEEES-------TTTCCHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCHHHHHHHHHccHHHHHHHHhcCCCCccC--cccCCcCCCeeEec-------CCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence                              1111111111110  00000000000000       0001234567777766653  89999


Q ss_pred             eCceEEEEeccCCCCCcceEEEEe--cCc--EEEeeEEEecCCcchHHHh
Q 030042          124 FSSKIAAIDSQTHDGSSPVFIHLV--DGT--IVKTKFLIGCDGIHSTVAW  169 (184)
Q Consensus       124 ~~~~v~~~~~~~~~~~~~~~v~~~--~g~--~~~a~~vI~a~G~~s~~~~  169 (184)
                      ++++|+++..+++ +.. +.|...  +|+  ++.||.||+|||.++..++
T Consensus       274 ~~~~v~~l~~~~~-g~v-~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~~  321 (571)
T 1y0p_A          274 MNTRGIEVLKDDK-GTV-KGILVKGMYKGYYWVKADAVILATGGFAKNNE  321 (571)
T ss_dssp             SSEEEEEEEECTT-SCE-EEEEEEETTTEEEEEECSEEEECCCCCTTCHH
T ss_pred             eCCEeeEeEEcCC-CeE-EEEEEEeCCCcEEEEECCeEEEeCCCcccCHH
Confidence            9999999987541 232 334443  665  6899999999999885433

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.65  E-value=6.9e-16  Score=106.78  Aligned_cols=125  Identities=17%  Similarity=0.134  Sum_probs=79.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      |+++||+|||||++|+.+|+.|++.|.+|+|+|+.....+.    ...+..    ..+.....+                
T Consensus         1 M~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~----~~~~~~----~~~~~~~~~----------------   56 (232)
T 2cul_A            1 MAAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMM----PFLPPK----PPFPPGSLL----------------   56 (232)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC----CSSCCC----SCCCTTCHH----------------
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCc----ccCccc----cccchhhHH----------------
Confidence            35799999999999999999999999999999997422111    011100    000000000                


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG  159 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~  159 (184)
                          ..+.  +  ..++     ++..+.+.+.+.+   ++++++ +++|+++...+  +.. +.|.+.+|+++.||+||+
T Consensus        57 ----~~~~--d--~~g~-----~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~--~~v-~~v~~~~g~~i~a~~VV~  119 (232)
T 2cul_A           57 ----ERAY--D--PKDE-----RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEG--NRV-VGVRTWEGPPARGEKVVL  119 (232)
T ss_dssp             ----HHHC--C--TTCC-----CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEET--TEE-EEEEETTSCCEECSEEEE
T ss_pred             ----hhhc--c--CCCC-----CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeC--CEE-EEEEECCCCEEECCEEEE
Confidence                0000  0  0111     4566666666655   267777 67999998765  232 567888888899999999


Q ss_pred             cCCcchHHH
Q 030042          160 CDGIHSTVA  168 (184)
Q Consensus       160 a~G~~s~~~  168 (184)
                      |+|.++..+
T Consensus       120 A~G~~s~~~  128 (232)
T 2cul_A          120 AVGSFLGAR  128 (232)
T ss_dssp             CCTTCSSCE
T ss_pred             CCCCChhhc
Confidence            999976533

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.64  E-value=3.5e-15  Score=114.06  Aligned_cols=67  Identities=9%  Similarity=0.101  Sum_probs=52.4

Q ss_pred             eeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe---cCc--EEEeeEEEecCCcchH-HHhh-hC
Q 030042          102 RFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DGT--IVKTKFLIGCDGIHST-VAWW-LG  172 (184)
Q Consensus       102 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g~--~~~a~~vI~a~G~~s~-~~~~-~~  172 (184)
                      .++++..+...+.+.+.  |++++.+++|+++...+   +. +.|.+.   +|+  ++.||.||+|+|.++. +.+. ++
T Consensus       144 g~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~---~~-~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~  219 (501)
T 2qcu_A          144 CWVDDARLVLANAQMVVRKGGEVLTRTRATSARREN---GL-WIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMH  219 (501)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEET---TE-EEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTC
T ss_pred             CEEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC---CE-EEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhcc
Confidence            35678888888887764  89999999999998865   44 667764   565  7999999999999985 5554 44

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.64  E-value=2.6e-16  Score=121.20  Aligned_cols=136  Identities=18%  Similarity=0.218  Sum_probs=86.6

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      +.++||+|||||++|+++|+.|++.|++|+|||+.+..++......++...      +......                
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~------~d~~~~~----------------   64 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCR------LDTESYA----------------   64 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCB------CSSCHHH----------------
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCcee------ecCchhh----------------
Confidence            346899999999999999999999999999999988776542100000000      0000000                


Q ss_pred             CCceeeeecCCC--CCCCCCCeeeeHHHHHHHHHhhCC--CC--eeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042           83 TGATQETSLTGK--FGDGSGPRFIHRKKLLQTLADELP--NG--TIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKF  156 (184)
Q Consensus        83 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~--~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~  156 (184)
                          ..+.|...  ..+..........++.+++.+.+.  ++  +++++++|+++..+++  ...|.|.+.+|+++.||+
T Consensus        65 ----y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~--~~~w~V~~~~G~~~~ad~  138 (545)
T 3uox_A           65 ----YGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVEN--DRLWEVTLDNEEVVTCRF  138 (545)
T ss_dssp             ----HCHHHHTTSSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGG--GTEEEEEETTTEEEEEEE
T ss_pred             ----cccccCcccccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCC--CCEEEEEECCCCEEEeCE
Confidence                00000000  001111223456667666665543  44  7899999999987652  223899999999999999


Q ss_pred             EEecCCcchH
Q 030042          157 LIGCDGIHST  166 (184)
Q Consensus       157 vI~a~G~~s~  166 (184)
                      ||+|+|..+.
T Consensus       139 lV~AtG~~s~  148 (545)
T 3uox_A          139 LISATGPLSA  148 (545)
T ss_dssp             EEECCCSCBC
T ss_pred             EEECcCCCCC
Confidence            9999997553

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.64  E-value=4.6e-16  Score=119.88  Aligned_cols=134  Identities=21%  Similarity=0.279  Sum_probs=85.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .++||+|||||++|+++|+.|++.|++|+|||+.+..++......+.          ++...+....             
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~yp----------g~~~dv~s~~-------------   76 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYP----------GARCDVESID-------------   76 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCT----------TCBCSSCTTT-------------
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCC----------CceeCCCchh-------------
Confidence            45899999999999999999999999999999988766431100000          0000000000             


Q ss_pred             CceeeeecCCC--CCCCCCCeeeeHHHHHHHHHhhCC--CC--eeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEE
Q 030042           84 GATQETSLTGK--FGDGSGPRFIHRKKLLQTLADELP--NG--TIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFL  157 (184)
Q Consensus        84 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~--~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~v  157 (184)
                         ....|...  ..+........+.++.+++.+.+.  ++  +++++++|+++..+++  ...|.|.+.+|+++.||+|
T Consensus        77 ---y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~--~~~w~V~~~~G~~i~ad~l  151 (549)
T 4ap3_A           77 ---YSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEE--GLRWTVRTDRGDEVSARFL  151 (549)
T ss_dssp             ---SSCCSCHHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETT--TTEEEEEETTCCEEEEEEE
T ss_pred             ---cccccccccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCC--CCEEEEEECCCCEEEeCEE
Confidence               00000000  000111123456677776665543  44  7899999999998763  2238999999999999999


Q ss_pred             EecCCcch
Q 030042          158 IGCDGIHS  165 (184)
Q Consensus       158 I~a~G~~s  165 (184)
                      |+|+|..|
T Consensus       152 V~AtG~~s  159 (549)
T 4ap3_A          152 VVAAGPLS  159 (549)
T ss_dssp             EECCCSEE
T ss_pred             EECcCCCC
Confidence            99999754

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.63  E-value=1.9e-15  Score=114.38  Aligned_cols=55  Identities=13%  Similarity=0.195  Sum_probs=45.2

Q ss_pred             HHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          108 KLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       108 ~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      .+.+.|.+.++.++|+++++|+++...+   ++ +.|.+.+|+++.||.||+|+..+..
T Consensus       236 ~l~~~l~~~l~~~~i~~~~~V~~i~~~~---~~-~~v~~~~g~~~~ad~vi~a~p~~~~  290 (470)
T 3i6d_A          236 TLVEEIEKQLKLTKVYKGTKVTKLSHSG---SC-YSLELDNGVTLDADSVIVTAPHKAA  290 (470)
T ss_dssp             HHHHHHHHTCCSEEEECSCCEEEEEECS---SS-EEEEESSSCEEEESEEEECSCHHHH
T ss_pred             HHHHHHHHhcCCCEEEeCCceEEEEEcC---Ce-EEEEECCCCEEECCEEEECCCHHHH
Confidence            5666777766446899999999999875   45 8899999988999999999987653

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.63  E-value=2.3e-15  Score=108.79  Aligned_cols=133  Identities=22%  Similarity=0.313  Sum_probs=82.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccc-------eeeecccHHHHHHHcCChHHHHhcCCCcc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGA-------AISFAPNAWLALDALGVSHKLASIYPPVN   74 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (184)
                      .++||+|||||++|+++|+.|+++  |.+|+|+|+...+++...       .....+....+++.+++.         +.
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~---------~~  148 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVP---------YE  148 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCC---------CE
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCc---------cc
Confidence            368999999999999999999997  999999999876653211       112223344444444331         11


Q ss_pred             ceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCC---------------
Q 030042           75 RISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTH---------------  136 (184)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~---------------  136 (184)
                      .       .              +......+..++.+.|.+.+   ++++++++++++++...++               
T Consensus       149 ~-------~--------------G~~~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~  207 (344)
T 3jsk_A          149 D-------E--------------GDYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAED  207 (344)
T ss_dssp             E-------C--------------SSEEEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC---------------
T ss_pred             c-------c--------------CCeEEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCccccccccccccccc
Confidence            0       0              00000112345555555543   3889999999999876541               


Q ss_pred             CCC-cceEEEEe--------------cCcEEEeeEEEecCCcchH
Q 030042          137 DGS-SPVFIHLV--------------DGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       137 ~~~-~~~~v~~~--------------~g~~~~a~~vI~a~G~~s~  166 (184)
                      .+. ....|.+.              +..+++|++||+|||+.+.
T Consensus       208 ~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~  252 (344)
T 3jsk_A          208 EAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGP  252 (344)
T ss_dssp             -CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSS
T ss_pred             CCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCch
Confidence            010 11222221              2247999999999999876

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.63  E-value=7.6e-16  Score=118.73  Aligned_cols=137  Identities=22%  Similarity=0.308  Sum_probs=84.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .++||+|||||++|+++|+.|++.|++|+|+|+.+..++......+.          ++.-.....   .....  . ..
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~p----------g~~~d~~~~---~~~~~--f-~~   78 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYP----------GARCDIESI---EYCYS--F-SE   78 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCT----------TCBCSSCTT---TSSCC--S-CH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCC----------ceeeccccc---ccccc--c-Ch
Confidence            35899999999999999999999999999999988776432100000          000000000   00000  0 00


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhh---CC-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADE---LP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG  159 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~  159 (184)
                      .....+.+        ......+.++.+++.+.   .. +.+++++++|+++..+++ ... |.|.+.+|+++.||+||+
T Consensus        79 ~~~~~~~~--------~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~-~~~-w~V~~~~G~~~~ad~vV~  148 (542)
T 1w4x_A           79 EVLQEWNW--------TERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEA-TNT-WTVDTNHGDRIRARYLIM  148 (542)
T ss_dssp             HHHHHCCC--------CBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETT-TTE-EEEEETTCCEEEEEEEEE
T ss_pred             hhhhccCc--------ccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCC-CCe-EEEEECCCCEEEeCEEEE
Confidence            00000001        11134456666665543   32 467999999999988752 123 889999998999999999


Q ss_pred             cCCcchH
Q 030042          160 CDGIHST  166 (184)
Q Consensus       160 a~G~~s~  166 (184)
                      |+|.+|.
T Consensus       149 AtG~~s~  155 (542)
T 1w4x_A          149 ASGQLSV  155 (542)
T ss_dssp             CCCSCCC
T ss_pred             CcCCCCC
Confidence            9998764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.62  E-value=5.4e-15  Score=106.62  Aligned_cols=109  Identities=17%  Similarity=0.219  Sum_probs=79.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ++||+|||||++|+++|+.|++.|.+|+|||+.  .++....                                    . 
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~------------------------------------~-   55 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE------------------------------------A-   55 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG------------------------------------C-
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc------------------------------------c-
Confidence            589999999999999999999999999999997  3322100                                    0 


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                       .....+..       .......++.+++.+.+.  ++++++ ++|+++...+   +. +.+.+.++.++.+|.||+|+|
T Consensus        56 -~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~---~~-~~v~~~~g~~~~~d~lvlAtG  122 (323)
T 3f8d_A           56 -GIVDDYLG-------LIEIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRG---DE-FVVKTKRKGEFKADSVILGIG  122 (323)
T ss_dssp             -CEECCSTT-------STTEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC-----C-EEEEESSSCEEEEEEEEECCC
T ss_pred             -ccccccCC-------CCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecC---CE-EEEEECCCCEEEcCEEEECcC
Confidence             00011111       112456677777666553  788888 8999998765   44 889999888999999999999


Q ss_pred             cch
Q 030042          163 IHS  165 (184)
Q Consensus       163 ~~s  165 (184)
                      ...
T Consensus       123 ~~~  125 (323)
T 3f8d_A          123 VKR  125 (323)
T ss_dssp             CEE
T ss_pred             CCC
Confidence            874

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.62  E-value=2.6e-15  Score=108.76  Aligned_cols=115  Identities=21%  Similarity=0.245  Sum_probs=83.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .++||+|||||++|+++|+.|++.|.+|+|+|+.+..++..                   ..   . .+  ....     
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~-------------------~~---~-~~--~~~~-----   55 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQL-------------------SA---L-YP--EKYI-----   55 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH-------------------HH---H-CT--TSEE-----
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee-------------------hh---c-CC--CceE-----
Confidence            35899999999999999999999999999999987754331                   00   0 00  0000     


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                           +.+.       ......+.++.+++.+.+.  +++++++++|+++...+  ... +.|.+.+|+ +.+|.||+|+
T Consensus        56 -----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~-~~v~~~~g~-~~~d~vVlAt  119 (332)
T 3lzw_A           56 -----YDVA-------GFPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQA--DGV-FKLVTNEET-HYSKTVIITA  119 (332)
T ss_dssp             -----CCST-------TCSSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECT--TSC-EEEEESSEE-EEEEEEEECC
T ss_pred             -----eccC-------CCCCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECC--CCc-EEEEECCCE-EEeCEEEECC
Confidence                 0011       1112456777777777664  78999999999998875  124 889998886 9999999999


Q ss_pred             Ccc
Q 030042          162 GIH  164 (184)
Q Consensus       162 G~~  164 (184)
                      |..
T Consensus       120 G~~  122 (332)
T 3lzw_A          120 GNG  122 (332)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            984

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.61  E-value=3e-15  Score=108.63  Aligned_cols=114  Identities=18%  Similarity=0.207  Sum_probs=77.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc----CCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEE
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS----DGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISV   78 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (184)
                      |.++||+|||||++|+++|+.|++.|++|+|+|+.    ...++.-                   .    ...     . 
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~-------------------~----~~~-----~-   56 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQL-------------------T----TTT-----D-   56 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGG-------------------G----GCS-----E-
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCcee-------------------e----ecc-----c-
Confidence            45689999999999999999999999999999982    2211110                   0    000     0 


Q ss_pred             EecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042           79 TNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKF  156 (184)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~  156 (184)
                               ...++     +. ...+.+.++.+.+.+.+.  ++++++++ |+++...+   +. +.|.+ +++++.+|.
T Consensus        57 ---------~~~~~-----~~-~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~---~~-~~v~~-~~~~~~~~~  115 (333)
T 1vdc_A           57 ---------VENFP-----GF-PEGILGVELTDKFRKQSERFGTTIFTET-VTKVDFSS---KP-FKLFT-DSKAILADA  115 (333)
T ss_dssp             ---------ECCST-----TC-TTCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSS---SS-EEEEC-SSEEEEEEE
T ss_pred             ---------cccCC-----CC-ccCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcC---CE-EEEEE-CCcEEEcCE
Confidence                     00000     00 012455667766665553  78888886 88888764   34 77877 777899999


Q ss_pred             EEecCCcchH
Q 030042          157 LIGCDGIHST  166 (184)
Q Consensus       157 vI~a~G~~s~  166 (184)
                      ||+|+|.++.
T Consensus       116 vv~A~G~~~~  125 (333)
T 1vdc_A          116 VILAIGAVAK  125 (333)
T ss_dssp             EEECCCEEEC
T ss_pred             EEECCCCCcC
Confidence            9999998764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.61  E-value=1.4e-15  Score=117.96  Aligned_cols=149  Identities=23%  Similarity=0.202  Sum_probs=88.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC-CCCCccceeeec----ccHHHHHHHcCC-hHHHHhcCCCccceE
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD-GLRGTGAAISFA----PNAWLALDALGV-SHKLASIYPPVNRIS   77 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~-~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~   77 (184)
                      .++||+|||||++|+++|+.|++.|.+|+|+|+.. ..+..++.....    ....+.+..++- ...+...    ..+.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~----~gi~  102 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQ----AGIQ  102 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHH----HEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhh----cccc
Confidence            36899999999999999999999999999999974 333322221111    112222222221 1111110    1111


Q ss_pred             EEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042           78 VTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKT  154 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a  154 (184)
                      +.......       +...+. ....+++..+.+.+.+.+   .++++ ++++|+++...+  +.. +.|.+.+|.++.|
T Consensus       103 f~~l~~~k-------gpav~~-~r~~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~--g~V-~GV~t~dG~~I~A  170 (651)
T 3ces_A          103 FRILNASK-------GPAVRA-TRAQADRVLYRQAVRTALENQPNLMI-FQQAVEDLIVEN--DRV-VGAVTQMGLKFRA  170 (651)
T ss_dssp             EEEESTTS-------CGGGCE-EEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEESS--SBE-EEEEETTSEEEEE
T ss_pred             hhhhhccc-------Cccccc-chhhCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEecC--CEE-EEEEECCCCEEEC
Confidence            11111000       000000 112466666666666544   37788 678999998754  233 5788888888999


Q ss_pred             eEEEecCCcchHHH
Q 030042          155 KFLIGCDGIHSTVA  168 (184)
Q Consensus       155 ~~vI~a~G~~s~~~  168 (184)
                      |.||+|||.++..+
T Consensus       171 d~VVLATGt~s~~~  184 (651)
T 3ces_A          171 KAVVLTVGTFLDGK  184 (651)
T ss_dssp             EEEEECCSTTTCCE
T ss_pred             CEEEEcCCCCccCc
Confidence            99999999987543

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.60  E-value=1.1e-14  Score=104.90  Aligned_cols=38  Identities=32%  Similarity=0.565  Sum_probs=33.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |+..+|||+||||||+|+++|+.|++.|.+|+|||+..
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~   39 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI   39 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            88778999999999999999999999999999999853

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.60  E-value=1.3e-14  Score=103.60  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=77.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ++||+|||||++|+++|..|++.|.+|+|+|+.+..+...                                      . 
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~--------------------------------------~-   42 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFA--------------------------------------S-   42 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGC--------------------------------------S-
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccc--------------------------------------h-
Confidence            4899999999999999999999999999999864221100                                      0 


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                        ....+.       ........++.+.+.+.+.   +++++ +++|+++...+   +. +.|.+.+++++.+|.||+|+
T Consensus        43 --~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~~i~~~~---~~-~~v~~~~g~~~~~d~vviAt  108 (297)
T 3fbs_A           43 --HSHGFL-------GQDGKAPGEIIAEARRQIERYPTIHWV-EGRVTDAKGSF---GE-FIVEIDGGRRETAGRLILAM  108 (297)
T ss_dssp             --CCCSST-------TCTTCCHHHHHHHHHHHHTTCTTEEEE-ESCEEEEEEET---TE-EEEEETTSCEEEEEEEEECC
T ss_pred             --hhcCCc-------CCCCCCHHHHHHHHHHHHHhcCCeEEE-EeEEEEEEEcC---Ce-EEEEECCCCEEEcCEEEECC
Confidence              000000       0112345677777766654   34444 56999998875   44 88999999899999999999


Q ss_pred             CcchH
Q 030042          162 GIHST  166 (184)
Q Consensus       162 G~~s~  166 (184)
                      |..+.
T Consensus       109 G~~~~  113 (297)
T 3fbs_A          109 GVTDE  113 (297)
T ss_dssp             CCEEE
T ss_pred             CCCCC
Confidence            98654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.60  E-value=1.6e-14  Score=110.68  Aligned_cols=40  Identities=45%  Similarity=0.749  Sum_probs=36.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .++||+|||+|++|+++|+.|+++|.+|+|+||.+..++.
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~   79 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGA   79 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            4689999999999999999999999999999998877543

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.60  E-value=1.8e-14  Score=105.11  Aligned_cols=143  Identities=14%  Similarity=0.131  Sum_probs=82.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHh---CCCCeEEEeccCCCCCccceee---------------e--cccHHHHHHHcCChHH
Q 030042            6 KDVVIIGAGIAGLATALALKR---LGVEPLVLEKSDGLRGTGAAIS---------------F--APNAWLALDALGVSHK   65 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~---~g~~v~vie~~~~~~~~~~~~~---------------~--~~~~~~~~~~~~~~~~   65 (184)
                      +||+|||||++|+++|+.|++   .|++|+|+||....++......               +  .+.....+..+  ...
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~--~~~   79 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRF--YDE   79 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHH--HHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHH--HHH
Confidence            599999999999999999999   9999999999876654221110               0  11100011000  111


Q ss_pred             HHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEE
Q 030042           66 LASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIH  145 (184)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~  145 (184)
                      +........................+...  .       ....+.+.+.+.. +++|+++++|+++...+   ++ |.|.
T Consensus        80 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~-------g~~~l~~~l~~~~-g~~i~~~~~V~~i~~~~---~~-~~v~  145 (342)
T 3qj4_A           80 LLAYGVLRPLSSPIEGMVMKEGDCNFVAP--Q-------GISSIIKHYLKES-GAEVYFRHRVTQINLRD---DK-WEVS  145 (342)
T ss_dssp             HHHTTSCEECCSCEETCCC--CCEEEECT--T-------CTTHHHHHHHHHH-TCEEESSCCEEEEEECS---SS-EEEE
T ss_pred             HHhCCCeecCchhhcceeccCCccceecC--C-------CHHHHHHHHHHhc-CCEEEeCCEEEEEEEcC---CE-EEEE
Confidence            11111100000000000000000000000  0       1245666666655 78999999999999865   45 8899


Q ss_pred             EecCcEEEeeEEEecCCcc
Q 030042          146 LVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus       146 ~~~g~~~~a~~vI~a~G~~  164 (184)
                      +.+|+++.+|.||+|+...
T Consensus       146 ~~~g~~~~ad~vV~A~p~~  164 (342)
T 3qj4_A          146 KQTGSPEQFDLIVLTMPVP  164 (342)
T ss_dssp             ESSSCCEEESEEEECSCHH
T ss_pred             ECCCCEEEcCEEEECCCHH
Confidence            9888778999999999754

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.59  E-value=4.5e-15  Score=114.97  Aligned_cols=68  Identities=12%  Similarity=-0.014  Sum_probs=49.8

Q ss_pred             eeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe---cCc--EEEeeEEEecCCcch-HHHhhhCC
Q 030042          103 FIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DGT--IVKTKFLIGCDGIHS-TVAWWLGL  173 (184)
Q Consensus       103 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g~--~~~a~~vI~a~G~~s-~~~~~~~~  173 (184)
                      .++...+...+.+.+.  |++++.+++|+++...+  +.. +.|.+.   +++  ++.||.||+|+|.++ .+.+..+.
T Consensus       184 ~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~--~~v-~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g~  259 (571)
T 2rgh_A          184 RNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEG--DQI-VGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNFT  259 (571)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET--TEE-EEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCCS
T ss_pred             eEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeC--CEE-EEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhcc
Confidence            4566777777766553  89999999999999875  232 455543   343  799999999999998 46666654

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.58  E-value=6e-15  Score=114.08  Aligned_cols=147  Identities=23%  Similarity=0.211  Sum_probs=87.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC-CCCCccceeeec----ccHHHHHHHcC-ChHHHHhcCCCccceE
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD-GLRGTGAAISFA----PNAWLALDALG-VSHKLASIYPPVNRIS   77 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~-~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~   77 (184)
                      .++||+|||||++|+.+|+.|++.|.+|+|+|+.. ..+..++.....    ....+.++.++ .+..+...    ..+.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~----~gi~  101 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQ----TGIQ  101 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHH----HEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhh----cccc
Confidence            35899999999999999999999999999999974 333322211111    11122222232 22221111    0111


Q ss_pred             EEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042           78 VTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKT  154 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a  154 (184)
                      +.......       +...+. .....++..+.+.+.+.+   +++++ ++++|+++...+  +.. +.|.+.+|..+.|
T Consensus       102 f~~l~~~k-------Gpav~~-~r~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~--g~V-~GV~t~dG~~i~A  169 (637)
T 2zxi_A          102 FKMLNTRK-------GKAVQS-PRAQADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKN--NQV-VGVRTNLGVEYKT  169 (637)
T ss_dssp             EEEESTTS-------CGGGCE-EEEEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESS--SBE-EEEEETTSCEEEC
T ss_pred             eeeccccc-------Cccccc-hhhhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecC--CEE-EEEEECCCcEEEe
Confidence            11111000       000000 112456677777666654   37788 578999998765  233 5688889989999


Q ss_pred             eEEEecCCcchH
Q 030042          155 KFLIGCDGIHST  166 (184)
Q Consensus       155 ~~vI~a~G~~s~  166 (184)
                      |.||+|||.++.
T Consensus       170 daVVLATG~~s~  181 (637)
T 2zxi_A          170 KAVVVTTGTFLN  181 (637)
T ss_dssp             SEEEECCTTCBT
T ss_pred             CEEEEccCCCcc
Confidence            999999998754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.58  E-value=2.3e-14  Score=103.09  Aligned_cols=119  Identities=24%  Similarity=0.283  Sum_probs=74.1

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |+ ..|||+||||||+|+++|+.|++.|++|+|||+....+....+. +.                       ....+  
T Consensus         1 M~-~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~-~~-----------------------~~~~i--   53 (314)
T 4a5l_A            1 MS-NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQ-LT-----------------------TTTII--   53 (314)
T ss_dssp             -C-CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCG-GG-----------------------GSSEE--
T ss_pred             CC-CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCC-cC-----------------------ChHHh--
Confidence            76 46999999999999999999999999999999865321110000 00                       00000  


Q ss_pred             cCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042           81 LGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI  158 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI  158 (184)
                              ..+.     +. ...+...++.+.+.+...  +..+.. ..+.......   +. ..+.+.++.++.+|.||
T Consensus        54 --------~~~~-----g~-~~~i~~~~l~~~~~~~~~~~~~~~~~-~~v~~~~~~~---~~-~~~~~~~~~~~~~~~li  114 (314)
T 4a5l_A           54 --------ENFP-----GF-PNGIDGNELMMNMRTQSEKYGTTIIT-ETIDHVDFST---QP-FKLFTEEGKEVLTKSVI  114 (314)
T ss_dssp             --------CCST-----TC-TTCEEHHHHHHHHHHHHHHTTCEEEC-CCEEEEECSS---SS-EEEEETTCCEEEEEEEE
T ss_pred             --------hhcc-----CC-cccCCHHHHHHHHHHHHhhcCcEEEE-eEEEEeecCC---Cc-eEEEECCCeEEEEeEEE
Confidence                    0011     11 112445666666555543  455544 4555555543   33 67778888899999999


Q ss_pred             ecCCcch
Q 030042          159 GCDGIHS  165 (184)
Q Consensus       159 ~a~G~~s  165 (184)
                      +|||+..
T Consensus       115 iATG~~~  121 (314)
T 4a5l_A          115 IATGATA  121 (314)
T ss_dssp             ECCCEEE
T ss_pred             Ecccccc
Confidence            9999754

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.58  E-value=6e-15  Score=114.33  Aligned_cols=147  Identities=17%  Similarity=0.176  Sum_probs=86.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC-CCCCccceeeecc-cHHHHHHHc---C-ChHHHHhcCCCccceE
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD-GLRGTGAAISFAP-NAWLALDAL---G-VSHKLASIYPPVNRIS   77 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~-~~~~~~~~~~~~~-~~~~~~~~~---~-~~~~~~~~~~~~~~~~   77 (184)
                      .+|||+|||||++|+.+|+.|++.|.+|+|+|+.. ..+..++...... ...+.++++   + +.......    ..+.
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~----~gi~   95 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDA----TGIQ   95 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHH----HEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHh----cCCc
Confidence            46899999999999999999999999999999975 3333322221111 112222222   1 11111110    0111


Q ss_pred             EEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042           78 VTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKT  154 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a  154 (184)
                      +.......       +.. .......+++..+.+.+.+.+   ++++++ +.+|+++...+   ..+..|.+.+|+++.|
T Consensus        96 f~~l~~~k-------gpa-v~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~---g~V~GV~t~~G~~i~A  163 (641)
T 3cp8_A           96 FRMLNRSK-------GPA-MHSPRAQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANS---GKFSSVTVRSGRAIQA  163 (641)
T ss_dssp             EEEECSSS-------CTT-TCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEET---TEEEEEEETTSCEEEE
T ss_pred             hhhccccc-------Ccc-ccchhhhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecC---CEEEEEEECCCcEEEe
Confidence            11100000       000 000113567777777666654   377874 56999988764   3314488888889999


Q ss_pred             eEEEecCCcchH
Q 030042          155 KFLIGCDGIHST  166 (184)
Q Consensus       155 ~~vI~a~G~~s~  166 (184)
                      |.||+|||.++.
T Consensus       164 d~VVLATG~~s~  175 (641)
T 3cp8_A          164 KAAILACGTFLN  175 (641)
T ss_dssp             EEEEECCTTCBT
T ss_pred             CEEEECcCCCCC
Confidence            999999998764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.57  E-value=4.4e-15  Score=109.15  Aligned_cols=134  Identities=19%  Similarity=0.230  Sum_probs=80.3

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      |+++||+|||||++|+++|+.|++.|. +|+|||+.+ .++....   .+...             ....+.      . 
T Consensus         2 m~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~---~~~~~-------------~~~~~~------~-   57 (369)
T 3d1c_A            2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKH---WPKST-------------RTITPS------F-   57 (369)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHT---SCTTC-------------BCSSCC------C-
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCcccc---Ccccc-------------cccCcc------h-
Confidence            346899999999999999999999999 999999986 4321000   00000             000000      0 


Q ss_pred             CCCceeeeecCCCCCCC-C----CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042           82 GTGATQETSLTGKFGDG-S----GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKT  154 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~-~----~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a  154 (184)
                      .........+....... +    ....+.+..+.+++.+.+.  +++++++++|+++...+   +. +.|.+.++ ++.+
T Consensus        58 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~---~~-~~v~~~~g-~~~~  132 (369)
T 3d1c_A           58 TSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADD---AY-YTIATTTE-TYHA  132 (369)
T ss_dssp             CCGGGTCCCTTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECS---SS-EEEEESSC-CEEE
T ss_pred             hcccCCchhhhhccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECC---Ce-EEEEeCCC-EEEe
Confidence            00000000000000000 0    0113445566665554432  78999999999998765   34 88888877 5899


Q ss_pred             eEEEecCCcch
Q 030042          155 KFLIGCDGIHS  165 (184)
Q Consensus       155 ~~vI~a~G~~s  165 (184)
                      |.||+|+|.++
T Consensus       133 d~vVlAtG~~~  143 (369)
T 3d1c_A          133 DYIFVATGDYN  143 (369)
T ss_dssp             EEEEECCCSTT
T ss_pred             CEEEECCCCCC
Confidence            99999999875

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.57  E-value=4.3e-14  Score=101.64  Aligned_cols=111  Identities=22%  Similarity=0.278  Sum_probs=77.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      +||+|||||++|+++|+.|++.|. +|+|+|+. ..++....   .                    ..            
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~---~--------------------~~------------   45 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITG---S--------------------SE------------   45 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGG---C--------------------SC------------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccc---c--------------------cc------------
Confidence            799999999999999999999999 99999995 33222100   0                    00            


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                         ...++     +. ...+++.++.+.+.+.+.  ++++++ ++|+++...+   +. +.+.+.+|+++.+|.||+|+|
T Consensus        46 ---~~~~~-----~~-~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~---~~-~~v~~~~g~~~~~~~vv~AtG  111 (311)
T 2q0l_A           46 ---IENYP-----GV-KEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKD---SH-FVILAEDGKTFEAKSVIIATG  111 (311)
T ss_dssp             ---BCCST-----TC-CSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEET---TE-EEEEETTSCEEEEEEEEECCC
T ss_pred             ---cccCC-----CC-cccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcC---CE-EEEEEcCCCEEECCEEEECCC
Confidence               00000     00 012455666666665543  788877 7899998765   44 778788888999999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      .++.
T Consensus       112 ~~~~  115 (311)
T 2q0l_A          112 GSPK  115 (311)
T ss_dssp             EEEC
T ss_pred             CCCC
Confidence            8664

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.56  E-value=3.2e-14  Score=102.23  Aligned_cols=114  Identities=19%  Similarity=0.258  Sum_probs=78.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ++||+|||||++|+++|+.|++.|.+|+|+|+.  .++...                   .         ....      
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~--~gG~~~-------------------~---------~~~~------   44 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL-------------------D---------TVDI------   44 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG-------------------G---------CCEE------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC--CCceec-------------------c---------cccc------
Confidence            479999999999999999999999999999863  221100                   0         0000      


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                          ..+.       ......+..+.+.+.+.+.  +++++++++|+++....+++.. +.|.+.+|+++.+|.||+|+|
T Consensus        45 ----~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~-~~v~~~~g~~~~~~~lv~AtG  112 (310)
T 1fl2_A           45 ----ENYI-------SVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGL-HQIETASGAVLKARSIIVATG  112 (310)
T ss_dssp             ----CCBT-------TBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCC-EEEEETTSCEEEEEEEEECCC
T ss_pred             ----cccc-------CcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCce-EEEEECCCCEEEeCEEEECcC
Confidence                0000       0112345566666655543  7899999999999765321224 888888888899999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ..+.
T Consensus       113 ~~~~  116 (310)
T 1fl2_A          113 AKWR  116 (310)
T ss_dssp             EEEC
T ss_pred             CCcC
Confidence            8653

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.56  E-value=4.2e-14  Score=101.64  Aligned_cols=134  Identities=19%  Similarity=0.286  Sum_probs=82.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccc-------eeeecccHHHHHHHcCChHHHHhcCCCccc
Q 030042            5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGA-------AISFAPNAWLALDALGVSHKLASIYPPVNR   75 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
                      ++||+|||||++|+++|+.|++.  |.+|+|+|+.+.+++...       .....+....++..+++.         +..
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~---------~~~  135 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIP---------YED  135 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCC---------CEE
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcc---------ccc
Confidence            57999999999999999999998  999999999887653211       112223333344333221         100


Q ss_pred             eEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCC--C--CcceEEEEe-
Q 030042           76 ISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHD--G--SSPVFIHLV-  147 (184)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~--~--~~~~~v~~~-  147 (184)
                             .              +......+...+...|.+.+   ++++++.+++|+++..+++.  +  .. ..|.+. 
T Consensus       136 -------~--------------g~~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV-~GVvv~~  193 (326)
T 2gjc_A          136 -------E--------------GDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTV-AGVVTNW  193 (326)
T ss_dssp             -------C--------------SSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CE-EEEEEEE
T ss_pred             -------C--------------CCeEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEE-EEEEecc
Confidence                   0              00011113345566665543   38899999999999876311  1  22 333321 


Q ss_pred             -------------cCcEEEe---------------eEEEecCCcchHHHh
Q 030042          148 -------------DGTIVKT---------------KFLIGCDGIHSTVAW  169 (184)
Q Consensus       148 -------------~g~~~~a---------------~~vI~a~G~~s~~~~  169 (184)
                                   ++.++.|               ++||+|||+.+++.+
T Consensus       194 ~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~  243 (326)
T 2gjc_A          194 TLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGA  243 (326)
T ss_dssp             HHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCS
T ss_pred             eeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHH
Confidence                         3357999               999999999876543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.56  E-value=4.1e-14  Score=102.09  Aligned_cols=114  Identities=18%  Similarity=0.270  Sum_probs=76.1

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |.|+.+||+|||||++|+++|+.|++.|.+|+|+|+. .+++..   .+                    ..   ..    
T Consensus         1 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~---~~--------------------~~---~~----   49 (320)
T 1trb_A            1 GTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQL---TT--------------------TT---EV----   49 (320)
T ss_dssp             CCEEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGG---GG--------------------CS---BC----
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceE---ec--------------------ch---hh----
Confidence            3456789999999999999999999999999999964 222210   00                    00   00    


Q ss_pred             cCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042           81 LGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI  158 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI  158 (184)
                        .      .++     +. ...+.+..+.+++.+.+.  ++++++++ ++++...+   +. +.+ +.++.++.+|+||
T Consensus        50 --~------~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~---~~-~~v-~~~~~~~~~~~lv  109 (320)
T 1trb_A           50 --E------NWP-----GD-PNDLTGPLLMERMHEHATKFETEIIFDH-INKVDLQN---RP-FRL-NGDNGEYTCDALI  109 (320)
T ss_dssp             --C------CST-----TC-CSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSS---SS-EEE-EESSCEEEEEEEE
T ss_pred             --h------hCC-----CC-CCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecC---CE-EEE-EeCCCEEEcCEEE
Confidence              0      000     00 001334555555555442  78888885 88888754   33 677 6778889999999


Q ss_pred             ecCCcch
Q 030042          159 GCDGIHS  165 (184)
Q Consensus       159 ~a~G~~s  165 (184)
                      +|+|..+
T Consensus       110 ~AtG~~~  116 (320)
T 1trb_A          110 IATGASA  116 (320)
T ss_dssp             ECCCEEE
T ss_pred             ECCCCCc
Confidence            9999865

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.56  E-value=3.4e-14  Score=103.13  Aligned_cols=113  Identities=20%  Similarity=0.299  Sum_probs=78.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC----CCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEE
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD----GLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVT   79 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (184)
                      +++||+|||||++|+++|+.|++.|++|+|||+.+    .+++..                   ..     .    .   
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~-------------------~~-----~----~---   69 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQL-------------------TT-----T----T---   69 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGG-------------------GG-----S----S---
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccc-------------------cc-----c----h---
Confidence            46899999999999999999999999999999965    222110                   00     0    0   


Q ss_pred             ecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE---ecCcEEEe
Q 030042           80 NLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL---VDGTIVKT  154 (184)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~---~~g~~~~a  154 (184)
                             ....++     +. ...+...++.+++.+.+.  ++++++++ |+++...+   .. +.+.+   .++.++.+
T Consensus        70 -------~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~---~~-~~v~~~~~~~~~~~~~  131 (338)
T 3itj_A           70 -------EIENFP-----GF-PDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSS---KP-FKLWTEFNEDAEPVTT  131 (338)
T ss_dssp             -------EECCST-----TC-TTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSS---SS-EEEEETTCSSSCCEEE
T ss_pred             -------hhcccC-----CC-cccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcC---CE-EEEEEEecCCCcEEEe
Confidence                   000010     00 113456677776666553  78999988 99998765   44 77777   36678999


Q ss_pred             eEEEecCCcch
Q 030042          155 KFLIGCDGIHS  165 (184)
Q Consensus       155 ~~vI~a~G~~s  165 (184)
                      |.||+|+|..+
T Consensus       132 d~vvlAtG~~~  142 (338)
T 3itj_A          132 DAIILATGASA  142 (338)
T ss_dssp             EEEEECCCEEE
T ss_pred             CEEEECcCCCc
Confidence            99999999864

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.54  E-value=1e-13  Score=100.28  Aligned_cols=113  Identities=23%  Similarity=0.282  Sum_probs=76.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ++||+|||||++|+++|+.|++.|.+|+|+|+. .+++....   .                    ..   +        
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~---~--------------------~~---~--------   52 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW---S--------------------EE---V--------   52 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG---C--------------------SC---B--------
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc---c--------------------cc---c--------
Confidence            589999999999999999999999999999997 33322100   0                    00   0        


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEecc--CCCCCcceEEEEecCcEEEeeEEEec
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQ--THDGSSPVFIHLVDGTIVKTKFLIGC  160 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~--~~~~~~~~~v~~~~g~~~~a~~vI~a  160 (184)
                          ..+.     +.. ..+.+.++.+.+.+.+.  ++++++ ++|+++...  +  ... +.|.+.+|+++.+|+||+|
T Consensus        53 ----~~~~-----~~~-~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~--~~~-~~v~~~~g~~~~~~~vv~A  118 (325)
T 2q7v_A           53 ----ENFP-----GFP-EPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATS--HPY-PFTVRGYNGEYRAKAVILA  118 (325)
T ss_dssp             ----CCST-----TCS-SCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTS--SSC-CEEEEESSCEEEEEEEEEC
T ss_pred             ----ccCC-----CCC-CCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCC--Cce-EEEEECCCCEEEeCEEEEC
Confidence                0000     000 01334566666555443  788877 689998876  3  122 6777788889999999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      +|..+.
T Consensus       119 tG~~~~  124 (325)
T 2q7v_A          119 TGADPR  124 (325)
T ss_dssp             CCEEEC
T ss_pred             cCCCcC
Confidence            998653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.54  E-value=1.2e-13  Score=104.56  Aligned_cols=149  Identities=17%  Similarity=0.208  Sum_probs=81.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC-----CCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEE-
Q 030042            5 EKDVVIIGAGIAGLATALALKRLG-----VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISV-   78 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g-----~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (184)
                      .+||+|||||++|+++|..|++.|     .+|+|||+.+..+.... ..+......    .....++.....+.....+ 
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~-~~~~~~~~~----~~~~~~l~~~~~p~~~~~~~  104 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGN-TLVSQSELQ----ISFLKDLVSLRNPTSPYSFV  104 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGG-GCCSSCBCS----SCTTSSSSTTTCTTCTTSHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCC-CCCCCCcCC----cchhhccccccCCCCCCChh
Confidence            479999999999999999999999     99999999886642210 000000000    0000000000000000000 


Q ss_pred             --EecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCc-ceEEEEecCc---
Q 030042           79 --TNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSS-PVFIHLVDGT---  150 (184)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~-~~~v~~~~g~---  150 (184)
                        ......   ...+..     .......+.++.+++...+.  ++.++++++|++++..++.+.. .+.|.+.+|.   
T Consensus       105 ~~l~~~~~---~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~  176 (463)
T 3s5w_A          105 NYLHKHDR---LVDFIN-----LGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEE  176 (463)
T ss_dssp             HHHHHTTC---HHHHHH-----HCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCE
T ss_pred             HhhhhcCc---eeeccc-----ccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCce
Confidence              000000   000000     01123346667776665543  6789999999999876211122 1367777765   


Q ss_pred             -EEEeeEEEecCCcchH
Q 030042          151 -IVKTKFLIGCDGIHST  166 (184)
Q Consensus       151 -~~~a~~vI~a~G~~s~  166 (184)
                       ++.+|.||+|+|....
T Consensus       177 ~~~~~d~lVlAtG~~p~  193 (463)
T 3s5w_A          177 LVRTTRALVVSPGGTPR  193 (463)
T ss_dssp             EEEEESEEEECCCCEEC
T ss_pred             EEEEeCEEEECCCCCCC
Confidence             8999999999998543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.54  E-value=8.1e-14  Score=100.58  Aligned_cols=110  Identities=26%  Similarity=0.326  Sum_probs=73.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ++||+|||||++|+++|+.|++.|.+|+|+|+. ..++...   ..                    ...           
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~---~~--------------------~~~-----------   60 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGLTA---EA--------------------PLV-----------   60 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTGGGG---GC--------------------SCB-----------
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-CCCcccc---cc--------------------chh-----------
Confidence            589999999999999999999999999999994 3322110   00                    000           


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                          ..++.     .  ..+...++.+.+.+.+.  ++++++ .+|+++...+   +. +.|.+ ++.++.+|+||+|+|
T Consensus        61 ----~~~~~-----~--~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~---~~-~~v~~-~~~~~~~~~li~AtG  123 (319)
T 3cty_A           61 ----ENYLG-----F--KSIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQ---GG-FDIET-NDDTYHAKYVIITTG  123 (319)
T ss_dssp             ----CCBTT-----B--SSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEET---TE-EEEEE-SSSEEEEEEEEECCC
T ss_pred             ----hhcCC-----C--cccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeC---CE-EEEEE-CCCEEEeCEEEECCC
Confidence                00000     0  01234455555555442  677777 6899988764   33 66766 556899999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ..+.
T Consensus       124 ~~~~  127 (319)
T 3cty_A          124 TTHK  127 (319)
T ss_dssp             EEEC
T ss_pred             CCcc
Confidence            8653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.53  E-value=4e-14  Score=107.22  Aligned_cols=146  Identities=16%  Similarity=0.200  Sum_probs=84.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHh---CCCC---eEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEE
Q 030042            6 KDVVIIGAGIAGLATALALKR---LGVE---PLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVT   79 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~---~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (184)
                      +||+|||||++|+++|..|++   .|.+   |+|||+.+..++...-.....  .   ...++.    ........+.. 
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g--~---~~~g~~----~~~~~y~~l~~-   72 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTG--L---DENGEP----VHSSMYRYLWS-   72 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCS--B---CTTSSB----CCCCCCTTCBC-
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCC--c---cccCCC----CcCccccchhh-
Confidence            699999999999999999999   9999   999999877654321100000  0   000000    00000000000 


Q ss_pred             ecCCCceeeeecCCCCC---C-CCCCeeeeHHHHHHHHHhhCC--CCe--eeeCceEEEEeccCCCCCcceEEEEec---
Q 030042           80 NLGTGATQETSLTGKFG---D-GSGPRFIHRKKLLQTLADELP--NGT--IHFSSKIAAIDSQTHDGSSPVFIHLVD---  148 (184)
Q Consensus        80 ~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~l~~~~~--~~~--i~~~~~v~~~~~~~~~~~~~~~v~~~~---  148 (184)
                         ........+.+...   . .......++..+.+++.+.+.  +++  ++++++|+++...++ ... |.|.+.+   
T Consensus        73 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~-~~~-~~V~~~~~~~  147 (464)
T 2xve_A           73 ---NGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNED-SQT-FTVTVQDHTT  147 (464)
T ss_dssp             ---SSCGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETT-TTE-EEEEEEETTT
T ss_pred             ---cCChhhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCC-CCc-EEEEEEEcCC
Confidence               00000000111000   0 001224567788877777654  666  889999999988652 123 7787765   


Q ss_pred             C--cEEEeeEEEecCCcchH
Q 030042          149 G--TIVKTKFLIGCDGIHST  166 (184)
Q Consensus       149 g--~~~~a~~vI~a~G~~s~  166 (184)
                      |  .++.+|.||+|+|.++.
T Consensus       148 g~~~~~~~d~VVvAtG~~s~  167 (464)
T 2xve_A          148 DTIYSEEFDYVVCCTGHFST  167 (464)
T ss_dssp             TEEEEEEESEEEECCCSSSS
T ss_pred             CceEEEEcCEEEECCCCCCC
Confidence            4  57899999999997654

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.53  E-value=8.8e-14  Score=107.84  Aligned_cols=154  Identities=20%  Similarity=0.238  Sum_probs=85.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc----ceeee-----------cccHHHHHHHc---C-----
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG----AAISF-----------APNAWLALDAL---G-----   61 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~----~~~~~-----------~~~~~~~~~~~---~-----   61 (184)
                      .+||+|||+|++|+++|+.|++.|.+|+|+|+.+..++..    .+...           ......+++.+   +     
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            5799999999999999999999999999999988765432    11110           01111111110   1     


Q ss_pred             -------------ChHHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCc
Q 030042           62 -------------VSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSS  126 (184)
Q Consensus        62 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~  126 (184)
                                   ..+.+.....++..+.  .............       .........+.+.|.+.+.  ++++++++
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~--~~gg~~~~r~~~~-------~~~~~~g~~l~~~L~~~~~~~gv~i~~~t  276 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDVG--RMGGASVNRSHRP-------TGGAGVGAHVAQVLWDNAVKRGTDIRLNS  276 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEEE--CCTTCSSCCEEES-------TTTCCHHHHHHHHHHHHHHHTTCEEESSE
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCcccccc--ccCCCcCCeeEec-------CCCCCCHHHHHHHHHHHHHHcCCeEEecC
Confidence                         0111122222221110  0000000000000       0001234566666666653  89999999


Q ss_pred             eEEEEeccCCCCCcceEEEEe--cCc--EEEeeEEEecCCcchHHHh
Q 030042          127 KIAAIDSQTHDGSSPVFIHLV--DGT--IVKTKFLIGCDGIHSTVAW  169 (184)
Q Consensus       127 ~v~~~~~~~~~~~~~~~v~~~--~g~--~~~a~~vI~a~G~~s~~~~  169 (184)
                      +|+++..+++ +.. +.|...  +|+  ++.||.||+|+|.++..++
T Consensus       277 ~v~~l~~~~~-g~v-~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~~~  321 (572)
T 1d4d_A          277 RVVRILEDAS-GKV-TGVLVKGEYTGYYVIKADAVVIAAGGFAKNNE  321 (572)
T ss_dssp             EEEEEEEC---CCE-EEEEEEETTTEEEEEECSEEEECCCCCTTCHH
T ss_pred             EEEEEEECCC-CeE-EEEEEEeCCCcEEEEEcCEEEEeCCCCccCHH
Confidence            9999976531 232 334443  664  6899999999999885433

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.53  E-value=6.9e-14  Score=108.89  Aligned_cols=163  Identities=17%  Similarity=0.133  Sum_probs=89.3

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCcc----ceee--ecc-cHH-----HHHHHcC-C---
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTG----AAIS--FAP-NAW-----LALDALG-V---   62 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~----~~~~--~~~-~~~-----~~~~~~~-~---   62 (184)
                      |...++||+|||||++|+++|+.|++.|  .+|+|+||.....+.+    .++.  +.+ ..+     ..+.... +   
T Consensus         1 m~~~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~   80 (602)
T 1kf6_A            1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQ   80 (602)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCcccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCH
Confidence            5556799999999999999999999999  9999999976443211    1111  111 111     1111100 0   


Q ss_pred             -------------hHHHHhcCCCccceEEEecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--C-CeeeeC
Q 030042           63 -------------SHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--N-GTIHFS  125 (184)
Q Consensus        63 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~-~~i~~~  125 (184)
                                   .+++...+.++..     ...+......+.+...... ...-.....+...|.+.+.  + ++++++
T Consensus        81 ~~v~~~~~~~~~~i~~L~~~Gv~f~~-----~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~  155 (602)
T 1kf6_A           81 DVVDYFVHHCPTEMTQLELWGCPWSR-----RPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDE  155 (602)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCB-----CTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCccc-----CCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeC
Confidence                         0112222222211     0111000001111000000 0000113467777777653  5 899999


Q ss_pred             ceEEEEeccCCCCCcceEEE---EecCc--EEEeeEEEecCCcchHHHhhh
Q 030042          126 SKIAAIDSQTHDGSSPVFIH---LVDGT--IVKTKFLIGCDGIHSTVAWWL  171 (184)
Q Consensus       126 ~~v~~~~~~~~~~~~~~~v~---~~~g~--~~~a~~vI~a~G~~s~~~~~~  171 (184)
                      ++|+++..++  +.. ..|.   +.+|+  .+.|+.||+|||.++.+....
T Consensus       156 ~~v~~l~~~~--g~v-~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~~  203 (602)
T 1kf6_A          156 HFVLDILVDD--GHV-RGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYN  203 (602)
T ss_dssp             EEEEEEEEET--TEE-EEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSB
T ss_pred             CEEEEEEEeC--CEE-EEEEEEEcCCCcEEEEEcCeEEECCCCCcccccCc
Confidence            9999998765  222 2332   25675  789999999999999875433

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.53  E-value=1.9e-13  Score=106.15  Aligned_cols=37  Identities=38%  Similarity=0.420  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      .++||+|||||++|+++|+.|++.|.+|+|+||.+..
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~   42 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            3689999999999999999999999999999998654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.51  E-value=1.3e-13  Score=105.76  Aligned_cols=115  Identities=21%  Similarity=0.260  Sum_probs=79.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.  .++...            .          . .   .+       
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~--~GG~~~------------~----------~-~---~~-------  255 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER--FGGQVL------------D----------T-V---DI-------  255 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS--TTGGGT------------T----------C-S---CB-------
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC--CCCccc------------c----------c-c---cc-------
Confidence            4689999999999999999999999999999863  221100            0          0 0   00       


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                           ..+.       ........++.+.+.+.+.  +++++.+++|+++....+.+.. +.|.+.+|+++.+|.||+|+
T Consensus       256 -----~~~~-------~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~-~~V~~~~g~~~~~d~vVlAt  322 (521)
T 1hyu_A          256 -----ENYI-------SVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGL-HQIETASGAVLKARSIIIAT  322 (521)
T ss_dssp             -----CCBT-------TBSSBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSC-EEEEETTSCEEEEEEEEECC
T ss_pred             -----cccC-------CCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCce-EEEEECCCCEEEcCEEEECC
Confidence                 0000       0001334566666655543  7899999999999764311223 88888899899999999999


Q ss_pred             CcchH
Q 030042          162 GIHST  166 (184)
Q Consensus       162 G~~s~  166 (184)
                      |+.+.
T Consensus       323 G~~~~  327 (521)
T 1hyu_A          323 GAKWR  327 (521)
T ss_dssp             CEEEC
T ss_pred             CCCcC
Confidence            98653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.51  E-value=1.7e-13  Score=99.64  Aligned_cols=112  Identities=20%  Similarity=0.306  Sum_probs=75.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      +++||+|||||++|+++|+.|++.|.+|+|+|+. .+++..   .+.                    ..           
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~---~~~--------------------~~-----------   57 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGAL---MTT--------------------TD-----------   57 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGG---GSC--------------------SC-----------
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCce---ecc--------------------ch-----------
Confidence            4689999999999999999999999999999975 222210   000                    00           


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEE-EEecCcEEEeeEEEec
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFI-HLVDGTIVKTKFLIGC  160 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v-~~~~g~~~~a~~vI~a  160 (184)
                          ...++     +. ...+.+.++.+++.+.+.  ++++++++ ++++.. +   +. +.| .+.+++++.+|.||+|
T Consensus        58 ----~~~~~-----~~-~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~---~~-~~v~~~~~g~~~~~d~lviA  121 (335)
T 2a87_A           58 ----VENYP-----GF-RNGITGPELMDEMREQALRFGADLRMED-VESVSL-H---GP-LKSVVTADGQTHRARAVILA  121 (335)
T ss_dssp             ----BCCST-----TC-TTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-S---SS-SEEEEETTSCEEEEEEEEEC
T ss_pred             ----hhhcC-----CC-CCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-C---Cc-EEEEEeCCCCEEEeCEEEEC
Confidence                00000     00 001334556665555442  78888886 888887 3   23 667 7778888999999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      +|..+.
T Consensus       122 tG~~~~  127 (335)
T 2a87_A          122 MGAAAR  127 (335)
T ss_dssp             CCEEEC
T ss_pred             CCCCcc
Confidence            998653

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.50  E-value=3.9e-13  Score=102.67  Aligned_cols=62  Identities=16%  Similarity=0.249  Sum_probs=41.2

Q ss_pred             HHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHHhhhC
Q 030042          108 KLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLG  172 (184)
Q Consensus       108 ~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~~  172 (184)
                      .+.+.|.+.++  |++|+++++|++|...+  +.. ..|.+.+|+++.||.||.+++.....++.++
T Consensus       222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~--~~~-~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~  285 (501)
T 4dgk_A          222 ALVQGMIKLFQDLGGEVVLNARVSHMETTG--NKI-EAVHLEDGRRFLTQAVASNADVVHTYRDLLS  285 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEE-EEEEETTSCEEECSCEEECCC----------
T ss_pred             chHHHHHHHHHHhCCceeeecceeEEEeeC--CeE-EEEEecCCcEEEcCEEEECCCHHHHHHHhcc
Confidence            34455555443  88999999999999876  233 6689999999999999999988766555543

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.49  E-value=3.2e-13  Score=105.25  Aligned_cols=156  Identities=21%  Similarity=0.231  Sum_probs=86.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc----ceee--ec---ccHHH-H----HHHc-CC------
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG----AAIS--FA---PNAWL-A----LDAL-GV------   62 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~----~~~~--~~---~~~~~-~----~~~~-~~------   62 (184)
                      .++||+|||||++|+++|+.|++.|.+|+|+||....++.+    .++.  +.   ...++ .    ++.- ++      
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v   96 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAI   96 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            35899999999999999999999999999999976543221    1111  11   11111 1    1110 01      


Q ss_pred             ----------hHHHHhcCCCccceEEEecCCCceeeeecCCCCCC-C---CCCee-----eeHHHHHHHHHhhCC--CCe
Q 030042           63 ----------SHKLASIYPPVNRISVTNLGTGATQETSLTGKFGD-G---SGPRF-----IHRKKLLQTLADELP--NGT  121 (184)
Q Consensus        63 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-----~~~~~l~~~l~~~~~--~~~  121 (184)
                                .+++...+.++..     ...+......+...... +   .....     .....+...|.+.+.  +++
T Consensus        97 ~~l~~~s~~~i~~L~~~Gv~f~~-----~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~  171 (621)
T 2h88_A           97 HYMTEQAPAAVIELENYGMPFSR-----TEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTS  171 (621)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCB-----CTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCE
T ss_pred             HHHHHHHHHHHHHHHHcCCCccc-----CCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCCE
Confidence                      1122222322211     11111111111111000 0   00000     123467777777654  899


Q ss_pred             eeeCceEEEEeccCCCCCcceEEEE---ecCc--EEEeeEEEecCCcchHH
Q 030042          122 IHFSSKIAAIDSQTHDGSSPVFIHL---VDGT--IVKTKFLIGCDGIHSTV  167 (184)
Q Consensus       122 i~~~~~v~~~~~~~~~~~~~~~v~~---~~g~--~~~a~~vI~a~G~~s~~  167 (184)
                      ++.++.|+++..++  +.. ..|..   .+|+  .+.|+.||+|||+++.+
T Consensus       172 i~~~~~v~~Li~~~--g~v-~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          172 YFVEYFALDLLMEN--GEC-RGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             EEETEEEEEEEEET--TEE-EEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             EEEceEEEEEEEEC--CEE-EEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            99999999998754  232 33433   4564  68999999999998864

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.49  E-value=1.4e-13  Score=105.92  Aligned_cols=37  Identities=41%  Similarity=0.494  Sum_probs=34.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      .++||+|||||++|+++|+.|++ |.+|+|+||.+..+
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~   43 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTE   43 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCC
Confidence            46899999999999999999999 99999999987654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.48  E-value=8.7e-13  Score=103.51  Aligned_cols=40  Identities=33%  Similarity=0.467  Sum_probs=36.3

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      |.+.++||+|||||++|+++|+.|++.|.+|+|+||....
T Consensus         1 M~~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             CCcccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            6556799999999999999999999999999999997654

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.47  E-value=7.3e-13  Score=101.62  Aligned_cols=57  Identities=18%  Similarity=0.330  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042          106 RKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus       106 ~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                      ...+.+.|.+.+++.+|+++++|++|...+  ++. +.|.+.+|+++.||.||.|.+...
T Consensus       201 ~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~--~~~-v~v~~~~g~~~~ad~VI~t~p~~~  257 (516)
T 1rsg_A          201 YDSVVQRIAQSFPQNWLKLSCEVKSITREP--SKN-VTVNCEDGTVYNADYVIITVPQSV  257 (516)
T ss_dssp             HHHHHHHHHTTSCGGGEETTCCEEEEEECT--TSC-EEEEETTSCEEEEEEEEECCCHHH
T ss_pred             HHHHHHHHHHhCCCCEEEECCEEEEEEEcC--CCe-EEEEECCCcEEECCEEEECCCHHH
Confidence            455666676666556799999999999763  244 889999998899999999997543

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.46  E-value=7.7e-13  Score=100.42  Aligned_cols=64  Identities=33%  Similarity=0.430  Sum_probs=49.2

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCccce---------------eeecccHHHHHHHcCChHH
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTGAA---------------ISFAPNAWLALDALGVSHK   65 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~   65 (184)
                      |.++||+|||||++|+++|+.|++.|  .+|+|+|+.+..++...+               ....+...++++++|+...
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~~~~   81 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGLGEK   81 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTCGGG
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCCcce
Confidence            34689999999999999999999999  999999998776553211               1123456788888887755


Q ss_pred             H
Q 030042           66 L   66 (184)
Q Consensus        66 ~   66 (184)
                      +
T Consensus        82 ~   82 (475)
T 3lov_A           82 L   82 (475)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.45  E-value=1e-12  Score=98.32  Aligned_cols=39  Identities=36%  Similarity=0.450  Sum_probs=35.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      +||+|||||++|+++|+.|+++|.+|+|+|+.+.+++..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~   39 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRF   39 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCce
Confidence            489999999999999999999999999999998876554

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.45  E-value=1.7e-12  Score=98.56  Aligned_cols=63  Identities=29%  Similarity=0.485  Sum_probs=48.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceee-------------e--cccHHHHHHHcCChHHH
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS-------------F--APNAWLALDALGVSHKL   66 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~   66 (184)
                      ..+||+|||||++|+++|+.|++.|.+|+|+|+.+..++......             .  .+...++++++|+...+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~~~   92 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRI   92 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGGE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCCccee
Confidence            357999999999999999999999999999999988775433221             1  24567788888876443

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.45  E-value=3.4e-13  Score=102.25  Aligned_cols=42  Identities=36%  Similarity=0.516  Sum_probs=36.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      |+ ++|||+|||||++|+++|..|++.|.+|+|||+.+..++.
T Consensus         1 M~-~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~   42 (466)
T 3l8k_A            1 MS-LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGN   42 (466)
T ss_dssp             -C-EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHH
T ss_pred             CC-ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCc
Confidence            65 3699999999999999999999999999999988776654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.44  E-value=5.5e-12  Score=96.82  Aligned_cols=42  Identities=40%  Similarity=0.654  Sum_probs=36.6

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      |+ .++||+|||||++||++|+.|++.|.+|+|+|+.+.+++.
T Consensus         1 m~-~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr   42 (520)
T 1s3e_A            1 MS-NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR   42 (520)
T ss_dssp             ---CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTT
T ss_pred             CC-CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            55 4679999999999999999999999999999998887654

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.44  E-value=3.4e-12  Score=95.69  Aligned_cols=38  Identities=34%  Similarity=0.613  Sum_probs=35.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      +||+|||||++|+++|+.|++.|.+|+|+|+++..++.
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~   39 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGR   39 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTT
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCe
Confidence            79999999999999999999999999999998776654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.44  E-value=4.5e-13  Score=102.03  Aligned_cols=44  Identities=11%  Similarity=0.211  Sum_probs=37.9

Q ss_pred             CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      |++++.+++|+++...+   +. +.|.+.+|+++.+|.||.|+|..+.
T Consensus       246 Gv~i~~~~~V~~i~~~~---~~-v~v~~~~g~~i~aD~Vi~A~G~~p~  289 (484)
T 3o0h_A          246 GISIIYEATVSQVQSTE---NC-YNVVLTNGQTICADRVMLATGRVPN  289 (484)
T ss_dssp             TCEEESSCCEEEEEECS---SS-EEEEETTSCEEEESEEEECCCEEEC
T ss_pred             CCEEEeCCEEEEEEeeC---CE-EEEEECCCcEEEcCEEEEeeCCCcC
Confidence            89999999999998765   44 7888889989999999999998653

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.43  E-value=2.4e-14  Score=107.51  Aligned_cols=141  Identities=17%  Similarity=0.131  Sum_probs=80.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC-cc---ceeeecccHHHHHHHcCC--hHHHHhcCCCccceE
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG-TG---AAISFAPNAWLALDALGV--SHKLASIYPPVNRIS   77 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~-~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   77 (184)
                      +++||+|||||++|+++|+.|++.|++|+|+|+.+.... .+   ........+...++.+|+  |....   .....+.
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~~~---~~~~~~~   97 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNEWPSEE---FGYFGHY   97 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHTTCCCSCHHH---HCEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhcChhhhhhhc---cccccee
Confidence            347999999999999999999999999999999763211 11   112233445556666643  32211   1233333


Q ss_pred             EEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCc-eEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042           78 VTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSS-KIAAIDSQTHDGSSPVFIHLVDGTIVKT  154 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~-~v~~~~~~~~~~~~~~~v~~~~g~~~~a  154 (184)
                      .......   ...|...  .......+++..+...|.+.+.  ++++++.. .+.++...                ...+
T Consensus        98 ~~~~~~~---~~~~~~~--~~~~~~~v~~~~l~~~L~~~~~~~Gv~v~~~~v~~~~l~~~----------------~~~a  156 (430)
T 3ihm_A           98 YYVGGPQ---PMRFYGD--LKAPSRAVDYRLYQPMLMRALEARGGKFCYDAVSAEDLEGL----------------SEQY  156 (430)
T ss_dssp             EEECSSS---CEEEEEE--EEEEEBEECHHHHHHHHHHHHHHTTCEEEECCCCGGGHHHH----------------HTTS
T ss_pred             EEECCCC---ccccchh--cCCcceeecHHHHHHHHHHHHHHcCCEEEEEecchhhhhhh----------------cccC
Confidence            3332221   1111110  0112246677777777777763  67766522 11111110                1247


Q ss_pred             eEEEecCCcchHHH
Q 030042          155 KFLIGCDGIHSTVA  168 (184)
Q Consensus       155 ~~vI~a~G~~s~~~  168 (184)
                      |.||+|+|.+|.++
T Consensus       157 d~VV~AdG~~S~~~  170 (430)
T 3ihm_A          157 DLLVVCTGKYALGK  170 (430)
T ss_dssp             SEEEECCCCTTGGG
T ss_pred             CEEEECCCCcchHH
Confidence            99999999998765

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.43  E-value=9.5e-13  Score=99.93  Aligned_cols=40  Identities=35%  Similarity=0.562  Sum_probs=36.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCCCCCcc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSDGLRGTG   44 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~~~~~~   44 (184)
                      ++||+|||||++||++|+.|+++|.  +|+|+|+.+..++..
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~   43 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWI   43 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTC
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCce
Confidence            3699999999999999999999999  999999988776543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.42  E-value=2.8e-13  Score=102.64  Aligned_cols=143  Identities=16%  Similarity=0.130  Sum_probs=76.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .++||+|||||++|+++|..|++.|.+|+|+|+. ..++........ ....++...++++.+...... ..+.  .  .
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~-psk~ll~~~~~~~~~~~~~~~-~g~~--~--~   74 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCI-PSKALLRNAELVHIFTKDAKA-FGIS--G--E   74 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHH-HHHHHHHHHHHHHHHHHHTTT-TTEE--E--C
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCch-hhHHHHHHHHHHHHHHHHHHh-cCCC--C--C
Confidence            3689999999999999999999999999999997 333221111111 122233333333333211111 1111  0  0


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC--CCCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEe
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL--PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIG  159 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~  159 (184)
                         ...++....    .........+.+.+.+.+  .+++++.++.+. +  +.   .. +.|.+.+|  +++.+|.||+
T Consensus        75 ---~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-i--d~---~~-v~V~~~~G~~~~~~~d~lVi  140 (464)
T 2a8x_A           75 ---VTFDYGIAY----DRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-A--DA---NT-LLVDLNDGGTESVTFDNAII  140 (464)
T ss_dssp             ---CEECHHHHH----HHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-S--SS---SE-EEEEETTSCCEEEEEEEEEE
T ss_pred             ---CccCHHHHH----HHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--cC---Ce-EEEEeCCCceEEEEcCEEEE
Confidence               011110000    000000012222222222  278888887653 2  22   33 77888777  6899999999


Q ss_pred             cCCcchHH
Q 030042          160 CDGIHSTV  167 (184)
Q Consensus       160 a~G~~s~~  167 (184)
                      |||+.+..
T Consensus       141 AtG~~~~~  148 (464)
T 2a8x_A          141 ATGSSTRL  148 (464)
T ss_dssp             CCCEEECC
T ss_pred             CCCCCCCC
Confidence            99987643

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.42  E-value=6.4e-13  Score=99.42  Aligned_cols=38  Identities=42%  Similarity=0.567  Sum_probs=35.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      ||+|||||++|+++|+.|+++|.+|+|+|+.+.+++..
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~   39 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRF   39 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcee
Confidence            89999999999999999999999999999998876654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.42  E-value=9.2e-13  Score=100.78  Aligned_cols=52  Identities=19%  Similarity=0.315  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042          107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus       107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~  164 (184)
                      ..+.+.|.+.++  +++++++++|+++..++      ..+.+.+|+++.||.||.+.-..
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~------~~v~~~~G~~~~ad~vI~t~P~~  275 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANN------KTVTLQDGTTIGYKKLVSTMAVD  275 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEETTT------TEEEETTSCEEEEEEEEECSCHH
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEccC------CEEEEcCCCEEECCEEEECCCHH
Confidence            457777877775  78999999999998765      34668899999999999877543

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.41  E-value=1.3e-12  Score=99.13  Aligned_cols=31  Identities=42%  Similarity=0.707  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ||+|||||++|+++|+.|++.|.+|+|+||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            8999999999999999999999999999998

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.41  E-value=4.3e-13  Score=102.10  Aligned_cols=39  Identities=33%  Similarity=0.563  Sum_probs=35.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++||+|||||++|+++|+.|++.|.+|+|||+.+..++.
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~   44 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV   44 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Confidence            689999999999999999999999999999997766543

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.40  E-value=4.6e-13  Score=101.05  Aligned_cols=106  Identities=24%  Similarity=0.340  Sum_probs=69.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      +++||+|||||++|+++|+.|++.  +.+|+|||+.+..+....+..               .              .. 
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p---------------~--------------~~-   51 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIP---------------Y--------------VV-   51 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC----------------------------------------
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCc---------------c--------------cc-
Confidence            357999999999999999999988  789999999875422110000               0              00 


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHH----HHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeE
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLL----QTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKF  156 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~  156 (184)
                       ..   .               .....+.    +.+.+.. +++++++++|+++....      +.+.+.++ .++.+|.
T Consensus        52 -~~---~---------------~~~~~~~~~~~~~~~~~~-gi~v~~~~~v~~i~~~~------~~v~~~~g~~~~~~d~  105 (449)
T 3kd9_A           52 -EG---L---------------STPDKLMYYPPEVFIKKR-GIDLHLNAEVIEVDTGY------VRVRENGGEKSYEWDY  105 (449)
T ss_dssp             ---------------------------------CTHHHHT-TCEEETTCEEEEECSSE------EEEECSSSEEEEECSE
T ss_pred             -CC---C---------------CCHHHhhhcCHHHHHHhc-CcEEEecCEEEEEecCC------CEEEECCceEEEEcCE
Confidence             00   0               0000111    1222222 78999999999987654      67777777 4899999


Q ss_pred             EEecCCcch
Q 030042          157 LIGCDGIHS  165 (184)
Q Consensus       157 vI~a~G~~s  165 (184)
                      ||+|||...
T Consensus       106 lviAtG~~p  114 (449)
T 3kd9_A          106 LVFANGASP  114 (449)
T ss_dssp             EEECCCEEE
T ss_pred             EEECCCCCC
Confidence            999999754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.40  E-value=5e-13  Score=101.60  Aligned_cols=144  Identities=22%  Similarity=0.236  Sum_probs=77.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .++||+|||||++|+++|+.|++.|.+|+|+|+.+..++........| +..++...+.++.+.... ...++...  ..
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p-sk~l~~~~~~~~~~~~~~-~~~gi~~~--~~   79 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIP-SKALLNNSHLFHQMHTEA-QKRGIDVN--GD   79 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHH-HHHHHHHHHHHHHHHHTS-GGGTEEEC--SC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHH-HHHHHHHHHHHHHHHHHH-HhcCcccC--CC
Confidence            468999999999999999999999999999999766654321111111 222233222233332111 11122110  00


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC--CCCeeeeCceEEEEeccCCCCCcceEEEEecC--cE------EE
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL--PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TI------VK  153 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~------~~  153 (184)
                         ...++....    .........+...+.+.+  .+++++.++.+..   +.   .. +.|.+.+|  ++      +.
T Consensus        80 ---~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~---~~---~~-v~V~~~~G~~~~~~~~~~i~  145 (478)
T 1v59_A           80 ---IKINVANFQ----KAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE---DE---TK-IRVTPVDGLEGTVKEDHILD  145 (478)
T ss_dssp             ---EEECHHHHH----HHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES---SS---SE-EEEECCTTCTTCCSSCEEEE
T ss_pred             ---CccCHHHHH----HHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc---cC---Ce-EEEEecCCCcccccccceEE
Confidence               001100000    000000011111122222  2789998887652   22   33 77877776  56      99


Q ss_pred             eeEEEecCCcch
Q 030042          154 TKFLIGCDGIHS  165 (184)
Q Consensus       154 a~~vI~a~G~~s  165 (184)
                      +|.||+|||+.+
T Consensus       146 ~d~lViAtGs~p  157 (478)
T 1v59_A          146 VKNIIVATGSEV  157 (478)
T ss_dssp             EEEEEECCCEEE
T ss_pred             eCEEEECcCCCC
Confidence            999999999876

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.40  E-value=2.9e-12  Score=92.04  Aligned_cols=113  Identities=21%  Similarity=0.231  Sum_probs=74.1

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEE-EeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLV-LEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~v-ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      ..++||+|||||++|+++|+.|++.|.+|+| +|+ +.+++.....                       .          
T Consensus         2 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~-----------------------~----------   47 (315)
T 3r9u_A            2 NAMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSS-----------------------S----------   47 (315)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGC-----------------------S----------
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeee-----------------------c----------
Confidence            4568999999999999999999999999999 999 4433221000                       0          


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEE-EEecCcEEEeeEEE
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFI-HLVDGTIVKTKFLI  158 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v-~~~~g~~~~a~~vI  158 (184)
                           ....++.      ........++..++.+.+.  +++++++ +|+++ ..++ ... +.+ ...++ ++.+|.||
T Consensus        48 -----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~-~~~-~~v~~~~~~-~~~~d~lv  111 (315)
T 3r9u_A           48 -----EIENYPG------VAQVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNS-DGS-FTIKLEGGK-TELAKAVI  111 (315)
T ss_dssp             -----CBCCSTT------CCSCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECT-TSC-EEEEETTSC-EEEEEEEE
T ss_pred             -----eeccCCC------CCCCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCC-CCc-EEEEEecCC-EEEeCEEE
Confidence                 0000000      0012345677777776654  7888887 88888 4431 022 664 22333 89999999


Q ss_pred             ecCCcch
Q 030042          159 GCDGIHS  165 (184)
Q Consensus       159 ~a~G~~s  165 (184)
                      +|+|...
T Consensus       112 lAtG~~~  118 (315)
T 3r9u_A          112 VCTGSAP  118 (315)
T ss_dssp             ECCCEEE
T ss_pred             EeeCCCC
Confidence            9999743

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.40  E-value=1.1e-11  Score=94.53  Aligned_cols=58  Identities=26%  Similarity=0.488  Sum_probs=45.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceee---------------ecccHHHHHHHcCCh
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS---------------FAPNAWLALDALGVS   63 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~   63 (184)
                      +||+|||||++|+++|+.|++.|.+|+|+|+.+.+++......               ..+...+.++++|+.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~  112 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMH  112 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHTTCT
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHcCCc
Confidence            7999999999999999999999999999999988875432211               134566667777764

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.36  E-value=8.4e-13  Score=96.95  Aligned_cols=36  Identities=36%  Similarity=0.599  Sum_probs=33.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .++||+|||||++|+++|+.|+++|.+|+|+|+...
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            468999999999999999999999999999999753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.36  E-value=5.8e-13  Score=101.06  Aligned_cols=40  Identities=43%  Similarity=0.645  Sum_probs=36.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .++||+|||||++|+++|..|++.|.+|+|+|+.+..++.
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~   44 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT   44 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccc
Confidence            4689999999999999999999999999999998776654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.36  E-value=2.8e-12  Score=95.85  Aligned_cols=110  Identities=25%  Similarity=0.321  Sum_probs=72.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCC--eEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVE--PLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~--v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      +++||+|||||++|+++|..|+++|.+  |+|+|+.+......                   ..+.....          
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~-------------------~~l~~~~~----------   58 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYER-------------------PPLSKEYL----------   58 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCS-------------------GGGGTTTT----------
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCc-------------------ccCCHHHH----------
Confidence            468999999999999999999999987  99999976431110                   00000000          


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                       ...           ..........   .+++.+.  +++++.+++|+.+....      ..|.+.+|+.+.+|.+|+||
T Consensus        59 -~~~-----------~~~~~~~~~~---~~~~~~~--~i~~~~~~~v~~id~~~------~~v~~~~g~~~~~d~lvlAt  115 (415)
T 3lxd_A           59 -ARE-----------KTFERICIRP---AQFWEDK--AVEMKLGAEVVSLDPAA------HTVKLGDGSAIEYGKLIWAT  115 (415)
T ss_dssp             -TTS-----------SCSGGGBSSC---HHHHHHT--TEEEEETCCEEEEETTT------TEEEETTSCEEEEEEEEECC
T ss_pred             -cCC-----------CCHHHhccCC---HHHHHHC--CcEEEeCCEEEEEECCC------CEEEECCCCEEEeeEEEEcc
Confidence             000           0000000111   1222222  78999999999998765      56788888899999999999


Q ss_pred             Ccch
Q 030042          162 GIHS  165 (184)
Q Consensus       162 G~~s  165 (184)
                      |...
T Consensus       116 G~~~  119 (415)
T 3lxd_A          116 GGDP  119 (415)
T ss_dssp             CEEC
T ss_pred             CCcc
Confidence            9753

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.35  E-value=2.5e-12  Score=96.61  Aligned_cols=113  Identities=21%  Similarity=0.309  Sum_probs=72.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEE
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISV   78 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (184)
                      |+| .+||+|||||++|+++|..|++.|.  +|+|+|+.+......      +             .+.....       
T Consensus         1 M~~-~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~------~-------------~l~~~~~-------   53 (431)
T 1q1r_A            1 MNA-NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHL------P-------------PLSKAYL-------   53 (431)
T ss_dssp             -CC-SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCS------G-------------GGGTTTT-------
T ss_pred             CCC-CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcC------C-------------CCcHHHh-------
Confidence            553 5899999999999999999999998  799999875421000      0             0000000       


Q ss_pred             EecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042           79 TNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI  158 (184)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI  158 (184)
                         ....            ........   +.+++.+.  +++++++++|+.+...+      ..|.+.+|+++.+|.||
T Consensus        54 ---~~~~------------~~~~~~~~---~~~~~~~~--gv~~~~~~~v~~i~~~~------~~v~~~~g~~~~~d~lv  107 (431)
T 1q1r_A           54 ---AGKA------------TAESLYLR---TPDAYAAQ--NIQLLGGTQVTAINRDR------QQVILSDGRALDYDRLV  107 (431)
T ss_dssp             ---TTCS------------CSGGGBSS---CHHHHHHT--TEEEECSCCEEEEETTT------TEEEETTSCEEECSEEE
T ss_pred             ---CCCC------------ChHHhccc---CHHHHHhC--CCEEEeCCEEEEEECCC------CEEEECCCCEEECCEEE
Confidence               0000            00000000   11223332  78999999999998764      45677788889999999


Q ss_pred             ecCCcchH
Q 030042          159 GCDGIHST  166 (184)
Q Consensus       159 ~a~G~~s~  166 (184)
                      +|||..+.
T Consensus       108 iAtG~~p~  115 (431)
T 1q1r_A          108 LATGGRPR  115 (431)
T ss_dssp             ECCCEEEC
T ss_pred             EcCCCCcc
Confidence            99998654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.34  E-value=1.3e-12  Score=91.92  Aligned_cols=40  Identities=40%  Similarity=0.562  Sum_probs=36.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      ++||+||||||+||++|+.|+++|++|+||||.+.+++..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~   41 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRM   41 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            4899999999999999999999999999999998876543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.34  E-value=3.9e-12  Score=96.48  Aligned_cols=39  Identities=36%  Similarity=0.613  Sum_probs=35.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++||+|||||++|+++|+.|++.|.+|+|||+.+..++.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~   40 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGT   40 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCc
Confidence            589999999999999999999999999999998766544

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.33  E-value=3.3e-12  Score=100.24  Aligned_cols=37  Identities=19%  Similarity=0.347  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC------CCCeEEEeccCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL------GVEPLVLEKSDGL   40 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~------g~~v~vie~~~~~   40 (184)
                      .++||+|||||++|+++|+.|++.      |.+|+|+||....
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~   63 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLE   63 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCC
Confidence            358999999999999999999997      9999999997643

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.32  E-value=1.6e-11  Score=96.41  Aligned_cols=36  Identities=31%  Similarity=0.501  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHH---h-CCCCeEEEeccCCC
Q 030042            5 EKDVVIIGAGIAGLATALALK---R-LGVEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~---~-~g~~v~vie~~~~~   40 (184)
                      ++||+|||||++|+++|+.|+   + .|.+|+|+||....
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            589999999999999999999   6 89999999998743

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.32  E-value=3.3e-12  Score=97.02  Aligned_cols=40  Identities=35%  Similarity=0.690  Sum_probs=36.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      +++||+|||||++|+++|..|++.|.+|+|||+.+..++.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~   44 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGT   44 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCc
Confidence            4689999999999999999999999999999998766544

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.32  E-value=4.4e-12  Score=95.85  Aligned_cols=37  Identities=30%  Similarity=0.591  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      .++||+|||||++|+++|..|++.|.+|+|+|+. ..+
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~g   38 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLG   38 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCC
Confidence            3689999999999999999999999999999997 443

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.31  E-value=5.4e-12  Score=95.38  Aligned_cols=39  Identities=38%  Similarity=0.591  Sum_probs=35.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++||+|||||++|+++|..|++.|.+|+|+|+.+..++.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~   39 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGT   39 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence            379999999999999999999999999999998766544

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.30  E-value=4.9e-13  Score=97.75  Aligned_cols=34  Identities=35%  Similarity=0.450  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC------CCeEEEeccCCC
Q 030042            7 DVVIIGAGIAGLATALALKRLG------VEPLVLEKSDGL   40 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g------~~v~vie~~~~~   40 (184)
                      ||+|||||++|+++|+.|+++|      .+|+|+|+....
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~   41 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTP   41 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGG
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCC
Confidence            9999999999999999999998      899999997643

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.30  E-value=9.1e-13  Score=100.51  Aligned_cols=41  Identities=34%  Similarity=0.596  Sum_probs=35.3

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      |+++||+|||||++|+++|+.|++.|.+|+|||+.+..++.
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~   63 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGT   63 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence            46799999999999999999999999999999998776654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.29  E-value=2.5e-11  Score=92.49  Aligned_cols=40  Identities=35%  Similarity=0.537  Sum_probs=36.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      +.+||+|||||++||++|+.|++.|.+|+|+|+.+.+++.
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~   49 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGR   49 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            4689999999999999999999999999999999877654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.29  E-value=7.9e-12  Score=94.89  Aligned_cols=36  Identities=31%  Similarity=0.424  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~   40 (184)
                      +.||+|||||++|+++|+.|++.  |.+|+|||+.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            46999999999999999999998  8999999998764

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.28  E-value=1.1e-11  Score=94.10  Aligned_cols=40  Identities=30%  Similarity=0.469  Sum_probs=35.3

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      |+ .++||+|||||++|+++|+.|++.|.+|+|||+. ..++
T Consensus         1 M~-~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG   40 (467)
T 1zk7_A            1 ME-PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGG   40 (467)
T ss_dssp             CC-CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTH
T ss_pred             CC-CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCc
Confidence            54 4689999999999999999999999999999987 4443

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.28  E-value=4.6e-11  Score=88.45  Aligned_cols=109  Identities=18%  Similarity=0.172  Sum_probs=72.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      +..+|+|||||++|+++|..|...+.+|+|||+.+.....       ...+         +.+.......          
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~-------~~~l---------~~~l~g~~~~----------   61 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYY-------RPRL---------NEIIAKNKSI----------   61 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBC-------GGGH---------HHHHHSCCCG----------
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcc-------cChh---------hHHHcCCCCH----------
Confidence            4679999999999999999998788999999997754211       0000         0000000000          


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                         .            .. ...   ..+++.+.  +++++++++|+++...+      ..|.+.+|+++.+|.||+|||+
T Consensus        62 ---~------------~l-~~~---~~~~~~~~--~i~~~~~~~V~~id~~~------~~v~~~~g~~~~yd~lvlAtG~  114 (385)
T 3klj_A           62 ---D------------DI-LIK---KNDWYEKN--NIKVITSEFATSIDPNN------KLVTLKSGEKIKYEKLIIASGS  114 (385)
T ss_dssp             ---G------------GT-BSS---CHHHHHHT--TCEEECSCCEEEEETTT------TEEEETTSCEEECSEEEECCCE
T ss_pred             ---H------------Hc-cCC---CHHHHHHC--CCEEEeCCEEEEEECCC------CEEEECCCCEEECCEEEEecCC
Confidence               0            00 000   11222222  88999999999998775      4578888989999999999997


Q ss_pred             ch
Q 030042          164 HS  165 (184)
Q Consensus       164 ~s  165 (184)
                      ..
T Consensus       115 ~p  116 (385)
T 3klj_A          115 IA  116 (385)
T ss_dssp             EE
T ss_pred             Cc
Confidence            43

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.27  E-value=3.1e-11  Score=90.07  Aligned_cols=107  Identities=18%  Similarity=0.198  Sum_probs=70.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      +++||+|||||++|+++|..|++.|.  +|+|+|+.+......     .+....++...          . ...+     
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~-----~~~~~~~~~~~----------~-~~~~-----   64 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDR-----PPLSKDFMAHG----------D-AEKI-----   64 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCS-----GGGGTHHHHHC----------C-GGGS-----
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccC-----CCCCHHHhCCC----------c-hhhh-----
Confidence            35899999999999999999999988  499999976432110     00000111000          0 0000     


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                                           .+.      .+ +. .+++++.+++|+++....      ..|.+.+|+++.+|.||+||
T Consensus        65 ---------------------~~~------~~-~~-~~v~~~~~~~v~~i~~~~------~~v~~~~g~~~~~d~lviAt  109 (408)
T 2gqw_A           65 ---------------------RLD------CK-RA-PEVEWLLGVTAQSFDPQA------HTVALSDGRTLPYGTLVLAT  109 (408)
T ss_dssp             ---------------------BCC------CT-TS-CSCEEEETCCEEEEETTT------TEEEETTSCEEECSEEEECC
T ss_pred             ---------------------hHH------HH-HH-CCCEEEcCCEEEEEECCC------CEEEECCCCEEECCEEEECC
Confidence                                 000      01 11 178899999999998764      56777888899999999999


Q ss_pred             CcchH
Q 030042          162 GIHST  166 (184)
Q Consensus       162 G~~s~  166 (184)
                      |....
T Consensus       110 G~~~~  114 (408)
T 2gqw_A          110 GAAPR  114 (408)
T ss_dssp             CEEEC
T ss_pred             CCCCC
Confidence            98653

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.27  E-value=1.3e-12  Score=99.74  Aligned_cols=64  Identities=8%  Similarity=0.039  Sum_probs=45.9

Q ss_pred             eeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCC----cceEEEEecC-----cEEEeeEEEecCCcchH
Q 030042          103 FIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGS----SPVFIHLVDG-----TIVKTKFLIGCDGIHST  166 (184)
Q Consensus       103 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~----~~~~v~~~~g-----~~~~a~~vI~a~G~~s~  166 (184)
                      ...+.++.++|...+.  +..|+|+++|+++.+.+.++.    ..|.|.+.++     +++.|+.||+|+|....
T Consensus       141 ~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~  215 (501)
T 4b63_A          141 LPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAK  215 (501)
T ss_dssp             CCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEEC
T ss_pred             CCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCC
Confidence            4567777777766554  456999999999987653211    1388888764     36889999999996443

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.27  E-value=1.5e-11  Score=92.87  Aligned_cols=110  Identities=20%  Similarity=0.268  Sum_probs=68.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            6 KDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .||+|||||++|+++|..|++.  |.+|+|||+.+..+....+...       +                      .  .
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~-------~----------------------~--~   51 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSA-------Y----------------------F--N   51 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchh-------h----------------------h--c
Confidence            5999999999999999999998  8899999998765422111000       0                      0  0


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEE-EecCcEEEeeEEEecCC
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIH-LVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~-~~~g~~~~a~~vI~a~G  162 (184)
                      .....  ..       ........    .+.+.  +++++++++|+++...+   .. +.+. ..+++++.+|.+|+|||
T Consensus        52 ~~~~~--~~-------~~~~~~~~----~~~~~--gi~~~~~~~V~~id~~~---~~-v~v~~~~~~~~~~~d~lviAtG  112 (452)
T 3oc4_A           52 HTINE--LH-------EARYITEE----ELRRQ--KIQLLLNREVVAMDVEN---QL-IAWTRKEEQQWYSYDKLILATG  112 (452)
T ss_dssp             ------------------CCCCHH----HHHHT--TEEEECSCEEEEEETTT---TE-EEEEETTEEEEEECSEEEECCC
T ss_pred             CCCCC--HH-------HhhcCCHH----HHHHC--CCEEEECCEEEEEECCC---CE-EEEEecCceEEEEcCEEEECCC
Confidence            00000  00       00000112    22222  78888999999998875   33 5554 22456899999999999


Q ss_pred             cch
Q 030042          163 IHS  165 (184)
Q Consensus       163 ~~s  165 (184)
                      ...
T Consensus       113 ~~p  115 (452)
T 3oc4_A          113 ASQ  115 (452)
T ss_dssp             CCB
T ss_pred             ccc
Confidence            854

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.27  E-value=5.5e-11  Score=89.42  Aligned_cols=111  Identities=23%  Similarity=0.323  Sum_probs=71.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHh---CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceE
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKR---LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRIS   77 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (184)
                      |+. +.||+|||||++|+++|..|++   .|.+|+|||+.+...       +.+. .         ..+.........+ 
T Consensus         1 M~~-m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~-------~~~~-~---------~~~~~g~~~~~~~-   61 (437)
T 3sx6_A            1 MRG-SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ-------FVPS-N---------PWVGVGWKERDDI-   61 (437)
T ss_dssp             CTT-SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE-------CGGG-H---------HHHHHTSSCHHHH-
T ss_pred             CCC-CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc-------ccCC-c---------cccccCccCHHHH-
Confidence            553 4799999999999999999999   799999999976321       1110 0         0000000000000 


Q ss_pred             EEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEE
Q 030042           78 VTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFL  157 (184)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~v  157 (184)
                                               ...   +.+.+.+.  +++++ ..+|+++...+      ..|.+.+|+++.+|+|
T Consensus        62 -------------------------~~~---l~~~~~~~--gv~~~-~~~v~~id~~~------~~V~~~~g~~i~~d~l  104 (437)
T 3sx6_A           62 -------------------------AFP---IRHYVERK--GIHFI-AQSAEQIDAEA------QNITLADGNTVHYDYL  104 (437)
T ss_dssp             -------------------------EEE---CHHHHHTT--TCEEE-CSCEEEEETTT------TEEEETTSCEEECSEE
T ss_pred             -------------------------HHH---HHHHHHHC--CCEEE-EeEEEEEEcCC------CEEEECCCCEEECCEE
Confidence                                     000   11222222  77776 46899998765      4577888888999999


Q ss_pred             EecCCcchHH
Q 030042          158 IGCDGIHSTV  167 (184)
Q Consensus       158 I~a~G~~s~~  167 (184)
                      |+|+|..+..
T Consensus       105 viAtG~~~~~  114 (437)
T 3sx6_A          105 MIATGPKLAF  114 (437)
T ss_dssp             EECCCCEECG
T ss_pred             EECCCCCcCc
Confidence            9999986644

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.26  E-value=5.6e-12  Score=96.77  Aligned_cols=35  Identities=34%  Similarity=0.536  Sum_probs=32.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|||+|||||++|+++|..|++.|.+|+|||+.+
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            36899999999999999999999999999999864

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.26  E-value=1.5e-11  Score=93.88  Aligned_cols=109  Identities=20%  Similarity=0.259  Sum_probs=75.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ++||+|||||++|+++|+.|++. .+|+|||+.+..++....                      ...             
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~----------------------~~~-------------  151 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL----------------------KGI-------------  151 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG----------------------TCS-------------
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec----------------------ccc-------------
Confidence            57999999999999999999999 999999998765433100                      000             


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEE-ecCc--EEEeeEEEec
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDGT--IVKTKFLIGC  160 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g~--~~~a~~vI~a  160 (184)
                        .   +     .+..  . ...++...+.+.+. +++++++++|.++...+   .. +.+.. .+++  .+.+|.+|+|
T Consensus       152 --~---~-----~g~~--~-~~~~~~~~l~~~l~~~v~~~~~~~v~~i~~~~---~~-~~~~~~~~~~~~~~~~d~lvlA  214 (493)
T 1y56_A          152 --K---Q-----EGFN--K-DSRKVVEELVGKLNENTKIYLETSALGVFDKG---EY-FLVPVVRGDKLIEILAKRVVLA  214 (493)
T ss_dssp             --E---E-----TTTT--E-EHHHHHHHHHHTCCTTEEEETTEEECCCEECS---SS-EEEEEEETTEEEEEEESCEEEC
T ss_pred             --c---c-----CCCC--C-CHHHHHHHHHHHHhcCCEEEcCCEEEEEEcCC---cE-EEEEEecCCeEEEEECCEEEEC
Confidence              0   0     0000  0 34556666655543 78889999999988765   33 44443 4453  6899999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      +|+...
T Consensus       215 tGa~~~  220 (493)
T 1y56_A          215 TGAIDS  220 (493)
T ss_dssp             CCEEEC
T ss_pred             CCCCcc
Confidence            998643

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.25  E-value=1.7e-11  Score=97.78  Aligned_cols=38  Identities=50%  Similarity=0.751  Sum_probs=35.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .+||+|||||++|+++|+.|++.|.+|+|+|+.+..++
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence            47999999999999999999999999999999877665

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.25  E-value=9.4e-12  Score=95.10  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=33.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC---CCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRL---GVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~---g~~v~vie~~~~~~~   42 (184)
                      ++||+|||||++|+++|+.|++.   |.+|+|||+.+ .++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG   41 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGG   41 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCC
Confidence            48999999999999999999999   99999999987 544

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.25  E-value=1.5e-11  Score=93.14  Aligned_cols=41  Identities=24%  Similarity=0.404  Sum_probs=34.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      |++.++||+|||||++|+++|+.|++.|.+|+|||+ ...++
T Consensus         1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG   41 (463)
T 4dna_A            1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGG   41 (463)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTH
T ss_pred             CCCCCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCC
Confidence            665679999999999999999999999999999999 44443

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.25  E-value=8.4e-13  Score=100.70  Aligned_cols=41  Identities=29%  Similarity=0.434  Sum_probs=35.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      |+..+|||+|||||++|+++|..|++.|.+|+|||++. .++
T Consensus         4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GG   44 (492)
T 3ic9_A            4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGT   44 (492)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSC
T ss_pred             CccCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCC
Confidence            44345899999999999999999999999999999964 443

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.25  E-value=8.2e-11  Score=87.81  Aligned_cols=107  Identities=22%  Similarity=0.272  Sum_probs=71.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCC--eEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVE--PLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~--v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .+|+|||||++|+++|..|++.|.+  |+|||+.+......     .+          +...+......           
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~-----~~----------l~~~~~~g~~~-----------   56 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDR-----PS----------LSKAVLDGSLE-----------   56 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCS-----GG----------GGTHHHHTSSS-----------
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCC-----cc----------ccHHHhCCCCC-----------
Confidence            4999999999999999999999987  99999976532110     00          00000000000           


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                        ...+              ...   .+++.+.  +++++.+++|+.+....      ..|.+.+|+++.+|.||+|||.
T Consensus        57 --~~~~--------------~~~---~~~~~~~--~i~~~~~~~v~~id~~~------~~v~~~~g~~~~~d~lvlAtG~  109 (410)
T 3ef6_A           57 --RPPI--------------LAE---ADWYGEA--RIDMLTGPEVTALDVQT------RTISLDDGTTLSADAIVIATGS  109 (410)
T ss_dssp             --SCCB--------------SSC---TTHHHHT--TCEEEESCCEEEEETTT------TEEEETTSCEEECSEEEECCCE
T ss_pred             --HHHh--------------cCC---HHHHHHC--CCEEEeCCEEEEEECCC------CEEEECCCCEEECCEEEEccCC
Confidence              0000              000   1112222  78999999999998765      5678888889999999999997


Q ss_pred             ch
Q 030042          164 HS  165 (184)
Q Consensus       164 ~s  165 (184)
                      ..
T Consensus       110 ~p  111 (410)
T 3ef6_A          110 RA  111 (410)
T ss_dssp             EE
T ss_pred             cc
Confidence            63

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.22  E-value=1.4e-11  Score=91.90  Aligned_cols=33  Identities=30%  Similarity=0.484  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHh---CCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKR---LGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~---~g~~v~vie~~~   38 (184)
                      .||+|||||++|+++|..|++   .|.+|+|||+.+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~   37 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR   37 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCC
Confidence            489999999999999999999   899999999976

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.21  E-value=4.8e-11  Score=90.70  Aligned_cols=38  Identities=34%  Similarity=0.586  Sum_probs=34.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      ++|||+|||||++|+++|+.|++.|.+|+|||+.+.++
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~g   39 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE   39 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccC
Confidence            47999999999999999999999999999999987543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.21  E-value=1.1e-10  Score=85.96  Aligned_cols=105  Identities=18%  Similarity=0.144  Sum_probs=68.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .|++|||||++|+++|..|++.| +|+|+|+.+....       ....+         ........              
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~-------~~~~l---------~~~~~g~~--------------   57 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYY-------SKPML---------SHYIAGFI--------------   57 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCC-------CSTTH---------HHHHTTSS--------------
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCcc-------ccchh---------HHHHhCCC--------------
Confidence            59999999999999999999999 9999999765321       00000         00000000              


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                          .+...        ...   ..+++.+.  +++++.+++|+.+....      +.|. .+|+++.+|.||+|||+..
T Consensus        58 ----~~~~~--------~~~---~~~~~~~~--~v~~~~g~~v~~id~~~------~~V~-~~g~~~~~d~lViATGs~p  113 (367)
T 1xhc_A           58 ----PRNRL--------FPY---SLDWYRKR--GIEIRLAEEAKLIDRGR------KVVI-TEKGEVPYDTLVLATGARA  113 (367)
T ss_dssp             ----CGGGG--------CSS---CHHHHHHH--TEEEECSCCEEEEETTT------TEEE-ESSCEEECSEEEECCCEEE
T ss_pred             ----CHHHh--------ccC---CHHHHHhC--CcEEEECCEEEEEECCC------CEEE-ECCcEEECCEEEECCCCCC
Confidence                00000        000   11222232  78999999999988764      4555 6778899999999999754

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.21  E-value=1.2e-10  Score=87.93  Aligned_cols=41  Identities=27%  Similarity=0.386  Sum_probs=37.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      +++||+|||+|++|+++|+.|++.|.+|+++|+++..++..
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~   59 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGET   59 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            46899999999999999999999999999999998776543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.21  E-value=6.4e-11  Score=90.08  Aligned_cols=35  Identities=29%  Similarity=0.479  Sum_probs=32.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +++||+|||||++|+++|+.|++.|.+|+|||++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46899999999999999999999999999999973

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.21  E-value=2.1e-10  Score=89.33  Aligned_cols=113  Identities=15%  Similarity=0.227  Sum_probs=71.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      .+.||+|||||++|+++|+.|++.  |.+|+|||+.+..+..       +......        +.....          
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~-------~~~lp~~--------~~g~~~----------   89 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFA-------NCGLPYY--------IGGVIT----------   89 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC-------GGGHHHH--------HTTSSC----------
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcccc-------CCCCchh--------hcCcCC----------
Confidence            457999999999999999999998  8899999998765311       1001000        000000          


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE-ecCc--EEEeeEEE
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDGT--IVKTKFLI  158 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g~--~~~a~~vI  158 (184)
                       .   ..           ....    ...+.+.+.. +++++++++|+++...+   .. +.+.. .+|+  .+.+|.||
T Consensus        90 -~---~~-----------~~~~----~~~~~~~~~~-gi~v~~~~~V~~id~~~---~~-v~v~~~~~g~~~~~~~d~lv  145 (588)
T 3ics_A           90 -E---RQ-----------KLLV----QTVERMSKRF-NLDIRVLSEVVKINKEE---KT-ITIKNVTTNETYNEAYDVLI  145 (588)
T ss_dssp             -C---GG-----------GGBS----SCHHHHHHHT-TCEEECSEEEEEEETTT---TE-EEEEETTTCCEEEEECSEEE
T ss_pred             -C---hH-----------Hhhc----cCHHHHHHhc-CcEEEECCEEEEEECCC---CE-EEEeecCCCCEEEEeCCEEE
Confidence             0   00           0000    0112222222 78899999999998765   33 55554 3455  78899999


Q ss_pred             ecCCcch
Q 030042          159 GCDGIHS  165 (184)
Q Consensus       159 ~a~G~~s  165 (184)
                      +|||...
T Consensus       146 iAtG~~p  152 (588)
T 3ics_A          146 LSPGAKP  152 (588)
T ss_dssp             ECCCEEE
T ss_pred             ECCCCCC
Confidence            9999754

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.20  E-value=3.1e-11  Score=91.47  Aligned_cols=36  Identities=31%  Similarity=0.590  Sum_probs=33.4

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |+++||+|||||++|+++|..|++.|.+|+|||+.+
T Consensus         4 m~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            4 MKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            336999999999999999999999999999999976

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.20  E-value=1.2e-10  Score=88.59  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=70.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      ++||+|||||++|+++|..|++.  |.+|+|||+.+..+....+       ...+        + ....           
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~-------~~~~--------~-~~~~-----------   88 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCG-------LPYV--------I-SGAI-----------   88 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGG-------HHHH--------H-TTSS-----------
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCC-------cchh--------h-cCCc-----------
Confidence            36999999999999999999986  8899999997754322111       1000        0 0000           


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE-ecCc--EEEeeEEEe
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDGT--IVKTKFLIG  159 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g~--~~~a~~vI~  159 (184)
                          .  .+.       .....    ..+.+.+.. +++++++++|+++...+   .. +.+.. .+|+  ++.+|.||+
T Consensus        89 ----~--~~~-------~l~~~----~~~~~~~~~-gv~~~~~~~v~~i~~~~---~~-v~v~~~~~g~~~~~~~d~lvi  146 (480)
T 3cgb_A           89 ----A--STE-------KLIAR----NVKTFRDKY-GIDAKVRHEVTKVDTEK---KI-VYAEHTKTKDVFEFSYDRLLI  146 (480)
T ss_dssp             ----S--CGG-------GGBSS----CHHHHHHTT-CCEEESSEEEEEEETTT---TE-EEEEETTTCCEEEEECSEEEE
T ss_pred             ----C--CHH-------Hhhhc----CHHHHHhhc-CCEEEeCCEEEEEECCC---CE-EEEEEcCCCceEEEEcCEEEE
Confidence                0  000       00000    112232322 78899999999998765   33 55655 4565  799999999


Q ss_pred             cCCcchH
Q 030042          160 CDGIHST  166 (184)
Q Consensus       160 a~G~~s~  166 (184)
                      |||....
T Consensus       147 AtG~~p~  153 (480)
T 3cgb_A          147 ATGVRPV  153 (480)
T ss_dssp             CCCEEEC
T ss_pred             CCCCccc
Confidence            9997653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.18  E-value=3.8e-11  Score=88.83  Aligned_cols=37  Identities=32%  Similarity=0.505  Sum_probs=30.8

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      |+ .++||+|||||++|+++|..|++.|.  +|+++|+..
T Consensus         1 M~-~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            1 MS-ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             ----CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CC-CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            55 36899999999999999999999984  689999864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.17  E-value=1.9e-10  Score=85.68  Aligned_cols=107  Identities=19%  Similarity=0.274  Sum_probs=69.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV--EPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .||+|||||++|+++|..|++.|.  +|+|||+.+.......     +          +...+..             ..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-----~----------l~~~~l~-------------~~   53 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRP-----P----------LSKAYLK-------------SG   53 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSG-----G----------GGTGGGG-------------SC
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCc-----c----------CCHHHHC-------------CC
Confidence            589999999999999999999998  8999999764311100     0          0000000             00


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                                   .........   ...++.+.  +++++. ++|+++....      ..+.+.+|+++.+|.||+|||.
T Consensus        54 -------------~~~~~~~~~---~~~~~~~~--~i~~~~-~~v~~id~~~------~~v~~~~g~~~~~d~lvlAtG~  108 (404)
T 3fg2_P           54 -------------GDPNSLMFR---PEKFFQDQ--AIELIS-DRMVSIDREG------RKLLLASGTAIEYGHLVLATGA  108 (404)
T ss_dssp             -------------CCTTSSBSS---CHHHHHHT--TEEEEC-CCEEEEETTT------TEEEESSSCEEECSEEEECCCE
T ss_pred             -------------CCHHHccCC---CHHHHHhC--CCEEEE-EEEEEEECCC------CEEEECCCCEEECCEEEEeeCC
Confidence                         000000011   11222222  788888 8999998765      4577888889999999999997


Q ss_pred             ch
Q 030042          164 HS  165 (184)
Q Consensus       164 ~s  165 (184)
                      ..
T Consensus       109 ~p  110 (404)
T 3fg2_P          109 RN  110 (404)
T ss_dssp             EE
T ss_pred             Cc
Confidence            43

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.17  E-value=1.7e-11  Score=93.45  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=32.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ++|||+|||||++|+++|..|++.|.+|+|||+.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~   38 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYV   38 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEec
Confidence            4699999999999999999999999999999983

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.17  E-value=5.9e-11  Score=89.09  Aligned_cols=104  Identities=26%  Similarity=0.354  Sum_probs=66.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .+|+|||||++|+++|..|++.+  .+|+|||+.+...       +.|..          ..+.........+.      
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~-------~~p~l----------~~v~~g~~~~~~i~------   59 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG-------FTPAF----------PHLAMGWRKFEDIS------   59 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE-------CGGGH----------HHHHHTCSCGGGSE------
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc-------cCccH----------HHHhcCCCCHHHhh------
Confidence            37999999999999999999865  6899999876421       11111          11111111111110      


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                           .+.               ..   .+.+.  +++++.+ +|++++..+      -+|.+++|+++.+|++|+|+|+
T Consensus        60 -----~~~---------------~~---~~~~~--gv~~i~~-~v~~Id~~~------~~V~~~~g~~i~YD~LViAtG~  107 (430)
T 3hyw_A           60 -----VPL---------------AP---LLPKF--NIEFINE-KAESIDPDA------NTVTTQSGKKIEYDYLVIATGP  107 (430)
T ss_dssp             -----EES---------------TT---TGGGG--TEEEECS-CEEEEETTT------TEEEETTCCEEECSEEEECCCC
T ss_pred             -----hcH---------------HH---HHHHC--CcEEEEe-EEEEEECCC------CEEEECCCCEEECCEEEEeCCC
Confidence                 000               00   11111  6777654 799998775      5688899999999999999997


Q ss_pred             c
Q 030042          164 H  164 (184)
Q Consensus       164 ~  164 (184)
                      .
T Consensus       108 ~  108 (430)
T 3hyw_A          108 K  108 (430)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.16  E-value=1.4e-10  Score=88.12  Aligned_cols=34  Identities=35%  Similarity=0.539  Sum_probs=32.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      .++||+|||||++|+++|+.|++.|.+|+|||+.
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~   52 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH   52 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4689999999999999999999999999999976

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.16  E-value=1.4e-11  Score=93.96  Aligned_cols=132  Identities=13%  Similarity=0.169  Sum_probs=72.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      .++||+|||||++|+++|..|++.  +.+|+|||+.+.......     +-+..++.  +.....      .....+..+
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~-----~lsk~l~~--~~~~~~------~~~~~~~~~   76 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP-----PLSKELWF--SDDPNV------TKTLRFKQW   76 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG-----GGGTGGGC--C--CTH------HHHCEEECT
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCC-----CCCHHhhc--CCccch------hhccccccc
Confidence            468999999999999999999877  789999999865321100     00000000  000000      000111111


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC-CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEec
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL-PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGC  160 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a  160 (184)
                      .... ..+.+...     . +......+    .+.. .+++++.+++|+++...+      ..|.+.+|+++.+|.||+|
T Consensus        77 ~~~~-~~~~~~~~-----~-~~~~~~~l----~~~~~~gv~~~~g~~v~~id~~~------~~V~~~~g~~i~yd~lviA  139 (493)
T 1m6i_A           77 NGKE-RSIYFQPP-----S-FYVSAQDL----PHIENGGVAVLTGKKVVQLDVRD------NMVKLNDGSQITYEKCLIA  139 (493)
T ss_dssp             TSCE-EESBSSCG-----G-GSBCTTTT----TTSTTCEEEEEETCCEEEEEGGG------TEEEETTSCEEEEEEEEEC
T ss_pred             cccc-ccccccch-----H-hhcchhhh----hhhhcCCeEEEcCCEEEEEECCC------CEEEECCCCEEECCEEEEC
Confidence            1000 00001000     0 00011111    1111 278899999999998765      5577788889999999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      ||+..
T Consensus       140 TGs~p  144 (493)
T 1m6i_A          140 TGGTP  144 (493)
T ss_dssp             CCEEE
T ss_pred             CCCCC
Confidence            99754

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.15  E-value=1.4e-10  Score=89.90  Aligned_cols=111  Identities=18%  Similarity=0.216  Sum_probs=69.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            6 KDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .||+|||||++|+++|+.|++.  +.+|+|||+.+..+..       +.....+        +......           
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~-------~~~l~~~--------~~~~~~~-----------   55 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFA-------NCGLPYH--------ISGEIAQ-----------   55 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC-------GGGHHHH--------HTSSSCC-----------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccc-------ccCchHH--------hcCCcCC-----------
Confidence            4899999999999999999988  7899999998765311       1011000        0000000           


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE-ecC--cEEEeeEEEec
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDG--TIVKTKFLIGC  160 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g--~~~~a~~vI~a  160 (184)
                                    ......-....+    .+.. +++++++++|+++...+   .. +.+.. .+|  .++.+|.||+|
T Consensus        56 --------------~~~~~~~~~~~~----~~~~-~i~~~~~~~V~~id~~~---~~-v~~~~~~~g~~~~~~~d~lviA  112 (565)
T 3ntd_A           56 --------------RSALVLQTPESF----KARF-NVEVRVKHEVVAIDRAA---KL-VTVRRLLDGSEYQESYDTLLLS  112 (565)
T ss_dssp             --------------GGGGBCCCHHHH----HHHH-CCEEETTEEEEEEETTT---TE-EEEEETTTCCEEEEECSEEEEC
T ss_pred             --------------hHHhhccCHHHH----HHhc-CcEEEECCEEEEEECCC---CE-EEEEecCCCCeEEEECCEEEEC
Confidence                          000000011222    2221 78899999999998765   33 55554 234  37899999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      ||...
T Consensus       113 tG~~p  117 (565)
T 3ntd_A          113 PGAAP  117 (565)
T ss_dssp             CCEEE
T ss_pred             CCCCC
Confidence            99854

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.15  E-value=3e-10  Score=87.30  Aligned_cols=40  Identities=30%  Similarity=0.459  Sum_probs=35.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .++||+|||||++|+++|+.|++.|.+|+|||+.+..++.
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~   81 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS   81 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            4689999999999999999999999999999998765544

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.15  E-value=2.4e-11  Score=91.75  Aligned_cols=113  Identities=14%  Similarity=0.180  Sum_probs=69.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            6 KDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      +||+|||||++|+++|..|++.  |.+|+|+|+.+..+..+.       ....+        + ..  ....        
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-------~~~~~--------~-~g--~~~~--------   54 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC-------GIALY--------L-GK--EIKN--------   54 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG-------GHHHH--------H-TT--CBGG--------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc-------cchhh--------h-cC--Cccc--------
Confidence            5899999999999999999998  999999999875432211       01000        0 00  0000        


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe-c--CcEEEeeEEEec
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV-D--GTIVKTKFLIGC  160 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-~--g~~~~a~~vI~a  160 (184)
                           ..+..       . ...   +.+.+.+.  +++++++++++.+...+   .. +.+... +  ++++.+|.+|+|
T Consensus        55 -----~~~~~-------~-~~~---~~~~~~~~--gv~~~~~~~v~~i~~~~---~~-v~v~~~~~g~~~~~~~d~lviA  112 (452)
T 2cdu_A           55 -----NDPRG-------L-FYS---SPEELSNL--GANVQMRHQVTNVDPET---KT-IKVKDLITNEEKTEAYDKLIMT  112 (452)
T ss_dssp             -----GCGGG-------G-BSC---CHHHHHHT--TCEEEESEEEEEEEGGG---TE-EEEEETTTCCEEEEECSEEEEC
T ss_pred             -----CCHHH-------h-hhc---CHHHHHHc--CCEEEeCCEEEEEEcCC---CE-EEEEecCCCceEEEECCEEEEc
Confidence                 00000       0 000   11222222  78899999999998764   33 555441 2  457999999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      ||....
T Consensus       113 tGs~p~  118 (452)
T 2cdu_A          113 TGSKPT  118 (452)
T ss_dssp             CCEEEC
T ss_pred             cCCCcC
Confidence            997654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.14  E-value=2.5e-10  Score=86.08  Aligned_cols=111  Identities=19%  Similarity=0.207  Sum_probs=69.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            6 KDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+..+..++       .....        +.....           .
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-------~~~~~--------~~~~~~-----------~   54 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSA-------GMQLY--------LEGKVK-----------D   54 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGG-------GHHHH--------HTTSSC-----------C
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccc-------cchhh--------hcCccC-----------C
Confidence            3899999999999999999997  899999999875432211       01000        000000           0


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE-ecCc--EEEeeEEEec
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDGT--IVKTKFLIGC  160 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g~--~~~a~~vI~a  160 (184)
                        ...            ....    +.+.+.+.  +++++.+++++++...+   .. +.+.. .+|+  ++.+|.||+|
T Consensus        55 --~~~------------~~~~----~~~~~~~~--gv~~~~~~~v~~i~~~~---~~-v~~~~~~~g~~~~~~~d~lviA  110 (447)
T 1nhp_A           55 --VNS------------VRYM----TGEKMESR--GVNVFSNTEITAIQPKE---HQ-VTVKDLVSGEERVENYDKLIIS  110 (447)
T ss_dssp             --GGG------------SBSC----CHHHHHHT--TCEEEETEEEEEEETTT---TE-EEEEETTTCCEEEEECSEEEEC
T ss_pred             --HHH------------hhcC----CHHHHHHC--CCEEEECCEEEEEeCCC---CE-EEEEecCCCceEEEeCCEEEEc
Confidence              000            0000    11223332  78899999999998765   33 55554 3454  4899999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      ||....
T Consensus       111 tG~~p~  116 (447)
T 1nhp_A          111 PGAVPF  116 (447)
T ss_dssp             CCEEEC
T ss_pred             CCCCcC
Confidence            997643

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.14  E-value=1.6e-10  Score=87.52  Aligned_cols=39  Identities=31%  Similarity=0.445  Sum_probs=34.3

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      |+ +++||+|||||++|+++|..|++.|.+|+|||+. ..+
T Consensus         1 M~-~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~G   39 (463)
T 2r9z_A            1 MT-QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALG   39 (463)
T ss_dssp             -C-CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTT
T ss_pred             CC-ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCC
Confidence            64 4699999999999999999999999999999997 443

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.13  E-value=4.1e-10  Score=85.89  Aligned_cols=32  Identities=28%  Similarity=0.394  Sum_probs=30.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCCeEEEe
Q 030042            4 VEKDVVIIGAGIAGLATALALKR-LGVEPLVLE   35 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~-~g~~v~vie   35 (184)
                      .++||+|||||++|+++|+.|++ .|.+|+|||
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            46899999999999999999999 999999999

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.13  E-value=5.8e-10  Score=82.49  Aligned_cols=108  Identities=20%  Similarity=0.312  Sum_probs=79.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ..+++|||+|++|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  183 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG-----------------------------------------  183 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc-----------------------------------------
Confidence            357999999999999999999999999999987643110                                         


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~  164 (184)
                            +     .  .  .--...+.+.+.+.  +++++.+++|+++...+   +. +.+.+.+|+++.+|.||.|+|..
T Consensus       184 ------~-----~--~--~~~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~d~vv~a~G~~  242 (384)
T 2v3a_A          184 ------L-----L--H--PAAAKAVQAGLEGL--GVRFHLGPVLASLKKAG---EG-LEAHLSDGEVIPCDLVVSAVGLR  242 (384)
T ss_dssp             ------T-----S--C--HHHHHHHHHHHHTT--TCEEEESCCEEEEEEET---TE-EEEEETTSCEEEESEEEECSCEE
T ss_pred             ------c-----c--C--HHHHHHHHHHHHHc--CCEEEeCCEEEEEEecC---CE-EEEEECCCCEEECCEEEECcCCC
Confidence                  0     0  0  00012333444433  89999999999998764   44 77888889899999999999986


Q ss_pred             hH--HHhhhCCC
Q 030042          165 ST--VAWWLGLS  174 (184)
Q Consensus       165 s~--~~~~~~~~  174 (184)
                      +.  +.+.+++.
T Consensus       243 p~~~l~~~~g~~  254 (384)
T 2v3a_A          243 PRTELAFAAGLA  254 (384)
T ss_dssp             ECCHHHHHTTCC
T ss_pred             cCHHHHHHCCCC
Confidence            63  45555554

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.10  E-value=8.3e-10  Score=82.05  Aligned_cols=105  Identities=15%  Similarity=0.196  Sum_probs=67.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      .+|+|||||++|+++|..|++.+  .+|+|||+++.....       +          .+..+.........+       
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~-------p----------~~~~v~~g~~~~~~~-------   58 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC-------Y----------MSNEVIGGDRELASL-------   58 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS-------T----------THHHHHHTSSCGGGG-------
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc-------c----------CHHHHhcCCCCHHHH-------
Confidence            47999999999999999998875  589999987642211       1          111111111100000       


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                                         ......+    .+.  +++++. .+|+++...+      ..+.+.+|+++.+|++|+|+|.
T Consensus        59 -------------------~~~~~~~----~~~--gv~~i~-~~v~~id~~~------~~v~~~~g~~i~yd~LviAtG~  106 (401)
T 3vrd_B           59 -------------------RVGYDGL----RAH--GIQVVH-DSALGIDPDK------KLVKTAGGAEFAYDRCVVAPGI  106 (401)
T ss_dssp             -------------------EECSHHH----HHT--TCEEEC-SCEEEEETTT------TEEEETTSCEEECSEEEECCCE
T ss_pred             -------------------hhCHHHH----HHC--CCEEEE-eEEEEEEccC------cEEEecccceeecceeeeccCC
Confidence                               1111222    222  677765 4788988765      5578889999999999999997


Q ss_pred             chH
Q 030042          164 HST  166 (184)
Q Consensus       164 ~s~  166 (184)
                      ...
T Consensus       107 ~~~  109 (401)
T 3vrd_B          107 DLL  109 (401)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.09  E-value=1.1e-09  Score=82.71  Aligned_cols=98  Identities=20%  Similarity=0.357  Sum_probs=74.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+.+|..|++.|.+|+++|+.+.....     .                                    
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-----~------------------------------------  206 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-----M------------------------------------  206 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----S------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-----c------------------------------------
Confidence            47999999999999999999999999999987543110     0                                    


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                    .  .--...+.+.+.+.  +++++.+++|+++...+   +. +.+.+.+|+++.+|.||.|+|..+
T Consensus       207 --------------~--~~~~~~l~~~l~~~--Gv~i~~~~~V~~i~~~~---~~-v~v~~~~g~~i~~D~vv~A~G~~p  264 (455)
T 2yqu_A          207 --------------D--LEVSRAAERVFKKQ--GLTIRTGVRVTAVVPEA---KG-ARVELEGGEVLEADRVLVAVGRRP  264 (455)
T ss_dssp             --------------C--HHHHHHHHHHHHHH--TCEEECSCCEEEEEEET---TE-EEEEETTSCEEEESEEEECSCEEE
T ss_pred             --------------C--HHHHHHHHHHHHHC--CCEEEECCEEEEEEEeC---CE-EEEEECCCeEEEcCEEEECcCCCc
Confidence                          0  00012334444444  89999999999998765   44 777777888999999999999876


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       265 ~  265 (455)
T 2yqu_A          265 Y  265 (455)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.08  E-value=1.4e-09  Score=82.15  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=32.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      |+ +++||+|||||++|+++|+.|++.|.+|+|||+.
T Consensus         1 M~-~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (450)
T 1ges_A            1 MT-KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK   36 (450)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CC-ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC
Confidence            54 4689999999999999999999999999999997

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.07  E-value=2.9e-10  Score=86.83  Aligned_cols=32  Identities=31%  Similarity=0.474  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHh-CCCCeEEEec
Q 030042            5 EKDVVIIGAGIAGLATALALKR-LGVEPLVLEK   36 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~-~g~~v~vie~   36 (184)
                      ++||+|||||++|+++|+.|++ .|.+|+|||+
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            6899999999999999999999 9999999993

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.06  E-value=9.2e-10  Score=83.29  Aligned_cols=39  Identities=28%  Similarity=0.606  Sum_probs=34.4

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      +.++|++|||||++|+++|..|++.|.+|+|||+ ...++
T Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG   41 (458)
T 1lvl_A            3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGG   41 (458)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCC
Confidence            3568999999999999999999999999999999 44443

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.05  E-value=1.2e-09  Score=83.17  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=31.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      .+|||+|||||++|+++|+.|++.|.+|+|||+.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            4699999999999999999999999999999953

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.04  E-value=1.9e-09  Score=88.28  Aligned_cols=39  Identities=38%  Similarity=0.605  Sum_probs=35.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .+||+|||||++|+++|..|++.|.+|+|||+.+.+++.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~  166 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGT  166 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCce
Confidence            579999999999999999999999999999998776533

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.02  E-value=2.4e-09  Score=81.10  Aligned_cols=98  Identities=19%  Similarity=0.273  Sum_probs=72.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+|+|+.+.+...                                          
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  207 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ------------------------------------------  207 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc------------------------------------------
Confidence            47999999999999999999999999999987643110                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe-c--Cc--EEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV-D--GT--IVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-~--g~--~~~a~~vI~a  160 (184)
                           +.      ..    -...+.+.+.+.  |++++++++|+++...+   +. +.+.+. +  |+  ++.+|.||.|
T Consensus       208 -----~~------~~----~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~i~~D~vv~a  266 (464)
T 2eq6_A          208 -----GD------PE----TAALLRRALEKE--GIRVRTKTKAVGYEKKK---DG-LHVRLEPAEGGEGEEVVVDKVLVA  266 (464)
T ss_dssp             -----SC------HH----HHHHHHHHHHHT--TCEEECSEEEEEEEEET---TE-EEEEEEETTCCSCEEEEESEEEEC
T ss_pred             -----cC------HH----HHHHHHHHHHhc--CCEEEcCCEEEEEEEeC---CE-EEEEEeecCCCceeEEEcCEEEEC
Confidence                 00      00    012333444443  89999999999998764   33 566665 6  76  8999999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      +|..+.
T Consensus       267 ~G~~p~  272 (464)
T 2eq6_A          267 VGRKPR  272 (464)
T ss_dssp             SCEEES
T ss_pred             CCcccC
Confidence            998653

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=99.01  E-value=2.5e-10  Score=82.65  Aligned_cols=39  Identities=31%  Similarity=0.517  Sum_probs=34.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHh--CCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKR--LGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~--~g~~v~vie~~~~~~~~   43 (184)
                      ++||+||||||+||++|++|++  .|++|+|||+.+.+++.
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~  105 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG  105 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCce
Confidence            5899999999999999999974  59999999998877654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.99  E-value=4.4e-10  Score=84.78  Aligned_cols=44  Identities=39%  Similarity=0.658  Sum_probs=39.1

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      |.+.++||+|||||++|+++|+.|++.|.+|+|+|+.+.+++..
T Consensus         1 m~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~   44 (453)
T 2yg5_A            1 VPTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRT   44 (453)
T ss_dssp             -CEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTC
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCce
Confidence            66678999999999999999999999999999999988876553

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.99  E-value=1.3e-09  Score=86.31  Aligned_cols=39  Identities=33%  Similarity=0.527  Sum_probs=35.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .+||+|||||++|+++|+.|++.|++|+|||+.+..++.
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~  429 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGR  429 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCE
Confidence            579999999999999999999999999999998766543

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.98  E-value=3.8e-10  Score=86.79  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +||++|||+|++|+.+|..+++.|.+|+|||+...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            48999999999999999999999999999998653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.98  E-value=5.7e-09  Score=78.77  Aligned_cols=99  Identities=22%  Similarity=0.306  Sum_probs=74.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.+...     +.             ++                    
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~-------------~~--------------------  209 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-----FD-------------PM--------------------  209 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----SC-------------HH--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-----hh-------------HH--------------------
Confidence            47999999999999999999999999999987542100     00             00                    


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                         -...+.+.+.+.  +++++++++|+++...++  .. +.+.+.+|+++.+|.||.|+|..+
T Consensus       210 -------------------~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~--~~-~~v~~~~g~~i~~D~vv~a~G~~p  265 (450)
T 1ges_A          210 -------------------ISETLVEVMNAE--GPQLHTNAIPKAVVKNTD--GS-LTLELEDGRSETVDCLIWAIGREP  265 (450)
T ss_dssp             -------------------HHHHHHHHHHHH--SCEEECSCCEEEEEECTT--SC-EEEEETTSCEEEESEEEECSCEEE
T ss_pred             -------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEeCC--cE-EEEEECCCcEEEcCEEEECCCCCc
Confidence                               013344445444  899999999999987541  22 678888888899999999999866


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       266 ~  266 (450)
T 1ges_A          266 A  266 (450)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.98  E-value=1e-08  Score=76.62  Aligned_cols=109  Identities=20%  Similarity=0.278  Sum_probs=78.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ..+++|||+|..|+-+|..|++.|.+|+++++.+.+....                                        
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~----------------------------------------  191 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV----------------------------------------  191 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh----------------------------------------
Confidence            3579999999999999999999999999999876531100                                        


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~  164 (184)
                                  ....    -...+.+.+.+.  |++++++++|+++...+  +.. ..|.+.+|+++.||.||.|+|..
T Consensus       192 ------------~~~~----~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~--~~v-~~v~l~dG~~i~aD~Vv~a~G~~  250 (415)
T 3lxd_A          192 ------------AGEA----LSEFYQAEHRAH--GVDLRTGAAMDCIEGDG--TKV-TGVRMQDGSVIPADIVIVGIGIV  250 (415)
T ss_dssp             ------------SCHH----HHHHHHHHHHHT--TCEEEETCCEEEEEESS--SBE-EEEEESSSCEEECSEEEECSCCE
T ss_pred             ------------cCHH----HHHHHHHHHHhC--CCEEEECCEEEEEEecC--CcE-EEEEeCCCCEEEcCEEEECCCCc
Confidence                        0000    012233333333  89999999999998764  232 57888999999999999999986


Q ss_pred             hH--HHhhhCCC
Q 030042          165 ST--VAWWLGLS  174 (184)
Q Consensus       165 s~--~~~~~~~~  174 (184)
                      ..  +.+.+++.
T Consensus       251 p~~~l~~~~gl~  262 (415)
T 3lxd_A          251 PCVGALISAGAS  262 (415)
T ss_dssp             ESCHHHHHTTCC
T ss_pred             cChHHHHhCCCC
Confidence            53  45555554

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.97  E-value=1e-08  Score=77.62  Aligned_cols=98  Identities=26%  Similarity=0.292  Sum_probs=74.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++|+.+.+...     +.             ++                    
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-----~~-------------~~--------------------  208 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-----FD-------------PL--------------------  208 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----SC-------------HH--------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-----cC-------------HH--------------------
Confidence            47999999999999999999999999999987543100     00             00                    


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCc-EEEeeEEEecCCcc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT-IVKTKFLIGCDGIH  164 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~-~~~a~~vI~a~G~~  164 (184)
                                         ....+.+.+.+.  +++++.+++|+++...+   +. +.|.+.+|+ ++.+|.||.|+|..
T Consensus       209 -------------------~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~---~~-~~v~~~~G~~~i~~D~vv~a~G~~  263 (463)
T 2r9z_A          209 -------------------LSATLAENMHAQ--GIETHLEFAVAALERDA---QG-TTLVAQDGTRLEGFDSVIWAVGRA  263 (463)
T ss_dssp             -------------------HHHHHHHHHHHT--TCEEESSCCEEEEEEET---TE-EEEEETTCCEEEEESEEEECSCEE
T ss_pred             -------------------HHHHHHHHHHHC--CCEEEeCCEEEEEEEeC---Ce-EEEEEeCCcEEEEcCEEEECCCCC
Confidence                               012334444444  89999999999998764   34 778888998 89999999999986


Q ss_pred             hH
Q 030042          165 ST  166 (184)
Q Consensus       165 s~  166 (184)
                      +.
T Consensus       264 p~  265 (463)
T 2r9z_A          264 PN  265 (463)
T ss_dssp             ES
T ss_pred             cC
Confidence            53

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.97  E-value=7.6e-10  Score=82.80  Aligned_cols=43  Identities=37%  Similarity=0.622  Sum_probs=37.5

Q ss_pred             CC-CccccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCCCCCc
Q 030042            1 MA-MVEKDVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRGT   43 (184)
Q Consensus         1 m~-~~~~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~~~~~   43 (184)
                      |+ .+.+||+|||||++||++|+.|++.| .+|+|+|+.+.+++.
T Consensus         1 M~~~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~   45 (424)
T 2b9w_A            1 MSISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGK   45 (424)
T ss_dssp             -CCCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTT
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCc
Confidence            65 35789999999999999999999999 899999998887653

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.96  E-value=5.7e-09  Score=78.51  Aligned_cols=110  Identities=16%  Similarity=0.163  Sum_probs=66.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      +|+|||||++|+++|..|++.|.  +|+|||+.+.......       .+.         .+.....             
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-------~l~---------~~~~~~~-------------   52 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC-------ALP---------YVIGEVV-------------   52 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG-------GHH---------HHHTTSS-------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc-------hhH---------HHHcCCc-------------
Confidence            69999999999999999999884  6999999764321110       010         0000000             


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec---CcEEEeeEEEecC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---GTIVKTKFLIGCD  161 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g~~~~a~~vI~a~  161 (184)
                        ....         .........+.   .+.  +++++.+++|+++....   .. +.+....   +..+.+|.+|+||
T Consensus        53 --~~~~---------~~~~~~~~~~~---~~~--~i~~~~~~~V~~id~~~---~~-~~~~~~~~~~~~~~~yd~lVIAT  112 (437)
T 4eqs_A           53 --EDRR---------YALAYTPEKFY---DRK--QITVKTYHEVIAINDER---QT-VSVLNRKTNEQFEESYDKLILSP  112 (437)
T ss_dssp             --CCGG---------GTBCCCHHHHH---HHH--CCEEEETEEEEEEETTT---TE-EEEEETTTTEEEEEECSEEEECC
T ss_pred             --cchh---------hhhhcCHHHHH---Hhc--CCEEEeCCeEEEEEccC---cE-EEEEeccCCceEEEEcCEEEECC
Confidence              0000         00011122222   222  78899999999998765   33 4444322   2468899999999


Q ss_pred             Ccch
Q 030042          162 GIHS  165 (184)
Q Consensus       162 G~~s  165 (184)
                      |+..
T Consensus       113 Gs~p  116 (437)
T 4eqs_A          113 GASA  116 (437)
T ss_dssp             CEEE
T ss_pred             CCcc
Confidence            9764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.95  E-value=7.6e-09  Score=77.02  Aligned_cols=108  Identities=21%  Similarity=0.262  Sum_probs=78.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++.+......                                         
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----------------------------------------  181 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV-----------------------------------------  181 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-----------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc-----------------------------------------
Confidence            479999999999999999999999999999875431100                                         


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ....    -...+.+.+.+.  |++++++++|+++...+  +.. ..|.+.+|+++.||.||.|+|..+
T Consensus       182 -----------~~~~----~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~--~~v-~~V~~~dG~~i~aD~Vv~a~G~~p  241 (404)
T 3fg2_P          182 -----------VTPE----ISSYFHDRHSGA--GIRMHYGVRATEIAAEG--DRV-TGVVLSDGNTLPCDLVVVGVGVIP  241 (404)
T ss_dssp             -----------SCHH----HHHHHHHHHHHT--TCEEECSCCEEEEEEET--TEE-EEEEETTSCEEECSEEEECCCEEE
T ss_pred             -----------cCHH----HHHHHHHHHHhC--CcEEEECCEEEEEEecC--CcE-EEEEeCCCCEEEcCEEEECcCCcc
Confidence                       0000    012233333333  89999999999998765  233 568889999999999999999855


Q ss_pred             --HHHhhhCCC
Q 030042          166 --TVAWWLGLS  174 (184)
Q Consensus       166 --~~~~~~~~~  174 (184)
                        .+.+.+++.
T Consensus       242 ~~~l~~~~gl~  252 (404)
T 3fg2_P          242 NVEIAAAAGLP  252 (404)
T ss_dssp             CCHHHHHTTCC
T ss_pred             CHHHHHhCCCC
Confidence              355556554

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.95  E-value=9.3e-10  Score=83.14  Aligned_cols=42  Identities=29%  Similarity=0.424  Sum_probs=38.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccce
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA   46 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~   46 (184)
                      ++||+|||+|++||++|+.|++.|.+|+|+|+++.+|+..++
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            589999999999999999999999999999999988776544

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.94  E-value=5.3e-09  Score=78.05  Aligned_cols=107  Identities=20%  Similarity=0.271  Sum_probs=78.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++.+.+...                     .+                   
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~---------------------~~-------------------  183 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR---------------------VL-------------------  183 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHH---------------------HH-------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchh---------------------hc-------------------
Confidence            57999999999999999999999999999987653100                     00                   


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                            .      .    --...+.+.+.+.  |++++++++|.++..++   .. ..|.+.+|+++.+|.||.|+|..+
T Consensus       184 ------~------~----~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~---~~-~~v~~~dg~~i~aD~Vv~a~G~~p  241 (410)
T 3ef6_A          184 ------G------R----RIGAWLRGLLTEL--GVQVELGTGVVGFSGEG---QL-EQVMASDGRSFVADSALICVGAEP  241 (410)
T ss_dssp             ------C------H----HHHHHHHHHHHHH--TCEEECSCCEEEEECSS---SC-CEEEETTSCEEECSEEEECSCEEE
T ss_pred             ------C------H----HHHHHHHHHHHHC--CCEEEeCCEEEEEeccC---cE-EEEEECCCCEEEcCEEEEeeCCee
Confidence                  0      0    0012334444444  89999999999998754   33 678889999999999999999865


Q ss_pred             --HHHhhhCCC
Q 030042          166 --TVAWWLGLS  174 (184)
Q Consensus       166 --~~~~~~~~~  174 (184)
                        .+.+.+++.
T Consensus       242 ~~~l~~~~gl~  252 (410)
T 3ef6_A          242 ADQLARQAGLA  252 (410)
T ss_dssp             CCHHHHHTTCC
T ss_pred             cHHHHHhCCCc
Confidence              355556554

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.93  E-value=8.6e-09  Score=77.74  Aligned_cols=99  Identities=18%  Similarity=0.245  Sum_probs=70.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ..+++|||||++|+.+|..|++.|.+|+++|+.+.+....                                        
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------------  188 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY----------------------------------------  188 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccccc----------------------------------------
Confidence            4689999999999999999999999999999976431100                                        


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~  164 (184)
                                  ....    -...+.+.+.+.  +++++++++|+++...+   .. +.+.+ +++++.+|.||.|+|..
T Consensus       189 ------------~~~~----~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~---~v-~~v~~-~~~~i~~d~vi~a~G~~  245 (447)
T 1nhp_A          189 ------------LDKE----FTDVLTEEMEAN--NITIATGETVERYEGDG---RV-QKVVT-DKNAYDADLVVVAVGVR  245 (447)
T ss_dssp             ------------CCHH----HHHHHHHHHHTT--TEEEEESCCEEEEECSS---BC-CEEEE-SSCEEECSEEEECSCEE
T ss_pred             ------------CCHH----HHHHHHHHHHhC--CCEEEcCCEEEEEEccC---cE-EEEEE-CCCEEECCEEEECcCCC
Confidence                        0000    012333333333  89999999999998653   22 34555 45689999999999976


Q ss_pred             hH
Q 030042          165 ST  166 (184)
Q Consensus       165 s~  166 (184)
                      +.
T Consensus       246 p~  247 (447)
T 1nhp_A          246 PN  247 (447)
T ss_dssp             ES
T ss_pred             CC
Confidence            53

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.90  E-value=1.8e-08  Score=75.65  Aligned_cols=108  Identities=16%  Similarity=0.198  Sum_probs=77.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.+....                                         
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~-----------------------------------------  188 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV-----------------------------------------  188 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-----------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccch-----------------------------------------
Confidence            479999999999999999999999999999865421100                                         


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEec--cCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDS--QTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~--~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                                 ..+.    -...+.+.+.+.  |++++.+++|+++..  .+  +.. ..|.+.+|+++.+|.||.|+|.
T Consensus       189 -----------~~~~----~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~--~~v-~~v~~~~G~~i~~D~Vv~a~G~  248 (431)
T 1q1r_A          189 -----------TAPP----VSAFYEHLHREA--GVDIRTGTQVCGFEMSTDQ--QKV-TAVLCEDGTRLPADLVIAGIGL  248 (431)
T ss_dssp             -----------SCHH----HHHHHHHHHHHH--TCEEECSCCEEEEEECTTT--CCE-EEEEETTSCEEECSEEEECCCE
T ss_pred             -----------hhHH----HHHHHHHHHHhC--CeEEEeCCEEEEEEeccCC--CcE-EEEEeCCCCEEEcCEEEECCCC
Confidence                       0000    012233444444  899999999999986  33  232 4688888989999999999997


Q ss_pred             ch--HHHhhhCCC
Q 030042          164 HS--TVAWWLGLS  174 (184)
Q Consensus       164 ~s--~~~~~~~~~  174 (184)
                      .+  .+.+.+++.
T Consensus       249 ~p~~~l~~~~gl~  261 (431)
T 1q1r_A          249 IPNCELASAAGLQ  261 (431)
T ss_dssp             EECCHHHHHTTCC
T ss_pred             CcCcchhhccCCC
Confidence            54  355555543

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.90  E-value=1.7e-09  Score=80.37  Aligned_cols=39  Identities=28%  Similarity=0.457  Sum_probs=35.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~~~~~   43 (184)
                      ++||+|||||++|+++|+.|++. |.+|+|+|+.+..++.
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~   46 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGN   46 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCe
Confidence            68999999999999999999998 9999999998876543

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.90  E-value=3.4e-09  Score=80.99  Aligned_cols=61  Identities=33%  Similarity=0.520  Sum_probs=48.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcccee------------ee---cccHHHHHHHcCChHH
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI------------SF---APNAWLALDALGVSHK   65 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~------------~~---~~~~~~~~~~~~~~~~   65 (184)
                      .+||+|||||++||++|+.|++.|++|+|+|+.+..++.....            .+   .+...++++++|+...
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~   88 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREK   88 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCccc
Confidence            4799999999999999999999999999999998887643211            11   2456778888887644

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.90  E-value=1.2e-08  Score=77.51  Aligned_cols=100  Identities=21%  Similarity=0.263  Sum_probs=71.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.+...     +.                                   
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~-----------------------------------  223 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-----MD-----------------------------------  223 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-----SC-----------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-----cC-----------------------------------
Confidence            47999999999999999999999999999997653211     00                                   


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe-----cCcEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV-----DGTIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-----~g~~~~a~~vI~a  160 (184)
                                   ..    -...+.+.+.+.  +++++++++|+++...++ ++. +.+.+.     +++++.+|.||.|
T Consensus       224 -------------~~----~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~-~~~-~~v~~~~~~~g~~~~~~~D~vv~a  282 (478)
T 1v59_A          224 -------------GE----VAKATQKFLKKQ--GLDFKLSTKVISAKRNDD-KNV-VEIVVEDTKTNKQENLEAEVLLVA  282 (478)
T ss_dssp             -------------HH----HHHHHHHHHHHT--TCEEECSEEEEEEEEETT-TTE-EEEEEEETTTTEEEEEEESEEEEC
T ss_pred             -------------HH----HHHHHHHHHHHC--CCEEEeCCEEEEEEEecC-CCe-EEEEEEEcCCCCceEEECCEEEEC
Confidence                         00    012333444443  899999999999986210 233 556655     4568999999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      +|..+.
T Consensus       283 ~G~~p~  288 (478)
T 1v59_A          283 VGRRPY  288 (478)
T ss_dssp             SCEEEC
T ss_pred             CCCCcC
Confidence            997653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.88  E-value=1.9e-08  Score=76.01  Aligned_cols=98  Identities=13%  Similarity=0.238  Sum_probs=71.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.+...                                          
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  208 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG------------------------------------------  208 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc------------------------------------------
Confidence            58999999999999999999999999999987643100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cCcEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DGTIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g~~~~a~~vI~a~G  162 (184)
                           +        .  .--...+.+.+.+.  |++++.+++|+++...+   +. +.+.+.   +++++.+|.||.|+|
T Consensus       209 -----~--------~--~~~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~---~~-~~v~~~~~g~~~~~~~D~vv~a~G  267 (455)
T 1ebd_A          209 -----F--------E--KQMAAIIKKRLKKK--GVEVVTNALAKGAEERE---DG-VTVTYEANGETKTIDADYVLVTVG  267 (455)
T ss_dssp             -----S--------C--HHHHHHHHHHHHHT--TCEEEESEEEEEEEEET---TE-EEEEEEETTEEEEEEESEEEECSC
T ss_pred             -----c--------C--HHHHHHHHHHHHHC--CCEEEeCCEEEEEEEeC---Ce-EEEEEEeCCceeEEEcCEEEECcC
Confidence                 0        0  00012334444443  89999999999998764   33 555554   456799999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ..+.
T Consensus       268 ~~p~  271 (455)
T 1ebd_A          268 RRPN  271 (455)
T ss_dssp             EEES
T ss_pred             CCcc
Confidence            8653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.87  E-value=4.5e-08  Score=74.47  Aligned_cols=100  Identities=25%  Similarity=0.338  Sum_probs=74.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||..|+-+|..|++.|.+|+++|+.+.....     +.             ++                    
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~d-------------~~--------------------  227 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-----FD-------------EC--------------------  227 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----SC-------------HH--------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-----cC-------------HH--------------------
Confidence            47999999999999999999999999999987643110     00             00                    


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeEEEecCCcc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKFLIGCDGIH  164 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~vI~a~G~~  164 (184)
                                         -...+.+.+.+.  |++++.+++|+++...++ +.. +.|.+.+| +++.+|.||.|+|..
T Consensus       228 -------------------~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~-~~~-~~v~~~~G~~~i~~D~vv~a~G~~  284 (479)
T 2hqm_A          228 -------------------IQNTITDHYVKE--GINVHKLSKIVKVEKNVE-TDK-LKIHMNDSKSIDDVDELIWTIGRK  284 (479)
T ss_dssp             -------------------HHHHHHHHHHHH--TCEEECSCCEEEEEECC--CCC-EEEEETTSCEEEEESEEEECSCEE
T ss_pred             -------------------HHHHHHHHHHhC--CeEEEeCCEEEEEEEcCC-CcE-EEEEECCCcEEEEcCEEEECCCCC
Confidence                               012344445444  899999999999987541 123 67788888 789999999999976


Q ss_pred             hH
Q 030042          165 ST  166 (184)
Q Consensus       165 s~  166 (184)
                      +.
T Consensus       285 p~  286 (479)
T 2hqm_A          285 SH  286 (479)
T ss_dssp             EC
T ss_pred             Cc
Confidence            53

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.86  E-value=1.6e-08  Score=76.96  Aligned_cols=98  Identities=20%  Similarity=0.255  Sum_probs=72.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||..|+-+|..|++.|.+|+++|+.+.+...     +                                 +  
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-----~---------------------------------~--  225 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-----A---------------------------------D--  225 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----S---------------------------------C--
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-----c---------------------------------C--
Confidence            47999999999999999999999999999987643110     0                                 0  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec----CcEEEeeEEEecC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD----GTIVKTKFLIGCD  161 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~----g~~~~a~~vI~a~  161 (184)
                                   +.    -...+.+.|.+.  +++++++++|+++...+   +. +.+.+.+    |+++.+|.||.|+
T Consensus       226 -------------~~----~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~~~~~g~~~~~D~vv~a~  282 (482)
T 1ojt_A          226 -------------RD----LVKVWQKQNEYR--FDNIMVNTKTVAVEPKE---DG-VYVTFEGANAPKEPQRYDAVLVAA  282 (482)
T ss_dssp             -------------HH----HHHHHHHHHGGG--EEEEECSCEEEEEEEET---TE-EEEEEESSSCCSSCEEESCEEECC
T ss_pred             -------------HH----HHHHHHHHHHhc--CCEEEECCEEEEEEEcC---Ce-EEEEEeccCCCceEEEcCEEEECc
Confidence                         00    012334444443  89999999999998764   33 6677666    6778999999999


Q ss_pred             CcchH
Q 030042          162 GIHST  166 (184)
Q Consensus       162 G~~s~  166 (184)
                      |..+.
T Consensus       283 G~~p~  287 (482)
T 1ojt_A          283 GRAPN  287 (482)
T ss_dssp             CEEEC
T ss_pred             CCCcC
Confidence            97653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.86  E-value=3e-09  Score=78.75  Aligned_cols=40  Identities=30%  Similarity=0.450  Sum_probs=36.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ..+||+|||||++|+++|+.|++.|.+|+|+|+.+..++.
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~   67 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGN   67 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGG
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCc
Confidence            4689999999999999999999999999999998776543

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.85  E-value=3.5e-08  Score=74.88  Aligned_cols=107  Identities=21%  Similarity=0.352  Sum_probs=77.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      .+++|||+|.+|+-+|..|++. |.+|+++++.+......                                        
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~----------------------------------------  199 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGF----------------------------------------  199 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTT----------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccc----------------------------------------
Confidence            5899999999999999999999 99999999875431100                                        


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~  164 (184)
                                    ..  .--...+.+.+.+.  |++++.+++|+++...+   .. +.+.+.+|+++.+|.||.|+|..
T Consensus       200 --------------~~--~~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~---~~-v~v~~~~g~~i~aD~Vv~a~G~~  257 (472)
T 3iwa_A          200 --------------TS--KSLSQMLRHDLEKN--DVVVHTGEKVVRLEGEN---GK-VARVITDKRTLDADLVILAAGVS  257 (472)
T ss_dssp             --------------SC--HHHHHHHHHHHHHT--TCEEECSCCEEEEEESS---SB-EEEEEESSCEEECSEEEECSCEE
T ss_pred             --------------cC--HHHHHHHHHHHHhc--CCEEEeCCEEEEEEccC---Ce-EEEEEeCCCEEEcCEEEECCCCC
Confidence                          00  00012333444443  89999999999998754   33 66888889899999999999986


Q ss_pred             h--HHHhhhCCC
Q 030042          165 S--TVAWWLGLS  174 (184)
Q Consensus       165 s--~~~~~~~~~  174 (184)
                      +  .+.+.+|+.
T Consensus       258 p~~~l~~~~gl~  269 (472)
T 3iwa_A          258 PNTQLARDAGLE  269 (472)
T ss_dssp             ECCHHHHHHTCC
T ss_pred             cCHHHHHhCCcc
Confidence            4  355555554

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.85  E-value=3e-08  Score=75.66  Aligned_cols=99  Identities=15%  Similarity=0.172  Sum_probs=74.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC---CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            6 KDVVIIGAGIAGLATALALKRL---GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      .+++|||||+.|+-+|..|++.   |.+|+++|+.+.....     +                                 
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-----~---------------------------------  229 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-----F---------------------------------  229 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-----S---------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc-----c---------------------------------
Confidence            4799999999999999999998   9999999997643110     0                                 


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                      +               ..    -...+.+.+.+.  |++++++++|+++...+  +.. +.|.+.+|+++.+|.||.|+|
T Consensus       230 d---------------~~----~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~--~~~-~~v~~~~G~~i~~D~vv~a~G  285 (490)
T 1fec_A          230 D---------------SE----LRKQLTEQLRAN--GINVRTHENPAKVTKNA--DGT-RHVVFESGAEADYDVVMLAIG  285 (490)
T ss_dssp             C---------------HH----HHHHHHHHHHHT--TEEEEETCCEEEEEECT--TSC-EEEEETTSCEEEESEEEECSC
T ss_pred             C---------------HH----HHHHHHHHHHhC--CCEEEeCCEEEEEEEcC--CCE-EEEEECCCcEEEcCEEEEccC
Confidence            0               00    012344444444  89999999999998764  123 778888888899999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ..+.
T Consensus       286 ~~p~  289 (490)
T 1fec_A          286 RVPR  289 (490)
T ss_dssp             EEES
T ss_pred             CCcC
Confidence            8653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.84  E-value=3.4e-08  Score=75.47  Aligned_cols=98  Identities=17%  Similarity=0.273  Sum_probs=74.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|+.|+-+|..|++.|.+|+++|+.+.....     +.+                                  
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~d~----------------------------------  223 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-----EDA----------------------------------  223 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-----SSH----------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-----cCH----------------------------------
Confidence            47999999999999999999999999999987543110     000                                  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                    .    -...+.+.+.+.  |++++.+++|+++...+   +. +.+.+.+|+++.+|.||.|+|..+
T Consensus       224 --------------~----~~~~l~~~l~~~--GV~i~~~~~V~~i~~~~---~~-v~v~~~~g~~i~aD~Vv~a~G~~p  279 (499)
T 1xdi_A          224 --------------D----AALVLEESFAER--GVRLFKNARAASVTRTG---AG-VLVTMTDGRTVEGSHALMTIGSVP  279 (499)
T ss_dssp             --------------H----HHHHHHHHHHHT--TCEEETTCCEEEEEECS---SS-EEEEETTSCEEEESEEEECCCEEE
T ss_pred             --------------H----HHHHHHHHHHHC--CCEEEeCCEEEEEEEeC---CE-EEEEECCCcEEEcCEEEECCCCCc
Confidence                          0    012334444443  89999999999998764   34 777788888999999999999876


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       280 ~  280 (499)
T 1xdi_A          280 N  280 (499)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.84  E-value=3.7e-08  Score=75.21  Aligned_cols=99  Identities=14%  Similarity=0.190  Sum_probs=74.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC---CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            6 KDVVIIGAGIAGLATALALKRL---GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      .+++|||||..|+-+|..|++.   |.+|+++++.+.+...     +                                 
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-----~---------------------------------  233 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-----F---------------------------------  233 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT-----S---------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc-----c---------------------------------
Confidence            4799999999999999999998   9999999987543110     0                                 


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                      +               ..    -...+.+.+.+.  |++++++++|+++...+  +.. +.|.+.+|+++.+|.||.|+|
T Consensus       234 d---------------~~----~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~--~~~-~~v~~~~G~~i~~D~vv~a~G  289 (495)
T 2wpf_A          234 D---------------ET----IREEVTKQLTAN--GIEIMTNENPAKVSLNT--DGS-KHVTFESGKTLDVDVVMMAIG  289 (495)
T ss_dssp             C---------------HH----HHHHHHHHHHHT--TCEEEESCCEEEEEECT--TSC-EEEEETTSCEEEESEEEECSC
T ss_pred             C---------------HH----HHHHHHHHHHhC--CCEEEeCCEEEEEEEcC--Cce-EEEEECCCcEEEcCEEEECCC
Confidence            0               00    012344444444  89999999999998764  123 678888888999999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ..+.
T Consensus       290 ~~p~  293 (495)
T 2wpf_A          290 RIPR  293 (495)
T ss_dssp             EEEC
T ss_pred             Cccc
Confidence            8653

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.84  E-value=4.2e-09  Score=77.44  Aligned_cols=39  Identities=38%  Similarity=0.623  Sum_probs=35.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc-CCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS-DGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~-~~~~~   42 (184)
                      ..+||+|||||++||++|+.|++.|++|+|+|+. +..++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGG   82 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGG   82 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCC
Confidence            4679999999999999999999999999999998 76654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.84  E-value=4.8e-08  Score=74.70  Aligned_cols=99  Identities=22%  Similarity=0.357  Sum_probs=73.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.+...     +                                    
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~------------------------------------  215 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-----F------------------------------------  215 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-----S------------------------------------
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-----c------------------------------------
Confidence            47999999999999999999999999999987643110     0                                    


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcE-EEeeEEEecCCcc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI-VKTKFLIGCDGIH  164 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~-~~a~~vI~a~G~~  164 (184)
                                    +  .--...+.+.+.+.  |++++.+++|+++...++  .. +.+.+.+|++ +.+|.||.|+|..
T Consensus       216 --------------d--~~~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~~--~~-~~v~~~~g~~~~~~D~vi~a~G~~  274 (500)
T 1onf_A          216 --------------D--ESVINVLENDMKKN--NINIVTFADVVEIKKVSD--KN-LSIHLSDGRIYEHFDHVIYCVGRS  274 (500)
T ss_dssp             --------------C--HHHHHHHHHHHHHT--TCEEECSCCEEEEEESST--TC-EEEEETTSCEEEEESEEEECCCBC
T ss_pred             --------------c--hhhHHHHHHHHHhC--CCEEEECCEEEEEEEcCC--ce-EEEEECCCcEEEECCEEEECCCCC
Confidence                          0  00012344444444  899999999999987541  23 6778888887 9999999999976


Q ss_pred             hH
Q 030042          165 ST  166 (184)
Q Consensus       165 s~  166 (184)
                      ..
T Consensus       275 p~  276 (500)
T 1onf_A          275 PD  276 (500)
T ss_dssp             CT
T ss_pred             cC
Confidence            54

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.83  E-value=1.5e-08  Score=77.48  Aligned_cols=35  Identities=11%  Similarity=0.226  Sum_probs=31.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +.+|+|||||++|+.+|..|++.+.+|+|||+.+.
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            45799999999999999999999999999999753

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.82  E-value=5.1e-09  Score=79.75  Aligned_cols=41  Identities=37%  Similarity=0.504  Sum_probs=36.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCCCCCcc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRGTG   44 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~~~~~~   44 (184)
                      +.+||+|||||++|+++|+.|++.| .+|+|+|+.+..++..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~   49 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLS   49 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGG
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCee
Confidence            4689999999999999999999998 7999999998776543

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.82  E-value=4.7e-09  Score=77.66  Aligned_cols=40  Identities=25%  Similarity=0.513  Sum_probs=36.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      +++||+|||||++|+++|+.|++.|.+|+|+|+++..++.
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~   41 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN   41 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCc
Confidence            4589999999999999999999999999999998876543

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.82  E-value=5.3e-08  Score=72.62  Aligned_cols=103  Identities=20%  Similarity=0.311  Sum_probs=74.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++|+.+.+....                                         
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  184 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA-----------------------------------------  184 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT-----------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccc-----------------------------------------
Confidence            589999999999999999999999999999976431100                                         


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ..+.    -...+.+.+.+.  |++++.+++|+++.  +  +    .|.+.+|+++.+|.||.|+|...
T Consensus       185 -----------~~~~----~~~~l~~~l~~~--GV~i~~~~~v~~i~--~--~----~v~~~~g~~i~~D~vi~a~G~~p  239 (408)
T 2gqw_A          185 -----------APAT----LADFVARYHAAQ--GVDLRFERSVTGSV--D--G----VVLLDDGTRIAADMVVVGIGVLA  239 (408)
T ss_dssp             -----------SCHH----HHHHHHHHHHHT--TCEEEESCCEEEEE--T--T----EEEETTSCEEECSEEEECSCEEE
T ss_pred             -----------cCHH----HHHHHHHHHHHc--CcEEEeCCEEEEEE--C--C----EEEECCCCEEEcCEEEECcCCCc
Confidence                       0000    012334444443  89999999999998  3  2    35667888999999999999764


Q ss_pred             --HHHhhhCCC
Q 030042          166 --TVAWWLGLS  174 (184)
Q Consensus       166 --~~~~~~~~~  174 (184)
                        .+.+.+++.
T Consensus       240 ~~~l~~~~gl~  250 (408)
T 2gqw_A          240 NDALARAAGLA  250 (408)
T ss_dssp             CCHHHHHHTCC
T ss_pred             cHHHHHhCCCC
Confidence              355555543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.81  E-value=1.6e-07  Score=72.75  Aligned_cols=109  Identities=20%  Similarity=0.349  Sum_probs=76.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++++.+.....     +                                 +  
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~---------------------------------~--  191 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-----V---------------------------------D--  191 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-----S---------------------------------C--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-----c---------------------------------C--
Confidence            37999999999999999999999999999987542110     0                                 0  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCC----------------CCCcceEEEEecC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTH----------------DGSSPVFIHLVDG  149 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~----------------~~~~~~~v~~~~g  149 (184)
                                   ..    -...+.+.+.+.  +++++++++++++.....                .+.. +.+.+.+|
T Consensus       192 -------------~~----~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g  251 (565)
T 3ntd_A          192 -------------RE----MAGFAHQAIRDQ--GVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGH-LSLTLSNG  251 (565)
T ss_dssp             -------------HH----HHHHHHHHHHHT--TCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCE-EEEEETTS
T ss_pred             -------------HH----HHHHHHHHHHHC--CCEEEeCCeEEEEeccccccccccccccccccccCCCc-EEEEEcCC
Confidence                         00    012333444443  899999999999986300                0133 66777888


Q ss_pred             cEEEeeEEEecCCcch--HHHhhhCCC
Q 030042          150 TIVKTKFLIGCDGIHS--TVAWWLGLS  174 (184)
Q Consensus       150 ~~~~a~~vI~a~G~~s--~~~~~~~~~  174 (184)
                      +++.+|.||.|+|..+  .+.+.+++.
T Consensus       252 ~~i~~D~vi~a~G~~p~~~l~~~~g~~  278 (565)
T 3ntd_A          252 ELLETDLLIMAIGVRPETQLARDAGLA  278 (565)
T ss_dssp             CEEEESEEEECSCEEECCHHHHHHTCC
T ss_pred             CEEEcCEEEECcCCccchHHHHhCCcc
Confidence            8999999999999865  344555543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.79  E-value=6.8e-08  Score=73.26  Aligned_cols=98  Identities=26%  Similarity=0.323  Sum_probs=70.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++|+.+.....     +                                 +  
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~---------------------------------d--  214 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-----L---------------------------------D--  214 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----S---------------------------------C--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-----C---------------------------------C--
Confidence            47999999999999999999999999999987643110     0                                 0  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHH-HhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe--cC--cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTL-ADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV--DG--TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~--~g--~~~~a~~vI~a  160 (184)
                                   ..    -...+.+.+ .+.  +++++++++|+++...+   +. +.+.+.  +|  +++.+|.||.|
T Consensus       215 -------------~~----~~~~l~~~l~~~~--gv~i~~~~~v~~i~~~~---~~-~~v~~~~~~g~~~~i~~D~vv~a  271 (468)
T 2qae_A          215 -------------ED----VTNALVGALAKNE--KMKFMTSTKVVGGTNNG---DS-VSLEVEGKNGKRETVTCEALLVS  271 (468)
T ss_dssp             -------------HH----HHHHHHHHHHHHT--CCEEECSCEEEEEEECS---SS-EEEEEECC---EEEEEESEEEEC
T ss_pred             -------------HH----HHHHHHHHHhhcC--CcEEEeCCEEEEEEEcC---Ce-EEEEEEcCCCceEEEECCEEEEC
Confidence                         00    012344444 333  89999999999998764   33 556655  66  57999999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      +|..+.
T Consensus       272 ~G~~p~  277 (468)
T 2qae_A          272 VGRRPF  277 (468)
T ss_dssp             SCEEEC
T ss_pred             CCcccC
Confidence            998653

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.78  E-value=7.5e-09  Score=76.15  Aligned_cols=39  Identities=36%  Similarity=0.577  Sum_probs=35.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++|++|||||++|+++|+.|++.|.+|+|+|+.+..++.
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~   39 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcc
Confidence            369999999999999999999999999999998877654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.78  E-value=9.6e-08  Score=72.35  Aligned_cols=97  Identities=23%  Similarity=0.298  Sum_probs=71.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++|+.+.+...     +.             +                     
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~~-------------~---------------------  212 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-----ED-------------A---------------------  212 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----SC-------------H---------------------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-----cC-------------H---------------------
Confidence            47999999999999999999999999999987543110     00             0                     


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe-cC--cEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV-DG--TIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-~g--~~~~a~~vI~a~G  162 (184)
                                    .    -...+.+.+.+.  |++++.+++|+++...+   +. +.+.+. +|  +++.+|.||.|+|
T Consensus       213 --------------~----~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~---~~-~~v~~~~~g~~~~~~~D~vv~a~G  268 (464)
T 2a8x_A          213 --------------D----VSKEIEKQFKKL--GVTILTATKVESIADGG---SQ-VTVTVTKDGVAQELKAEKVLQAIG  268 (464)
T ss_dssp             --------------H----HHHHHHHHHHHH--TCEEECSCEEEEEEECS---SC-EEEEEESSSCEEEEEESEEEECSC
T ss_pred             --------------H----HHHHHHHHHHHc--CCEEEeCcEEEEEEEcC---Ce-EEEEEEcCCceEEEEcCEEEECCC
Confidence                          0    012344444444  89999999999998764   33 556654 56  5799999999999


Q ss_pred             cch
Q 030042          163 IHS  165 (184)
Q Consensus       163 ~~s  165 (184)
                      ..+
T Consensus       269 ~~p  271 (464)
T 2a8x_A          269 FAP  271 (464)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            765

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.78  E-value=5e-08  Score=75.01  Aligned_cols=108  Identities=19%  Similarity=0.276  Sum_probs=77.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||..|+-+|..|++.|.+|+++|+.+.....                                          
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------------------------------  252 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI------------------------------------------  252 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc------------------------------------------
Confidence            57999999999999999999999999999987643100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcc--eEEEEecCc-EEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSP--VFIHLVDGT-IVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~--~~v~~~~g~-~~~a~~vI~a~G  162 (184)
                           +.      ..    -...+.+.+.+.  |++++++++|+++...++  ...  +.|.+.+|+ ++.+|.||.|+|
T Consensus       253 -----~~------~~----~~~~l~~~l~~~--GV~i~~~~~V~~i~~~~~--~~v~~~~v~~~~G~~~i~aD~Vv~A~G  313 (523)
T 1mo9_A          253 -----KD------NE----TRAYVLDRMKEQ--GMEIISGSNVTRIEEDAN--GRVQAVVAMTPNGEMRIETDFVFLGLG  313 (523)
T ss_dssp             -----CS------HH----HHHHHHHHHHHT--TCEEESSCEEEEEEECTT--SBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             -----cc------HH----HHHHHHHHHHhC--CcEEEECCEEEEEEEcCC--CceEEEEEEECCCcEEEEcCEEEECcC
Confidence                 00      00    012344444444  899999999999987541  211  457777887 899999999999


Q ss_pred             cchH---HHhhhCCC
Q 030042          163 IHST---VAWWLGLS  174 (184)
Q Consensus       163 ~~s~---~~~~~~~~  174 (184)
                      ..+.   +.+.+++.
T Consensus       314 ~~p~~~~~l~~~gl~  328 (523)
T 1mo9_A          314 EQPRSAELAKILGLD  328 (523)
T ss_dssp             CEECCHHHHHHHTCC
T ss_pred             CccCCccCHHHcCCc
Confidence            8663   34555543

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.77  E-value=7e-08  Score=73.31  Aligned_cols=99  Identities=18%  Similarity=0.378  Sum_probs=70.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.+....                                         
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  217 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVG-----------------------------------------  217 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSS-----------------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcc-----------------------------------------
Confidence            479999999999999999999999999999876431100                                         


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE-----ecCcEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL-----VDGTIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~-----~~g~~~~a~~vI~a  160 (184)
                           +.      ..    -...+.+.+.+.  |++++++++|+++...++  .. +.+..     .+++++.+|.||.|
T Consensus       218 -----~~------~~----~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~--~~-~~v~~~~~~~~~~~~i~~D~vv~a  277 (474)
T 1zmd_A          218 -----ID------ME----ISKNFQRILQKQ--GFKFKLNTKVTGATKKSD--GK-IDVSIEAASGGKAEVITCDVLLVC  277 (474)
T ss_dssp             -----CC------HH----HHHHHHHHHHHT--TCEEECSEEEEEEEECTT--SC-EEEEEEETTSCCCEEEEESEEEEC
T ss_pred             -----cC------HH----HHHHHHHHHHHC--CCEEEeCceEEEEEEcCC--ce-EEEEEEecCCCCceEEEcCEEEEC
Confidence                 00      00    012333444443  899999999999987651  21 44443     45678999999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|..+
T Consensus       278 ~G~~p  282 (474)
T 1zmd_A          278 IGRRP  282 (474)
T ss_dssp             SCEEE
T ss_pred             cCCCc
Confidence            99765

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.77  E-value=8e-08  Score=72.55  Aligned_cols=97  Identities=16%  Similarity=0.203  Sum_probs=71.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+......                                         
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  186 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKY-----------------------------------------  186 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT-----------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccccc-----------------------------------------
Confidence            479999999999999999999999999999876431100                                         


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                   .+  .--...+.+.+.+.  |++++.+++|+++...+   .. +.|.+.++ ++.+|.||.|+|...
T Consensus       187 -------------~d--~~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~---~~-v~v~~~~g-~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          187 -------------FD--KEMVAEVQKSLEKQ--AVIFHFEETVLGIEETA---NG-IVLETSEQ-EISCDSGIFALNLHP  244 (452)
T ss_dssp             -------------CC--HHHHHHHHHHHHTT--TEEEEETCCEEEEEECS---SC-EEEEESSC-EEEESEEEECSCCBC
T ss_pred             -------------CC--HHHHHHHHHHHHHc--CCEEEeCCEEEEEEccC---Ce-EEEEECCC-EEEeCEEEECcCCCC
Confidence                         00  00012333444433  89999999999998654   33 67777777 899999999999764

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.77  E-value=1e-07  Score=73.40  Aligned_cols=97  Identities=15%  Similarity=0.139  Sum_probs=73.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..+++.|.+|+|+++.......                                          
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~------------------------------------------  261 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGF------------------------------------------  261 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTS------------------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccccc------------------------------------------
Confidence            47999999999999999999999999999874321000                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                    +.  --...+.+.|.+.  +++++.++.+.++...+   +. +.|.+.++.++.+|.|++|+|...
T Consensus       262 --------------D~--ei~~~l~~~l~~~--gi~~~~~~~v~~~~~~~---~~-~~v~~~~~~~~~~D~vLvAvGR~P  319 (542)
T 4b1b_A          262 --------------DQ--QCAVKVKLYMEEQ--GVMFKNGILPKKLTKMD---DK-ILVEFSDKTSELYDTVLYAIGRKG  319 (542)
T ss_dssp             --------------CH--HHHHHHHHHHHHT--TCEEEETCCEEEEEEET---TE-EEEEETTSCEEEESEEEECSCEEE
T ss_pred             --------------ch--hHHHHHHHHHHhh--cceeecceEEEEEEecC---Ce-EEEEEcCCCeEEEEEEEEcccccC
Confidence                          00  0012344444444  89999999999998876   44 788888888899999999999865


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       320 n  320 (542)
T 4b1b_A          320 D  320 (542)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.76  E-value=8.2e-08  Score=73.24  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=69.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++|+.+.+....                                         
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  233 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGY-----------------------------------------  233 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhH-----------------------------------------
Confidence            579999999999999999999999999999876431100                                         


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ....    -...+.+.+.+.  |++++.+++|+++..++   .. ..+.+ +|+++.+|.||.|+|...
T Consensus       234 -----------~~~~----~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~---~v-~~v~~-~g~~i~~D~Vi~a~G~~p  291 (490)
T 2bc0_A          234 -----------YDRD----LTDLMAKNMEEH--GIQLAFGETVKEVAGNG---KV-EKIIT-DKNEYDVDMVILAVGFRP  291 (490)
T ss_dssp             -----------SCHH----HHHHHHHHHHTT--TCEEEETCCEEEEECSS---SC-CEEEE-SSCEEECSEEEECCCEEE
T ss_pred             -----------HHHH----HHHHHHHHHHhC--CeEEEeCCEEEEEEcCC---cE-EEEEE-CCcEEECCEEEECCCCCc
Confidence                       0000    012333444443  89999999999998632   22 33555 677899999999999755

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.75  E-value=1.3e-08  Score=76.38  Aligned_cols=43  Identities=19%  Similarity=0.328  Sum_probs=38.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccce
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA   46 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~   46 (184)
                      .++||+|||+|++|+++|+.|++.|.+|+|+|+++..++...+
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s   47 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS   47 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccc
Confidence            4689999999999999999999999999999999877665433

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.74  E-value=5.7e-08  Score=73.69  Aligned_cols=98  Identities=24%  Similarity=0.404  Sum_probs=71.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.....     +             .+                     
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----~-------------~~---------------------  218 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-----M-------------DA---------------------  218 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----S-------------CH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-----c-------------cH---------------------
Confidence            57999999999999999999999999999987643110     0             00                     


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a  160 (184)
                                    .    -...+.+.+.+.  +++++.+++|+++...+   +. +.+.+.   +|  +++.+|.||.|
T Consensus       219 --------------~----~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~~~~D~vv~a  274 (470)
T 1dxl_A          219 --------------E----IRKQFQRSLEKQ--GMKFKLKTKVVGVDTSG---DG-VKLTVEPSAGGEQTIIEADVVLVS  274 (470)
T ss_dssp             --------------H----HHHHHHHHHHHS--SCCEECSEEEEEEECSS---SS-EEEEEEESSSCCCEEEEESEEECC
T ss_pred             --------------H----HHHHHHHHHHHc--CCEEEeCCEEEEEEEcC---Ce-EEEEEEecCCCcceEEECCEEEEC
Confidence                          0    012334444443  89999999999998764   33 555554   44  67999999999


Q ss_pred             CCcchH
Q 030042          161 DGIHST  166 (184)
Q Consensus       161 ~G~~s~  166 (184)
                      +|..+.
T Consensus       275 ~G~~p~  280 (470)
T 1dxl_A          275 AGRTPF  280 (470)
T ss_dssp             CCEEEC
T ss_pred             CCCCcC
Confidence            998653

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.74  E-value=4.1e-08  Score=74.28  Aligned_cols=96  Identities=16%  Similarity=0.307  Sum_probs=70.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.+...     +.             +                     
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~-------------~---------------------  212 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-----YD-------------S---------------------  212 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----SC-------------H---------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-----cC-------------H---------------------
Confidence            47999999999999999999999999999997653110     00             0                     


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGI  163 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~  163 (184)
                                        --...+.+.+.+.  +++++.+++|+++.. +   .  +.+.+.+|  +++.+|.||.|+|.
T Consensus       213 ------------------~~~~~l~~~l~~~--gv~i~~~~~v~~i~~-~---~--v~v~~~~G~~~~i~~D~vv~a~G~  266 (458)
T 1lvl_A          213 ------------------ELTAPVAESLKKL--GIALHLGHSVEGYEN-G---C--LLANDGKGGQLRLEADRVLVAVGR  266 (458)
T ss_dssp             ------------------HHHHHHHHHHHHH--TCEEETTCEEEEEET-T---E--EEEECSSSCCCEECCSCEEECCCE
T ss_pred             ------------------HHHHHHHHHHHHC--CCEEEECCEEEEEEe-C---C--EEEEECCCceEEEECCEEEECcCC
Confidence                              0012334444444  899999999999986 4   2  44554456  68999999999997


Q ss_pred             chH
Q 030042          164 HST  166 (184)
Q Consensus       164 ~s~  166 (184)
                      .+.
T Consensus       267 ~p~  269 (458)
T 1lvl_A          267 RPR  269 (458)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.74  E-value=1.6e-07  Score=71.74  Aligned_cols=95  Identities=19%  Similarity=0.309  Sum_probs=69.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  212 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL------------------------------------------  212 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc------------------------------------------
Confidence            47999999999999999999999999999987653110                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEe--cC--cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLV--DG--TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~--~g--~~~~a~~vI~a  160 (184)
                                        . ..++.+.+.+.++ +++++.++++++++..+   +. +.+.+.  +|  +++.+|.||.|
T Consensus       213 ------------------~-d~~~~~~l~~~l~~~V~i~~~~~v~~i~~~~---~~-v~v~~~~~~G~~~~i~~D~Vi~a  269 (492)
T 3ic9_A          213 ------------------Q-DEEMKRYAEKTFNEEFYFDAKARVISTIEKE---DA-VEVIYFDKSGQKTTESFQYVLAA  269 (492)
T ss_dssp             ------------------C-CHHHHHHHHHHHHTTSEEETTCEEEEEEECS---SS-EEEEEECTTCCEEEEEESEEEEC
T ss_pred             ------------------C-CHHHHHHHHHHHhhCcEEEECCEEEEEEEcC---CE-EEEEEEeCCCceEEEECCEEEEe
Confidence                              0 0122222222221 38899999999998765   33 666664  67  68999999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       270 ~G~~p  274 (492)
T 3ic9_A          270 TGRKA  274 (492)
T ss_dssp             SCCEE
T ss_pred             eCCcc
Confidence            99865

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.74  E-value=1.2e-07  Score=71.52  Aligned_cols=98  Identities=20%  Similarity=0.275  Sum_probs=70.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++|+.+.+....                                         
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  188 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKY-----------------------------------------  188 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTT-----------------------------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhh-----------------------------------------
Confidence            479999999999999999999999999999875431100                                         


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceE-EEEecCcEEEeeEEEecCCcc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVF-IHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~-v~~~~g~~~~a~~vI~a~G~~  164 (184)
                                 ....    -...+.+.+.+.  |++++.+++|+++...+   .. +. +.+ +|+++.+|.||.|+|..
T Consensus       189 -----------~~~~----~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~---~~-v~~v~~-~g~~i~~D~vv~a~G~~  246 (452)
T 2cdu_A          189 -----------FDKE----FTDILAKDYEAH--GVNLVLGSKVAAFEEVD---DE-IITKTL-DGKEIKSDIAILCIGFR  246 (452)
T ss_dssp             -----------SCHH----HHHHHHHHHHHT--TCEEEESSCEEEEEEET---TE-EEEEET-TSCEEEESEEEECCCEE
T ss_pred             -----------hhhh----HHHHHHHHHHHC--CCEEEcCCeeEEEEcCC---Ce-EEEEEe-CCCEEECCEEEECcCCC
Confidence                       0000    012334444444  89999999999998643   22 33 444 77889999999999976


Q ss_pred             hH
Q 030042          165 ST  166 (184)
Q Consensus       165 s~  166 (184)
                      ..
T Consensus       247 p~  248 (452)
T 2cdu_A          247 PN  248 (452)
T ss_dssp             EC
T ss_pred             CC
Confidence            53

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.74  E-value=8.6e-08  Score=70.50  Aligned_cols=100  Identities=19%  Similarity=0.263  Sum_probs=72.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.+..      +.+                                  
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~~~----------------------------------  183 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG------LDE----------------------------------  183 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT------CCH----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc------CCH----------------------------------
Confidence            5799999999999999999999999999998764310      000                                  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                    .    -...+.+.+.+.  |++++.+++|+++..        ..+.+.+|+ +.+|.||.|+|..+
T Consensus       184 --------------~----~~~~l~~~l~~~--gV~i~~~~~v~~i~~--------~~v~~~~g~-i~~D~vi~a~G~~p  234 (367)
T 1xhc_A          184 --------------E----LSNMIKDMLEET--GVKFFLNSELLEANE--------EGVLTNSGF-IEGKVKICAIGIVP  234 (367)
T ss_dssp             --------------H----HHHHHHHHHHHT--TEEEECSCCEEEECS--------SEEEETTEE-EECSCEEEECCEEE
T ss_pred             --------------H----HHHHHHHHHHHC--CCEEEcCCEEEEEEe--------eEEEECCCE-EEcCEEEECcCCCc
Confidence                          0    012334444444  899999999999872        225566777 99999999999755


Q ss_pred             H--HHhhhCCC
Q 030042          166 T--VAWWLGLS  174 (184)
Q Consensus       166 ~--~~~~~~~~  174 (184)
                      .  +.+.+++.
T Consensus       235 ~~~ll~~~gl~  245 (367)
T 1xhc_A          235 NVDLARRSGIH  245 (367)
T ss_dssp             CCHHHHHTTCC
T ss_pred             CHHHHHhCCCC
Confidence            3  45555543

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.71  E-value=1.1e-07  Score=72.54  Aligned_cols=107  Identities=25%  Similarity=0.320  Sum_probs=74.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHh----CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            6 KDVVIIGAGIAGLATALALKR----LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      .+++|||||++|+-+|..|++    .|.+|+++++.+.+....                                     
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~-------------------------------------  223 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI-------------------------------------  223 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT-------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccccc-------------------------------------
Confidence            479999999999999999976    478899998764320000                                     


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                                     .  .  .--...+.+.+.+.  |++++.+++|+++...+   .. +.|.+.+|+++.+|.||.|+
T Consensus       224 ---------------l--~--~~~~~~~~~~l~~~--GV~v~~~~~V~~i~~~~---~~-~~v~l~dG~~i~aD~Vv~a~  278 (493)
T 1m6i_A          224 ---------------L--P--EYLSNWTMEKVRRE--GVKVMPNAIVQSVGVSS---GK-LLIKLKDGRKVETDHIVAAV  278 (493)
T ss_dssp             ---------------S--C--HHHHHHHHHHHHTT--TCEEECSCCEEEEEEET---TE-EEEEETTSCEEEESEEEECC
T ss_pred             ---------------C--C--HHHHHHHHHHHHhc--CCEEEeCCEEEEEEecC---Ce-EEEEECCCCEEECCEEEECC
Confidence                           0  0  00012233344333  89999999999998654   33 67888899999999999999


Q ss_pred             CcchH--HHhhhCCC
Q 030042          162 GIHST--VAWWLGLS  174 (184)
Q Consensus       162 G~~s~--~~~~~~~~  174 (184)
                      |..+.  +.+.+++.
T Consensus       279 G~~pn~~l~~~~gl~  293 (493)
T 1m6i_A          279 GLEPNVELAKTGGLE  293 (493)
T ss_dssp             CEEECCTTHHHHTCC
T ss_pred             CCCccHHHHHHcCCc
Confidence            97653  55556654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.71  E-value=2.9e-07  Score=71.71  Aligned_cols=104  Identities=18%  Similarity=0.355  Sum_probs=75.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  225 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP------------------------------------------  225 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc------------------------------------------
Confidence            47999999999999999999999999999986542110                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                   ...  --...+.+.+.+.  |++++.+++|+++...+   .   .|.+.+|+++.+|.||.|+|..+
T Consensus       226 -------------~~~--~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~---~---~v~~~~g~~i~~D~Vi~a~G~~p  282 (588)
T 3ics_A          226 -------------IDY--EMAAYVHEHMKNH--DVELVFEDGVDALEENG---A---VVRLKSGSVIQTDMLILAIGVQP  282 (588)
T ss_dssp             -------------SCH--HHHHHHHHHHHHT--TCEEECSCCEEEEEGGG---T---EEEETTSCEEECSEEEECSCEEE
T ss_pred             -------------CCH--HHHHHHHHHHHHc--CCEEEECCeEEEEecCC---C---EEEECCCCEEEcCEEEEccCCCC
Confidence                         000  0012344444444  89999999999998764   2   36667888999999999999765


Q ss_pred             --HHHhhhCCC
Q 030042          166 --TVAWWLGLS  174 (184)
Q Consensus       166 --~~~~~~~~~  174 (184)
                        .+.+.+++.
T Consensus       283 ~~~~l~~~g~~  293 (588)
T 3ics_A          283 ESSLAKGAGLA  293 (588)
T ss_dssp             CCHHHHHTTCC
T ss_pred             ChHHHHhcCce
Confidence              244555543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.70  E-value=1.1e-07  Score=72.11  Aligned_cols=96  Identities=14%  Similarity=0.189  Sum_probs=71.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++++.+.....      .                                   
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------~-----------------------------------  215 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFRE------D-----------------------------------  215 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTS------C-----------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCCC------C-----------------------------------
Confidence            47999999999999999999999999999986542100      0                                   


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                   +    --...+.+.+.+.  |++++.+++|+++...+   .. +.+.+. +.++.+|.||.|+|..+
T Consensus       216 -------------~----~~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~---~~-~~v~~~-~~~i~aD~Vv~a~G~~p  271 (467)
T 1zk7_A          216 -------------P----AIGEAVTAAFRAE--GIEVLEHTQASQVAHMD---GE-FVLTTT-HGELRADKLLVATGRTP  271 (467)
T ss_dssp             -------------H----HHHHHHHHHHHHT--TCEEETTCCEEEEEEET---TE-EEEEET-TEEEEESEEEECSCEEE
T ss_pred             -------------H----HHHHHHHHHHHhC--CCEEEcCCEEEEEEEeC---CE-EEEEEC-CcEEEcCEEEECCCCCc
Confidence                         0    0012344444444  89999999999998754   33 566665 45799999999999876


Q ss_pred             H
Q 030042          166 T  166 (184)
Q Consensus       166 ~  166 (184)
                      .
T Consensus       272 ~  272 (467)
T 1zk7_A          272 N  272 (467)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.69  E-value=1.7e-07  Score=71.05  Aligned_cols=98  Identities=13%  Similarity=0.206  Sum_probs=72.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~------------------------------------------  208 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR------------------------------------------  208 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------------------------------
Confidence            47999999999999999999999999999987542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEE-EecCcEEEeeEEEecCCcc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIH-LVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~-~~~g~~~~a~~vI~a~G~~  164 (184)
                                 .  +.  --...+.+.+.+.  |++++.+++|+++...++  .. +.|. +.+|+ +.+|.||.|+|..
T Consensus       209 -----------~--~~--~~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~--~~-~~v~~~~~g~-i~aD~Vv~a~G~~  267 (463)
T 4dna_A          209 -----------F--DQ--DMRRGLHAAMEEK--GIRILCEDIIQSVSADAD--GR-RVATTMKHGE-IVADQVMLALGRM  267 (463)
T ss_dssp             -----------S--CH--HHHHHHHHHHHHT--TCEEECSCCEEEEEECTT--SC-EEEEESSSCE-EEESEEEECSCEE
T ss_pred             -----------c--CH--HHHHHHHHHHHHC--CCEEECCCEEEEEEEcCC--CE-EEEEEcCCCe-EEeCEEEEeeCcc
Confidence                       0  00  0012344444444  899999999999987642  22 6777 88887 9999999999986


Q ss_pred             hH
Q 030042          165 ST  166 (184)
Q Consensus       165 s~  166 (184)
                      +.
T Consensus       268 p~  269 (463)
T 4dna_A          268 PN  269 (463)
T ss_dssp             ES
T ss_pred             cC
Confidence            53

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.69  E-value=1.8e-07  Score=70.35  Aligned_cols=101  Identities=20%  Similarity=0.322  Sum_probs=74.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..+++.|.+|+++|+.+.....                                          
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~------------------------------------------  185 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL------------------------------------------  185 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT------------------------------------------
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc------------------------------------------
Confidence            47999999999999999999999999999987643111                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                 ....    ....+.+.+.+.  +++++.+++|++++..        .+.+.+|+++.+|.|+.|+|...
T Consensus       186 -----------~d~~----~~~~~~~~l~~~--gV~i~~~~~v~~~~~~--------~v~~~~g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          186 -----------MDAD----MNQPILDELDKR--EIPYRLNEEINAINGN--------EITFKSGKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             -----------SCGG----GGHHHHHHHHHT--TCCEEESCCEEEEETT--------EEEETTSCEEECSEEEECCCEEE
T ss_pred             -----------ccch----hHHHHHHHhhcc--ceEEEeccEEEEecCC--------eeeecCCeEEeeeeEEEEeceec
Confidence                       0000    023455555555  8999999999887532        36678899999999999999754


Q ss_pred             --HHHhhhCC
Q 030042          166 --TVAWWLGL  173 (184)
Q Consensus       166 --~~~~~~~~  173 (184)
                        .+.+..++
T Consensus       241 n~~~~~~~gl  250 (437)
T 4eqs_A          241 NSKFIESSNI  250 (437)
T ss_dssp             SCGGGTTSSC
T ss_pred             CcHHHHhhhh
Confidence              33444444

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.69  E-value=2.1e-07  Score=66.86  Aligned_cols=96  Identities=21%  Similarity=0.323  Sum_probs=68.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++.+.....                    +                     
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------------------~---------------------  184 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE--------------------K---------------------  184 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCC--------------------H---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccC--------------------H---------------------
Confidence            47999999999999999999999999999986532100                    0                     


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec----C--cEEEeeEEEe
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD----G--TIVKTKFLIG  159 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~----g--~~~~a~~vI~  159 (184)
                                        .-...+.+.+.+.  +++++++++++++..++  +.. ..|.+.+    |  +++.+|.||.
T Consensus       185 ------------------~~~~~l~~~l~~~--gv~i~~~~~v~~i~~~~--~~v-~~v~~~~~~~~g~~~~i~~D~vv~  241 (320)
T 1trb_A          185 ------------------ILIKRLMDKVENG--NIILHTNRTLEEVTGDQ--MGV-TGVRLRDTQNSDNIESLDVAGLFV  241 (320)
T ss_dssp             ------------------HHHHHHHHHHHTS--SEEEECSCEEEEEEECS--SSE-EEEEEECCTTCCCCEEEECSEEEE
T ss_pred             ------------------HHHHHHHHhcccC--CeEEEcCceeEEEEcCC--Cce-EEEEEEeccCCCceEEEEcCEEEE
Confidence                              0012333344333  89999999999998764  222 3355543    4  5799999999


Q ss_pred             cCCcch
Q 030042          160 CDGIHS  165 (184)
Q Consensus       160 a~G~~s  165 (184)
                      |+|...
T Consensus       242 a~G~~p  247 (320)
T 1trb_A          242 AIGHSP  247 (320)
T ss_dssp             CSCEEE
T ss_pred             EeCCCC
Confidence            999754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.69  E-value=8.1e-08  Score=73.10  Aligned_cols=97  Identities=18%  Similarity=0.268  Sum_probs=69.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ..+++|||||++|+-+|..|++.|.+|+++|+.+.....     +                                 + 
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~---------------------------------~-  226 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-----Y---------------------------------D-  226 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-----S---------------------------------C-
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-----C---------------------------------C-
Confidence            358999999999999999999999999999987542110     0                                 0 


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~  164 (184)
                                    ..    -...+.+.+.+.  |++++++++|+++..++   .. ..+.+. +.++.+|.||.|+|..
T Consensus       227 --------------~~----~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~---~v-~~v~~~-~~~i~~D~vi~a~G~~  281 (480)
T 3cgb_A          227 --------------GD----MAEYIYKEADKH--HIEILTNENVKAFKGNE---RV-EAVETD-KGTYKADLVLVSVGVK  281 (480)
T ss_dssp             --------------HH----HHHHHHHHHHHT--TCEEECSCCEEEEEESS---BE-EEEEET-TEEEECSEEEECSCEE
T ss_pred             --------------HH----HHHHHHHHHHHc--CcEEEcCCEEEEEEcCC---cE-EEEEEC-CCEEEcCEEEECcCCC
Confidence                          00    012333444433  89999999999998643   22 345554 4579999999999986


Q ss_pred             h
Q 030042          165 S  165 (184)
Q Consensus       165 s  165 (184)
                      +
T Consensus       282 p  282 (480)
T 3cgb_A          282 P  282 (480)
T ss_dssp             E
T ss_pred             c
Confidence            5

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.68  E-value=3.1e-07  Score=69.75  Aligned_cols=98  Identities=23%  Similarity=0.279  Sum_probs=71.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  218 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA------------------------------------------  218 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------------------------------
Confidence            47999999999999999999999999999987542110                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC---cEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG---TIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g---~~~~a~~vI~a~G  162 (184)
                                 .  .  .--...+.+.+.+.  +++++.+++|+++...+   +. +.+...++   +.+.+|.||.|+|
T Consensus       219 -----------~--~--~~~~~~l~~~l~~~--Gv~v~~~~~v~~i~~~~---~~-~~v~~~~~~g~~~~~~D~vi~a~G  277 (476)
T 3lad_A          219 -----------V--D--EQVAKEAQKILTKQ--GLKILLGARVTGTEVKN---KQ-VTVKFVDAEGEKSQAFDKLIVAVG  277 (476)
T ss_dssp             -----------S--C--HHHHHHHHHHHHHT--TEEEEETCEEEEEEECS---SC-EEEEEESSSEEEEEEESEEEECSC
T ss_pred             -----------c--C--HHHHHHHHHHHHhC--CCEEEECCEEEEEEEcC---CE-EEEEEEeCCCcEEEECCEEEEeeC
Confidence                       0  0  00012344444444  89999999999998765   33 56666544   5799999999999


Q ss_pred             cchH
Q 030042          163 IHST  166 (184)
Q Consensus       163 ~~s~  166 (184)
                      ....
T Consensus       278 ~~p~  281 (476)
T 3lad_A          278 RRPV  281 (476)
T ss_dssp             EEEC
T ss_pred             Cccc
Confidence            7653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.68  E-value=2e-07  Score=71.16  Aligned_cols=97  Identities=19%  Similarity=0.306  Sum_probs=70.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++++.+.....     +                                    
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~------------------------------------  237 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-----M------------------------------------  237 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-----S------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-----C------------------------------------
Confidence            47999999999999999999999999999987543110     0                                    


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec---C--cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---G--TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g--~~~~a~~vI~a  160 (184)
                                    .  .--...+.+.+.+.  +++++.+++|+++...+   +. +.+.+.+   |  +++.+|.||.|
T Consensus       238 --------------d--~~~~~~l~~~l~~~--gV~v~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~i~~D~Vi~a  295 (491)
T 3urh_A          238 --------------D--GEVAKQLQRMLTKQ--GIDFKLGAKVTGAVKSG---DG-AKVTFEPVKGGEATTLDAEVVLIA  295 (491)
T ss_dssp             --------------C--HHHHHHHHHHHHHT--TCEEECSEEEEEEEEET---TE-EEEEEEETTSCCCEEEEESEEEEC
T ss_pred             --------------C--HHHHHHHHHHHHhC--CCEEEECCeEEEEEEeC---CE-EEEEEEecCCCceEEEEcCEEEEe
Confidence                          0  00012334444443  89999999999998765   33 5555542   4  57999999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       296 ~G~~p  300 (491)
T 3urh_A          296 TGRKP  300 (491)
T ss_dssp             CCCEE
T ss_pred             eCCcc
Confidence            99765

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.65  E-value=2.8e-07  Score=66.60  Aligned_cols=93  Identities=16%  Similarity=0.173  Sum_probs=69.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++.+....                                           
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------------------------------------------  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------------------------------------------  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------------------------------------------
Confidence            4799999999999999999999999999998654210                                           


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec-----CcEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD-----GTIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~-----g~~~~a~~vI~a  160 (184)
                                          ...+.+.+.+. .+++++.+++++++...+  +.. ..|.+.+     ++++.+|.||.|
T Consensus       211 --------------------~~~~~~~l~~~-~gv~i~~~~~v~~i~~~~--~~~-~~v~~~~~~~g~~~~i~~D~vi~a  266 (338)
T 3itj_A          211 --------------------STIMQKRAEKN-EKIEILYNTVALEAKGDG--KLL-NALRIKNTKKNEETDLPVSGLFYA  266 (338)
T ss_dssp             --------------------CHHHHHHHHHC-TTEEEECSEEEEEEEESS--SSE-EEEEEEETTTTEEEEEECSEEEEC
T ss_pred             --------------------CHHHHHHHHhc-CCeEEeecceeEEEEccc--CcE-EEEEEEECCCCceEEEEeCEEEEE
Confidence                                12344444443 289999999999998765  222 4455554     357899999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       267 ~G~~p  271 (338)
T 3itj_A          267 IGHTP  271 (338)
T ss_dssp             SCEEE
T ss_pred             eCCCC
Confidence            99754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.64  E-value=3.1e-08  Score=75.64  Aligned_cols=39  Identities=46%  Similarity=0.637  Sum_probs=36.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .+||+|||||++|+++|+.|++.|.+|+|+|+.+..++.
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~   71 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR   71 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCc
Confidence            579999999999999999999999999999998877654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.63  E-value=4.1e-07  Score=69.26  Aligned_cols=97  Identities=20%  Similarity=0.234  Sum_probs=69.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++++.......                   .+                     
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~-------------------d~---------------------  227 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGF-------------------DQ---------------------  227 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTTS-------------------CH---------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCccc-------------------CH---------------------
Confidence            47999999999999999999999999999874211000                   00                     


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCc-----EEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT-----IVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~-----~~~a~~vI~a  160 (184)
                                        --...+.+.+.+.  +++++.++++.++...++  .. +.|.+.++.     ++.+|.||.|
T Consensus       228 ------------------~~~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~~--~~-~~v~~~~~~~~~~~~~~~D~vi~a  284 (483)
T 3dgh_A          228 ------------------QMAELVAASMEER--GIPFLRKTVPLSVEKQDD--GK-LLVKYKNVETGEESEDVYDTVLWA  284 (483)
T ss_dssp             ------------------HHHHHHHHHHHHT--TCCEEETEEEEEEEECTT--SC-EEEEEEETTTCCEEEEEESEEEEC
T ss_pred             ------------------HHHHHHHHHHHhC--CCEEEeCCEEEEEEEcCC--Cc-EEEEEecCCCCceeEEEcCEEEEC
Confidence                              0012334444444  899999999999987542  22 566665543     7899999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       285 ~G~~p  289 (483)
T 3dgh_A          285 IGRKG  289 (483)
T ss_dssp             SCEEE
T ss_pred             ccccc
Confidence            99754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.62  E-value=7.1e-07  Score=64.30  Aligned_cols=92  Identities=23%  Similarity=0.273  Sum_probs=67.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|.+|+-+|..|++.|.+|+++++.+....                                           
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------------------  189 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA-------------------------------------------  189 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc-------------------------------------------
Confidence            4799999999999999999999999999998653200                                           


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cCc--EEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DGT--IVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g~--~~~a~~vI~a  160 (184)
                                          ...+.+.+.+. .+++++.+++++++..++   .. ..|.+.   +|+  ++.+|.||.|
T Consensus       190 --------------------~~~~~~~l~~~-~gv~i~~~~~v~~i~~~~---~v-~~v~~~~~~~g~~~~i~~D~vi~a  244 (325)
T 2q7v_A          190 --------------------NKVAQARAFAN-PKMKFIWDTAVEEIQGAD---SV-SGVKLRNLKTGEVSELATDGVFIF  244 (325)
T ss_dssp             --------------------CHHHHHHHHTC-TTEEEECSEEEEEEEESS---SE-EEEEEEETTTCCEEEEECSEEEEC
T ss_pred             --------------------chHHHHHHHhc-CCceEecCCceEEEccCC---cE-EEEEEEECCCCcEEEEEcCEEEEc
Confidence                                01233333322 289999999999998643   32 345544   564  7899999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       245 ~G~~p  249 (325)
T 2q7v_A          245 IGHVP  249 (325)
T ss_dssp             SCEEE
T ss_pred             cCCCC
Confidence            99754

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.61  E-value=3.3e-08  Score=77.45  Aligned_cols=39  Identities=28%  Similarity=0.383  Sum_probs=35.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+..++
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg   83 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSG   83 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCC
Confidence            368999999999999999999999999999999876653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.61  E-value=3.7e-08  Score=74.42  Aligned_cols=38  Identities=42%  Similarity=0.543  Sum_probs=34.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .+||+|||||++|+++|+.|++.|++|+|||+.+..++
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG  159 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG  159 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCC
Confidence            47999999999999999999999999999999876653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.61  E-value=3.5e-07  Score=66.12  Aligned_cols=95  Identities=13%  Similarity=0.192  Sum_probs=69.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|.+|+-+|..|++.|.+|+++++.+.....                    +.                    
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~--------------------~~--------------------  192 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAH--------------------EA--------------------  192 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSC--------------------HH--------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCcc--------------------HH--------------------
Confidence            47999999999999999999999999999986542100                    00                    


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a  160 (184)
                                         ....+.+.+.+.  +++++.++++.++..++   .. ..|.+.   +|  +++.+|.||.|
T Consensus       193 -------------------~~~~l~~~l~~~--gv~v~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~i~~D~vi~a  247 (335)
T 2zbw_A          193 -------------------SVKELMKAHEEG--RLEVLTPYELRRVEGDE---RV-RWAVVFHNQTQEELALEVDAVLIL  247 (335)
T ss_dssp             -------------------HHHHHHHHHHTT--SSEEETTEEEEEEEESS---SE-EEEEEEETTTCCEEEEECSEEEEC
T ss_pred             -------------------HHHHHHhccccC--CeEEecCCcceeEccCC---Ce-eEEEEEECCCCceEEEecCEEEEe
Confidence                               012344444433  89999999999998743   32 345554   66  57999999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|..+
T Consensus       248 ~G~~p  252 (335)
T 2zbw_A          248 AGYIT  252 (335)
T ss_dssp             CCEEE
T ss_pred             ecCCC
Confidence            99765

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.61  E-value=6.2e-07  Score=64.44  Aligned_cols=92  Identities=16%  Similarity=0.208  Sum_probs=67.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++.+....                                           
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~-------------------------------------------  192 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC-------------------------------------------  192 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC-------------------------------------------
Confidence            4799999999999999999999999999998643200                                           


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cCc--EEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DGT--IVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g~--~~~a~~vI~a  160 (184)
                                          ...+.+.+.+.  +++++++++++++..++  +.. ..+.+.   +|+  ++.+|.||.|
T Consensus       193 --------------------~~~l~~~l~~~--gv~i~~~~~v~~i~~~~--~~v-~~v~~~~~~~g~~~~i~~D~vi~a  247 (319)
T 3cty_A          193 --------------------ENAYVQEIKKR--NIPYIMNAQVTEIVGDG--KKV-TGVKYKDRTTGEEKLIETDGVFIY  247 (319)
T ss_dssp             --------------------CHHHHHHHHHT--TCCEECSEEEEEEEESS--SSE-EEEEEEETTTCCEEEECCSEEEEC
T ss_pred             --------------------CHHHHHHHhcC--CcEEEcCCeEEEEecCC--ceE-EEEEEEEcCCCceEEEecCEEEEe
Confidence                                01233444433  89999999999998764  222 344443   564  6899999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       248 ~G~~p  252 (319)
T 3cty_A          248 VGLIP  252 (319)
T ss_dssp             CCEEE
T ss_pred             eCCcc
Confidence            99754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.60  E-value=4.2e-08  Score=75.01  Aligned_cols=34  Identities=32%  Similarity=0.484  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++||+|||||++|+++|..|++.|.+|+|||+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4899999999999999999999999999999974

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.59  E-value=5.3e-07  Score=68.20  Aligned_cols=133  Identities=13%  Similarity=0.184  Sum_probs=74.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccc----eeeecccHHHHHHHcCChHHHHhcCCCccceEE
Q 030042            5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGA----AISFAPNAWLALDALGVSHKLASIYPPVNRISV   78 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (184)
                      ..+|+|||||.+|+-+|..|++.  +.+|+++++.+.......    ...+.+.....+..+.  +.......       
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~--~~~~~~~~-------  297 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSRE--HAERERLL-------  297 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSC--HHHHHHHH-------
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCC--HHHHHHHH-------
Confidence            35899999999999999999998  889999999875422100    0001111111221110  00000000       


Q ss_pred             EecCCCceeeeecCCCCCCCCCCeeeeH---HHHHHHHHh----hCCCCeeeeCceEEEEeccCCCCCcceEEEEe---c
Q 030042           79 TNLGTGATQETSLTGKFGDGSGPRFIHR---KKLLQTLAD----ELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---D  148 (184)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~----~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~  148 (184)
                       ...    ....      +.    .++.   ..+.+.+..    ...+++++.+++|+++...+   +. +.+.+.   +
T Consensus       298 -~~~----~~~~------~~----~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~---~~-~~v~~~~~~~  358 (463)
T 3s5w_A          298 -REY----HNTN------YS----VVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATA---QG-IELALRDAGS  358 (463)
T ss_dssp             -HHT----GGGT------SS----CBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET---TE-EEEEEEETTT
T ss_pred             -HHh----hccC------CC----cCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC---CE-EEEEEEEcCC
Confidence             000    0000      00    0111   111111111    11388999999999998765   44 677766   6


Q ss_pred             Cc--EEEeeEEEecCCcch
Q 030042          149 GT--IVKTKFLIGCDGIHS  165 (184)
Q Consensus       149 g~--~~~a~~vI~a~G~~s  165 (184)
                      |+  ++.+|.||.|+|...
T Consensus       359 g~~~~~~~D~Vv~AtG~~p  377 (463)
T 3s5w_A          359 GELSVETYDAVILATGYER  377 (463)
T ss_dssp             CCEEEEEESEEEECCCEEC
T ss_pred             CCeEEEECCEEEEeeCCCC
Confidence            65  489999999999753

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.59  E-value=6.7e-07  Score=67.47  Aligned_cols=104  Identities=22%  Similarity=0.333  Sum_probs=72.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++++.+......                                         
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  187 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRS-----------------------------------------  187 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh-----------------------------------------
Confidence            489999999999999999999999999999876431100                                         


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~  164 (184)
                                        . ..++.+.+.+.+. .++++.++++.++...+   .  +.....+++++.+|.||.|+|..
T Consensus       188 ------------------~-~~~~~~~l~~~l~~~v~i~~~~~v~~i~~~~---~--v~~v~~~g~~i~~D~Vv~a~G~~  243 (449)
T 3kd9_A          188 ------------------F-DKEVTDILEEKLKKHVNLRLQEITMKIEGEE---R--VEKVVTDAGEYKAELVILATGIK  243 (449)
T ss_dssp             ------------------S-CHHHHHHHHHHHTTTSEEEESCCEEEEECSS---S--CCEEEETTEEEECSEEEECSCEE
T ss_pred             ------------------c-CHHHHHHHHHHHHhCcEEEeCCeEEEEeccC---c--EEEEEeCCCEEECCEEEEeeCCc
Confidence                              0 0223333333322 38889999999987653   2  32334567789999999999986


Q ss_pred             h--HHHhhhCCC
Q 030042          165 S--TVAWWLGLS  174 (184)
Q Consensus       165 s--~~~~~~~~~  174 (184)
                      .  .+.+.+++.
T Consensus       244 p~~~l~~~~gl~  255 (449)
T 3kd9_A          244 PNIELAKQLGVR  255 (449)
T ss_dssp             ECCHHHHHTTCC
T ss_pred             cCHHHHHhCCcc
Confidence            4  344555543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.59  E-value=7.8e-07  Score=63.64  Aligned_cols=93  Identities=13%  Similarity=0.180  Sum_probs=67.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++.+.+..                                           
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------------------  180 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRC-------------------------------------------  180 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCC-------------------------------------------
Confidence            5799999999999999999999999999998653200                                           


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cCc--EEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DGT--IVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g~--~~~a~~vI~a  160 (184)
                                          ...+.+.+.+. .+++++.+++++++...+  +.. ..+.+.   +|+  ++.+|.||.|
T Consensus       181 --------------------~~~~~~~l~~~-~gv~v~~~~~v~~i~~~~--~~v-~~v~~~~~~~g~~~~i~~D~vi~a  236 (311)
T 2q0l_A          181 --------------------APITLEHAKNN-DKIEFLTPYVVEEIKGDA--SGV-SSLSIKNTATNEKRELVVPGFFIF  236 (311)
T ss_dssp             --------------------CHHHHHHHHTC-TTEEEETTEEEEEEEEET--TEE-EEEEEEETTTCCEEEEECSEEEEC
T ss_pred             --------------------CHHHHHHHhhC-CCeEEEeCCEEEEEECCC--CcE-eEEEEEecCCCceEEEecCEEEEE
Confidence                                01233334332 289999999999998763  121 245544   564  7899999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       237 ~G~~p  241 (311)
T 2q0l_A          237 VGYDV  241 (311)
T ss_dssp             SCEEE
T ss_pred             ecCcc
Confidence            99754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.58  E-value=7.7e-07  Score=67.86  Aligned_cols=97  Identities=15%  Similarity=0.173  Sum_probs=68.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++++.......                   .+                     
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~-------------------d~---------------------  225 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGF-------------------DQ---------------------  225 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTS-------------------CH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccccC-------------------CH---------------------
Confidence            47999999999999999999999999999975311000                   00                     


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec---Cc--EEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---GT--IVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g~--~~~a~~vI~a  160 (184)
                                    .    -...+.+.+.+.  +++++.++++.++...++  .. +.+.+.+   |+  ++.+|.||.|
T Consensus       226 --------------~----~~~~l~~~l~~~--gv~~~~~~~v~~i~~~~~--~~-~~v~~~~~~~g~~~~~~~D~vi~a  282 (488)
T 3dgz_A          226 --------------Q----MSSLVTEHMESH--GTQFLKGCVPSHIKKLPT--NQ-LQVTWEDHASGKEDTGTFDTVLWA  282 (488)
T ss_dssp             --------------H----HHHHHHHHHHHT--TCEEEETEEEEEEEECTT--SC-EEEEEEETTTTEEEEEEESEEEEC
T ss_pred             --------------H----HHHHHHHHHHHC--CCEEEeCCEEEEEEEcCC--Cc-EEEEEEeCCCCeeEEEECCEEEEc
Confidence                          0    012334444444  899999999999987541  32 5555544   54  4789999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       283 ~G~~p  287 (488)
T 3dgz_A          283 IGRVP  287 (488)
T ss_dssp             SCEEE
T ss_pred             ccCCc
Confidence            99754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.56  E-value=9.8e-07  Score=63.26  Aligned_cols=101  Identities=17%  Similarity=0.238  Sum_probs=72.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|.+|+-+|..|++.|.+|+++++.+....                                           
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA-------------------------------------------  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc-------------------------------------------
Confidence            5799999999999999999999999999998654210                                           


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec---Cc--EEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---GT--IVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g~--~~~a~~vI~a  160 (184)
                                          ...+.+.+.+. .+++++.+++++++..++   .. ..|.+.+   |+  ++.+|.||.|
T Consensus       192 --------------------~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~~~~D~vv~a  246 (323)
T 3f8d_A          192 --------------------QPIYVETVKKK-PNVEFVLNSVVKEIKGDK---VV-KQVVVENLKTGEIKELNVNGVFIE  246 (323)
T ss_dssp             --------------------CHHHHHHHHTC-TTEEEECSEEEEEEEESS---SE-EEEEEEETTTCCEEEEECSEEEEC
T ss_pred             --------------------CHHHHHHHHhC-CCcEEEeCCEEEEEeccC---ce-eEEEEEECCCCceEEEEcCEEEEE
Confidence                                01233333332 288999999999998764   33 4566654   65  7899999999


Q ss_pred             CCcch--HHHhhhCCC
Q 030042          161 DGIHS--TVAWWLGLS  174 (184)
Q Consensus       161 ~G~~s--~~~~~~~~~  174 (184)
                      +|...  .+.+.+++.
T Consensus       247 ~G~~p~~~~~~~~g~~  262 (323)
T 3f8d_A          247 IGFDPPTDFAKSNGIE  262 (323)
T ss_dssp             CCEECCHHHHHHTTCC
T ss_pred             ECCCCChhHHhhcCee
Confidence            99754  344545443

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.55  E-value=1.1e-07  Score=72.24  Aligned_cols=54  Identities=9%  Similarity=0.221  Sum_probs=43.6

Q ss_pred             HHHHHHHhhCC----------CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042          108 KLLQTLADELP----------NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus       108 ~l~~~l~~~~~----------~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                      .+.+.|.+.+.          +.+|+++++|+++...+   +. +.|.+.+|+++.||.||.|++.+.
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~---~~-v~v~~~~g~~~~ad~vI~a~~~~~  270 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSP---GG-VTVKTEDNSVYSADYVMVSASLGV  270 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECS---SC-EEEEETTSCEEEESEEEECSCHHH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcC---Cc-EEEEECCCCEEEcCEEEEecCHHH
Confidence            56677776653          35899999999999875   44 779999998999999999998654

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.54  E-value=9.7e-08  Score=70.16  Aligned_cols=34  Identities=38%  Similarity=0.556  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +||+|||||++|+.+|+.|++.|.+|+|+|+++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            6999999999999999999999999999998763

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.54  E-value=8.9e-07  Score=67.31  Aligned_cols=99  Identities=17%  Similarity=0.155  Sum_probs=70.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  225 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS------------------------------------------  225 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------------------------------
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc------------------------------------------
Confidence            47999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec-------CcEEEeeEEE
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD-------GTIVKTKFLI  158 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~-------g~~~~a~~vI  158 (184)
                                 .  +  .--...+.+.+.+.  +++++.++++++++..++ +.. +.+.+.+       |+++.+|.||
T Consensus       226 -----------~--d--~~~~~~~~~~l~~~--gv~i~~~~~v~~i~~~~~-~~~-~~v~~~~~~~g~~~g~~~~~D~vi  286 (478)
T 3dk9_A          226 -----------F--D--SMISTNCTEELENA--GVEVLKFSQVKEVKKTLS-GLE-VSMVTAVPGRLPVMTMIPDVDCLL  286 (478)
T ss_dssp             -----------S--C--HHHHHHHHHHHHHT--TCEEETTEEEEEEEECSS-SEE-EEEEECCTTSCCEEEEEEEESEEE
T ss_pred             -----------c--C--HHHHHHHHHHHHHC--CCEEEeCCEEEEEEEcCC-CcE-EEEEEccCCCCcccceEEEcCEEE
Confidence                       0  0  00012344444444  899999999999987642 112 5566654       2578999999


Q ss_pred             ecCCcch
Q 030042          159 GCDGIHS  165 (184)
Q Consensus       159 ~a~G~~s  165 (184)
                      .|+|...
T Consensus       287 ~a~G~~p  293 (478)
T 3dk9_A          287 WAIGRVP  293 (478)
T ss_dssp             ECSCEEE
T ss_pred             Eeecccc
Confidence            9999754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.54  E-value=6.5e-07  Score=65.56  Aligned_cols=104  Identities=17%  Similarity=0.243  Sum_probs=67.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.....                     .             .+  .  
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~---------------------~-------------~d--~--  208 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP---------------------D-------------AD--P--  208 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------------------------------------------C--
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCC---------------------C-------------CC--C--
Confidence            47999999999999999999999999999986542100                     0             00  0  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCC-CeeeeCceEEEEeccCCCCCcceEEEEecCcEEE-eeEEEecCCc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPN-GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVK-TKFLIGCDGI  163 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~-a~~vI~a~G~  163 (184)
                             .   ....  ......+.+.+.+.  + ++++.+++|.++...+   +. +.+.+.+|+.+. +|.||.|+|.
T Consensus       209 -------~---~~~~--~~~~~~l~~~l~~~--g~v~~~~~~~v~~i~~~~---~~-~~v~~~~g~~~~~~d~vi~a~G~  270 (369)
T 3d1c_A          209 -------S---VRLS--PYTRQRLGNVIKQG--ARIEMNVHYTVKDIDFNN---GQ-YHISFDSGQSVHTPHEPILATGF  270 (369)
T ss_dssp             -------T---TSCC--HHHHHHHHHHHHTT--CCEEEECSCCEEEEEEET---TE-EEEEESSSCCEEESSCCEECCCB
T ss_pred             -------C---ccCC--HHHHHHHHHHHhhC--CcEEEecCcEEEEEEecC---Cc-eEEEecCCeEeccCCceEEeecc
Confidence                   0   0000  00012333333332  5 8999999999997543   33 678888887665 5999999997


Q ss_pred             ch
Q 030042          164 HS  165 (184)
Q Consensus       164 ~s  165 (184)
                      ..
T Consensus       271 ~~  272 (369)
T 3d1c_A          271 DA  272 (369)
T ss_dssp             CG
T ss_pred             CC
Confidence            54

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.53  E-value=1.6e-06  Score=61.94  Aligned_cols=93  Identities=19%  Similarity=0.255  Sum_probs=67.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.+.+|+++++.+....                                           
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------------------  181 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-------------------------------------------  181 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCc-------------------------------------------
Confidence            4799999999999999999999999999998653200                                           


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec---Cc--EEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---GT--IVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g~--~~~a~~vI~a  160 (184)
                                          ...+.+.+.+. .+++++.+++++++..++  +.. ..+.+.+   |+  ++.+|.||.|
T Consensus       182 --------------------~~~~~~~l~~~-~gv~v~~~~~v~~i~~~~--~~v-~~v~~~~~~~g~~~~i~~D~vi~a  237 (310)
T 1fl2_A          182 --------------------DQVLQDKLRSL-KNVDIILNAQTTEVKGDG--SKV-VGLEYRDRVSGDIHNIELAGIFVQ  237 (310)
T ss_dssp             --------------------CHHHHHHHHTC-TTEEEESSEEEEEEEESS--SSE-EEEEEEETTTCCEEEEECSEEEEC
T ss_pred             --------------------cHHHHHHHhhC-CCeEEecCCceEEEEcCC--CcE-EEEEEEECCCCcEEEEEcCEEEEe
Confidence                                01233344432 388999999999998654  222 2455443   53  6889999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       238 ~G~~p  242 (310)
T 1fl2_A          238 IGLLP  242 (310)
T ss_dssp             SCEEE
T ss_pred             eCCcc
Confidence            99754

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.53  E-value=1.1e-06  Score=66.65  Aligned_cols=97  Identities=26%  Similarity=0.345  Sum_probs=71.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++++.+.....                                          
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  210 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT------------------------------------------  210 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC------------------------------------------
Confidence            47999999999999999999999999999987543110                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe--cCc--EEEeeEEEecC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV--DGT--IVKTKFLIGCD  161 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~--~g~--~~~a~~vI~a~  161 (184)
                                   .    . ..++.+.+.+.+. ++++.+++|+++...++  +. +.+.+.  +|+  ++.+|.||.|+
T Consensus       211 -------------~----~-d~~~~~~l~~~l~-v~i~~~~~v~~i~~~~~--~~-v~v~~~~~~G~~~~i~~D~vi~a~  268 (466)
T 3l8k_A          211 -------------L----E-DQDIVNTLLSILK-LNIKFNSPVTEVKKIKD--DE-YEVIYSTKDGSKKSIFTNSVVLAA  268 (466)
T ss_dssp             -------------S----C-CHHHHHHHHHHHC-CCEECSCCEEEEEEEET--TE-EEEEECCTTSCCEEEEESCEEECC
T ss_pred             -------------C----C-CHHHHHHHHhcCE-EEEEECCEEEEEEEcCC--Cc-EEEEEEecCCceEEEEcCEEEECc
Confidence                         0    0 0234444444443 88999999999987531  23 667776  565  89999999999


Q ss_pred             CcchH
Q 030042          162 GIHST  166 (184)
Q Consensus       162 G~~s~  166 (184)
                      |....
T Consensus       269 G~~p~  273 (466)
T 3l8k_A          269 GRRPV  273 (466)
T ss_dssp             CEEEC
T ss_pred             CCCcc
Confidence            97653

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.50  E-value=9e-08  Score=73.55  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=32.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKR-LGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~-~g~~v~vie~~~~   39 (184)
                      .+||+||||||++|+.+|..|++ .+.+|+|||++..
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            46999999999999999999998 5789999998753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.49  E-value=9e-08  Score=72.37  Aligned_cols=39  Identities=21%  Similarity=0.213  Sum_probs=34.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh-C------CCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKR-L------GVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~-~------g~~v~vie~~~~~~~   42 (184)
                      ..+||+|||||++|+.+|..|++ .      |.+|+|||+.+.+++
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg   47 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG   47 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCST
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCC
Confidence            46899999999999999999999 7      899999999876643

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.49  E-value=2.3e-06  Score=61.80  Aligned_cols=95  Identities=18%  Similarity=0.241  Sum_probs=66.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+....                                           
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~-------------------------------------------  196 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA-------------------------------------------  196 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc-------------------------------------------
Confidence            4799999999999999999999999999998754200                                           


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a  160 (184)
                                          ...+.+.+.+. .+++++++++++++..+++ +.....+.+.   +|  +++.+|.||.|
T Consensus       197 --------------------~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~-~~~v~~v~~~~~~~g~~~~i~~D~vi~a  254 (333)
T 1vdc_A          197 --------------------SKIMQQRALSN-PKIDVIWNSSVVEAYGDGE-RDVLGGLKVKNVVTGDVSDLKVSGLFFA  254 (333)
T ss_dssp             --------------------CHHHHHHHHTC-TTEEEECSEEEEEEEESSS-SSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             --------------------cHHHHHHHHhC-CCeeEecCCceEEEeCCCC-ccceeeEEEEecCCCceEEEecCEEEEE
Confidence                                01222222222 2899999999999987541 0021234443   45  57899999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       255 ~G~~p  259 (333)
T 1vdc_A          255 IGHEP  259 (333)
T ss_dssp             SCEEE
T ss_pred             eCCcc
Confidence            99754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.49  E-value=1.3e-06  Score=62.37  Aligned_cols=93  Identities=15%  Similarity=0.258  Sum_probs=67.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.+.+|+++++.+.....                                          
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~------------------------------------------  185 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAA------------------------------------------  185 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSC------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCC------------------------------------------
Confidence            47999999999999999999999999999986542000                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe--cCc--EEEeeEEEecC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV--DGT--IVKTKFLIGCD  161 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~--~g~--~~~a~~vI~a~  161 (184)
                                           ..+.+.+.+. .++++++++++.++...+  +.. ..+.+.  +|+  ++.+|.||.|+
T Consensus       186 ---------------------~~~~~~~~~~-~gv~~~~~~~v~~i~~~~--~~~-~~v~~~~~~g~~~~~~~D~vv~a~  240 (315)
T 3r9u_A          186 ---------------------PSTVEKVKKN-EKIELITSASVDEVYGDK--MGV-AGVKVKLKDGSIRDLNVPGIFTFV  240 (315)
T ss_dssp             ---------------------HHHHHHHHHC-TTEEEECSCEEEEEEEET--TEE-EEEEEECTTSCEEEECCSCEEECS
T ss_pred             ---------------------HHHHHHHHhc-CCeEEEeCcEEEEEEcCC--CcE-EEEEEEcCCCCeEEeecCeEEEEE
Confidence                                 1222223222 289999999999998765  122 334443  775  78899999999


Q ss_pred             Ccch
Q 030042          162 GIHS  165 (184)
Q Consensus       162 G~~s  165 (184)
                      |...
T Consensus       241 G~~p  244 (315)
T 3r9u_A          241 GLNV  244 (315)
T ss_dssp             CEEE
T ss_pred             cCCC
Confidence            9754

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.49  E-value=1.1e-07  Score=73.49  Aligned_cols=36  Identities=33%  Similarity=0.504  Sum_probs=33.7

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+||++|||+|++|+++|+.|++.|.+|+|+|+...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            469999999999999999999999999999999764

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.49  E-value=3.4e-07  Score=66.93  Aligned_cols=96  Identities=23%  Similarity=0.341  Sum_probs=67.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|.+|+-+|..|++.+.+|+++++.+.+...       +             .                    
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~-------~-------------~--------------------  203 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH-------G-------------K--------------------  203 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC-------S-------------H--------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC-------H-------------H--------------------
Confidence            47999999999999999999999999999986542100       0             0                    


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE--ecC--cEEEeeEEEecC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL--VDG--TIVKTKFLIGCD  161 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~~g--~~~~a~~vI~a~  161 (184)
                                         ....+.+.+.+.  +++++++++++++...+  +.. ..|.+  .+|  +++.+|.||.|+
T Consensus       204 -------------------~~~~l~~~~~~~--gv~i~~~~~v~~i~~~~--~~v-~~v~~~~~~g~~~~i~~D~vi~a~  259 (360)
T 3ab1_A          204 -------------------TAHEVERARANG--TIDVYLETEVASIEESN--GVL-TRVHLRSSDGSKWTVEADRLLILI  259 (360)
T ss_dssp             -------------------HHHSSHHHHHHT--SEEEESSEEEEEEEEET--TEE-EEEEEEETTCCEEEEECSEEEECC
T ss_pred             -------------------HHHHHHHHhhcC--ceEEEcCcCHHHhccCC--Cce-EEEEEEecCCCeEEEeCCEEEECC
Confidence                               001122223332  79999999999998764  221 23444  367  578999999999


Q ss_pred             Ccch
Q 030042          162 GIHS  165 (184)
Q Consensus       162 G~~s  165 (184)
                      |...
T Consensus       260 G~~p  263 (360)
T 3ab1_A          260 GFKS  263 (360)
T ss_dssp             CBCC
T ss_pred             CCCC
Confidence            9754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.45  E-value=2.4e-06  Score=65.94  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            5799999999999999999999999999999875

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.45  E-value=2.1e-06  Score=61.80  Aligned_cols=99  Identities=20%  Similarity=0.207  Sum_probs=70.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|.+|+-+|..|++.+.+|+++++.+.....                                          
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~------------------------------------------  192 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH------------------------------------------  192 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC------------------------------------------
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc------------------------------------------
Confidence            47999999999999999999999999999986542100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec-----CcEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD-----GTIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~-----g~~~~a~~vI~a  160 (184)
                                           ....+.+.+.  +++++.++++.++...+   .. ..+.+.+     ++++.+|.||.|
T Consensus       193 ---------------------~~~~~~l~~~--gv~~~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~~~~D~vv~a  245 (332)
T 3lzw_A          193 ---------------------EHSVENLHAS--KVNVLTPFVPAELIGED---KI-EQLVLEEVKGDRKEILEIDDLIVN  245 (332)
T ss_dssp             ---------------------HHHHHHHHHS--SCEEETTEEEEEEECSS---SC-CEEEEEETTSCCEEEEECSEEEEC
T ss_pred             ---------------------HHHHHHHhcC--CeEEEeCceeeEEecCC---ce-EEEEEEecCCCceEEEECCEEEEe
Confidence                                 0112223333  89999999999998765   22 4455544     357899999999


Q ss_pred             CCcch--HHHhhhCC
Q 030042          161 DGIHS--TVAWWLGL  173 (184)
Q Consensus       161 ~G~~s--~~~~~~~~  173 (184)
                      +|...  .+.+.+++
T Consensus       246 ~G~~p~~~~~~~~~~  260 (332)
T 3lzw_A          246 YGFVSSLGPIKNWGL  260 (332)
T ss_dssp             CCEECCCGGGGGSSC
T ss_pred             eccCCCchHHhhcCc
Confidence            99755  23344443

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.44  E-value=2.2e-07  Score=74.12  Aligned_cols=39  Identities=26%  Similarity=0.434  Sum_probs=35.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .+||+|||||++|+++|+.|++.|++|+|||+.+..++.
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~  427 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGH  427 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCe
Confidence            479999999999999999999999999999998776543

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.42  E-value=2.6e-07  Score=72.00  Aligned_cols=39  Identities=33%  Similarity=0.412  Sum_probs=34.7

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHh-CCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKR-LGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~-~g~~v~vie~~~~   39 (184)
                      |++.++|++|||+|++|+++|..|++ .|.+|+|+|++..
T Consensus        20 ~~~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~   59 (587)
T 1gpe_A           20 VAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (587)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             cCcccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCc
Confidence            34467999999999999999999999 7999999999754

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.42  E-value=1.2e-07  Score=73.18  Aligned_cols=36  Identities=33%  Similarity=0.396  Sum_probs=32.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      .+||++|||||.+|+.+|..|++ |.+|+|+|+....
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            36899999999999999999999 9999999998643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.42  E-value=1.7e-06  Score=62.57  Aligned_cols=94  Identities=18%  Similarity=0.270  Sum_probs=65.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|.+|+-+|..|++.|.+|+++++.+....                                        .  
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~----------------------------------------~--  193 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA----------------------------------------S--  193 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS----------------------------------------C--
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc----------------------------------------c--
Confidence            5799999999999999999999999999998643200                                        0  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE-ecC--cEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDG--TIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g--~~~~a~~vI~a~G  162 (184)
                                           ..+.+.+.+. .+++++++++++++..++. ... +.+.. .+|  +++.+|.||.|+|
T Consensus       194 ---------------------~~~~~~~~~~-~gV~v~~~~~v~~i~~~~~-~~~-v~~~~~~~g~~~~i~~D~vi~a~G  249 (335)
T 2a87_A          194 ---------------------KIMLDRARNN-DKIRFLTNHTVVAVDGDTT-VTG-LRVRDTNTGAETTLPVTGVFVAIG  249 (335)
T ss_dssp             ---------------------TTHHHHHHHC-TTEEEECSEEEEEEECSSS-CCE-EEEEEETTSCCEEECCSCEEECSC
T ss_pred             ---------------------HHHHHHHhcc-CCcEEEeCceeEEEecCCc-EeE-EEEEEcCCCceEEeecCEEEEccC
Confidence                                 0122222222 2899999999999986541 112 33332 144  5789999999999


Q ss_pred             cch
Q 030042          163 IHS  165 (184)
Q Consensus       163 ~~s  165 (184)
                      ...
T Consensus       250 ~~p  252 (335)
T 2a87_A          250 HEP  252 (335)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            754

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.42  E-value=3e-07  Score=72.75  Aligned_cols=39  Identities=28%  Similarity=0.502  Sum_probs=35.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .+||+|||||++|+.+|..|++.|.+|+|||+.+..++.
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~  411 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ  411 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCe
Confidence            579999999999999999999999999999998766543

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.42  E-value=2.1e-07  Score=72.73  Aligned_cols=34  Identities=29%  Similarity=0.545  Sum_probs=31.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ..+||+|||||++|+++|..|++.|.+|+|+|+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            4689999999999999999999999999999973

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.42  E-value=2.7e-07  Score=72.87  Aligned_cols=38  Identities=39%  Similarity=0.710  Sum_probs=35.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .+||+|||+|++|+++|+.|++.|++|+|+|+.+..++
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  144 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            47999999999999999999999999999999887765

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.39  E-value=3.7e-07  Score=73.74  Aligned_cols=38  Identities=39%  Similarity=0.710  Sum_probs=35.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .+||+|||+|++||++|+.|++.|++|+|+|+.+..++
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  315 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCC
Confidence            46999999999999999999999999999999887765

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.37  E-value=4.1e-06  Score=64.71  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+|+|||+|++|+-+|..|++.+.+|+++++.+.
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            4799999999999999999999999999999875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.35  E-value=4.6e-07  Score=74.84  Aligned_cols=38  Identities=32%  Similarity=0.537  Sum_probs=34.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~~~~   42 (184)
                      .+||+|||||++|+++|..|++.|+ +|+|||+.+..++
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG  225 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG  225 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCST
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCc
Confidence            4699999999999999999999999 7999999876654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.34  E-value=5.5e-06  Score=63.65  Aligned_cols=99  Identities=12%  Similarity=0.085  Sum_probs=65.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++++..... .                                          
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~-~------------------------------------------  247 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-G------------------------------------------  247 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST-T------------------------------------------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccc-c------------------------------------------
Confidence            469999999999999999999999999999742110 0                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCC-CCcceEE--EEecC-c--EEEeeEEEe
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHD-GSSPVFI--HLVDG-T--IVKTKFLIG  159 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~-~~~~~~v--~~~~g-~--~~~a~~vI~  159 (184)
                                 ....    -...+.+.|.+.  +++++.+++++++...++. ... +.+  ...++ +  ++.+|.||.
T Consensus       248 -----------~d~~----~~~~~~~~l~~~--GV~v~~~~~v~~v~~~~~~~~~~-~~v~~~~~~g~~~~~~~~D~vi~  309 (519)
T 3qfa_A          248 -----------FDQD----MANKIGEHMEEH--GIKFIRQFVPIKVEQIEAGTPGR-LRVVAQSTNSEEIIEGEYNTVML  309 (519)
T ss_dssp             -----------SCHH----HHHHHHHHHHHT--TCEEEESEEEEEEEEEECCTTCE-EEEEEEESSSSCEEEEEESEEEE
T ss_pred             -----------CCHH----HHHHHHHHHHHC--CCEEEeCCeEEEEEEccCCCCce-EEEEEEECCCcEEEEEECCEEEE
Confidence                       0000    012333444444  8999999888887764310 122 333  34455 3  567999999


Q ss_pred             cCCcch
Q 030042          160 CDGIHS  165 (184)
Q Consensus       160 a~G~~s  165 (184)
                      |+|...
T Consensus       310 a~G~~p  315 (519)
T 3qfa_A          310 AIGRDA  315 (519)
T ss_dssp             CSCEEE
T ss_pred             ecCCcc
Confidence            999754

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=98.34  E-value=1e-06  Score=68.90  Aligned_cols=55  Identities=27%  Similarity=0.340  Sum_probs=46.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDAL   60 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~   60 (184)
                      +||++|||+|+.|..+|..|++.|.+|++||+++..++...+..+. ....++...
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~-~l~~w~~~~   62 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFS-GLLSWLKEY   62 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHH-HHHHHHHHT
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHH-HHHHHHHHh
Confidence            6999999999999999999999999999999999988776665543 455555554

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.34  E-value=4.1e-07  Score=70.30  Aligned_cols=39  Identities=28%  Similarity=0.311  Sum_probs=34.3

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCCC
Q 030042            2 AMVEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGL   40 (184)
Q Consensus         2 ~~~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~~   40 (184)
                      +.+++|++|||+|++|+++|+.|++. +.+|+|+|+....
T Consensus        10 ~~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           10 SDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             ccCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            33569999999999999999999998 8999999997543

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.33  E-value=3.7e-07  Score=70.89  Aligned_cols=36  Identities=36%  Similarity=0.415  Sum_probs=33.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLG-VEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~   39 (184)
                      .+||++|||||.+|+++|..|++.+ .+|+|||+...
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4699999999999999999999987 69999999765

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.32  E-value=4.9e-07  Score=70.22  Aligned_cols=35  Identities=34%  Similarity=0.531  Sum_probs=32.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~   38 (184)
                      .+||++|||||.+|+++|..|++. +.+|+|||+..
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            469999999999999999999975 78999999977

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.30  E-value=6.5e-06  Score=64.30  Aligned_cols=32  Identities=31%  Similarity=0.379  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      .+++|||||.+|+-+|..|++.|.+|+++++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            47999999999999999999999999999985

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.29  E-value=6.9e-07  Score=68.41  Aligned_cols=35  Identities=34%  Similarity=0.472  Sum_probs=33.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .++|++|||+|++|+.+|+.|++.|.+|+|+|+..
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   38 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   38 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            57899999999999999999999999999999876

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.27  E-value=6.5e-06  Score=62.98  Aligned_cols=50  Identities=16%  Similarity=0.201  Sum_probs=35.0

Q ss_pred             HHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC----cEEEeeEEEecCCcc
Q 030042          109 LLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG----TIVKTKFLIGCDGIH  164 (184)
Q Consensus       109 l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g----~~~~a~~vI~a~G~~  164 (184)
                      +.+.|.+.  |++++.+++|++++.+.   .. ..+...+|    +++.+|.||.|+|..
T Consensus       278 ~~~~L~~~--GV~v~~~~~v~~v~~~~---~~-~~~~~~dg~~~~~~i~ad~viwa~Gv~  331 (502)
T 4g6h_A          278 AQSHLENT--SIKVHLRTAVAKVEEKQ---LL-AKTKHEDGKITEETIPYGTLIWATGNK  331 (502)
T ss_dssp             HHHHHHHT--TCEEETTEEEEEECSSE---EE-EEEECTTSCEEEEEEECSEEEECCCEE
T ss_pred             HHHHHHhc--ceeeecCceEEEEeCCc---eE-EEEEecCcccceeeeccCEEEEccCCc
Confidence            44444444  89999999999987653   11 33344555    368999999999963

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.26  E-value=1e-05  Score=62.22  Aligned_cols=93  Identities=19%  Similarity=0.257  Sum_probs=66.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+|+|||||.+|+-+|..|++.|.+|+++++.+....                                           
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~-------------------------------------------  392 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-------------------------------------------  392 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS-------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc-------------------------------------------
Confidence            4799999999999999999999999999998653200                                           


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cCc--EEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DGT--IVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g~--~~~a~~vI~a  160 (184)
                                    .      ..+.+.+.+ .++++++.+++++++..++  +.. ..+.+.   +|+  ++.+|.||.|
T Consensus       393 --------------~------~~l~~~l~~-~~gV~v~~~~~v~~i~~~~--~~v-~~v~~~~~~~g~~~~i~~D~vi~a  448 (521)
T 1hyu_A          393 --------------D------QVLQDKVRS-LKNVDIILNAQTTEVKGDG--SKV-VGLEYRDRVSGDIHSVALAGIFVQ  448 (521)
T ss_dssp             --------------C------HHHHHHHTT-CTTEEEECSEEEEEEEECS--SSE-EEEEEEETTTCCEEEEECSEEEEC
T ss_pred             --------------C------HHHHHHHhc-CCCcEEEeCCEEEEEEcCC--CcE-EEEEEEeCCCCceEEEEcCEEEEC
Confidence                          0      123333332 2388999999999998654  222 245444   353  6889999999


Q ss_pred             CCcch
Q 030042          161 DGIHS  165 (184)
Q Consensus       161 ~G~~s  165 (184)
                      +|...
T Consensus       449 ~G~~p  453 (521)
T 1hyu_A          449 IGLLP  453 (521)
T ss_dssp             CCEEE
T ss_pred             cCCCC
Confidence            99654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.26  E-value=8.1e-07  Score=67.24  Aligned_cols=38  Identities=24%  Similarity=0.215  Sum_probs=34.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLR   41 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~   41 (184)
                      ..+||+|||||++|+.+|..|++.|  .+|+|||+.+.++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g   44 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   44 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC
Confidence            3579999999999999999999988  8999999987664

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.21  E-value=5.8e-07  Score=69.62  Aligned_cols=35  Identities=40%  Similarity=0.465  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHh-CCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKR-LGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~-~g~~v~vie~~~~   39 (184)
                      +||++|||||.+|+.+|..|++ .+.+|+|||+...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~   37 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVS   37 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCc
Confidence            5899999999999999999998 6899999999754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.21  E-value=5.7e-06  Score=62.33  Aligned_cols=34  Identities=12%  Similarity=0.132  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVE-PLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~~   39 (184)
                      .+|+|||+|.+|+-+|..|++.+.+ |+++++.+.
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG  247 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCC
Confidence            4799999999999999999999998 999998643

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.21  E-value=1.2e-06  Score=67.08  Aligned_cols=35  Identities=26%  Similarity=0.471  Sum_probs=32.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .++|++|||+|++|+.+|+.|++.|.+|+|+|+..
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   44 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   44 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            46899999999999999999999999999999875

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=98.18  E-value=8.8e-07  Score=70.05  Aligned_cols=36  Identities=25%  Similarity=0.523  Sum_probs=33.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC--------CCeEEEeccC-CC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLG--------VEPLVLEKSD-GL   40 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g--------~~v~vie~~~-~~   40 (184)
                      ..+|+|||||++||++|+.|++.|        ++|+|+|+.+ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            468999999999999999999988        8999999987 66

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.17  E-value=2.1e-05  Score=56.15  Aligned_cols=34  Identities=29%  Similarity=0.597  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+++|||||..|+-+|..|++.|.+|+++++...
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            4799999999999999999999999999997543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.15  E-value=1.8e-05  Score=56.00  Aligned_cols=94  Identities=18%  Similarity=0.126  Sum_probs=68.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|++|+-+|..|++.| +|+++++.+..                                             
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~---------------------------------------------  175 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE---------------------------------------------  175 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC---------------------------------------------
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC---------------------------------------------
Confidence            57999999999999999999999 99999865320                                             


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                                        + ...+.+.+.+.  +++++. ++++++..+       -.|.+.+|+++.+|.||.|+|...
T Consensus       176 ------------------~-~~~~~~~l~~~--gv~i~~-~~v~~i~~~-------~~v~~~~g~~~~~D~vi~a~G~~p  226 (297)
T 3fbs_A          176 ------------------P-DADQHALLAAR--GVRVET-TRIREIAGH-------ADVVLADGRSIALAGLFTQPKLRI  226 (297)
T ss_dssp             ------------------C-CHHHHHHHHHT--TCEEEC-SCEEEEETT-------EEEEETTSCEEEESEEEECCEEEC
T ss_pred             ------------------C-CHHHHHHHHHC--CcEEEc-ceeeeeecC-------CeEEeCCCCEEEEEEEEEccCccc
Confidence                              0 02344445444  788874 888888653       146778888999999999999753


Q ss_pred             --HHHhhhCCC
Q 030042          166 --TVAWWLGLS  174 (184)
Q Consensus       166 --~~~~~~~~~  174 (184)
                        .+.+.+++.
T Consensus       227 ~~~~~~~~g~~  237 (297)
T 3fbs_A          227 TVDWIEKLGCA  237 (297)
T ss_dssp             CCSCHHHHTCC
T ss_pred             CchhHHhcCCc
Confidence              344445543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.11  E-value=1.1e-05  Score=62.51  Aligned_cols=34  Identities=24%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            5799999999999999999999999999999875

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.10  E-value=1.8e-05  Score=59.99  Aligned_cols=34  Identities=15%  Similarity=0.241  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            4799999999999999999999999999998654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.05  E-value=2.7e-05  Score=61.67  Aligned_cols=49  Identities=14%  Similarity=0.247  Sum_probs=36.5

Q ss_pred             HHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCcch
Q 030042          108 KLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGIHS  165 (184)
Q Consensus       108 ~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~~s  165 (184)
                      .+.+.|.+.  |++++.+++++++..+     + +.+. .+|  +++.+|.||.|+|...
T Consensus       578 ~~~~~l~~~--GV~v~~~~~v~~i~~~-----~-v~~~-~~G~~~~i~~D~Vi~a~G~~p  628 (671)
T 1ps9_A          578 IHRTTLLSR--GVKMIPGVSYQKIDDD-----G-LHVV-INGETQVLAVDNVVICAGQEP  628 (671)
T ss_dssp             HHHHHHHHT--TCEEECSCEEEEEETT-----E-EEEE-ETTEEEEECCSEEEECCCEEE
T ss_pred             HHHHHHHhc--CCEEEeCcEEEEEeCC-----e-EEEe-cCCeEEEEeCCEEEECCCccc
Confidence            344555554  8999999999998743     2 5554 566  5789999999999754

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.04  E-value=1.2e-05  Score=64.17  Aligned_cols=33  Identities=24%  Similarity=0.221  Sum_probs=30.7

Q ss_pred             ccEEEEC--CCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIG--AGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiG--gG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|||  ||.+|+-+|..|++.|.+|+++++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            4799999  99999999999999999999999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.03  E-value=3.1e-05  Score=63.71  Aligned_cols=89  Identities=10%  Similarity=0.143  Sum_probs=65.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||+|+.|+-+|..|++.|.+|+|+|+.+...                      .                     
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~----------------------~---------------------  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS----------------------A---------------------  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC----------------------H---------------------
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc----------------------h---------------------
Confidence            479999999999999999999999999999865420                      0                     


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEecc-CCCCCcceEEEEec-------C--cEEEee
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQ-THDGSSPVFIHLVD-------G--TIVKTK  155 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~-~~~~~~~~~v~~~~-------g--~~~~a~  155 (184)
                                           .  .+.+.+.  +++++.+++++++... +  +.. ..|.+.+       |  +++.+|
T Consensus       322 ---------------------~--~~~l~~~--GV~v~~~~~v~~i~~~~~--~~v-~~v~~~~~~~~~~~G~~~~i~~D  373 (965)
T 2gag_A          322 ---------------------A--AAQAVAD--GVQVISGSVVVDTEADEN--GEL-SAIVVAELDEARELGGTQRFEAD  373 (965)
T ss_dssp             ---------------------H--HHHHHHT--TCCEEETEEEEEEEECTT--SCE-EEEEEEEECTTCCEEEEEEEECS
T ss_pred             ---------------------h--HHHHHhC--CeEEEeCCEeEEEeccCC--CCE-EEEEEEeccccCCCCceEEEEcC
Confidence                                 0  1223333  8999999999999863 2  122 2343332       4  579999


Q ss_pred             EEEecCCcch
Q 030042          156 FLIGCDGIHS  165 (184)
Q Consensus       156 ~vI~a~G~~s  165 (184)
                      .||.|+|...
T Consensus       374 ~Vv~a~G~~P  383 (965)
T 2gag_A          374 VLAVAGGFNP  383 (965)
T ss_dssp             EEEEECCEEE
T ss_pred             EEEECCCcCc
Confidence            9999999754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.75  E-value=0.0001  Score=55.75  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVE-PLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~~   39 (184)
                      .+|+|||||.+|+-+|..+.+.|.+ |+++++.+.
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            4799999999999999999999984 999988654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.74  E-value=4.1e-05  Score=48.27  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +..++|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.73  E-value=0.0003  Score=58.39  Aligned_cols=32  Identities=22%  Similarity=0.399  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +|+|||||.+|+-+|..+++.|. +|+++++.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            89999999999999999999997 899999864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.72  E-value=8.8e-05  Score=53.72  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|||+|.+|+-+|..|++.+ +|+++.+..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            57999999999999999999998 799998863

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.71  E-value=4.3e-05  Score=56.50  Aligned_cols=36  Identities=25%  Similarity=0.224  Sum_probs=33.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.+.
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  182 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL  182 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            479999999999999999999999999999987653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.67  E-value=8.5e-05  Score=47.51  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ....++|+|+|..|..+|..|.+.|.+|+++|+++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            45689999999999999999999999999999863

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.64  E-value=7.4e-05  Score=47.92  Aligned_cols=35  Identities=29%  Similarity=0.337  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...++|+|+|..|..+|..|.+.|.+|+++|+++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            35799999999999999999999999999998653

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.63  E-value=0.00026  Score=53.52  Aligned_cols=34  Identities=26%  Similarity=0.391  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--------------------CC-CeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRL--------------------GV-EPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~--------------------g~-~v~vie~~~~   39 (184)
                      .+|+|||+|.+|+-+|..|++.                    |. +|+|+++...
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            4799999999999999999874                    54 8999998654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.60  E-value=0.00036  Score=52.42  Aligned_cols=49  Identities=12%  Similarity=0.198  Sum_probs=35.0

Q ss_pred             HHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE--ec-----CcEEEeeEEEecCCc
Q 030042          107 KKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL--VD-----GTIVKTKFLIGCDGI  163 (184)
Q Consensus       107 ~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~~-----g~~~~a~~vI~a~G~  163 (184)
                      ..+.+.+.+.  +++++.+++|++++.+.      +.+..  .+     +.++.+|.|+.|+|.
T Consensus       212 ~~~~~~l~~~--gI~~~~~~~v~~v~~~~------v~~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          212 GILTKGLKEE--GIEAYTNCKVTKVEDNK------MYVTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             HHHHHHHHHT--TCEEECSEEEEEEETTE------EEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHHHHHC--CCEEEcCCEEEEEECCe------EEEEecccCCccccceEEEEeEEEEcCCC
Confidence            3455555555  89999999999997542      44443  23     457899999999984

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.60  E-value=8.2e-05  Score=46.89  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +-+++|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3479999999999999999999999999999975

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.60  E-value=0.00095  Score=50.52  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHH--------------------hCCC-CeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALK--------------------RLGV-EPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~--------------------~~g~-~v~vie~~~~   39 (184)
                      .+++|||+|.+|+-+|..|+                    +.+. +|+|+++...
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            47999999999999999998                    5677 6999998754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.60  E-value=0.0004  Score=51.62  Aligned_cols=47  Identities=13%  Similarity=0.046  Sum_probs=36.3

Q ss_pred             HHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042          109 LLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus       109 l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                      +.+.+.+.  +++++.+++|++++.+.        |.+.+|+++.+|.||.|+|...
T Consensus       224 ~~~~l~~~--gV~~~~~~~v~~i~~~~--------v~~~~g~~~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          224 VASIYNQL--GIKLVHNFKIKEIREHE--------IVDEKGNTIPADITILLPPYTG  270 (409)
T ss_dssp             HHHHHHHH--TCEEECSCCEEEECSSE--------EEETTSCEEECSEEEEECCEEC
T ss_pred             HHHHHHHC--CCEEEcCCceEEECCCe--------EEECCCCEEeeeEEEECCCCCc
Confidence            44444444  89999999999986432        6667888999999999999754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.51  E-value=0.0013  Score=46.70  Aligned_cols=98  Identities=11%  Similarity=0.137  Sum_probs=61.6

Q ss_pred             ccEEEECCCHH-HHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            6 KDVVIIGAGIA-GLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         6 ~dv~IiGgG~~-Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      .+++|||||.. ++.+|..+++.+.+|+++++.+..                                            
T Consensus       147 ~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~--------------------------------------------  182 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNEL--------------------------------------------  182 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCC--------------------------------------------
T ss_pred             CceeeecCCCchhhhHHHHHHhCCceEEEEeccccc--------------------------------------------
Confidence            46788888865 577888888888889888764321                                            


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~  164 (184)
                                           ...+.+.|.+.  ++.++.+ .+..+...+  +.. ..|.+.+|+++.++.+|++.|..
T Consensus       183 ---------------------~~~~~~~l~~~--g~~~~~~-~v~~~~~~~--~~~-~~v~~~~g~~i~~~~~vi~~g~~  235 (304)
T 4fk1_A          183 ---------------------SQTIMDELSNK--NIPVITE-SIRTLQGEG--GYL-KKVEFHSGLRIERAGGFIVPTFF  235 (304)
T ss_dssp             ---------------------CHHHHHHHHTT--TCCEECS-CEEEEESGG--GCC-CEEEETTSCEECCCEEEECCEEE
T ss_pred             ---------------------hhhhhhhhhcc--ceeEeee-eEEEeecCC--Cee-eeeeccccceeeecceeeeeccc
Confidence                                 01233333333  5566554 455665443  233 56888999889989888888764


Q ss_pred             h--HHHhhhCCC
Q 030042          165 S--TVAWWLGLS  174 (184)
Q Consensus       165 s--~~~~~~~~~  174 (184)
                      .  .+.+.+++.
T Consensus       236 ~~~~~~~~~g~~  247 (304)
T 4fk1_A          236 RPNQFIEQLGCE  247 (304)
T ss_dssp             CSSCHHHHTTCC
T ss_pred             cCChhhhhcCeE
Confidence            3  244455543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.48  E-value=0.00013  Score=45.65  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+++|+|+|..|..+|..|.+.|.+|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999854

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.47  E-value=0.00012  Score=44.28  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLG-VEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~   38 (184)
                      ...++|+|+|..|..++..|.+.| .+|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            458999999999999999999999 8999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.43  E-value=0.00023  Score=44.67  Aligned_cols=34  Identities=29%  Similarity=0.480  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|+|+|..|..+|..|.+.|.+|+++|++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3479999999999999999999999999999853

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.43  E-value=0.00017  Score=51.53  Aligned_cols=38  Identities=21%  Similarity=0.448  Sum_probs=32.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |++....|.|||+|..|..+|..|++.|++|+++|+++
T Consensus        11 ~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            44334579999999999999999999999999999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.39  E-value=0.00018  Score=52.55  Aligned_cols=38  Identities=32%  Similarity=0.392  Sum_probs=32.6

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |++...+|.|||+|..|.++|..|++.|.+|.++++++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            45445689999999999999999999999999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.37  E-value=0.00018  Score=51.40  Aligned_cols=35  Identities=20%  Similarity=0.403  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      .+++|||||+.|+-+|..|++.|.+|+|+|+.+..
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            47999999999999999999999999999987654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.36  E-value=0.0015  Score=50.41  Aligned_cols=34  Identities=21%  Similarity=0.451  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            4799999999999999999999999999998654

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=97.33  E-value=0.00021  Score=54.35  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=32.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |+|....|.|||+|..|...|..|++.|++|+++|++.
T Consensus         1 Msm~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            1 MSLNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             ---CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            66655689999999999999999999999999999864

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.30  E-value=0.00024  Score=51.03  Aligned_cols=38  Identities=26%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             CCCc-cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMV-EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~-~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |+.. ...|.|||+|..|...|..+++.|++|+++|.++
T Consensus         1 Ma~p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            1 MASPAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCCCCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            5543 3579999999999999999999999999999865

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.30  E-value=0.00032  Score=50.34  Aligned_cols=37  Identities=30%  Similarity=0.537  Sum_probs=33.7

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCC-CeEEEecc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKS   37 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~   37 (184)
                      |+|+..+|.|||+|..|..+|+.|++.|+ +++++|..
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            66666789999999999999999999999 99999987

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.23  E-value=0.0023  Score=48.90  Aligned_cols=58  Identities=14%  Similarity=0.013  Sum_probs=44.2

Q ss_pred             HHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch--HHHhhhCCC
Q 030042          111 QTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS--TVAWWLGLS  174 (184)
Q Consensus       111 ~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s--~~~~~~~~~  174 (184)
                      +.+.+.  |++++.+++|+++...+   .. ..+.+.+|+++.+|.||.|+|..+  .+.+.+++.
T Consensus       265 ~~l~~~--GV~v~~~~~v~~i~~~~---~v-~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~  324 (493)
T 1y56_A          265 QELERW--GIDYVHIPNVKRVEGNE---KV-ERVIDMNNHEYKVDALIFADGRRPDINPITQAGGK  324 (493)
T ss_dssp             HHHHHH--TCEEEECSSEEEEECSS---SC-CEEEETTCCEEECSEEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHhC--CcEEEeCCeeEEEecCC---ce-EEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCC
Confidence            444444  89999999999998653   33 556788888999999999999865  356667654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.23  E-value=0.0004  Score=45.67  Aligned_cols=33  Identities=27%  Similarity=0.365  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRL-GVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~   38 (184)
                      -.++|+|+|..|..+|..|.+. |.+|+++|+++
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            4799999999999999999999 99999999864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.12  E-value=0.00048  Score=48.71  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|.|||+|..|...|..|++.|++|+++|+++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3589999999999999999999999999999865

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.09  E-value=0.00067  Score=49.16  Aligned_cols=33  Identities=27%  Similarity=0.298  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ..+|+|||+|..|.++|..|++.|.+|+++++.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            358999999999999999999999999999985

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.05  E-value=0.00054  Score=46.45  Aligned_cols=32  Identities=19%  Similarity=0.263  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|+|+|+|..|..+|..|.+.|.+|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999865

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.05  E-value=0.0051  Score=47.08  Aligned_cols=34  Identities=9%  Similarity=0.279  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~   39 (184)
                      .+|+|||+|-+|.-++..|+++  +.+|.++=|.+.
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            4799999999999999999875  668999888754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.02  E-value=0.00072  Score=48.66  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|||+|..|.++|..|++.|.+|++++|.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            379999999999999999999999999999864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.00  E-value=0.00081  Score=48.67  Aligned_cols=33  Identities=18%  Similarity=0.314  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .+|+|||+|..|..+|..|++.|+ +|+++|.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            589999999999999999999998 999999875

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.99  E-value=0.00085  Score=50.67  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|.|||.|.+|+++|..|.++|.+|.+.|++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            3589999999999999999999999999999854

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.98  E-value=0.00083  Score=48.31  Aligned_cols=37  Identities=16%  Similarity=0.383  Sum_probs=32.6

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      |++ ...|.|||+|..|..+|..|++.|+ +|+++|++.
T Consensus         1 M~~-~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            1 MIE-RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCC-CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCC-CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            663 3589999999999999999999998 999999865

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.96  E-value=0.0007  Score=51.09  Aligned_cols=32  Identities=25%  Similarity=0.575  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|.|||.|..|+.+|..|++.|.+|+++|+++
T Consensus         4 kI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            79999999999999999999999999999864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.94  E-value=0.00074  Score=48.24  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|.|||+|..|..+|..|++.|.+|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999999853

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.94  E-value=0.0008  Score=48.24  Aligned_cols=33  Identities=33%  Similarity=0.470  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|||+|..|.++|..|++.|.+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            379999999999999999999999999999864

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.90  E-value=0.0011  Score=47.12  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|||+|..|.++|..|++.|.+|++++|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            379999999999999999999999999999873

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.90  E-value=0.0012  Score=47.17  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+|.|||.|..|..+|..|.+.|++|+++|+++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999999999999999999999999865

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.89  E-value=0.00099  Score=47.40  Aligned_cols=35  Identities=17%  Similarity=0.088  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..+|.|||.|..|..+|..|++.|++|+++|+++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            35899999999999999999999999999998764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.86  E-value=0.0015  Score=44.51  Aligned_cols=33  Identities=15%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ...|+|||||..|...|..|.+.|.+|+|+++.
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            458999999999999999999999999999974

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.86  E-value=0.001  Score=47.51  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+|.|||.|..|..+|..|++.|++|+++|+++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4579999999999999999999999999999864

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.84  E-value=0.00075  Score=48.31  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=29.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhC-----C-CCeEEEec
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRL-----G-VEPLVLEK   36 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~-----g-~~v~vie~   36 (184)
                      |+.+..+|.|||+|..|.++|..|++.     | .+|+++++
T Consensus         4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            443335799999999999999999998     9 89999987

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.84  E-value=0.001  Score=48.45  Aligned_cols=34  Identities=26%  Similarity=0.285  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+|.|||+|..|..+|..|++.|.+|+++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4589999999999999999999999999999864

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.84  E-value=0.0013  Score=47.33  Aligned_cols=38  Identities=29%  Similarity=0.460  Sum_probs=30.3

Q ss_pred             CCC--ccccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            1 MAM--VEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         1 m~~--~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      |+|  +..+|+|||+|..|.++|+.|+..+.  +++++|.+.
T Consensus         1 ~~m~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            1 MEMVKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             ------CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            454  34689999999999999999999887  899999764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.81  E-value=0.0015  Score=46.97  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      ...|.|||.|..|.++|..|++.|.  +|.++|+++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            3589999999999999999999999  899999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.79  E-value=0.0012  Score=46.43  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|+|||||..|+..|..|.+.|.+|+|+++..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4579999999999999999999999999999864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.78  E-value=0.00083  Score=45.64  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEE-EeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLV-LEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~v-ie~~~~   39 (184)
                      ++.+|.|||+|..|.++|..|++.|.+|++ +++++.
T Consensus        22 ~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           22 SMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             GSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            345899999999999999999999999998 787653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.75  E-value=0.0023  Score=45.85  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|.|||+|..|...|..|++.|.+|+++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998653

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.74  E-value=0.0016  Score=46.99  Aligned_cols=38  Identities=34%  Similarity=0.523  Sum_probs=32.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      |++...+|.|||+|..|.++|+.|++.|.  +++++|.+.
T Consensus         1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            1 MNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            65455689999999999999999999887  799999753

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.74  E-value=0.0017  Score=45.75  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +|.|||+|..|..+|..|++.|.+|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            589999999999999999999999999998754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.71  E-value=0.0021  Score=43.26  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|.|||+|..|.++|..|++.|.+|+++++.+.
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4799999999999999999999999999998754

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.71  E-value=0.002  Score=46.41  Aligned_cols=37  Identities=19%  Similarity=0.405  Sum_probs=32.2

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      |+..+|.|||+|..|.++|+.|+..++ +++++|....
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            455689999999999999999999988 9999998653

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.71  E-value=0.00092  Score=49.00  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|.|||+|..|..+|..|++.|.+|+++++.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999863

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.67  E-value=0.0024  Score=45.99  Aligned_cols=34  Identities=15%  Similarity=0.399  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ..+|+|||+|..|..+|..|++.|+ +|+++|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            4589999999999999999999998 899999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.63  E-value=0.0019  Score=44.83  Aligned_cols=34  Identities=29%  Similarity=0.410  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ..+|+|||+|..|..+|..|++.|. +++|+|++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            3589999999999999999999998 799999875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.63  E-value=0.0015  Score=46.98  Aligned_cols=33  Identities=18%  Similarity=0.102  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLG-VEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~   38 (184)
                      .+|.|||.|..|..+|..|++.| .+|+++|+.+
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            57999999999999999999999 9999999975

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.63  E-value=0.0021  Score=48.51  Aligned_cols=34  Identities=29%  Similarity=0.560  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|.|||+|..|...|..|++.|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            5799999999999999999999999999998754

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.61  E-value=0.0024  Score=44.14  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|.|||.|..|.++|..|++.|.+|+++++++.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            46899999999999999999999999999998653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.60  E-value=0.0023  Score=47.71  Aligned_cols=34  Identities=32%  Similarity=0.373  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|+|||.|..|..+|..|.+.|++|+++|+++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3479999999999999999999999999999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.58  E-value=0.0025  Score=45.77  Aligned_cols=33  Identities=27%  Similarity=0.471  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      .+|+|||+|..|..+|..|++.|.  +|+++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999998  899999864

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.58  E-value=0.002  Score=49.03  Aligned_cols=33  Identities=30%  Similarity=0.568  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|.|||.|..|+.+|..|++.|.+|+++|++.
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            589999999999999999999999999999864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.58  E-value=0.0022  Score=48.64  Aligned_cols=33  Identities=24%  Similarity=0.519  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|.|||+|..|..+|..|++.|++|+++|+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.58  E-value=0.0023  Score=48.58  Aligned_cols=35  Identities=17%  Similarity=0.353  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC-CC-CeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRL-GV-EPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~-g~-~v~vie~~~~   39 (184)
                      ..+|.|||.|..|+.+|..|++. |+ +|+++|+++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            35899999999999999999999 99 9999999865

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.57  E-value=0.0024  Score=47.31  Aligned_cols=35  Identities=26%  Similarity=0.478  Sum_probs=31.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|+|||+|.+|+.+|..|...|.+|+++|+.+.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            35899999999999999999999999999998764

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.57  E-value=0.0021  Score=45.61  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +..|.|||.|..|...|..|+ .|++|+++|+.+
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            458999999999999999999 999999999864

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.57  E-value=0.0059  Score=46.22  Aligned_cols=40  Identities=35%  Similarity=0.709  Sum_probs=35.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~~~~~   43 (184)
                      +.+||+|||+|++|+++|+.|++.|. +|+|+|+.+.+++.
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~   43 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR   43 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCc
Confidence            46899999999999999999999998 89999998877654

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.56  E-value=0.0027  Score=47.76  Aligned_cols=36  Identities=36%  Similarity=0.506  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      ...|.|||.|.+|+++|..|+++|.+|+++|.....
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            357999999999999999999999999999986543

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.56  E-value=0.0024  Score=48.63  Aligned_cols=35  Identities=17%  Similarity=0.382  Sum_probs=31.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+.+|.|||.|..|..+|..|++.|.+|.++++.+
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            35689999999999999999999999999999864

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.56  E-value=0.0031  Score=47.97  Aligned_cols=35  Identities=17%  Similarity=0.362  Sum_probs=32.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+.+|.|||.|..|..+|..|++.|++|+++++.+
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            44689999999999999999999999999999875

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.56  E-value=0.002  Score=46.22  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~   37 (184)
                      ..+|.|||.|..|..+|..|++.|+ +|+++|+.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4589999999999999999999999 99999985

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.55  E-value=0.0029  Score=44.72  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=30.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|.|||+ |..|..+|..|.+.|.+|+++++.+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            47999999 9999999999999999999999853

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.52  E-value=0.0034  Score=45.22  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      |+...|.|||+|..|.++|+.|++.++ +++++|...
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            345689999999999999999999888 999999865

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.52  E-value=0.0012  Score=49.93  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|+|+|-.|..+|..|..+|.+|+|+|+++
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            379999999999999999999999999999875

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.52  E-value=0.0044  Score=43.54  Aligned_cols=37  Identities=32%  Similarity=0.417  Sum_probs=32.1

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |+|  ..|+|.|+|..|..++..|.+.|.+|+++.|...
T Consensus         1 M~~--~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            1 MSL--SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             -CC--CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCC--CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            554  4799999999999999999999999999998743

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.51  E-value=0.0034  Score=44.95  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+|.|||.|..|..+|..|++.|++|+++|+.+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.49  E-value=0.0029  Score=45.22  Aligned_cols=32  Identities=31%  Similarity=0.392  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|||+|..|.+.|..|+ .|.+|++++|..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            37999999999999999999 999999999864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.48  E-value=0.0022  Score=45.58  Aligned_cols=37  Identities=24%  Similarity=0.360  Sum_probs=31.0

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |++ ..+|.|||+|..|...|..|.+.|.+|+++++++
T Consensus         1 M~~-~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            1 MEK-SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             ----CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCC-CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            553 4589999999999999999999999999999864

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.48  E-value=0.0041  Score=43.88  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC---CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV---EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~---~v~vie~~~   38 (184)
                      +..|.|||+|..|.++|..|.+.|+   +|.++|+++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            4579999999999999999999998   899999865

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.47  E-value=0.0013  Score=41.53  Aligned_cols=33  Identities=12%  Similarity=0.176  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..++|||+|..|..+|..|.+.|.+|+++++..
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            479999999999999999999999999999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.46  E-value=0.0032  Score=45.52  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+|.|||+|..|.++|..|++.|.+|+++++.+
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4689999999999999999999999999999853

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.45  E-value=0.0028  Score=44.92  Aligned_cols=34  Identities=32%  Similarity=0.463  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            5689999999999999999999998 799999875

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.44  E-value=0.0026  Score=46.75  Aligned_cols=35  Identities=26%  Similarity=0.466  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|+|||+|.+|+.+|..|...|.+|+++|+.+.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35899999999999999999999999999998753

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.43  E-value=0.004  Score=44.98  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .+|.|||+|..|..+|..|++.|+ +|+++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            479999999999999999999998 999999875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.43  E-value=0.0029  Score=46.25  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+|.|||.|..|..+|..|++.|++|+++++.+
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4589999999999999999999999999999864

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.43  E-value=0.0036  Score=43.54  Aligned_cols=36  Identities=17%  Similarity=0.132  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC----CCeEEEeccCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLG----VEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g----~~v~vie~~~~~   40 (184)
                      ..+|.|||+|..|...|..|.+.|    .+|.++++.+..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~   43 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN   43 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc
Confidence            347999999999999999999998    689999987653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.41  E-value=0.0039  Score=46.99  Aligned_cols=34  Identities=24%  Similarity=0.509  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..+.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5799999999999999999999999999999765

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=96.39  E-value=0.0044  Score=45.30  Aligned_cols=34  Identities=21%  Similarity=0.510  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|+|+|||..|..+|+.+++.|++|+++|.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3799999999999999999999999999998654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.35  E-value=0.0058  Score=41.28  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+.|||+|..|...|..|.+.|.+|.+++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.33  E-value=0.0029  Score=44.93  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|.|||+|..|..+|..|.+.|.+|.++++.+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            379999999999999999999999999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.29  E-value=0.0048  Score=43.58  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +|.|||.|..|..+|..|++.|++|+++++++.
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999998754

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.28  E-value=0.0036  Score=44.22  Aligned_cols=33  Identities=27%  Similarity=0.371  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +|.|||.|..|..+|..|++.|++|+++|+++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            799999999999999999999999999998754

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.27  E-value=0.0046  Score=44.19  Aligned_cols=32  Identities=28%  Similarity=0.553  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      +|+|||+|..|..+|..|++.|.  +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            68999999999999999999998  899999864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.26  E-value=0.0046  Score=44.74  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            4689999999999999999999998 699999865

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.24  E-value=0.0045  Score=44.49  Aligned_cols=31  Identities=32%  Similarity=0.439  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      .+|+|||+|..|.++|..|++.|.+|+++ ++
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            47999999999999999999999999999 64

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.22  E-value=0.0053  Score=46.65  Aligned_cols=34  Identities=15%  Similarity=0.349  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +.+|.|||.|..|..+|..|++.|.+|.++++.+
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4589999999999999999999999999999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.21  E-value=0.0044  Score=46.43  Aligned_cols=32  Identities=22%  Similarity=0.432  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|.|||.|..|+.+|..|++ |.+|+++|+++
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            479999999999999999998 99999999865

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.21  E-value=0.0033  Score=47.71  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRL--GVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~   38 (184)
                      .+|.|||.|..|+.+|..|++.  |.+|+++|++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4899999999999999999998  78999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.21  E-value=0.0048  Score=45.19  Aligned_cols=33  Identities=27%  Similarity=0.448  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|+|+|+|.+|+.++..|+..|.+|+++++.+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.21  E-value=0.0037  Score=45.08  Aligned_cols=30  Identities=33%  Similarity=0.368  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      +|.|||+|..|..+|..|++.|.+|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            589999999999999999999999999998

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.20  E-value=0.0041  Score=43.16  Aligned_cols=34  Identities=35%  Similarity=0.524  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4689999999999999999999998 689998865

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.20  E-value=0.004  Score=46.76  Aligned_cols=34  Identities=18%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +..++|||.|..||.+|..|++.|++|+.+|-+.
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            4689999999999999999999999999999764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.20  E-value=0.0027  Score=46.25  Aligned_cols=35  Identities=23%  Similarity=0.188  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC-------CCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLG-------VEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g-------~~v~vie~~~~   39 (184)
                      ..+|.|||+|..|.++|..|++.|       .+|.++++.+.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            347999999999999999999998       89999998654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.19  E-value=0.0033  Score=47.23  Aligned_cols=32  Identities=28%  Similarity=0.360  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|.|||.|..|+.+|..|++.|.+|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.0067  Score=46.39  Aligned_cols=34  Identities=18%  Similarity=0.279  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|.|||.|..|..+|..|++.|++|+++++.+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999865

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.19  E-value=0.0047  Score=41.78  Aligned_cols=38  Identities=29%  Similarity=0.344  Sum_probs=31.5

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |++ +..|+|.|| |..|..++..|.++|.+|+++.|.+.
T Consensus         1 M~~-m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            1 MEK-VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             --C-CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CCC-CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            653 357999995 99999999999999999999998754

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.19  E-value=0.0058  Score=43.91  Aligned_cols=38  Identities=32%  Similarity=0.545  Sum_probs=31.6

Q ss_pred             CCCc-cccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            1 MAMV-EKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         1 m~~~-~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      |++. ...|+|||+|..|.++|+.|++.+.  +++++|.+.
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            5543 3589999999999999999988775  799999864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.18  E-value=0.0051  Score=45.73  Aligned_cols=34  Identities=35%  Similarity=0.498  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|+|||+|.+|+.+|..|...|.+|+++|+...
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5799999999999999999999999999998653

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.17  E-value=0.0053  Score=44.15  Aligned_cols=35  Identities=26%  Similarity=0.477  Sum_probs=30.3

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCC--CeEEEecc
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKS   37 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~   37 (184)
                      |+..+|+|||+|..|.++|+.|+..+.  ++.++|.+
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            345699999999999999999998875  79999865

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.16  E-value=0.006  Score=43.90  Aligned_cols=34  Identities=24%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC----CCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLG----VEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g----~~v~vie~~~   38 (184)
                      ..+|.|||+|..|.++|..|.+.|    .+|+++++..
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            347999999999999999999999    7899999865

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.13  E-value=0.0047  Score=44.40  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|.|||.|..|..+|..|++.|.+|+++|+.+
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            479999999999999999999999999999865

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.12  E-value=0.0079  Score=43.37  Aligned_cols=35  Identities=26%  Similarity=0.141  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHH-HHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLA-TALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~-~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|.|||.|.+|++ +|..|.++|.+|.+.|+...
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            357999999999996 88999999999999998653

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.11  E-value=0.0041  Score=44.26  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=27.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+|-+||-|..|..+|..|.+.|++|+++|+.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3699999999999999999999999999998754

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.09  E-value=0.0042  Score=47.31  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRL--GVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~   38 (184)
                      .+|.|||.|..|+.+|..|++.  |.+|+++|++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999998  78999999864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.09  E-value=0.0077  Score=40.39  Aligned_cols=32  Identities=34%  Similarity=0.494  Sum_probs=29.5

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIG-AGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +++||| +|..|..+|..|.+.|.+|.+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999 99999999999999999999999864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.09  E-value=0.0064  Score=44.93  Aligned_cols=35  Identities=29%  Similarity=0.504  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|+|+|+|.+|+.+|..+...|.+|+++|+.+.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998754

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=96.09  E-value=0.0014  Score=44.81  Aligned_cols=37  Identities=24%  Similarity=0.201  Sum_probs=31.6

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      |.....+|.|||.|..|.++|..|++.|++|+.+++.
T Consensus         2 ~~~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            2 MQAPRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             -CCCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CCCCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            4334458999999999999999999999999999874

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.07  E-value=0.0074  Score=43.83  Aligned_cols=33  Identities=21%  Similarity=0.287  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|.|||.|..|.++|..|.+.|.+|.++|+++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999865

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.07  E-value=0.009  Score=41.89  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|+|+|.+|.++|..|++.|.+|++++|..
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3579999999999999999999999999998863

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.07  E-value=0.0076  Score=43.15  Aligned_cols=33  Identities=33%  Similarity=0.475  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .+|+|||+|..|..+|..|+..|. +++++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            479999999999999999999986 899999764

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=96.07  E-value=0.01  Score=42.17  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=30.4

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIG-AGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|.||| .|..|.++|..|++.|.+|.++++++
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            3799999 99999999999999999999999864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.05  E-value=0.01  Score=39.28  Aligned_cols=34  Identities=35%  Similarity=0.494  Sum_probs=30.8

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..++|.|+ |..|..++..|.++|.+|+++.|.+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            47999998 99999999999999999999998653

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.05  E-value=0.008  Score=42.10  Aligned_cols=34  Identities=35%  Similarity=0.513  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..++|||+|-+|.++|+.|.+.|.+|+|+.|...
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999999999999999999988999998754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.05  E-value=0.0032  Score=43.04  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...++|+|+|..|..+|..|.+.|. |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            3479999999999999999999999 999998753

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.05  E-value=0.006  Score=44.54  Aligned_cols=34  Identities=26%  Similarity=0.513  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            4689999999999999999999998 799999865

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.02  E-value=0.0083  Score=44.15  Aligned_cols=35  Identities=31%  Similarity=0.411  Sum_probs=31.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ....|+|+|+|.+|..+|..|...|. +|.++|+.-
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            35689999999999999999999999 899999863

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=96.01  E-value=0.005  Score=45.77  Aligned_cols=31  Identities=19%  Similarity=0.357  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|.|||.|..|+.+|..|++ |.+|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            58999999999999999999 99999999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.01  E-value=0.0089  Score=41.91  Aligned_cols=33  Identities=15%  Similarity=0.170  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|+|.|+|..|..++..|.++|.+|+++.|.+
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            479999999999999999999999999999865

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=96.00  E-value=0.0056  Score=44.25  Aligned_cols=37  Identities=22%  Similarity=0.192  Sum_probs=30.1

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCC-------CeEEEecc
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGV-------EPLVLEKS   37 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~-------~v~vie~~   37 (184)
                      |+++..+|+|+|+ |..|..++..|...+.       ++.++|..
T Consensus         1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            5544568999998 9999999999998875       79999876

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=95.99  E-value=0.011  Score=43.47  Aligned_cols=35  Identities=29%  Similarity=0.471  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|+|+|+|..|..++..+.+.|++|+++|..+.
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            45799999999999999999999999999997643

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.98  E-value=0.008  Score=45.70  Aligned_cols=35  Identities=34%  Similarity=0.594  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      .+++|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            47999999999999999999999999999997754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.97  E-value=0.0072  Score=44.38  Aligned_cols=33  Identities=27%  Similarity=0.458  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|+|+|+|..|..+|..|+..|.+|+++|+.+
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            579999999999999999999999999999864

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=95.97  E-value=0.0067  Score=45.51  Aligned_cols=56  Identities=20%  Similarity=0.157  Sum_probs=41.6

Q ss_pred             HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      ..+.+.|.+.+.  |++++++++|+++...+   .. +.....+|+++.||.||.|+|.++.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~---~~-v~~v~~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIMEN---GK-VVGVKSEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEET---TE-EEEEEETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEeC---CE-EEEEEECCeEEECCEEEECCCCCcc
Confidence            356666665543  88999999999998765   33 3333357788999999999998864

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=95.96  E-value=0.0087  Score=41.29  Aligned_cols=33  Identities=18%  Similarity=0.298  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC----CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV----EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~----~v~vie~~~   38 (184)
                      ..|.|||+|..|...|..|.+.|+    +|.++++++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            479999999999999999999998    999999864

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.96  E-value=0.01  Score=40.39  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=31.0

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|+|.|| |..|..++..|.++|.+|+++.|..
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            457999998 9999999999999999999999865

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.94  E-value=0.0085  Score=42.90  Aligned_cols=32  Identities=31%  Similarity=0.500  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhC--CCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRL--GVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~   38 (184)
                      +|+|||+|..|..+|..|++.  +.+|+++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            689999999999999999985  67899999875

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=95.94  E-value=0.0082  Score=48.07  Aligned_cols=33  Identities=33%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|.|||+|..|..+|..|++.|++|+++|+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999865

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.93  E-value=0.0076  Score=41.99  Aligned_cols=33  Identities=33%  Similarity=0.438  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVE-PLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~   38 (184)
                      ..|.|||+|..|...|..|++.|.+ |.++++++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            5799999999999999999999998 88998854

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.92  E-value=0.0073  Score=42.38  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|.|||+|..|.++|..|.+.|.+|.++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999998764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.91  E-value=0.0098  Score=43.69  Aligned_cols=34  Identities=32%  Similarity=0.461  Sum_probs=31.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEecc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~   37 (184)
                      +...|+|+|+|.+|..+|..|...|. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            45689999999999999999999998 79999986

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.90  E-value=0.0073  Score=44.41  Aligned_cols=34  Identities=15%  Similarity=0.089  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC-------CCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLG-------VEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g-------~~v~vie~~~~   39 (184)
                      .+|.|||+|..|.++|..|++.|       .+|+++++.+.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            37999999999999999999998       89999998654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=95.90  E-value=0.0071  Score=43.50  Aligned_cols=32  Identities=31%  Similarity=0.484  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      +|.|||+|..|.++|..|++.|.  +|+++|++.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            58999999999999999999998  899999863

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=95.89  E-value=0.013  Score=43.26  Aligned_cols=33  Identities=39%  Similarity=0.537  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|+|+|+|..|..+|..+.+.|++|+++|..+
T Consensus        15 k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           15 KTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            479999999999999999999999999999764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.87  E-value=0.012  Score=45.76  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      .+++|+|+|..|..+|..|.+.|.+|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            47999999999999999999999999999998754

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.85  E-value=0.012  Score=43.97  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|+|+|+|..|..++..+.+.|++|.++|..+
T Consensus        35 ~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           35 GAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4579999999999999999999999999998754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.85  E-value=0.0088  Score=44.06  Aligned_cols=34  Identities=38%  Similarity=0.505  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|+|+|+|..|..+|..++..|.+|+++|+..
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3579999999999999999999999999999864

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.84  E-value=0.012  Score=41.46  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      ...++|+|+|-+|.++|..|.+.|. +|+|+.|...
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            3579999999999999999999998 8999998653

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.82  E-value=0.012  Score=44.88  Aligned_cols=33  Identities=18%  Similarity=0.366  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|.|||.|..|..+|..|++.|.+|.++++.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.81  E-value=0.0095  Score=42.14  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|.|||.|..|..+|..|.+.|.+|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999864

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=95.80  E-value=0.011  Score=44.34  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        40 ~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~   74 (434)
T 1tt5_B           40 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   74 (434)
T ss_dssp             TCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            4689999999999999999999998 799999764

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=95.80  E-value=0.0074  Score=41.94  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLG-VEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~   38 (184)
                      .|.|||+|..|...|..|++.| .+|.++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            5899999999999999999999 8999999864

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.79  E-value=0.0098  Score=41.79  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      .|.|||+|..|.++|..|++.|.  +|+++|+++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            69999999999999999999998  899998864

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=95.79  E-value=0.024  Score=42.11  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=41.9

Q ss_pred             HHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          107 KKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       107 ~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      ..+.+.+.+.. +.+++++++|+++...+   +. +.|.+.+|+ +.||.||.|++....
T Consensus       206 ~~l~~~l~~~l-~~~v~~~~~V~~i~~~~---~~-v~v~~~~g~-~~ad~Vv~a~~~~~~  259 (424)
T 2b9w_A          206 QAMFEHLNATL-EHPAERNVDITRITRED---GK-VHIHTTDWD-RESDVLVLTVPLEKF  259 (424)
T ss_dssp             HHHHHHHHHHS-SSCCBCSCCEEEEECCT---TC-EEEEESSCE-EEESEEEECSCHHHH
T ss_pred             HHHHHHHHHhh-cceEEcCCEEEEEEEEC---CE-EEEEECCCe-EEcCEEEECCCHHHH
Confidence            45666666665 45789999999998765   34 778888875 899999999998643

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.78  E-value=0.01  Score=42.18  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...++|||+|.+|.++|..|.+.|. +|+|++|..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999998 899999864

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.76  E-value=0.015  Score=40.34  Aligned_cols=32  Identities=38%  Similarity=0.524  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .++|||+|-+|.++++.|.+.|. +|+|++|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            79999999999999999999998 899999864

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=95.75  E-value=0.0084  Score=43.63  Aligned_cols=34  Identities=24%  Similarity=0.280  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~   70 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ   70 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            5689999999999999999999999 799999765

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.74  E-value=0.008  Score=43.50  Aligned_cols=36  Identities=22%  Similarity=0.221  Sum_probs=31.6

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +...|+|.|| |..|..++..|.++|.+|++++|...
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4468999996 99999999999999999999998543

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.74  E-value=0.01  Score=41.78  Aligned_cols=31  Identities=32%  Similarity=0.402  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|.|||+|..|...|..|.+ |.+|+++++++
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            69999999999999999999 99999999864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=95.74  E-value=0.013  Score=46.59  Aligned_cols=35  Identities=23%  Similarity=0.195  Sum_probs=31.7

Q ss_pred             ccEEEEC--CCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            6 KDVVIIG--AGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         6 ~dv~IiG--gG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      .+|+|||  +|.+|+-+|..|++.|.+|+++++.+..
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l  560 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQV  560 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccc
Confidence            3699999  9999999999999999999999987654

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.73  E-value=0.012  Score=44.63  Aligned_cols=34  Identities=35%  Similarity=0.391  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|+|+|..|..+|..|+..|.+|++.|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3579999999999999999999999999999854

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.72  E-value=0.016  Score=42.15  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=29.3

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCC--CeEEEecc
Q 030042            5 EKDVVIIGA-GIAGLATALALKRLGV--EPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGg-G~~Gl~~A~~l~~~g~--~v~vie~~   37 (184)
                      ..+|+|||+ |..|.++|+.+...|.  +++++|.+
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            458999997 9999999999998885  79999975

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.72  E-value=0.011  Score=44.67  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ...|+|||||..|...+..|.+.|.+|+|+++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            457999999999999999999999999999975

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.72  E-value=0.0089  Score=42.21  Aligned_cols=34  Identities=35%  Similarity=0.490  Sum_probs=29.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~   38 (184)
                      ...|.|||+|..|..+|..|++.  +.+|.++|+++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            35799999999999999999987  56899998753

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.71  E-value=0.015  Score=41.28  Aligned_cols=35  Identities=31%  Similarity=0.345  Sum_probs=31.8

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|+|.|| |..|..++..|.++|.+|++++|...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            458999999 99999999999999999999998654

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.69  E-value=0.01  Score=46.08  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~  361 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  361 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            4689999999999999999999998 799999764

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=95.69  E-value=0.0074  Score=44.81  Aligned_cols=29  Identities=28%  Similarity=0.252  Sum_probs=27.4

Q ss_pred             cEEEECCCHHHHHHHHHHHh-CCCCeEEEe
Q 030042            7 DVVIIGAGIAGLATALALKR-LGVEPLVLE   35 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~-~g~~v~vie   35 (184)
                      +|.|||+|..|.++|..|++ .|.+|++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            79999999999999999988 499999999

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.68  E-value=0.011  Score=44.98  Aligned_cols=32  Identities=28%  Similarity=0.507  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|.|||.|..|..+|..|++.|.+|.++++.+
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999854

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.67  E-value=0.0097  Score=42.54  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC--CCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLG--VEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~   38 (184)
                      +|+|||+|..|.++|..|++.|  .+|+++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6999999999999999999988  5899999864

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.66  E-value=0.011  Score=46.04  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            4689999999999999999999998 799999875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.65  E-value=0.01  Score=41.60  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|+|+|-+|.++|..|++.|.+|+|++|..
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3479999999999999999999999999999864

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=95.64  E-value=0.009  Score=45.06  Aligned_cols=55  Identities=18%  Similarity=0.120  Sum_probs=41.1

Q ss_pred             HHHHHHHhhCC--CCeeeeCceEEEEecc--CCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042          108 KLLQTLADELP--NGTIHFSSKIAAIDSQ--THDGSSPVFIHLVDGTIVKTKFLIGCDGIHST  166 (184)
Q Consensus       108 ~l~~~l~~~~~--~~~i~~~~~v~~~~~~--~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~  166 (184)
                      .+.+.|.+.+.  |++++++++|+++...  +  +.. +.|.+ +|+++.||.||.|+|.++.
T Consensus       243 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~--~~~-~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          243 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDT--GKF-EGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTT--TEE-EEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEECCC--CeE-EEEEE-CCeEEECCEEEECCCccch
Confidence            55566655543  8899999999999876  4  232 45655 5778999999999998863

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.63  E-value=0.017  Score=40.48  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=31.0

Q ss_pred             CC-CccccEEEECC---CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MA-MVEKDVVIIGA---GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~-~~~~dv~IiGg---G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |+ +....++|.||   |-.|..+|..|+++|.+|++++++.
T Consensus         1 M~~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~   42 (275)
T 2pd4_A            1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   42 (275)
T ss_dssp             -CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            55 33456899997   5889999999999999999999875

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.61  E-value=0.023  Score=41.36  Aligned_cols=39  Identities=23%  Similarity=0.243  Sum_probs=32.1

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |+|....|+|.|+ |..|..++..|.++|.+|+++.|+..
T Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   40 (352)
T 1xgk_A            1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK   40 (352)
T ss_dssp             --CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            6654567999996 99999999999999999999998654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.61  E-value=0.017  Score=38.64  Aligned_cols=32  Identities=31%  Similarity=0.342  Sum_probs=29.4

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|+|.|| |..|..++..|.++|.+|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            4899996 9999999999999999999999874

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.60  E-value=0.012  Score=40.12  Aligned_cols=36  Identities=17%  Similarity=0.255  Sum_probs=31.1

Q ss_pred             ccccEEEEC-CCHHHHHHHHHHHhCC-CCeEEEeccCC
Q 030042            4 VEKDVVIIG-AGIAGLATALALKRLG-VEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiG-gG~~Gl~~A~~l~~~g-~~v~vie~~~~   39 (184)
                      ++..|+|.| +|..|..++..|.++| .+|+++.|+..
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~   59 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPA   59 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGG
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChh
Confidence            345799999 5999999999999999 89999998753

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=95.59  E-value=0.01  Score=47.40  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|.|||+|..|...|..|++.|++|+++|+++
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            479999999999999999999999999999865

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.59  E-value=0.024  Score=38.16  Aligned_cols=34  Identities=15%  Similarity=0.121  Sum_probs=29.9

Q ss_pred             ccEEEECC-CHHHHHHHHHHH-hCCCCeEEEeccCC
Q 030042            6 KDVVIIGA-GIAGLATALALK-RLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGg-G~~Gl~~A~~l~-~~g~~v~vie~~~~   39 (184)
                      ..++|.|| |..|..+|..|+ +.|.+|+++.|+..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~   41 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK   41 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence            35999995 999999999999 89999999998654

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=95.58  E-value=0.022  Score=38.88  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=29.7

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|.|| |..|..+|..|+++|.+|++++++.
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 3d3w_A            7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            356899987 7999999999999999999998853

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=95.57  E-value=0.02  Score=42.11  Aligned_cols=38  Identities=26%  Similarity=0.517  Sum_probs=32.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |+.....|+|+|+|..|...+..+.+.|++|.+++..+
T Consensus         7 m~~~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~   44 (391)
T 1kjq_A            7 LRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA   44 (391)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence            44345689999999999999999999999999998754

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.55  E-value=0.01  Score=42.17  Aligned_cols=32  Identities=19%  Similarity=0.207  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      +|.|||+|..|.++|+.|++.+.  +++++|+.+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            58999999999999999999887  899999864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.54  E-value=0.0095  Score=44.66  Aligned_cols=34  Identities=24%  Similarity=0.519  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+..|||.|..|+.+|..|++.|++|+++|+++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4688999999999999999999999999998753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.53  E-value=0.013  Score=41.75  Aligned_cols=33  Identities=27%  Similarity=0.605  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      .+|.|||+|..|..+|+.|+..|+  +++++|.+.
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            579999999999999999998888  899999865

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=95.52  E-value=0.019  Score=41.63  Aligned_cols=33  Identities=45%  Similarity=0.478  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|.|||.|..|.++|..|++.|.+|++.++..
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            469999999999999999999999999999864

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.52  E-value=0.014  Score=41.97  Aligned_cols=33  Identities=27%  Similarity=0.569  Sum_probs=29.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--CeEEEecc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV--EPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~   37 (184)
                      ..+|+|||+|..|.++|+.|+..+.  ++.++|.+
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            4689999999999999999998776  79999975

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=95.51  E-value=0.029  Score=38.62  Aligned_cols=38  Identities=26%  Similarity=0.510  Sum_probs=31.6

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCC-eEEEeccC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVE-PLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~-v~vie~~~   38 (184)
                      |+++...++|.|| |..|..+|..|+++|.+ |+++++..
T Consensus         1 m~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~   40 (254)
T 1sby_A            1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCc
Confidence            6666667899986 67799999999999997 88998865

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.50  E-value=0.02  Score=41.07  Aligned_cols=33  Identities=30%  Similarity=0.354  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEecc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~   37 (184)
                      ...++|+|+|-+|.++|..|++.|. +|+|+.|.
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            3579999999999999999999998 79999987

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.49  E-value=0.024  Score=41.18  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=30.8

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHh--CCCCeEEEeccCC
Q 030042            4 VEKDVVIIGA-GIAGLATALALKR--LGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGg-G~~Gl~~A~~l~~--~g~~v~vie~~~~   39 (184)
                      ....|+|.|| |..|..++..|.+  .|.+|+++++...
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            3457999976 9999999999999  8999999998543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.47  E-value=0.024  Score=40.00  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=30.4

Q ss_pred             cccEEEEC-CCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIG-AGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|+| +|.+|.++|..|++.|.+|++++|..
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            35799999 89999999999999999999999853

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=95.47  E-value=0.018  Score=40.74  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|+|+|-.|.++|..|++.| +|++++|..
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            347999999999999999999999 999998853

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=95.46  E-value=0.029  Score=38.61  Aligned_cols=39  Identities=31%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |+++...++|.|+ |-.|..+|..|+++|.+|++++++..
T Consensus         3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   42 (250)
T 2fwm_X            3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT   42 (250)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchh
Confidence            4444456888886 67899999999999999999998754

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.45  E-value=0.014  Score=41.06  Aligned_cols=33  Identities=27%  Similarity=0.478  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..++|||+|.+|.++|..|.+.|.+|+++++..
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            479999999999999999999999999999863

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.42  E-value=0.019  Score=40.80  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...+.|||.|..|..+|..|...|.+|+++++..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3579999999999999999999999999999864

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.42  E-value=0.02  Score=40.65  Aligned_cols=34  Identities=24%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...+.|||.|..|..+|..|...|.+|+++++..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999999999999999864

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.39  E-value=0.021  Score=40.35  Aligned_cols=34  Identities=38%  Similarity=0.384  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...++|+|+|-+|.+++..|++.|. +|+|++|..
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            4579999999999999999999998 699998864

>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9

Probab=95.39  E-value=0.021  Score=41.06  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|.|+||| .|+.++..+.+.|++|+++|+.+
T Consensus         4 ~I~~lGsg-l~~~~~~aAk~lG~~viv~d~~~   34 (320)
T 2pbz_A            4 IVSTIASH-SSLQILLGAKKEGFKTRLYVSPK   34 (320)
T ss_dssp             CEEEESST-THHHHHHHHHHTTCCEEEEECTT
T ss_pred             EEEEEcCH-hHHHHHHHHHHCCCEEEEEECCC
Confidence            49999999 99999999999999999999873

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.39  E-value=0.028  Score=41.19  Aligned_cols=35  Identities=23%  Similarity=0.224  Sum_probs=31.2

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|+|.|| |..|..++..|.++|.+|++++|...
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   64 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   64 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            357999998 99999999999999999999998653

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.38  E-value=0.022  Score=38.31  Aligned_cols=32  Identities=31%  Similarity=0.494  Sum_probs=29.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|+|.|| |..|..++..|.++|.+|+++.|..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4999998 9999999999999999999999864

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.38  E-value=0.021  Score=40.73  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=30.6

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|+|.|+ |..|..++..|.+.|.+|+++.|+..
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            37999996 99999999999999999999998764

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=95.38  E-value=0.014  Score=41.99  Aligned_cols=36  Identities=22%  Similarity=0.238  Sum_probs=30.4

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCC-------CeEEEecc
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGV-------EPLVLEKS   37 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~-------~v~vie~~   37 (184)
                      |++ ...|+|+|| |..|..++..|.+.|.       +|+++|+.
T Consensus         1 m~~-~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            1 MKA-PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             CCC-CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CCC-CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence            553 347999998 9999999999998886       79999875

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=95.37  E-value=0.021  Score=39.64  Aligned_cols=38  Identities=24%  Similarity=0.359  Sum_probs=29.5

Q ss_pred             CCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            2 AMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         2 ~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ++....++|.|| |-.|..+|..|+++|.+|++++++..
T Consensus        24 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   62 (260)
T 3gem_A           24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH   62 (260)
T ss_dssp             ---CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            333446888886 67899999999999999999998753

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=95.37  E-value=0.029  Score=38.26  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=30.4

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +...++|.|| |..|..+|..|+++|.+|++++++.
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   41 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3457899988 7899999999999999999999864

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.35  E-value=0.017  Score=43.55  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|+|+|+|..|..+|..|++.|.+|+++++..
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~   36 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   36 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCH
Confidence            3479999999999999999999999999999853

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=95.34  E-value=0.016  Score=40.16  Aligned_cols=33  Identities=27%  Similarity=0.220  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|.|||.|..|...|..|.+.|.+|.++++++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            479999999999999999999998999999864

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=95.33  E-value=0.016  Score=40.60  Aligned_cols=38  Identities=24%  Similarity=0.116  Sum_probs=29.8

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |++....++|.|| |..|..+|..|+++|.+|+++++..
T Consensus         1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   39 (281)
T 3m1a_A            1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRT   39 (281)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6655556788876 7889999999999999999999865

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.32  E-value=0.02  Score=42.48  Aligned_cols=31  Identities=26%  Similarity=0.427  Sum_probs=29.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEe
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLE   35 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie   35 (184)
                      ...|+|+|||..|..++..+.+.|++|.++|
T Consensus        24 ~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d   54 (403)
T 3k5i_A           24 SRKVGVLGGGQLGRMLVESANRLNIQVNVLD   54 (403)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            5689999999999999999999999999999

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.32  E-value=0.023  Score=41.04  Aligned_cols=34  Identities=18%  Similarity=0.461  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      ...|.|||+|..|..+|+.|+..+.  +++++|...
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            4589999999999999999998887  799999753

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.29  E-value=0.024  Score=39.49  Aligned_cols=32  Identities=38%  Similarity=0.591  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .++|||+|..|.++|..|.+.|.+|+++++..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999863

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.29  E-value=0.021  Score=40.27  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...++|+|+|-+|.++++.|.+.|. +|+|+.|..
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3579999999999999999999998 899999864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=95.28  E-value=0.027  Score=39.75  Aligned_cols=34  Identities=21%  Similarity=0.159  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...++|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            4579999999999999999999997 899999864

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.27  E-value=0.018  Score=41.36  Aligned_cols=32  Identities=34%  Similarity=0.526  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      .|.|||+|..|..+|+.|++.++  +++++|...
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            58999999999999999998887  899999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	4e-23
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-21
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	9e-21
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	1e-17
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	2e-11
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	5e-11
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	8e-11
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	8e-11
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-10
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	5e-10
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	6e-10
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	8e-10
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	9e-10
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	1e-09
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	1e-09
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	1e-09
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	3e-09
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	4e-09
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	5e-09
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	5e-09
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	6e-09
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	7e-09
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	9e-09
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	1e-08
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	1e-08
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	2e-08
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	4e-08
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	4e-08
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	5e-08
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	9e-08
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	6e-07
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	7e-07
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	8e-07
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	9e-07
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	1e-06
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	2e-06
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	2e-06
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	2e-06
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	3e-06
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	4e-06
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	4e-06
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	4e-06
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	6e-06
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	8e-06
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	1e-05
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	2e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	2e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	3e-05
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	4e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	4e-05
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	1e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	2e-04
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	2e-04
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	3e-04
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	3e-04
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	3e-04
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	6e-04
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	6e-04
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	7e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	8e-04
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	0.002

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 91.2 bits (225), Expect = 4e-23
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 7/169 (4%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKS--DGLRGTGAAISFAPNAWLALDALGVSH 64
            V IIGAG +GL     L + G++ ++LE+   D + G   A          L   GV  
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR 63

Query: 65  KLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL--PNGTI 122
           ++A        + +        +      +   G       + ++ + L +       T 
Sbjct: 64  RMARDGLVHEGVEIAF---AGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATT 120

Query: 123 HFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWL 171
            + +    +     +     F    +   +   ++ GCDG H      +
Sbjct: 121 VYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSI 169

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 86.3 bits (212), Expect = 2e-21
 Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 15/175 (8%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEP-LVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK 65
           D++I GAGI GL+ ALAL + G+    +LE S  +R  G  I+  P A  AL  LG+   
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 62

Query: 66  LASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFI-----HRKKLLQTLADELPNG 120
           LA+   P + +   +  +GAT  +   G     + P++       +  LL  + + L   
Sbjct: 63  LAATAIPTHELRYID-QSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQ 121

Query: 121 TIHFSSKIAAIDSQTHDGSSPVFIHLVDGT----IVKTKFLIGCDGIHSTVAWWL 171
            +     +  I+    +    V I   DG      +    L+G DGIHS V   L
Sbjct: 122 AVRTGLGVERIE----ERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHL 172

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 84.4 bits (207), Expect = 9e-21
 Identities = 37/166 (22%), Positives = 55/166 (33%), Gaps = 14/166 (8%)

Query: 6   KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG-LRGTGAAISFAPNAWLALDALGVSH 64
             + ++G  I+GL  AL L+  GV+  V E+S   L G G  I   P     L   GV  
Sbjct: 5   DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL 64

Query: 65  KLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHF 124
              S+            G                +  RF     +   L +       H 
Sbjct: 65  DSISVPSSSMEYVDALTGERVGSVP---------ADWRFTSYDSIYGGLYELFGPERYHT 115

Query: 125 SSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWW 170
           S  +  +  Q  +      +   DGT  +  ++IG DG  S V   
Sbjct: 116 SKCLVGLS-QDSETVQ---MRFSDGTKAEANWVIGADGGASVVRKR 157

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 77.1 bits (188), Expect = 1e-17
 Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 25/175 (14%)

Query: 7   DVVIIGAGIAGLATALAL-----KRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALG 61
           DV+I+GAG AGL  A  L     ++  ++  +++K       G A         +L  LG
Sbjct: 9   DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLG 68

Query: 62  VSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRF----IHRKKLLQTLADEL 117
           ++ K+ S    ++ I++ N         +           R+    +H+ ++ + + D +
Sbjct: 69  LADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSI 128

Query: 118 PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLG 172
                                +       +    ++       D     V   L 
Sbjct: 129 ----------------AEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLR 167

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43
          DV+++GAG +GL     L+ LG    V+E +  + G 
Sbjct: 9  DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGV 45

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 58.2 bits (139), Expect = 5e-11
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDAL 60
          M +   D ++IG G+AGL  A+A ++ G+  +VL      R   AA      A L    +
Sbjct: 1  MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKM 60

Query: 61 G 61
           
Sbjct: 61 S 61

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.5 bits (137), Expect = 8e-11
 Identities = 10/53 (18%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 3  MVEK-DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAW 54
          M E+ DV+++G G+     +  +   G + L ++++    G  ++I+     +
Sbjct: 3  MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELY 55

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 57.0 bits (136), Expect = 8e-11
 Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 5/169 (2%)

Query: 5   EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSH 64
             DV++IG G +GL  A+     G   L+L+K + L    A              L    
Sbjct: 2   HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIV 61

Query: 65  KLASIYPPVNRISVTNLGTGATQE--TSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTI 122
           K           + +            +L  K  +    R        Q++ D L     
Sbjct: 62  KHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK 121

Query: 123 HFSSKI---AAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVA 168
               KI     +++  ++      + L  G +++T  ++   G  S   
Sbjct: 122 DLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQ 170

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWL 55
             V+++GAG AG   +LA K+ G   ++++K+    G     +   NA  
Sbjct: 19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVG 69

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 5e-10
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKL 66
          DVV++G GI+G+A A  L   G+  +VLE  D + G    +      ++ L        +
Sbjct: 1  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGG----SYV 56

Query: 67 ASIYPPVNRI 76
                + R+
Sbjct: 57 GPTQNRILRL 66

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 54.7 bits (130), Expect = 6e-10
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA 45
          DV+++GAG  G+A    L + GV+ L+++  D     G+
Sbjct: 5  DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS 43

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 54.4 bits (130), Expect = 8e-10
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
           D +I+G+G+ G   A  LK+L  + LV+EK + + G
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 9e-10
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISF 49
          DV+++G GI     +  L   G + L ++K D   G  A+++ 
Sbjct: 7  DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTL 49

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 54.4 bits (129), Expect = 1e-09
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
          K VVI+GAG+AGL+ A  L   G +  VLE S+   G
Sbjct: 31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 67

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 53.9 bits (128), Expect = 1e-09
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA 45
          DVV++G+G AG + A++    G + +++EK   + G   
Sbjct: 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 56

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
          K ++I+GAG +G      L   G +  ++++ D + G
Sbjct: 3  KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 39

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA 45
          DVVIIG+G AGLA A++ +  G + ++LEK     G   
Sbjct: 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 63

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 52.5 bits (124), Expect = 4e-09
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA 46
          + V+IG GI G A A  L +      + E       T +A
Sbjct: 6  EAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSA 45

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 52.4 bits (124), Expect = 5e-09
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
          +V ++G GI+GLA A  L+  G + ++LE S  L G
Sbjct: 2  NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG 37

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLA 56
          + + E D V+IGAG AG+  AL + + G    +L K    R    +        L 
Sbjct: 3  LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALG 58

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 52.1 bits (123), Expect = 6e-09
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
          K V +IGAG++GLA A  LK  G+   V E      G
Sbjct: 2  KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 38

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 7e-09
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42
            V+IIG+G++GLA A  L+  G++  +LE  D + G
Sbjct: 6  GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 42

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 51.6 bits (122), Expect = 9e-09
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 6  KDVVIIGAGIAGLATALALKR--LGVEPLVLEKSDGLRGT 43
          + + IIGAG +GL TA AL       +  + E+     G 
Sbjct: 5  RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 44

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 3  MVEKDVVIIGAGIAGLATALALKRLGVEP----LVLEKSDGLRGTGAA 46
          +VE D++IIG G +G   A               ++EK+   R    A
Sbjct: 19 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVA 66

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT--GAAISFAPNAW 54
          M   +K VV++G+G+ GL++AL L R G    +L +      +    A  +A   W
Sbjct: 2  MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANW 57

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 50.3 bits (119), Expect = 2e-08
 Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 4/163 (2%)

Query: 7   DVVIIGAGIAGLATALALKRLGVEPLVLEKSD----GLRGTGAAISFAPNAWLALDALGV 62
           + +IIGAG AGL  A  L +LG    V +        +  +G       N  +       
Sbjct: 6   ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLS 65

Query: 63  SHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTI 122
            +            +   +   A Q  +   K            + +    ++    G  
Sbjct: 66  QNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAK 125

Query: 123 HFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165
                  +   +  +     F+  V+ T  + K LI   G  S
Sbjct: 126 ILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS 168

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 49.6 bits (116), Expect = 4e-08
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEP-LVLEKSDGLRGT 43
           V+++GAG++G++ A  L   G+   L+LE +D + G 
Sbjct: 2  RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR 39

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 49.4 bits (116), Expect = 4e-08
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEP-LVLEKSDGLRGTGA 45
           +VIIGAGI G   A  L   G     VL++       G+
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGS 42

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 49.2 bits (116), Expect = 5e-08
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEP--LVLEKSDGLRG-TGAA 46
          M   + D+ I+GAG AGL  A+A  +        ++ K   +R  T AA
Sbjct: 1  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAA 49

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.3 bits (114), Expect = 9e-08
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 1   MAMVEKDVVIIGAGIAGLATALAL-KRLGVEPLVLEKSDGLRGTGAAISFAPNAWL---- 55
           +   E DVV++GAG AGL+ A  + K   V+  ++E+S    G         +A +    
Sbjct: 29  ITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKP 88

Query: 56  ---ALDALGVSHK 65
               LD +GV++ 
Sbjct: 89  AHLFLDEIGVAYD 101

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 45.6 bits (107), Expect = 6e-07
 Identities = 17/39 (43%), Positives = 21/39 (53%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43
          E DVVIIG G  G   A+   +LG +   +EK   L GT
Sbjct: 3  ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT 41

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 45.7 bits (107), Expect = 7e-07
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43
          DVV++G G  G + A A    G++  ++E+   L G 
Sbjct: 8  DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV 44

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 45.7 bits (107), Expect = 8e-07
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWL 55
          DV+IIG+G AGL+ AL L     + +VL K     G+         A  
Sbjct: 9  DVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAAVF 56

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 44.7 bits (104), Expect = 9e-07
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39
          DV+I+G+G AG A A+   R G+   ++ +  G
Sbjct: 3  DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG 35

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEK 36
          +      + I+G+G A    A+   R  ++PL+ E 
Sbjct: 1  LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEG 36

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKS 37
           V+I+GAG +G  TA  L + GV   +L +S
Sbjct: 4  QVLIVGAGFSGAETAFWLAQKGVRVGLLTQS 34

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43
          DVVIIG G AG   A+   +LG     +EK   L GT
Sbjct: 7  DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGT 43

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 4  VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          +E + +++GAG  G   A+   +LG +  ++EK +
Sbjct: 2  IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 7/44 (15%)

Query: 1  MAMVEKDVVIIGAGIAGLATALALKRL------GVEPLVLEKSD 38
           A  E DVVI+GAG AGL+ A  LK+L       +   ++EK+ 
Sbjct: 29 FAE-EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA 71

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 43.5 bits (101), Expect = 4e-06
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA 45
          DV++IGAG  G   A+   +LG++  ++EK  G  G  A
Sbjct: 5  DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA 43

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 8  VVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          VV+IGAG+ GL+TAL +       L      
Sbjct: 3  VVVIGAGVIGLSTALCIHERYHSVLQPLDVK 33

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 43.4 bits (101), Expect = 4e-06
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43
          E D + IG G AG   +  L+ +G   L++++   L G+
Sbjct: 42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS 80

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (101), Expect = 6e-06
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 5  EKDVVIIGAGIAGLATA--LALKRLGVEPLVLEKSDGLRGT 43
            DV+I+GAG +GL+ A  +A  R  ++  ++E S    G 
Sbjct: 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG 90

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.0 bits (97), Expect = 8e-06
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEP-LVLEKSD 38
            + ++GAG A ++ A  L RLG     + EK +
Sbjct: 5  AKIALLGAGPASISCASFLARLGYSDITIFEKQE 38

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 4  VEKDVVIIGAGIAGLATALALKRLGVEPLVLEK 36
          ++  ++IIG G  G   A+   +LG+  +++E 
Sbjct: 4  IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG 36

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEK 36
            ++I+G+G AG   A+   R  ++P+++  
Sbjct: 6  SKLLILGSGPAGYTAAVYAARANLQPVLITG 36

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 3  MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS 37
          +   D ++IG G  GLA+A     LG    V+E  
Sbjct: 1  VASYDYLVIGGGSGGLASARRAAELGARAAVVESH 35

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKS 37
          D+++IG G  G+A A    R   +  ++EKS
Sbjct: 3  DLIVIGGGSGGMAAARRAARHNAKVALVEKS 33

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (93), Expect = 4e-05
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          D++IIG G  GLA A    +   + +VL+   
Sbjct: 5  DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEK 36
          D + IG G  G+A+       G +  ++E 
Sbjct: 4  DYIAIGGGSGGIASINRAAMYGQKCALIEA 33

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 13/52 (25%), Positives = 18/52 (34%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALD 58
            V+IG G     +AL L   GV+ L+LE        G   +          
Sbjct: 4  PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDK 55

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 2  AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
          A+ +  VV++GAG+A ++    L++ G + L+    D
Sbjct: 1  AL-KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGD 36

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 6  KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38
           +VVI+G G+AG+  A  L+  G E  +    D
Sbjct: 4  DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALD 58
            ++IG+G  G   AL L + G+   ++E        G+             
Sbjct: 9  PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDK 60

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 37.5 bits (85), Expect = 3e-04
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 6  KDVVIIGAGIAGLATALALKRLG--VEPLVLEKSD 38
          + VV++G G  G   A  +K     +E  ++E + 
Sbjct: 3  RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 8  VVIIGAGIAGLATA--LALKRLGVEPLVLEKSDGLRG 42
          + ++G+G AG  TA  L          + EK     G
Sbjct: 4  ICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 40

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLAL 57
          DVVI+G+G  G   A  L   G +  + +   G   +G  I       +  
Sbjct: 6  DVVIVGSGPIGCTYARELVGAGYKVAMFDI--GEIDSGLKIGAHKKNTVEY 54

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 6e-04
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 5  EKDVVIIGAGIAGLATALALKRLGVE 30
              ++IG G A  A A +++     
Sbjct: 4  HVPFLLIGGGTAAFAAARSIRARDPG 29

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.6 bits (83), Expect = 7e-04
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 7/42 (16%)

Query: 8  VVIIGAGIAGLATALALKRLGVEPL-------VLEKSDGLRG 42
          + I+G+G +    A +L +             +LE      G
Sbjct: 5  IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG 46

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.4 bits (82), Expect = 8e-04
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 8  VVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLR 41
          V+++G+   G      L  L    E    EK D + 
Sbjct: 3  VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS 38

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 7  DVVIIGAGIAGLATALALKRLGVEPL---VLEKSDGLRGTGAAISFAPNAWL 55
           +VI+G G AG   AL       E     V++  DG+ G        P+   
Sbjct: 3  RIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVLDDCVPSKTF 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.91
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.9
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.87
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.87
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.87
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.84
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.82
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.82
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.78
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.73
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.73
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.72
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.71
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.68
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.68
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.66
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.62
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.62
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.6
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.58
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.58
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.58
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.55
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.54
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.53
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.47
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.46
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.46
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.46
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.43
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.43
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.42
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.41
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.41
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.39
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.39
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.38
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.38
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.37
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.35
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.34
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.34
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.33
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.32
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.31
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.29
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.29
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.27
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.24
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.23
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.23
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.22
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.21
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.19
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.18
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.15
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.15
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.14
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.14
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.12
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.12
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.11
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.1
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.06
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.03
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.02
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.0
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.96
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.96
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.95
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.94
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.91
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.88
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.88
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.86
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.83
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.82
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.82
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.82
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.82
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.82
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.8
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.77
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.76
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.68
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.68
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.67
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.65
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.52
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.51
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.08
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.07
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.07
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.96
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.94
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.91
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.89
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.79
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.76
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.74
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.69
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.6
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.58
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.57
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	97.56
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.56
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.41
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.37
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.27
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.26
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.24
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.23
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.14
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.09
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.08
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.03
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.98
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.95
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.92
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.92
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.86
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.84
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.82
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.8
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.77
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.77
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.72
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.72
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.69
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.67
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.66
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.66
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.65
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.64
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.63
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.61
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.6
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.6
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.59
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.57
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.5
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.48
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.47
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.45
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.39
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.35
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.3
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.28
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.2
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.2
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.05
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.04
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.92
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.9
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.86
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.8
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.78
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.76
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.72
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.68
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.64
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.63
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.6
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.56
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.47
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.33
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.31
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.29
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.24
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.22
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.18
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.94
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.81
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.78
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.72
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.6
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	94.41
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.4
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.25
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.95
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.92
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.92
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	93.9
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	93.88
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.71
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	93.7
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.62
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.57
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.52
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.43
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.31
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.23
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	93.17
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	93.08
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.04
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.9
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	92.9
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.88
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	92.88
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.87
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	92.87
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	92.84
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	92.76
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	92.56
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	92.53
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.3
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.29
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.25
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	92.12
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	92.02
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	92.01
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	91.98
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	91.97
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.78
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	91.77
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	91.67
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	91.65
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	91.61
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	91.6
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.6
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.52
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	91.45
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.43
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	91.43
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	91.36
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.28
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	91.18
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.16
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.05
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	91.01
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.0
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	90.9
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	90.89
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	90.78
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	90.77
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	90.74
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.66
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	90.61
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	90.58
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.56
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	90.53
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	90.31
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.26
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.2
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	90.17
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	90.17
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	90.17
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	90.16
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.05
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	89.91
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	89.74
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	89.72
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	89.56
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.5
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	89.31
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	89.08
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	88.94
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	88.91
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	88.85
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	88.79
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	88.78
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	88.73
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	88.38
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	88.37
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	88.36
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	88.32
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	88.24
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	88.2
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.19
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	88.03
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	88.03
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	87.86
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	87.65
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	87.39
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	87.29
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	87.17
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	87.01
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	86.91
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	86.69
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	86.3
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	86.28
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	85.98
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	85.97
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	85.74
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	85.73
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	85.3
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	85.3
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	85.07
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	85.02
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	84.91
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	84.63
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	84.61
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	84.57
d1gpua3	146	Transketolase (TK), C-domain {Baker's yeast (Sacch	84.31
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	83.98
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	83.97
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	83.97
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	83.66
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	83.46
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	83.34
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	83.26
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	83.2
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	82.76
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	82.73
d2r8oa3	136	Transketolase (TK), C-domain {Escherichia coli [Ta	82.34
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.98
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	81.93
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	81.92
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	81.89
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	81.77
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	81.57
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	81.06
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	80.96
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	80.93
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	80.76
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	80.68
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	80.51
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	80.48
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	80.47

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=3e-23  Score=145.75  Aligned_cols=165  Identities=29%  Similarity=0.416  Sum_probs=124.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      +||+||||||+||++|+.|++.|+ +|+|+||.+.+...+++..+.+.+.+.|+.+++++.+.............+....
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~   81 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA   81 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence            699999999999999999999997 8999999999988999999999999999999999999988777666666665444


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHH----HHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC----cEEEeeE
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQT----LADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG----TIVKTKF  156 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g----~~~~a~~  156 (184)
                      ............................    ..+...+..+.++++++.+...+   +. +.+.+.++    +++.+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-v~v~~~~g~~~~~~~~ad~  157 (288)
T d3c96a1          82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERD---GR-VLIGARDGHGKPQALGADV  157 (288)
T ss_dssp             EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEET---TE-EEEEEEETTSCEEEEEESE
T ss_pred             EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecC---Cc-EEEEEEcCCCCeEEEeece
Confidence            3333333322222223333444333333    22222378899999999988776   44 66776665    4799999


Q ss_pred             EEecCCcchHHHhhhCCC
Q 030042          157 LIGCDGIHSTVAWWLGLS  174 (184)
Q Consensus       157 vI~a~G~~s~~~~~~~~~  174 (184)
                      ||.|+|.+|.+++.....
T Consensus       158 vi~ADG~~S~vr~~~~~~  175 (288)
T d3c96a1         158 LVGADGIHSAVRAHLHPD  175 (288)
T ss_dssp             EEECCCTTCHHHHHHCTT
T ss_pred             eeccCCccceeeeeeccc
Confidence            999999999998877544

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=5.2e-24  Score=150.57  Aligned_cols=165  Identities=19%  Similarity=0.296  Sum_probs=119.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC--CccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR--GTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      ++||+||||||+||++|+.|+++|++|+|+||.+...  +.+++..+.+.+++.++.+|+++.+.....+...+.+++..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~   81 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG   81 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecc
Confidence            5799999999999999999999999999999987532  34567889999999999999999998888777777766533


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE-ecCc--EEEeeEE
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDGT--IVKTKFL  157 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g~--~~~a~~v  157 (184)
                      ..  ....+... ........+.+..+.+.|.+.+.  +..+.++.+.+.....+  .+. +.|.. .+|+  +++||+|
T Consensus        82 ~~--~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~g~~~~i~a~~v  155 (292)
T d1k0ia1          82 QR--RRIDLKRL-SGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQ--GER-PYVTFERDGERLRLDCDYI  155 (292)
T ss_dssp             EE--EEECHHHH-HTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTT--SSS-CEEEEEETTEEEEEECSEE
T ss_pred             cc--cccccccc-cccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeec--cCc-eEEEEecCCcEEEEEeCEE
Confidence            22  11111111 11224456777888888887764  45566666555554443  244 44544 4553  5789999


Q ss_pred             EecCCcchHHHhhhCCCC
Q 030042          158 IGCDGIHSTVAWWLGLSE  175 (184)
Q Consensus       158 I~a~G~~s~~~~~~~~~~  175 (184)
                      |+|||.+|.+|+.++...
T Consensus       156 VgADG~~S~vR~~i~~~~  173 (292)
T d1k0ia1         156 AGCDGFHGISRQSIPAER  173 (292)
T ss_dssp             EECCCTTCSTGGGSCGGG
T ss_pred             EECCCCCCcccceeeecc
Confidence            999999999999876543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.87  E-value=9.3e-21  Score=131.77  Aligned_cols=154  Identities=25%  Similarity=0.321  Sum_probs=116.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-CccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      ..+|+||||||+|+++|..|+++|++|+||||.+.+. ..+.+..+.+.+...++.+++..+.....  ...........
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~~   81 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVP--SSSMEYVDALT   81 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBC--CCEEEEEETTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccC--CCcceeEeccC
Confidence            4589999999999999999999999999999987653 45788889999999999999876654433  33334444333


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                      .........       .........+...+.+......++++++++++...+   +. +.+.++||++++++++|.|+|.
T Consensus        82 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-v~v~~~dG~~~~~d~~v~adG~  150 (265)
T d2voua1          82 GERVGSVPA-------DWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDS---ET-VQMRFSDGTKAEANWVIGADGG  150 (265)
T ss_dssp             CCEEEEEEC-------CCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECS---SC-EEEEETTSCEEEESEEEECCCT
T ss_pred             Cceeccccc-------ccccchhHHHHHHHHHhcccceeecCcEEEEEEeeC---Cc-eEEEECCCCEEEEEEEeccccc
Confidence            332111111       122344555555555555578899999999999875   55 8999999999999999999999


Q ss_pred             chHHHhhh
Q 030042          164 HSTVAWWL  171 (184)
Q Consensus       164 ~s~~~~~~  171 (184)
                      +|.+++.+
T Consensus       151 ~s~~r~~~  158 (265)
T d2voua1         151 ASVVRKRL  158 (265)
T ss_dssp             TCHHHHHH
T ss_pred             cccccccc
Confidence            99988765

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.87  E-value=1.2e-22  Score=142.39  Aligned_cols=72  Identities=14%  Similarity=0.171  Sum_probs=60.1

Q ss_pred             CeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhCCCCCc
Q 030042          101 PRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLGLSEPL  177 (184)
Q Consensus       101 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~~~~~~  177 (184)
                      ..++++..+.+.|.+.+.  |++++.+++|+++..++   +. +.|.+.+| ++.||.||+|+|++|. +.+.+|+..|.
T Consensus       145 ~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~---~~-~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~~~  219 (276)
T d1ryia1         145 DVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDG---EA-LFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNNAD  219 (276)
T ss_dssp             CCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSS---SS-EEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCCCS
T ss_pred             ceeeecccchhHHHHHHHHcCCEEecceEEEeEEeec---ce-EEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCccc
Confidence            346788888888887764  89999999999999765   55 88999887 6999999999999984 88889987654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.87  E-value=2.3e-22  Score=141.34  Aligned_cols=169  Identities=18%  Similarity=0.208  Sum_probs=104.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc---ee-e----ec--cc-HHHHHHHcCChHHHHhcC-CC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA---AI-S----FA--PN-AWLALDALGVSHKLASIY-PP   72 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~---~~-~----~~--~~-~~~~~~~~~~~~~~~~~~-~~   72 (184)
                      +|||+|||||++|+++|++|+++|.+|+|||+....+..+.   +. .    +.  +. ..-..+....|..+.... ..
T Consensus         3 ~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~e~~~~   82 (281)
T d2gf3a1           3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHHK   82 (281)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcccccCCCcceeecccCCcchhhhhcccccceeecchhhhhhc
Confidence            79999999999999999999999999999999765532221   11 1    11  11 111112222233222211 10


Q ss_pred             ----ccceEEEecCCCce---------------eee-------ecCCCC-------CCCCCCeeeeHHHHHHHHHhhCC-
Q 030042           73 ----VNRISVTNLGTGAT---------------QET-------SLTGKF-------GDGSGPRFIHRKKLLQTLADELP-  118 (184)
Q Consensus        73 ----~~~~~~~~~~~~~~---------------~~~-------~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~-  118 (184)
                          ...+......+...               ..+       .++...       ...+...++++..+...|.+.+. 
T Consensus        83 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~a~~  162 (281)
T d2gf3a1          83 IFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEA  162 (281)
T ss_dssp             CEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHHH
T ss_pred             cccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeeecccccccccccccccccccccc
Confidence                00111111111100               000       011110       01123457888899998888774 


Q ss_pred             -CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHhhhCCCCCcc
Q 030042          119 -NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLSEPLN  178 (184)
Q Consensus       119 -~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~~~~~  178 (184)
                       |++++++++|+++...+   +. +.|.|.+| +++|+.||+|+|+++ .+.+.+|+..|..
T Consensus       163 ~Gv~i~~~~~V~~i~~~~---~~-v~V~t~~g-~i~a~~VViAaG~~s~~l~~~lg~~~~~~  219 (281)
T d2gf3a1         163 RGAKVLTHTRVEDFDISP---DS-VKIETANG-SYTADKLIVSMGAWNSKLLSKLNLDIPDE  219 (281)
T ss_dssp             TTCEEECSCCEEEEEECS---SC-EEEEETTE-EEEEEEEEECCGGGHHHHGGGGTEECCTS
T ss_pred             ccccccCCcEEEEEEEEC---CE-EEEEECCc-EEEcCEEEECCCCcchhhHHhcCCccccc
Confidence             89999999999999876   45 88999888 699999999999998 4777788766543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.84  E-value=2.3e-21  Score=134.06  Aligned_cols=153  Identities=18%  Similarity=0.196  Sum_probs=86.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc------ceeeecccHHHHH-HHcCC----hHHHHhcCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG------AAISFAPNAWLAL-DALGV----SHKLASIYPPV   73 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~------~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~   73 (184)
                      +|||+|||||++|+++|+.|+++|++|+||||++.+++..      ............+ .....    ...........
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE   81 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhH
Confidence            6999999999999999999999999999999988765321      1111111111111 11100    00000000000


Q ss_pred             cceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcE
Q 030042           74 NRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI  151 (184)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~  151 (184)
                      ............ ........    ..........+.+.|.+.++  +++++++++|+++...+  +.. ..|.++++++
T Consensus        82 ~~~~~~~~~g~~-~~~~~~~~----~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~~v~~~~g~~  153 (251)
T d2i0za1          82 DIITFFENLGVK-LKEEDHGR----MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN--GQT-KAVILQTGEV  153 (251)
T ss_dssp             HHHHHHHHTTCC-EEECGGGE----EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEE-EEEEETTCCE
T ss_pred             HHHHHHHhcCCc-cccccccc----eecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEEC--CEE-EEEEeCCCCe
Confidence            000000000000 00000000    00011223456666666553  89999999999998876  233 5688899999


Q ss_pred             EEeeEEEecCCcch
Q 030042          152 VKTKFLIGCDGIHS  165 (184)
Q Consensus       152 ~~a~~vI~a~G~~s  165 (184)
                      ++||.||+|||+.|
T Consensus       154 i~a~~vI~AtGg~S  167 (251)
T d2i0za1         154 LETNHVVIAVGGKS  167 (251)
T ss_dssp             EECSCEEECCCCSS
T ss_pred             EecCeEEEccCCcc
Confidence            99999999999876

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.82  E-value=1.5e-20  Score=130.17  Aligned_cols=144  Identities=22%  Similarity=0.223  Sum_probs=85.9

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc------cce-ee-----------ecc-cHHHHHHHcC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT------GAA-IS-----------FAP-NAWLALDALG   61 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~------~~~-~~-----------~~~-~~~~~~~~~~   61 (184)
                      |+ +.+||+|||||++|+++|+.|+++|.+|+||||.+.++..      ++. ..           ..+ .....+....
T Consensus         1 M~-~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~   79 (253)
T d2gqfa1           1 MS-QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYT   79 (253)
T ss_dssp             CE-EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSC
T ss_pred             CC-CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhc
Confidence            66 5689999999999999999999999999999999877532      111 00           001 0112222221


Q ss_pred             ChH---HHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCC
Q 030042           62 VSH---KLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTH  136 (184)
Q Consensus        62 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~  136 (184)
                      ..+   .+.....     .+.....   ..+ |          .......+.+.|.+.+.  +++++++++|++++..++
T Consensus        80 ~~~~~~~~~~~g~-----~~~~~~~---~~~-~----------~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~  140 (253)
T d2gqfa1          80 NWDFISLVAEQGI-----TYHEKEL---GQL-F----------CDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQN  140 (253)
T ss_dssp             HHHHHHHHHHTTC-----CEEECST---TEE-E----------ETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCS
T ss_pred             ccchhhhhhhcCc-----ceeeecC---Ccc-c----------cccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecC
Confidence            111   1111111     0000000   000 0          01123556666666554  899999999999988763


Q ss_pred             CCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042          137 DGSSPVFIHLVDGTIVKTKFLIGCDGIHS  165 (184)
Q Consensus       137 ~~~~~~~v~~~~g~~~~a~~vI~a~G~~s  165 (184)
                      .... ..+...++.+++||.||+|||+.|
T Consensus       141 ~~~v-~~~~~~~~~~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         141 DEKV-RFVLQVNSTQWQCKNLIVATGGLS  168 (253)
T ss_dssp             CSSC-CEEEEETTEEEEESEEEECCCCSS
T ss_pred             Ccee-EEEEecCCEEEEeCEEEEcCCccc
Confidence            2222 233445667899999999999765

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.82  E-value=1e-20  Score=134.32  Aligned_cols=77  Identities=16%  Similarity=0.329  Sum_probs=63.4

Q ss_pred             CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhCCCCC
Q 030042          100 GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLGLSEP  176 (184)
Q Consensus       100 ~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~~~~~  176 (184)
                      ...++++..+...+.+.+.  |++++.+++|+++...+  +.. +.|.|.+| +++||.||+|+|+|+. +.+++|...|
T Consensus       141 ~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~--~~v-~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~lP  216 (305)
T d1pj5a2         141 SDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSG--GRV-TGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAVP  216 (305)
T ss_dssp             TCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEE-EEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCCC
T ss_pred             cccccchhhhhhhHHhhhhcccccccCCceEEEEEEeC--CEE-EEEeccce-eEECCEEEEecchhHHHHHHHcCCccc
Confidence            4457788889988888774  89999999999999987  233 66888877 7999999999999984 7888888877


Q ss_pred             cccc
Q 030042          177 LNVN  180 (184)
Q Consensus       177 ~~~~  180 (184)
                      .++.
T Consensus       217 ~~~~  220 (305)
T d1pj5a2         217 PDGG  220 (305)
T ss_dssp             TTSC
T ss_pred             cccc
Confidence            6654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.78  E-value=2.3e-19  Score=126.66  Aligned_cols=136  Identities=18%  Similarity=0.219  Sum_probs=86.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT   83 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
                      +++||+|||||++||++|+.|.+.|++|+|||+.+.+++..+-..++          |.    ... .+.....    ..
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~yp----------g~----~~d-~~~~~~~----~s   66 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYP----------GA----RCD-IESIEYC----YS   66 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCT----------TC----BCS-SCTTTSS----CC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCC----------Cc----eec-ccccccc----cc
Confidence            46899999999999999999999999999999999887652100000          00    000 0000000    00


Q ss_pred             CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CC--eeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042           84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NG--TIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG  159 (184)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~--~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~  159 (184)
                      ........     .........+.++.++|.+.++  ++  +|+++|+|+++..+++  ...|.|.+.++.++++|+||.
T Consensus        67 ~~~~~~~~-----~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~--~~~W~V~~~~~~~~~~~~~i~  139 (298)
T d1w4xa1          67 FSEEVLQE-----WNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEA--TNTWTVDTNHGDRIRARYLIM  139 (298)
T ss_dssp             SCHHHHHH-----CCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETT--TTEEEEEETTCCEEEEEEEEE
T ss_pred             ccccccCC-----CCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecC--CCceeeccccccccccceEEE
Confidence            00000000     0011123445666666666553  44  6999999999997763  334999999999999999999


Q ss_pred             cCCcch
Q 030042          160 CDGIHS  165 (184)
Q Consensus       160 a~G~~s  165 (184)
                      |+|..+
T Consensus       140 atG~ls  145 (298)
T d1w4xa1         140 ASGQLS  145 (298)
T ss_dssp             CCCSCC
T ss_pred             eecccc
Confidence            999755

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.73  E-value=2.6e-18  Score=123.39  Aligned_cols=155  Identities=15%  Similarity=0.095  Sum_probs=85.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCcccee-----eecccHHHHHHHcCChHHHHhcCCCccceEE
Q 030042            6 KDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTGAAI-----SFAPNAWLALDALGVSHKLASIYPPVNRISV   78 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (184)
                      .+|+|||||++||++|..|++.+  .+|+|+||++.+|+...-.     .............  .........+......
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~   82 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTT--EPIVGPAALPVYPSPL   82 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCC--CCBCCSSSCCBCCCCC
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccc--cccccccccccccccc
Confidence            48999999999999999998876  4899999999887543110     0000000000000  0000000000000000


Q ss_pred             EecC-CCce-eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCc----
Q 030042           79 TNLG-TGAT-QETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT----  150 (184)
Q Consensus        79 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~----  150 (184)
                      .... .... ....+............+.+.++.++|.+.++  +..|+++++|++++..+   +. |.|.+.+++    
T Consensus        83 y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~---~~-w~Vt~~~~~~~~~  158 (335)
T d2gv8a1          83 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD---GS-WVVTYKGTKAGSP  158 (335)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET---TE-EEEEEEESSTTCC
T ss_pred             chhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecC---CE-EEEEEEecCCCCe
Confidence            0000 0000 11111111111112335667888888877665  56799999999999876   44 777775431    


Q ss_pred             --EEEeeEEEecCCcchH
Q 030042          151 --IVKTKFLIGCDGIHST  166 (184)
Q Consensus       151 --~~~a~~vI~a~G~~s~  166 (184)
                        +..+|+||+|+|..|.
T Consensus       159 ~~~~~~d~VI~AtG~~s~  176 (335)
T d2gv8a1         159 ISKDIFDAVSICNGHYEV  176 (335)
T ss_dssp             EEEEEESEEEECCCSSSS
T ss_pred             EEEEEeeEEEEccccccc
Confidence              4569999999998873

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.73  E-value=3.2e-17  Score=116.21  Aligned_cols=40  Identities=30%  Similarity=0.532  Sum_probs=36.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++|||+|||||++|+++|+.|+++|.+|+||||.+..++.
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~   54 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN   54 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            4699999999999999999999999999999998876543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.72  E-value=2.4e-17  Score=118.85  Aligned_cols=146  Identities=18%  Similarity=0.175  Sum_probs=101.4

Q ss_pred             cccEEEECCCHHHHHHHHHHH-----hCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEE
Q 030042            5 EKDVVIIGAGIAGLATALALK-----RLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVT   79 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~-----~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (184)
                      .|||+||||||+|+++|..|+     +.|++|+||||.+.+...+++..+.+.+++.|+.+|+++++.....+.....+.
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~~~~~~~   86 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALY   86 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHcCChHHHHhhcCCcceeEEE
Confidence            599999999999999999996     579999999999999889999999999999999999999999988888887776


Q ss_pred             ecCCCce-e-eeecC--CCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEE
Q 030042           80 NLGTGAT-Q-ETSLT--GKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIV  152 (184)
Q Consensus        80 ~~~~~~~-~-~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~  152 (184)
                      ....... . .....  ...........+.+..+...+.+...   .......+.+                   .+..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~  147 (360)
T d1pn0a1          87 NPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPL-------------------IPEKM  147 (360)
T ss_dssp             EECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSE-------------------EEEEE
T ss_pred             ecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeeeEec-------------------ccceE
Confidence            6544332 1 11111  11112223445667777666665532   1111111111                   11246


Q ss_pred             EeeEEEecCCcchHHHh
Q 030042          153 KTKFLIGCDGIHSTVAW  169 (184)
Q Consensus       153 ~a~~vI~a~G~~s~~~~  169 (184)
                      .++.++.|+|.+|.++.
T Consensus       148 ~~d~~~~~dg~~s~v~~  164 (360)
T d1pn0a1         148 EIDSSKAEDPEAYPVTM  164 (360)
T ss_dssp             EECGGGTTCTTCCCEEE
T ss_pred             EeeEEEEeecCCcceEE
Confidence            67777888887776543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.71  E-value=8.8e-17  Score=114.69  Aligned_cols=40  Identities=43%  Similarity=0.576  Sum_probs=36.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      +++||+|||+|++|+++|+.|+++|.+|+|+||.+..++.
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~   61 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN   61 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTT
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            4689999999999999999999999999999998876543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.68  E-value=1.3e-16  Score=113.61  Aligned_cols=156  Identities=15%  Similarity=0.158  Sum_probs=86.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc----eeee-----------cccHHHHHH----Hc-C--
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA----AISF-----------APNAWLALD----AL-G--   61 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~----~~~~-----------~~~~~~~~~----~~-~--   61 (184)
                      +++||+|||+|++|+++|+.|+++|.+|+|+||.+..++.+.    ++..           .......++    .. +  
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~   97 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN   97 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhcccc
Confidence            578999999999999999999999999999999876654321    1110           001111111    10 0  


Q ss_pred             --------------ChHHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeC
Q 030042           62 --------------VSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFS  125 (184)
Q Consensus        62 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~  125 (184)
                                    ..+++.+...+++....  ...........       +.........+.+.|.+.+.  +++++++
T Consensus        98 d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~--~gg~~~~r~~~-------~~~g~~~g~~i~~~L~~~~~~~g~~i~~~  168 (317)
T d1qo8a2          98 DIKLVTILAEQSADGVQWLESLGANLDDLKR--SGGARVDRTHR-------PHGGKSSGPEIIDTLRKAAKEQGIDTRLN  168 (317)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEEC--CTTCSSCCEEE-------CSSSSCHHHHHHHHHHHHHHHTTCCEECS
T ss_pred             chhHHHHHHhhhhhhhhhHHHhhhccccccc--ccCcccccccc-------cccccccchhhhHHHHHHhhhccceeeec
Confidence                          01122222332221110  00000000000       00011123456666665553  8899999


Q ss_pred             ceEEEEeccCCCCCc-ceEEEEecCc--EEEeeEEEecCCcchHHHh
Q 030042          126 SKIAAIDSQTHDGSS-PVFIHLVDGT--IVKTKFLIGCDGIHSTVAW  169 (184)
Q Consensus       126 ~~v~~~~~~~~~~~~-~~~v~~~~g~--~~~a~~vI~a~G~~s~~~~  169 (184)
                      ++++++..+++ +.. .+.+...+++  .+.||.||+|||.++...+
T Consensus       169 ~~v~~l~~~~~-g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~  214 (317)
T d1qo8a2         169 SRVVKLVVNDD-HSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKE  214 (317)
T ss_dssp             EEEEEEEECTT-SBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHH
T ss_pred             cchhheeeccc-ccceeeEeecccceEEEEeccceEEeccccccCHH
Confidence            99999877652 232 1334444553  5889999999999875433

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.66  E-value=2e-16  Score=113.30  Aligned_cols=41  Identities=34%  Similarity=0.494  Sum_probs=37.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      |..+.|||+|||||++||++|+.|+++|.+|+||||.+..+
T Consensus         1 m~~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~   41 (336)
T d2bs2a2           1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKR   41 (336)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGG
T ss_pred             CCceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence            77778999999999999999999999999999999976543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=7.8e-16  Score=105.97  Aligned_cols=42  Identities=26%  Similarity=0.410  Sum_probs=38.2

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      |+ .+|||+|||||++|+++|+.|++.|.+|+|||+++.+|+.
T Consensus         2 m~-~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~   43 (297)
T d2bcgg1           2 ID-TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGE   43 (297)
T ss_dssp             CC-CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             CC-CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcc
Confidence            44 5899999999999999999999999999999999877654

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.62  E-value=5.9e-15  Score=107.24  Aligned_cols=158  Identities=22%  Similarity=0.222  Sum_probs=96.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHh------CCCCeEEEeccCCCCCccc-eeeecccHHHHHHHcCChHHHHhc-C--CCcc
Q 030042            5 EKDVVIIGAGIAGLATALALKR------LGVEPLVLEKSDGLRGTGA-AISFAPNAWLALDALGVSHKLASI-Y--PPVN   74 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~------~g~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~   74 (184)
                      +|||+||||||+|+++|+.|+|      .|++|+||||...++.... +-.+.+..++.+-.  .+...... .  ....
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p--~~~~~~~~~~~~~~~~  109 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFP--DWKEKGAPLNTPVTED  109 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCT--THHHHTCCCCEECCEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHcc--chhhhccccccceecc
Confidence            6999999999999999999998      7999999999988876543 34455544443311  11111011 1  1111


Q ss_pred             ceEEEecCCCceeeeec-CCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe----
Q 030042           75 RISVTNLGTGATQETSL-TGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV----  147 (184)
Q Consensus        75 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~----  147 (184)
                      ...+..  ........+ ..............+..+..++.+.+.  ++.+..+..+.++...++ +.. ..+.+.    
T Consensus       110 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~-g~~-~~~~~~~~~~  185 (380)
T d2gmha1         110 RFGILT--EKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHED-GSV-KGIATNDVGI  185 (380)
T ss_dssp             EEEEEC--SSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTT-SSE-EEEEECCEEE
T ss_pred             eEEEee--ccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccC-Cce-eecccccccc
Confidence            222222  221122211 111122235667888999999998885  788888999988877652 111 222211    


Q ss_pred             -----------cCcEEEeeEEEecCCcchHHH
Q 030042          148 -----------DGTIVKTKFLIGCDGIHSTVA  168 (184)
Q Consensus       148 -----------~g~~~~a~~vI~a~G~~s~~~  168 (184)
                                 .+....++..+++.|....+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~  217 (380)
T d2gmha1         186 QKDGAPKTTFERGLELHAKVTIFAEGCHGHLA  217 (380)
T ss_dssp             CTTSCEEEEEECCCEEECSEEEECCCTTCHHH
T ss_pred             cccccccccccccccccccEEEEeeeCCCcch
Confidence                       123567899999999866543

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.6e-15  Score=106.46  Aligned_cols=41  Identities=32%  Similarity=0.464  Sum_probs=35.7

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLR   41 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~   41 (184)
                      |...++||+|||+|++||++|+.+++.  |.+|+|+||....+
T Consensus         1 m~~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~   43 (311)
T d1kf6a2           1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR   43 (311)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGG
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence            666789999999999999999999986  67899999976543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-14  Score=104.68  Aligned_cols=37  Identities=43%  Similarity=0.728  Sum_probs=34.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ||+|||||++||++|+.|+++|++|+|+|+.+.+++.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr   37 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR   37 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTT
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcce
Confidence            8999999999999999999999999999999888753

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.58  E-value=4.6e-15  Score=104.56  Aligned_cols=38  Identities=39%  Similarity=0.670  Sum_probs=35.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      ||+|||||++||++|+.|+++|++|+|+|+.+.+++..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~   39 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV   39 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceE
Confidence            89999999999999999999999999999999887643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=3.7e-14  Score=86.00  Aligned_cols=95  Identities=23%  Similarity=0.334  Sum_probs=74.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+|+|+.+...+.                                          
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~------------------------------------------   59 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS------------------------------------------   59 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh------------------------------------------
Confidence            47999999999999999999999999999997653111                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                                   .+.  --.+.+.+.+.++  |++++++++|+.+..+++  .. +.+.+++|+++.+|.||.|+|
T Consensus        60 -------------~d~--~~~~~~~~~l~~~--GV~~~~~~~v~~i~~~~~--~~-~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          60 -------------FDP--MISETLVEVMNAE--GPQLHTNAIPKAVVKNTD--GS-LTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             -------------SCH--HHHHHHHHHHHHH--SCEEECSCCEEEEEECTT--SC-EEEEETTSCEEEESEEEECSC
T ss_pred             -------------cch--hhHHHHHHHHHHC--CCEEEeCCEEEEEEEcCC--cE-EEEEECCCCEEEcCEEEEecC
Confidence                         000  0013444555554  899999999999988752  23 789999999999999999998

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.55  E-value=7.2e-14  Score=86.72  Aligned_cols=98  Identities=15%  Similarity=0.203  Sum_probs=73.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+.+....                                         
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~-----------------------------------------   74 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV-----------------------------------------   74 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-----------------------------------------
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc-----------------------------------------
Confidence            579999999999999999999999999999976531110                                         


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                                 ....    -...+.+.+.++  |++++++++|+.++...++... ..+.+++|+++.+|+||.|+|
T Consensus        75 -----------~~~~----~~~~~~~~~~~~--GV~i~~~~~v~~i~~~~~~~~v-~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          75 -----------TAPP----VSAFYEHLHREA--GVDIRTGTQVCGFEMSTDQQKV-TAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             -----------SCHH----HHHHHHHHHHHH--TCEEECSCCEEEEEECTTTCCE-EEEEETTSCEEECSEEEECCC
T ss_pred             -----------cchh----hhhhhhhccccc--ccEEEeCCeEEEEEEeCCCceE-EEEECCCCCEEECCEEEEeeC
Confidence                       0000    012333444444  8999999999999886532333 568899999999999999998

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=3.4e-14  Score=95.23  Aligned_cols=120  Identities=17%  Similarity=0.092  Sum_probs=73.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC-CCCccceeeecc-cHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG-LRGTGAAISFAP-NAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      .|||+|||||++|+.+|+.++|.|.++++|+++.. .+..++...... ..-...++                       
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~re-----------------------   58 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERA-----------------------   58 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHH-----------------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeee-----------------------
Confidence            59999999999999999999999999999998632 111111000000 00000000                       


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                            ..     ..++.. +-.+..+.+.+ +..++..++. .+|+++...+  +.. ..|.+.+|..++|+.||+|||
T Consensus        59 ------id-----~kG~av-~a~raQ~k~~l-~~~~nL~i~q-~~V~dli~e~--~~v-~gV~t~~G~~~~AkaVILtTG  121 (230)
T d2cula1          59 ------YD-----PKDERV-WAFHARAKYLL-EGLRPLHLFQ-ATATGLLLEG--NRV-VGVRTWEGPPARGEKVVLAVG  121 (230)
T ss_dssp             ------CC-----TTCCCH-HHHHHHHHHHH-HTCTTEEEEE-CCEEEEEEET--TEE-EEEEETTSCCEECSEEEECCT
T ss_pred             ------ee-----ccchhh-hhHHHHHHHHH-hhhcCHHHHh-ccceeeEecc--cce-eeEEeccccEEEEeEEEEccC
Confidence                  00     112211 11233343333 3334777765 4788887765  233 679999999999999999999


Q ss_pred             cc
Q 030042          163 IH  164 (184)
Q Consensus       163 ~~  164 (184)
                      .+
T Consensus       122 TF  123 (230)
T d2cula1         122 SF  123 (230)
T ss_dssp             TC
T ss_pred             cc
Confidence            65

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.5e-14  Score=103.39  Aligned_cols=40  Identities=38%  Similarity=0.444  Sum_probs=36.0

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .++|||+|||+|++||++|+.++++|.+|+|+||.+..++
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg   44 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS   44 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGS
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            3589999999999999999999999999999999875543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.47  E-value=4.2e-13  Score=81.74  Aligned_cols=92  Identities=18%  Similarity=0.273  Sum_probs=68.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ..+++|||||+.|+-+|..|++.|.+|+++|+.+.+....                                        
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~----------------------------------------   69 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA----------------------------------------   69 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc----------------------------------------
Confidence            3589999999999999999999999999999976531100                                        


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                                  .  +  .--...+.+.+.++  |++++++++|+++...        .+.+.||+++.||.||.|+|
T Consensus        70 ------------~--~--~~~~~~~~~~l~~~--GV~i~~~~~v~~~~~~--------~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          70 ------------A--P--ATLADFVARYHAAQ--GVDLRFERSVTGSVDG--------VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             ------------S--C--HHHHHHHHHHHHTT--TCEEEESCCEEEEETT--------EEEETTSCEEECSEEEECSC
T ss_pred             ------------C--C--HHHHHHHHHHHHHC--CcEEEeCCEEEEEeCC--------EEEECCCCEEECCEEEEeeC
Confidence                        0  0  00012333444444  8999999999887642        25678999999999999998

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.46  E-value=1.3e-12  Score=79.38  Aligned_cols=94  Identities=24%  Similarity=0.315  Sum_probs=70.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      -+++|||||+.|+-+|..|++.|.+|+++|+.+...+.                                          
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~------------------------------------------   60 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA------------------------------------------   60 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------------------------------
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc------------------------------------------
Confidence            57999999999999999999999999999987653111                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC---cEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG---TIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g---~~~~a~~vI~a~G  162 (184)
                                   .+.  --...+.+.|.+.  |++++.++++++++..+   +. +.+.+.++   +++.+|.|+.|+|
T Consensus        61 -------------~d~--ei~~~l~~~l~~~--Gv~i~~~~~v~~i~~~~---~~-v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          61 -------------VDE--QVAKEAQKILTKQ--GLKILLGARVTGTEVKN---KQ-VTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             -------------SCH--HHHHHHHHHHHHT--TEEEEETCEEEEEEECS---SC-EEEEEESSSEEEEEEESEEEECSC
T ss_pred             -------------ccc--hhHHHHHHHHHhc--CceeecCcEEEEEEEeC---CE-EEEEEEECCCCEEEECCEEEEeeC
Confidence                         000  0023344444444  89999999999999876   44 66666544   5799999999998

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.46  E-value=2.9e-13  Score=89.29  Aligned_cols=118  Identities=15%  Similarity=0.162  Sum_probs=76.5

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN   80 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
                      |...++||+||||||+|+.+|..|+|.|.+++|+|+.........+.                         .....   
T Consensus         1 m~~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~-------------------------~~~~~---   52 (192)
T d1vdca1           1 LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ-------------------------LTTTT---   52 (192)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG-------------------------GGGCS---
T ss_pred             CCcccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccc-------------------------cccch---
Confidence            66678999999999999999999999999999999865432110000                         00000   


Q ss_pred             cCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042           81 LGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI  158 (184)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI  158 (184)
                            ....+     .+ ........++...+.+++.  ++++..+ +|.++...+   +. +.+.+..+ .+.++.++
T Consensus        53 ------~~~~~-----~~-~~~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~---~~-~~v~~~~~-~~~~~~~~  114 (192)
T d1vdca1          53 ------DVENF-----PG-FPEGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSS---KP-FKLFTDSK-AILADAVI  114 (192)
T ss_dssp             ------EECCS-----TT-CTTCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSS---SS-EEEECSSE-EEEEEEEE
T ss_pred             ------hhhcc-----cc-ccccccchHHHHHHHHHHHhhcceeeee-eEEeccccc---Cc-EEecccce-eeeeeeEE
Confidence                  00000     11 1123456677777766553  6777655 677877665   43 66665554 68899999


Q ss_pred             ecCCcc
Q 030042          159 GCDGIH  164 (184)
Q Consensus       159 ~a~G~~  164 (184)
                      .++|..
T Consensus       115 ~a~g~~  120 (192)
T d1vdca1         115 LAIGAV  120 (192)
T ss_dssp             ECCCEE
T ss_pred             EEeeee
Confidence            999963

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.46  E-value=2.1e-13  Score=97.16  Aligned_cols=38  Identities=47%  Similarity=0.656  Sum_probs=35.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..+|+|||||++||++|+.|+++|++|+|||+.+.+++
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG   67 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   67 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            35899999999999999999999999999999887765

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.43  E-value=2.2e-12  Score=78.20  Aligned_cols=96  Identities=14%  Similarity=0.115  Sum_probs=71.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHh---CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            6 KDVVIIGAGIAGLATALALKR---LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      .+++|||||++|+-+|..|++   .|.+|+++|+.+...+.                                       
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~---------------------------------------   59 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG---------------------------------------   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT---------------------------------------
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc---------------------------------------
Confidence            589999999999999987654   48899999987653110                                       


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                                      .+  .--...+.+.+.++  |+++++++++++++.++   ++...+.+++|+++.||.||.|+|
T Consensus        60 ----------------~d--~~~~~~~~~~l~~~--GI~v~~~~~v~~i~~~~---~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          60 ----------------FD--SELRKQLTEQLRAN--GINVRTHENPAKVTKNA---DGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             ----------------SC--HHHHHHHHHHHHHT--TEEEEETCCEEEEEECT---TSCEEEEETTSCEEEESEEEECSC
T ss_pred             ----------------cc--chhhHHHHHHHhhC--cEEEEcCCEEEEEEECC---CCEEEEEECCCCEEEcCEEEEecC
Confidence                            00  00023344444444  89999999999998765   222778999999999999999999


Q ss_pred             c
Q 030042          163 I  163 (184)
Q Consensus       163 ~  163 (184)
                      .
T Consensus       117 R  117 (117)
T d1feca2         117 R  117 (117)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.1e-13  Score=82.62  Aligned_cols=95  Identities=25%  Similarity=0.352  Sum_probs=70.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHh----CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            6 KDVVIIGAGIAGLATALALKR----LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      .+++|||||++|+-+|..|++    .|.+|+++|+.+.+....                                     
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~-------------------------------------   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI-------------------------------------   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT-------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc-------------------------------------
Confidence            479999999999999998864    588999999876531100                                     


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD  161 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~  161 (184)
                                       .+.  --...+.+.+.+.  |++++++++|.+++.++   .. +.+.+++|+++.||.||.|+
T Consensus        81 -----------------~~~--~~~~~~~~~l~~~--GV~~~~~~~V~~i~~~~---~~-~~v~l~~G~~i~aD~Vi~A~  135 (137)
T d1m6ia2          81 -----------------LPE--YLSNWTMEKVRRE--GVKVMPNAIVQSVGVSS---GK-LLIKLKDGRKVETDHIVAAV  135 (137)
T ss_dssp             -----------------SCH--HHHHHHHHHHHTT--TCEEECSCCEEEEEEET---TE-EEEEETTSCEEEESEEEECC
T ss_pred             -----------------CCH--HHHHHHHHHHHhC--CcEEEeCCEEEEEEecC---CE-EEEEECCCCEEECCEEEEee
Confidence                             000  0012233334333  89999999999998875   44 78999999999999999999


Q ss_pred             C
Q 030042          162 G  162 (184)
Q Consensus       162 G  162 (184)
                      |
T Consensus       136 G  136 (137)
T d1m6ia2         136 G  136 (137)
T ss_dssp             C
T ss_pred             c
Confidence            8

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=3.9e-13  Score=94.83  Aligned_cols=40  Identities=40%  Similarity=0.498  Sum_probs=34.8

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            2 AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         2 ~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ..++|||+|||+|++|+++|+.+++.| +|+|+||.+..++
T Consensus         4 p~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG   43 (305)
T d1chua2           4 PEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEG   43 (305)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC-
T ss_pred             CcccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCC
Confidence            345799999999999999999999888 9999999876654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2.7e-13  Score=87.89  Aligned_cols=39  Identities=28%  Similarity=0.502  Sum_probs=36.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ..+|+||||||+||++|+.|+++|++|+|||+.+.+++.
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~   81 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ   81 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTT
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCce
Confidence            468999999999999999999999999999999888764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.41  E-value=3.4e-13  Score=93.97  Aligned_cols=41  Identities=37%  Similarity=0.583  Sum_probs=36.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCCeEEEeccCCCCCcc
Q 030042            4 VEKDVVIIGAGIAGLATALALKR-LGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~-~g~~v~vie~~~~~~~~~   44 (184)
                      .++||+||||||+||++|+.|++ .|++|+|+|+.+.+++..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~   73 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   73 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCce
Confidence            46899999999999999999987 499999999998877554

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=3e-12  Score=84.18  Aligned_cols=112  Identities=18%  Similarity=0.271  Sum_probs=72.2

Q ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042            2 AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL   81 (184)
Q Consensus         2 ~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
                      +.+..||+||||||+|+.+|..|+|.|.+|+|||+....+...                        ...          
T Consensus         2 ~~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~------------------------~~~----------   47 (190)
T d1trba1           2 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLT------------------------TTT----------   47 (190)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGG------------------------GCS----------
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccccccc------------------------ccc----------
Confidence            3467899999999999999999999999999999865422110                        000          


Q ss_pred             CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042           82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG  159 (184)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~  159 (184)
                           ....+.     + ........++.+.+.+...  ++.+.++ +|+.+...+   .. +.+.+.++ .+.++.+++
T Consensus        48 -----~i~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~---~~-~~v~~~~~-~~~~~~viv  110 (190)
T d1trba1          48 -----EVENWP-----G-DPNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQN---RP-FRLNGDNG-EYTCDALII  110 (190)
T ss_dssp             -----BCCCST-----T-CCSSCBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSS---SS-EEEEESSC-EEEEEEEEE
T ss_pred             -----hhhhhh-----c-cccccchHHHHHHHHHHHHhcCcEEecc-eeEEEecCC---Cc-EEEEEeee-eEeeeeeee
Confidence                 000000     0 0112334556655555443  5666554 688887765   33 66666554 789999999


Q ss_pred             cCCcc
Q 030042          160 CDGIH  164 (184)
Q Consensus       160 a~G~~  164 (184)
                      ++|..
T Consensus       111 a~G~~  115 (190)
T d1trba1         111 ATGAS  115 (190)
T ss_dssp             CCCEE
T ss_pred             eccee
Confidence            99964

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.39  E-value=4.7e-13  Score=92.04  Aligned_cols=37  Identities=35%  Similarity=0.557  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      .+.+|+|||||++|+++|+.|+++|.+|+|+||....
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~   41 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3579999999999999999999999999999997543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.38  E-value=5e-12  Score=76.43  Aligned_cols=93  Identities=22%  Similarity=0.344  Sum_probs=70.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+|+|+.+.+.+.                                          
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~------------------------------------------   60 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK------------------------------------------   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT------------------------------------------
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcccccc------------------------------------------
Confidence            47999999999999999999999999999997653100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEE-eeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVK-TKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~-a~~vI~a  160 (184)
                                   .+  .--...+.+.+.++  |+++++++++++++..++  .. +.+.+.+|++++ +|.||.|
T Consensus        61 -------------~d--~~~~~~~~~~l~~~--gV~i~~~~~v~~i~~~~~--~~-~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          61 -------------FD--ESVINVLENDMKKN--NINIVTFADVVEIKKVSD--KN-LSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             -------------SC--HHHHHHHHHHHHHT--TCEEECSCCEEEEEESST--TC-EEEEETTSCEEEEESEEEEC
T ss_pred             -------------cc--HHHHHHHHHHHHhC--CCEEEECCEEEEEEEcCC--Ce-EEEEECCCCEEEeCCEEEEe
Confidence                         00  00013344444444  899999999999987762  33 889999998775 6999987

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.38  E-value=1.7e-12  Score=78.41  Aligned_cols=92  Identities=16%  Similarity=0.302  Sum_probs=67.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++|+.+...+.                                          
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~------------------------------------------   59 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT------------------------------------------   59 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc------------------------------------------
Confidence            48999999999999999999999999999997653110                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G  162 (184)
                                   .+.  --...+.+.|.++  |++++++++|+++....      ..+...++  +++.||.||.|+|
T Consensus        60 -------------~d~--~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~------~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          60 -------------YDS--ELTAPVAESLKKL--GIALHLGHSVEGYENGC------LLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             -------------SCH--HHHHHHHHHHHHH--TCEEETTCEEEEEETTE------EEEECSSSCCCEECCSCEEECCC
T ss_pred             -------------ccc--hhHHHHHHHHHhh--cceEEcCcEEEEEcCCe------EEEEEcCCCeEEEEcCEEEEecC
Confidence                         000  0023455555555  89999999999986432      33333333  5899999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=2.2e-11  Score=74.16  Aligned_cols=94  Identities=22%  Similarity=0.251  Sum_probs=68.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+|+|+.+.+-+.                                          
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~------------------------------------------   61 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS------------------------------------------   61 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS------------------------------------------
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh------------------------------------------
Confidence            58999999999999999999999999999997653111                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC-----cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-----TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-----~~~~a~~vI~a  160 (184)
                                 .  +  .--...+.+.|.+.  |++++++++|++++..++ +.. +.+...++     +++++|.|++|
T Consensus        62 -----------~--d--~ei~~~l~~~l~~~--GV~i~~~~~v~~v~~~~~-~~~-v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          62 -----------M--D--GEVAKATQKFLKKQ--GLDFKLSTKVISAKRNDD-KNV-VEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             -----------S--C--HHHHHHHHHHHHHT--TCEEECSEEEEEEEEETT-TTE-EEEEEEETTTTEEEEEEESEEEEC
T ss_pred             -----------h--h--hhhHHHHHHHHHhc--cceEEeCCEEEEEEEeCC-CcE-EEEEEEeCCCCCeEEEEeCEEEEC
Confidence                       0  0  00013344445444  899999999999998763 222 55555443     47999999986

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.35  E-value=2.6e-12  Score=92.29  Aligned_cols=38  Identities=34%  Similarity=0.506  Sum_probs=33.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh----CCCCeEEEeccCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKR----LGVEPLVLEKSDGLR   41 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~----~g~~v~vie~~~~~~   41 (184)
                      .++||+|||+|++|+++|+.|++    +|.+|+|+||.+..+
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g   61 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER   61 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence            46899999999999999999975    699999999977654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.34  E-value=5e-12  Score=77.20  Aligned_cols=92  Identities=20%  Similarity=0.256  Sum_probs=66.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++|+.+.+-...                                         
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~-----------------------------------------   69 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY-----------------------------------------   69 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------------------------------
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc-----------------------------------------
Confidence            489999999999999999999999999999976431100                                         


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a  160 (184)
                                 .++.    -...+.+.+.++  |+++++++++++++.++   .  +.....+|+++.||.||.|
T Consensus        70 -----------~d~~----~~~~~~~~l~~~--gv~~~~~~~v~~i~~~~---~--~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          70 -----------LDKE----FTDVLTEEMEAN--NITIATGETVERYEGDG---R--VQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             -----------CCHH----HHHHHHHHHHTT--TEEEEESCCEEEEECSS---B--CCEEEESSCEEECSEEEEC
T ss_pred             -----------cchh----hHHHHHHHhhcC--CeEEEeCceEEEEEcCC---C--EEEEEeCCCEEECCEEEEE
Confidence                       0000    012333444443  89999999999998653   3  3333567889999999987

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.34  E-value=4.1e-11  Score=72.45  Aligned_cols=92  Identities=14%  Similarity=0.269  Sum_probs=67.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++|+.+...+.                                          
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~------------------------------------------   60 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG------------------------------------------   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------------------------------
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceeccc------------------------------------------
Confidence            58999999999999999999999999999997653110                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE-ecC--cEEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDG--TIVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g--~~~~a~~vI~a  160 (184)
                                   .+.  --...+.+.+.++  |++++++++|++++..+   ++ +.+.+ .+|  +++.+|.||+.
T Consensus        61 -------------~d~--~~~~~l~~~l~~~--GI~i~~~~~v~~i~~~~---~~-~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          61 -------------FEK--QMAAIIKKRLKKK--GVEVVTNALAKGAEERE---DG-VTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             -------------SCH--HHHHHHHHHHHHT--TCEEEESEEEEEEEEET---TE-EEEEEEETTEEEEEEESEEEEC
T ss_pred             -------------ccc--hhHHHHHHHHHhc--CCEEEcCCEEEEEEEcC---CE-EEEEEEeCCCEEEEEeEEEEEC
Confidence                         000  0013344455544  89999999999999876   44 44544 444  57999999874

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.33  E-value=1.1e-11  Score=75.77  Aligned_cols=95  Identities=21%  Similarity=0.266  Sum_probs=69.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      -+++|||||+.|+-+|..+++.|.+|+++|+.+..-+.                                          
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~------------------------------------------   64 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG------------------------------------------   64 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc------------------------------------------
Confidence            47999999999999999999999999999997653111                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE--ecC--cEEEeeEEEecC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL--VDG--TIVKTKFLIGCD  161 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~~g--~~~~a~~vI~a~  161 (184)
                                 .  +  .--...+.+.+.++  +++++.++++++++..+   ++ +.+.+  .+|  +++++|.|+.|+
T Consensus        65 -----------~--d--~~~~~~l~~~l~~~--gv~~~~~~~v~~v~~~~---~g-~~v~~~~~~g~~~~i~~D~vl~A~  123 (125)
T d1ojta2          65 -----------A--D--RDLVKVWQKQNEYR--FDNIMVNTKTVAVEPKE---DG-VYVTFEGANAPKEPQRYDAVLVAA  123 (125)
T ss_dssp             -----------S--C--HHHHHHHHHHHGGG--EEEEECSCEEEEEEEET---TE-EEEEEESSSCCSSCEEESCEEECC
T ss_pred             -----------c--h--hhHHHHHHHHHHHc--CcccccCcEEEEEEEcC---Cc-EEEEEEeCCCCeEEEEcCEEEEec
Confidence                       0  0  00013344444443  89999999999999876   34 44444  333  479999999999


Q ss_pred             Cc
Q 030042          162 GI  163 (184)
Q Consensus       162 G~  163 (184)
                      |.
T Consensus       124 GR  125 (125)
T d1ojta2         124 GR  125 (125)
T ss_dssp             CE
T ss_pred             CC
Confidence            94

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.32  E-value=3.3e-11  Score=72.85  Aligned_cols=93  Identities=12%  Similarity=0.145  Sum_probs=68.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC---CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042            6 KDVVIIGAGIAGLATALALKRL---GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG   82 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
                      .+++|||||+.|+-+|..|++.   +.+|+++|+.+..-+.                                       
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~---------------------------------------   61 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG---------------------------------------   61 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT---------------------------------------
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc---------------------------------------
Confidence            4899999999999999877654   4579999987643110                                       


Q ss_pred             CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEec
Q 030042           83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGC  160 (184)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a  160 (184)
                                      .+  .--...+.+.|.++  |+++++++++++++..++  .. ..+.+++|+++.||.||.|
T Consensus        62 ----------------~d--~~~~~~l~~~l~~~--GV~v~~~~~v~~ie~~~~--~~-~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          62 ----------------FD--HTLREELTKQLTAN--GIQILTKENPAKVELNAD--GS-KSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             ----------------SC--HHHHHHHHHHHHHT--TCEEEESCCEEEEEECTT--SC-EEEEETTSCEEEESEEEEC
T ss_pred             ----------------cc--hHHHHHHHHHHHhc--CcEEEcCCEEEEEEEcCC--Ce-EEEEECCCcEEEeCEEEEe
Confidence                            00  00023455555554  899999999999987652  33 7899999999999999987

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.31  E-value=4.9e-12  Score=77.16  Aligned_cols=89  Identities=20%  Similarity=0.330  Sum_probs=66.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||++|+-+|..|++.|.+|+++|+.+...+      +++                                  
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~------~d~----------------------------------   72 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG------LDE----------------------------------   72 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT------CCH----------------------------------
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC------CCH----------------------------------
Confidence            4799999999999999999999999999998754210      000                                  


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                                    .    -...+.+.|.+.  |++++.+++++++..+     + +   ..+++.+.+|.||.|+|.
T Consensus        73 --------------~----~~~~~~~~l~~~--GV~~~~~~~v~~~~~~-----~-v---~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          73 --------------E----LSNMIKDMLEET--GVKFFLNSELLEANEE-----G-V---LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             --------------H----HHHHHHHHHHHT--TEEEECSCCEEEECSS-----E-E---EETTEEEECSCEEEECCE
T ss_pred             --------------H----HHHHHHHHHHHC--CcEEEeCCEEEEEeCC-----E-E---EeCCCEEECCEEEEEEEe
Confidence                          0    023344555554  8999999999887543     1 2   346678999999999994

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2.8e-11  Score=78.91  Aligned_cols=113  Identities=19%  Similarity=0.212  Sum_probs=69.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      .|||+||||||+|+.+|..+++.|.+|+|||++.  ++...                       ..     .        
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~~--gg~~~-----------------------~~-----~--------   42 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF--GGQIL-----------------------DT-----V--------   42 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSST--TGGGG-----------------------GC-----C--------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEec--CCccc-----------------------cc-----c--------
Confidence            3899999999999999999999999999999752  11100                       00     0        


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                        ....+.       .........+.+.+.....  +.+......+..+......... ......+..++.++.++.++|
T Consensus        43 --~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g  112 (184)
T d1fl2a1          43 --DIENYI-------SVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGL-HQIETASGAVLKARSIIVATG  112 (184)
T ss_dssp             --EECCBT-------TBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCC-EEEEETTSCEEEEEEEEECCC
T ss_pred             --cceecc-------ccchhhhHHHHHHHHHHhhheeceeeccceeeeecccccccce-eeeeeecceeeeccccccccc
Confidence              000011       0111223444444443332  4556666666666654421122 555566667899999999999


Q ss_pred             cch
Q 030042          163 IHS  165 (184)
Q Consensus       163 ~~s  165 (184)
                      ...
T Consensus       113 ~~~  115 (184)
T d1fl2a1         113 AKL  115 (184)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.29  E-value=1.5e-11  Score=74.88  Aligned_cols=96  Identities=16%  Similarity=0.232  Sum_probs=68.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      ..++|||||+.|+-+|..|++.|.+|+++++.+...+.                                          
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~------------------------------------------   60 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI------------------------------------------   60 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC------------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc------------------------------------------
Confidence            57999999999999999999999999999997653211                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEE---EecCcEEEeeEEEecCC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIH---LVDGTIVKTKFLIGCDG  162 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~---~~~g~~~~a~~vI~a~G  162 (184)
                                   .+.  --...+.+.+.+.  +++++.+++++.++..++ +.. ..+.   ..+++++.||.||.|+|
T Consensus        61 -------------~d~--~~~~~~~~~l~~~--gI~v~~~~~v~~i~~~~~-~~~-~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          61 -------------KDN--ETRAYVLDRMKEQ--GMEIISGSNVTRIEEDAN-GRV-QAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             -------------CSH--HHHHHHHHHHHHT--TCEEESSCEEEEEEECTT-SBE-EEEEEEETTEEEEEECSCEEECCC
T ss_pred             -------------ccc--chhhhhhhhhhcc--ccEEEcCCEEEEEEecCC-ceE-EEEEEEeCCCCEEEEcCEEEEEEC
Confidence                         000  0023444445444  899999999999998762 121 2222   23446899999999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=7.4e-11  Score=71.74  Aligned_cols=97  Identities=13%  Similarity=0.066  Sum_probs=66.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+|++++.... .                                          
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~-~------------------------------------------   57 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-G------------------------------------------   57 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST-T------------------------------------------
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc-c------------------------------------------
Confidence            479999999999999999999999999999742110 0                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC---c--EEEeeEEEec
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG---T--IVKTKFLIGC  160 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g---~--~~~a~~vI~a  160 (184)
                                   .+  .--...+.+.+.+.  |++++++++|+.++..++.......+...++   +  ...+|.|+.|
T Consensus        58 -------------~D--~~~~~~l~~~l~~~--Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~A  120 (122)
T d1h6va2          58 -------------FD--QDMANKIGEHMEEH--GIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLA  120 (122)
T ss_dssp             -------------SC--HHHHHHHHHHHHHT--TEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECC
T ss_pred             -------------CC--HHHHHHHHHHHHHC--CCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEE
Confidence                         00  00013344445444  8999999999999875432222255544432   2  4568999999


Q ss_pred             CC
Q 030042          161 DG  162 (184)
Q Consensus       161 ~G  162 (184)
                      +|
T Consensus       121 iG  122 (122)
T d1h6va2         121 VG  122 (122)
T ss_dssp             CC
T ss_pred             eC
Confidence            98

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.24  E-value=4.3e-11  Score=72.96  Aligned_cols=94  Identities=23%  Similarity=0.377  Sum_probs=68.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||..|+-+|..+++.|.+|+|+|+.+.+.+.                                          
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~------------------------------------------   63 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT------------------------------------------   63 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------------------------------------------
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch------------------------------------------
Confidence            47999999999999999999999999999997654111                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCc-ceEEEEec-C--cEEEeeEEEecC
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSS-PVFIHLVD-G--TIVKTKFLIGCD  161 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~-~~~v~~~~-g--~~~~a~~vI~a~  161 (184)
                                   .+  .--...+.+.|.+.  |++++.++++++++..+   ++ .+.+...+ |  +++++|.|++|.
T Consensus        64 -------------~d--~~~~~~l~~~l~~~--GI~i~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          64 -------------MD--AEIRKQFQRSLEKQ--GMKFKLKTKVVGVDTSG---DGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             -------------SC--HHHHHHHHHHHHHS--SCCEECSEEEEEEECSS---SSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             -------------hh--hcchhhhhhhhhcc--cceEEcCCceEEEEEcc---CeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence                         00  00023455555554  89999999999999876   33 13444433 3  468999999884

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.6e-11  Score=71.78  Aligned_cols=94  Identities=19%  Similarity=0.237  Sum_probs=67.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA   85 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
                      .+++|||||+.|+-+|..|++.|.+|+++|+.+.+-+.                                          
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------------------------------   60 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS------------------------------------------   60 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT------------------------------------------
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc------------------------------------------
Confidence            47999999999999999999999999999997653100                                          


Q ss_pred             eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE---ecC------cEEEeeE
Q 030042           86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL---VDG------TIVKTKF  156 (184)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~---~~g------~~~~a~~  156 (184)
                                   .+  .--...+.+.+.+.  |++++.+++++++...+   ++ +.+..   ..|      ..+.+|.
T Consensus        61 -------------~d--~~~~~~~~~~l~~~--Gv~i~~~~~v~~i~~~~---~g-~~v~~~~~~~g~~~~~~~~~~~D~  119 (125)
T d3grsa2          61 -------------FD--SMISTNCTEELENA--GVEVLKFSQVKEVKKTL---SG-LEVSMVTAVPGRLPVMTMIPDVDC  119 (125)
T ss_dssp             -------------SC--HHHHHHHHHHHHHT--TCEEETTEEEEEEEEET---TE-EEEEEEECCTTSCCEEEEEEEESE
T ss_pred             -------------hh--hHHHHHHHHHHHHC--CCEEEeCCEEEEEEEcC---Ce-EEEEEEEccCCcCcCccccccCCE
Confidence                         00  00023344445443  89999999999998876   33 44332   233      2567999


Q ss_pred             EEecCC
Q 030042          157 LIGCDG  162 (184)
Q Consensus       157 vI~a~G  162 (184)
                      |+.|+|
T Consensus       120 vl~a~G  125 (125)
T d3grsa2         120 LLWAIG  125 (125)
T ss_dssp             EEECSC
T ss_pred             EEEEeC
Confidence            999998

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.8e-12  Score=83.36  Aligned_cols=51  Identities=18%  Similarity=0.175  Sum_probs=40.6

Q ss_pred             CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch---HHHhhhCCCC
Q 030042          119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS---TVAWWLGLSE  175 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s---~~~~~~~~~~  175 (184)
                      +++++.+++|++++.++      -.|.+++|+++.+|.||+|+|+..   .+.+..++..
T Consensus        97 gI~~~~g~~V~~id~~~------~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~  150 (213)
T d1m6ia1          97 GVAVLTGKKVVQLDVRD------NMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEI  150 (213)
T ss_dssp             EEEEEETCCEEEEEGGG------TEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCB
T ss_pred             CeEEEeCCEEEEeeccC------ceeeeccceeeccceEEEeeeeecchhhhhhccchhh
Confidence            78999999999998765      458889999999999999999643   2445555543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=3.1e-12  Score=86.54  Aligned_cols=40  Identities=43%  Similarity=0.618  Sum_probs=36.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++|||+||||||+|+++|..|++.|.+|+|||+.+..++.
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~   43 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGT   43 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceE
Confidence            5899999999999999999999999999999998776543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.21  E-value=2.4e-11  Score=87.67  Aligned_cols=34  Identities=26%  Similarity=0.488  Sum_probs=32.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      .++||||||+|++|+.+|+.|++.|.+|+|+|++
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4699999999999999999999999999999986

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=8.3e-12  Score=87.65  Aligned_cols=40  Identities=35%  Similarity=0.566  Sum_probs=37.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      ++|++|||||++||++|+.|++.|.+|+|+|+++..|+..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~   40 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA   40 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGG
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccce
Confidence            4899999999999999999999999999999999887754

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.18  E-value=1.4e-11  Score=82.88  Aligned_cols=38  Identities=34%  Similarity=0.586  Sum_probs=35.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR   41 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~   41 (184)
                      ++|||+||||||+|+++|..|+|.|.+|+|||+....+
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~   39 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE   39 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence            68999999999999999999999999999999976543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.15  E-value=2e-11  Score=81.90  Aligned_cols=40  Identities=43%  Similarity=0.645  Sum_probs=36.8

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++|||+||||||+|+++|..+++.|.+|+|||+....++.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~   41 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT   41 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCe
Confidence            5799999999999999999999999999999998877654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.1e-11  Score=87.02  Aligned_cols=41  Identities=37%  Similarity=0.631  Sum_probs=37.7

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .++.+|+|||||++||++|+.|+++|++|+|+|+.+.+|+.
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr   43 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR   43 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCccc
Confidence            35679999999999999999999999999999999988764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.14  E-value=9.6e-11  Score=84.32  Aligned_cols=33  Identities=36%  Similarity=0.561  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .||+|||+|++|+.+|+.|++.|++|+|||+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            599999999999999999999999999999963

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.14  E-value=2.8e-11  Score=83.46  Aligned_cols=38  Identities=34%  Similarity=0.724  Sum_probs=34.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCCCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDGLRGT   43 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~~~~~   43 (184)
                      .||+|||||++||++|+.|+++|+ +|+|+|+.+.+++.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~   39 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR   39 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTT
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCce
Confidence            389999999999999999999997 69999999888754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.12  E-value=2.1e-10  Score=74.66  Aligned_cols=106  Identities=19%  Similarity=0.238  Sum_probs=67.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      +.+|+|||||++|+-+|..|++.|.++.+++..+.....-   .. +..         ...+..... ...         
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~---~~-~~l---------~~~~~~~~~-~~~---------   59 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY---DR-PPL---------SKDFMAHGD-AEK---------   59 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB---CS-GGG---------GTTHHHHCC-GGG---------
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccch---hh-HHH---------hhhhhhhhh-hhh---------
Confidence            4579999999999999999999998887777654432110   00 000         000000000 000         


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH  164 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~  164 (184)
                        ...                      .+. ...+++++.+++++++....      ..+.+.+|+++.+|+||.|+|..
T Consensus        60 --~~~----------------------~~~-~~~~i~~~~~~~v~~i~~~~------~~~~~~~g~~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          60 --IRL----------------------DCK-RAPEVEWLLGVTAQSFDPQA------HTVALSDGRTLPYGTLVLATGAA  108 (183)
T ss_dssp             --SBC----------------------CGG-GSTTCEEEETCCEEEEETTT------TEEEETTSCEEECSEEEECCCEE
T ss_pred             --HHH----------------------HHh-hcCCeEEEEecccccccccc------ceeEecCCcEeeeeeEEEEEEEE
Confidence              000                      000 01268889999999988765      56778899999999999999964

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.12  E-value=7.3e-11  Score=82.82  Aligned_cols=39  Identities=41%  Similarity=0.564  Sum_probs=35.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      .+|+|||||++||++|+.|++.|++|+|+|+.+.+++..
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~   40 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKL   40 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCce
Confidence            369999999999999999999999999999999887643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.11  E-value=2.7e-11  Score=81.76  Aligned_cols=39  Identities=33%  Similarity=0.564  Sum_probs=35.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      .+||++||||||+|+++|..|++.|.+|+|||+.+..++
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG   43 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGG   43 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCC
Confidence            479999999999999999999999999999999877654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=3.7e-11  Score=80.42  Aligned_cols=38  Identities=26%  Similarity=0.411  Sum_probs=34.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG   42 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~   42 (184)
                      ++||++||||||+|+.+|..|++.|.+|+|+|++. .++
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GG   38 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGG   38 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCC
Confidence            57999999999999999999999999999999853 443

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=7.5e-11  Score=79.78  Aligned_cols=36  Identities=31%  Similarity=0.463  Sum_probs=33.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      +||++||||||+|+++|..+++.|.+|+|+|+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            699999999999999999999999999999987653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.03  E-value=1.5e-10  Score=81.68  Aligned_cols=40  Identities=25%  Similarity=0.531  Sum_probs=36.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~   44 (184)
                      +.+|+|||||++||++|+.|++.|.+|+|+|+++..|+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCee
Confidence            4689999999999999999999999999999999887643

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.02  E-value=1.2e-10  Score=83.74  Aligned_cols=39  Identities=28%  Similarity=0.363  Sum_probs=35.4

Q ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      |. .+|||+|||+|++|+++|..|++.|++|+|+|++...
T Consensus         1 md-~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MD-IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CC-SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CC-CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            55 5799999999999999999999999999999997543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.00  E-value=1.8e-10  Score=77.19  Aligned_cols=36  Identities=28%  Similarity=0.555  Sum_probs=33.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+||++||||||+|+.+|..+++.|.+|+|||+...
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~   37 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            479999999999999999999999999999998653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3e-10  Score=76.01  Aligned_cols=36  Identities=33%  Similarity=0.473  Sum_probs=33.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .+||++||||||+|+.+|..+++.|.+|+|+|+...
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~   37 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHKL   37 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCC
Confidence            479999999999999999999999999999998643

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.96  E-value=6.1e-11  Score=80.47  Aligned_cols=30  Identities=40%  Similarity=0.495  Sum_probs=26.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      +|+|||||++|+++|++|+++|.+|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            599999999999999999999988766665

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=1.8e-10  Score=77.94  Aligned_cols=39  Identities=21%  Similarity=0.222  Sum_probs=35.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCC-------CCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLG-------VEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g-------~~v~vie~~~~~~~~   43 (184)
                      .++|+|||+||+||++|+.|+++|       ++|+|+|+.+.+++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~   47 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL   47 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCe
Confidence            368999999999999999999987       479999999988765

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=5.3e-10  Score=73.34  Aligned_cols=39  Identities=31%  Similarity=0.512  Sum_probs=34.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~~~~~   43 (184)
                      ..+|+||||||+||.+|++|+++|+ +|+||||.+..++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~   43 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL   43 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccch
Confidence            4589999999999999999999998 59999998877553

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.91  E-value=4.3e-10  Score=75.28  Aligned_cols=35  Identities=26%  Similarity=0.575  Sum_probs=33.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+||++||||||+|+.+|..+++.|.+|+|+|+..
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            57999999999999999999999999999999864

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.88  E-value=5.7e-09  Score=66.61  Aligned_cols=113  Identities=22%  Similarity=0.224  Sum_probs=67.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCce
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGAT   86 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (184)
                      +|+|||||++|+-+|..|++ +.+|+|+|+.+.+....      +...+.+          ........           
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~------~~~~~~~----------~~~~~~~~-----------   53 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSK------PMLSHYI----------AGFIPRNR-----------   53 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCS------TTHHHHH----------TTSSCGGG-----------
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccc------cchhhhh----------hhhhhhhh-----------
Confidence            69999999999999999975 67999999876532110      0000111          00000000           


Q ss_pred             eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-
Q 030042           87 QETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-  165 (184)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-  165 (184)
                                    . ...   ..+.+.+.  +++++.+++++.+....      . +.+.++.++.+|.+|.|+|... 
T Consensus        54 --------------~-~~~---~~~~~~~~--~v~~~~~~~v~~i~~~~------~-~~~~~~~~i~~D~li~a~G~~~~  106 (167)
T d1xhca1          54 --------------L-FPY---SLDWYRKR--GIEIRLAEEAKLIDRGR------K-VVITEKGEVPYDTLVLATGAPNV  106 (167)
T ss_dssp             --------------G-CSS---CHHHHHHH--TEEEECSCCEEEEETTT------T-EEEESSCEEECSEEEECCCEECC
T ss_pred             --------------h-hHH---HHHHHHhc--cceeeeecccccccccc------c-cccccccccccceeEEEEEecCC
Confidence                          0 000   01122222  78889999998887553      2 3445666899999999999754 


Q ss_pred             HHHhhhCCC
Q 030042          166 TVAWWLGLS  174 (184)
Q Consensus       166 ~~~~~~~~~  174 (184)
                      .+.+..++.
T Consensus       107 ~~~~~~gl~  115 (167)
T d1xhca1         107 DLARRSGIH  115 (167)
T ss_dssp             HHHHHTTCC
T ss_pred             chhhhcCce
Confidence            344445543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.88  E-value=1.3e-09  Score=73.66  Aligned_cols=39  Identities=26%  Similarity=0.434  Sum_probs=35.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ..+|+||||||+|+++|..|+++|++|+|+|+.+..++.
T Consensus        49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~   87 (233)
T d1djqa3          49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGH   87 (233)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCc
Confidence            469999999999999999999999999999999887654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.86  E-value=1.2e-09  Score=74.84  Aligned_cols=33  Identities=33%  Similarity=0.518  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ||++||||||+|+.+|..+++.|.+|+|+|+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            899999999999999999999999999999854

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.83  E-value=2.4e-09  Score=73.44  Aligned_cols=40  Identities=30%  Similarity=0.459  Sum_probs=37.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      ++||++|||||++|+.+|..+++.|.+|+++|+.+..++.
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~   80 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS   80 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccc
Confidence            5799999999999999999999999999999998877654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.82  E-value=2.2e-09  Score=69.39  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV--EPLVLEKSDGL   40 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~~   40 (184)
                      .+|+|||||++|+.+|..|++.+.  +|+++|+.+..
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            379999999999999999999874  78999987653

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=1.4e-09  Score=76.53  Aligned_cols=40  Identities=30%  Similarity=0.502  Sum_probs=35.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCcc
Q 030042            5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTG   44 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~   44 (184)
                      ++||+||||||+|+++|+.|+++  |++|+|+|+.+.+++..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   91 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS   91 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCccee
Confidence            57999999999999999999964  99999999998876543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.82  E-value=2.6e-08  Score=65.33  Aligned_cols=108  Identities=18%  Similarity=0.204  Sum_probs=66.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            7 DVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      +|+|||||++|+.+|..|++.+  .+|+++|+.+.....       +.....+         .....             
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~-------~~~~~~~---------l~~~~-------------   52 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-------SAGMQLY---------LEGKV-------------   52 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-------GGGHHHH---------HTTSS-------------
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccccc-------ccCcchh---------hcccc-------------
Confidence            5999999999999999999874  479999987654211       1001100         00000             


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE-ecCc--EEEeeEEEecC
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDGT--IVKTKFLIGCD  161 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g~--~~~a~~vI~a~  161 (184)
                        ...  .       ........    .+.+.  +++++.+++|++++..+   +. +.+.. .+|+  ++.+|.+|.|+
T Consensus        53 --~~~--~-------~~~~~~~~----~l~~~--gi~v~~~~~V~~i~~~~---~~-v~~~~~~~g~~~~~~~D~li~a~  111 (198)
T d1nhpa1          53 --KDV--N-------SVRYMTGE----KMESR--GVNVFSNTEITAIQPKE---HQ-VTVKDLVSGEERVENYDKLIISP  111 (198)
T ss_dssp             --CCG--G-------GSBSCCHH----HHHHT--TCEEEETEEEEEEETTT---TE-EEEEETTTCCEEEEECSEEEECC
T ss_pred             --cch--H-------HHHHhhHH----HHHHC--CcEEEEeeceeeEeecc---cc-ceeeecccccccccccceeeEee
Confidence              000  0       00011122    22223  89999999999998775   44 55553 4443  57899999999


Q ss_pred             Ccc
Q 030042          162 GIH  164 (184)
Q Consensus       162 G~~  164 (184)
                      |..
T Consensus       112 G~~  114 (198)
T d1nhpa1         112 GAV  114 (198)
T ss_dssp             CEE
T ss_pred             cce
Confidence            964

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.82  E-value=4.4e-10  Score=75.95  Aligned_cols=33  Identities=27%  Similarity=0.408  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC---CCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLG---VEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g---~~v~vie~~~   38 (184)
                      ++|+||||||+|+++|..+++.+   .+|+++|+..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            58999999999999999888765   4699999853

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.82  E-value=1.7e-09  Score=72.78  Aligned_cols=38  Identities=26%  Similarity=0.279  Sum_probs=33.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCc
Q 030042            6 KDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGT   43 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~   43 (184)
                      .+|+||||||+|+++|..|++.  |.+|+|||+.+.+++.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~   41 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGL   41 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCce
Confidence            4799999999999999999876  6789999999887653

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.80  E-value=2.7e-09  Score=71.89  Aligned_cols=35  Identities=31%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ++||++|||+||+|+++|..+++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            68999999999999999999999886 588888754

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.77  E-value=2.8e-09  Score=72.12  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      ++||++|||+||+|+++|..+++.|. +|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            68999999999999999999999886 5889998764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.76  E-value=5.8e-08  Score=62.68  Aligned_cols=36  Identities=33%  Similarity=0.533  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      .-||+|||||++|+-+|..|++.|.++.|++..+.+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            458999999999999999999999999998876653

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.68  E-value=7e-09  Score=74.36  Aligned_cols=34  Identities=35%  Similarity=0.549  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .||++|||+|++|+.+|..|++.|.+|+|||++.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            5899999999999999999999999999999974

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.68  E-value=2e-07  Score=58.60  Aligned_cols=93  Identities=14%  Similarity=0.039  Sum_probs=66.3

Q ss_pred             cEEEE--CCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            7 DVVII--GAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         7 dv~Ii--GgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      .++|+  |||..|+.+|..|++.|.+|+++++.+.+...                      +.                 
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~----------------------~~-----------------   81 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM----------------------HF-----------------   81 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH----------------------HH-----------------
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc----------------------cc-----------------
Confidence            45555  99999999999999999999999997643110                      00                 


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE------------------
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL------------------  146 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~------------------  146 (184)
                                        ......+.+.|.+.  ++++++++++.++....      +.+..                  
T Consensus        82 ------------------~~~~~~~~~~l~~~--GV~i~~~~~v~~i~~~~------v~l~~~~~~~~~~v~~~~g~~~~  135 (156)
T d1djqa2          82 ------------------TLEYPNMMRRLHEL--HVEELGDHFCSRIEPGR------MEIYNIWGDGSKRTYRGPGVSPR  135 (156)
T ss_dssp             ------------------TTCHHHHHHHHHHT--TCEEEETEEEEEEETTE------EEEEETTCSCSCCCCCCTTSCSS
T ss_pred             ------------------hhHHHHHHHHHhhc--cceEEeccEEEEecCcc------eEEEeeeccccceeeeeeEEEec
Confidence                              01135667777765  89999999999998653      22221                  


Q ss_pred             -e--cCcEEEeeEEEecCCcc
Q 030042          147 -V--DGTIVKTKFLIGCDGIH  164 (184)
Q Consensus       147 -~--~g~~~~a~~vI~a~G~~  164 (184)
                       .  +...+.+|.+|+++|.+
T Consensus       136 ~~~~~~~~le~D~vilvtgR~  156 (156)
T d1djqa2         136 DANTSHRWIEFDSLVLVTGRH  156 (156)
T ss_dssp             CCCCCCEEEECSEEEEESCEE
T ss_pred             ccCCccCcEecceEEEEecCC
Confidence             1  12368899999999864

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.67  E-value=8.9e-09  Score=74.45  Aligned_cols=35  Identities=34%  Similarity=0.512  Sum_probs=32.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLG-VEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~   38 (184)
                      +.||++|||||.+|+.+|..|++.+ ++|+|||++.
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            4699999999999999999999875 7999999975

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.65  E-value=1.2e-08  Score=73.86  Aligned_cols=35  Identities=34%  Similarity=0.481  Sum_probs=32.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLG-VEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~   38 (184)
                      +.||++|||||++|+.+|..|++.+ .+|+|||++.
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            4699999999999999999999987 7999999985

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1.4e-07  Score=59.77  Aligned_cols=50  Identities=12%  Similarity=0.128  Sum_probs=35.0

Q ss_pred             eHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeEEEecCC
Q 030042          105 HRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKFLIGCDG  162 (184)
Q Consensus       105 ~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~vI~a~G  162 (184)
                      .+......+...  ++++..++++..+..+.      +.+...+. +.+.||.||+|+|
T Consensus       110 ~~~~~~~~~~~~--gv~~~~~~~v~~i~~~g------v~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         110 TGWIHRTTLLSR--GVKMIPGVSYQKIDDDG------LHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             THHHHHHHHHHT--TCEEECSCEEEEEETTE------EEEEETTEEEEECCSEEEECCC
T ss_pred             hhHHHHHHHhhC--CeEEEeeeEEEEEcCCC------CEEecCCeEEEEECCEEEECCC
Confidence            345555555555  78999999999887543      44543322 3688999999999

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.51  E-value=2.4e-08  Score=71.23  Aligned_cols=33  Identities=36%  Similarity=0.522  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .||++|||||++|+.+|..|++. .+|+|||++.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            58999999999999999999976 8999999986

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=3.8e-06  Score=47.80  Aligned_cols=36  Identities=36%  Similarity=0.506  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      ..+|+|+|.|.+|+++|..|.++|.+|.++|.+...
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            357999999999999999999999999999986653

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=5.5e-05  Score=45.37  Aligned_cols=35  Identities=29%  Similarity=0.542  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..+|+|||||-+++-.|..|++...+|+++-|.+.
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            45899999999999999999999889999988654

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=7.9e-05  Score=44.65  Aligned_cols=91  Identities=20%  Similarity=0.241  Sum_probs=64.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG   84 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
                      ..+|+|||||-+.+-.|..|++...+|+++-|.+.....                                         
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~-----------------------------------------   68 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKAD-----------------------------------------   68 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSC-----------------------------------------
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccccc-----------------------------------------
Confidence            358999999999999999999998899999886543111                                         


Q ss_pred             ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEe
Q 030042           85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIG  159 (184)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~  159 (184)
                                            +.+.+.+.+. ++++++++++++++.-++   .....+...   +|  +++.+|.|.+
T Consensus        69 ----------------------~~~~~~~~~~-~~I~v~~~~~v~~i~G~~---~~v~~v~l~~~~tge~~~l~vdgvFv  122 (126)
T d1fl2a2          69 ----------------------QVLQDKLRSL-KNVDIILNAQTTEVKGDG---SKVVGLEYRDRVSGDIHNIELAGIFV  122 (126)
T ss_dssp             ----------------------HHHHHHHHTC-TTEEEESSEEEEEEEESS---SSEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             ----------------------cccccccccc-cceeEEcCcceEEEEccc---cceeeEEEEECCCCCEEEEECCEEEE
Confidence                                  2233333332 478999999999998764   221334443   34  3688999988


Q ss_pred             cCC
Q 030042          160 CDG  162 (184)
Q Consensus       160 a~G  162 (184)
                      +-|
T Consensus       123 ~IG  125 (126)
T d1fl2a2         123 QIG  125 (126)
T ss_dssp             CSC
T ss_pred             EeC
Confidence            766

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.96  E-value=3.3e-06  Score=54.20  Aligned_cols=33  Identities=27%  Similarity=0.292  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..++|||+|..|+++|..|++.|++|.++++.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            479999999999999999999999999999864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.94  E-value=4.2e-06  Score=53.40  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|+|||+|..|..+|..|+++|++|+|+||..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            579999999999999999999999999999875

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.91  E-value=4.4e-05  Score=47.41  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVE-PLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~~   39 (184)
                      -+|+|||||-+|+=+|..|.+.|.+ |+++.+.+.
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            4799999999999999999999875 888887543

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.89  E-value=0.00027  Score=42.44  Aligned_cols=36  Identities=22%  Similarity=0.478  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      ..+|+|||||-+++-.|..|++.-.+|+++-|.+.+
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            468999999999999999999998899999887653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.79  E-value=1.1e-05  Score=48.86  Aligned_cols=32  Identities=22%  Similarity=0.408  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            68999999999999999999999999999975

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.3e-05  Score=51.88  Aligned_cols=37  Identities=22%  Similarity=0.478  Sum_probs=33.1

Q ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |+-..|.|||+|..|...|..+++.|++|+++|+++.
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            3446899999999999999999999999999998753

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=1.7e-05  Score=49.82  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      +|+|||+|..|..+|..|++.|.+|++++|.+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            6999999999999999999999999999997653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.69  E-value=2.4e-05  Score=47.40  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +++|||+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            68999999999999999999999999999875

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.60  E-value=5.5e-05  Score=46.86  Aligned_cols=39  Identities=26%  Similarity=0.276  Sum_probs=33.5

Q ss_pred             CCCccccEEEEC-CCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIG-AGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |+.....|.||| .|..|..+|..|.+.|++|.++|+...
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            333456899999 699999999999999999999998653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.58  E-value=8.1e-05  Score=47.19  Aligned_cols=35  Identities=29%  Similarity=0.504  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..+|+|||+|.+|+.+|..+.+.|..|.++|.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            35899999999999999999999999999998765

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.57  E-value=2.6e-05  Score=50.12  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..|.|||+|..|...|..+++.|++|+++|+++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999865

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.56  E-value=4.9e-05  Score=55.69  Aligned_cols=47  Identities=30%  Similarity=0.410  Sum_probs=42.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeec
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFA   50 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~   50 (184)
                      .+|||+|+|-|..=..+|..|++.|.+|+-+|+++..|+..++..+.
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~~   51 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFS   51 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHH
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeHH
Confidence            47999999999999999999999999999999999998887776643

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.56  E-value=2e-05  Score=50.85  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +.+|+|||+|.-|.++|..|++.|.+|.++.+++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            3479999999999999999999999999999864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.41  E-value=0.0001  Score=46.08  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+|+|||+|.+|+.++..+.+.|..|.++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            4689999999999999999999999999999864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.37  E-value=0.00012  Score=45.44  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      ++.+|.|||+|-.|.++|+.|++.++ +++++|.++.
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            57899999999999999999988876 7999997653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.27  E-value=0.00011  Score=47.83  Aligned_cols=32  Identities=28%  Similarity=0.360  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|.|||.|..|+.+|..|++.|.+|..+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            48999999999999999999999999999864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.26  E-value=0.00021  Score=41.78  Aligned_cols=35  Identities=23%  Similarity=0.222  Sum_probs=31.5

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +...|+|||+|..|...|..|.+.|.+|++++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            34689999999999999999999999999998754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.24  E-value=0.00014  Score=45.63  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|.|||.|..|.++|..|++.|++|+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            58999999999999999999999999999864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.23  E-value=0.00017  Score=44.29  Aligned_cols=34  Identities=26%  Similarity=0.558  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      +.+|.|||+|-.|.++|+.|++.++  +++++|++.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            5689999999999999999999875  799999764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00021  Score=44.08  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=31.2

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +...++|||||..|+.-|..|.+.|.+|+|+.+..
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~   46 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            34589999999999999999999999999997653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.09  E-value=0.00038  Score=44.05  Aligned_cols=34  Identities=18%  Similarity=0.372  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +.+|-|||-|..|..+|..|.+.|++|.++|+.+
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            4589999999999999999999999999999875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.08  E-value=0.00024  Score=45.25  Aligned_cols=31  Identities=32%  Similarity=0.358  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      +|.|||+|..|.++|..|++.|.+|.++.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            6899999999999999999999999999764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.03  E-value=0.00066  Score=39.18  Aligned_cols=35  Identities=14%  Similarity=0.257  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..+|+|||+|.+|.-.|..|++...+++++-+.+.
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            35899999999999999999998888887776543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00049  Score=44.53  Aligned_cols=37  Identities=35%  Similarity=0.485  Sum_probs=32.3

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      |+|+  +|+|+|| |..|..++..|.++|++|+++.|++.
T Consensus         1 m~~k--kIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           1 MAVK--KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCCC--EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCC--EEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            6654  6999995 99999999999999999999988653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.98  E-value=0.0004  Score=42.65  Aligned_cols=34  Identities=32%  Similarity=0.613  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      ..+|.|||+|-.|.++|+.|...++  +++++|..+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            4689999999999999999998876  699999754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.95  E-value=0.00043  Score=43.43  Aligned_cols=33  Identities=36%  Similarity=0.510  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -.|+|+|+|+.|+.++..++..|.+|+++|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            369999999999999998888999999999864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.92  E-value=0.00044  Score=44.16  Aligned_cols=32  Identities=34%  Similarity=0.494  Sum_probs=29.2

Q ss_pred             cEEEE-CCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVII-GAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~Ii-GgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|.|| |+|..|.++|..|++.|++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48899 669999999999999999999999875

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.92  E-value=0.00036  Score=43.52  Aligned_cols=32  Identities=25%  Similarity=0.322  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|.+||-|..|..+|..|.+.|++|.++|+.+
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            69999999999999999999999999999864

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00079  Score=41.76  Aligned_cols=35  Identities=20%  Similarity=0.429  Sum_probs=30.6

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      ...+|.|||+|-.|.++|+.|...++  +++++|.+.
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            34589999999999999999999877  699999764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.84  E-value=0.00093  Score=41.48  Aligned_cols=35  Identities=17%  Similarity=0.419  Sum_probs=31.1

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      ++.+|.|||+|-.|.++|+.|...++  +++++|...
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            35699999999999999999999987  799999863

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.001  Score=40.96  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .++|+|.|..|..++..|.++|.+|+++|.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            69999999999999999999999999999865

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00081  Score=42.22  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+|+|+|+|-++.++++.|.+.|.++.|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4589999999999999999999999999998864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00074  Score=42.39  Aligned_cols=33  Identities=33%  Similarity=0.532  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      -.|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            369999999999999999988998 699999864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.0017  Score=37.67  Aligned_cols=36  Identities=28%  Similarity=0.536  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      .+.|.|+|||=-|.++|..+.+.|+++.++|+++..
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            367999999999999999999999999999987653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.72  E-value=0.00058  Score=42.48  Aligned_cols=32  Identities=28%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|-|||-|..|..+|..|.+.|++|.++|+.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            48999999999999999999999999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00093  Score=41.81  Aligned_cols=34  Identities=35%  Similarity=0.477  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      -.|+|+|+|+.|+.++..++..|.+|+++++++.
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            4699999999999988888788999999998754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.69  E-value=0.00092  Score=41.67  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -.|+|+|+|+.|+.++..++..|.+|+++|+.+
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            369999999999999988888899999999864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.67  E-value=0.00099  Score=42.08  Aligned_cols=32  Identities=28%  Similarity=0.507  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|-|||-|..|..+|..|.+.|++|.++|+..
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            59999999999999999999999999999864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.66  E-value=0.0014  Score=40.17  Aligned_cols=34  Identities=15%  Similarity=0.399  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ..+|.|||+|-.|.++|+.|.+.++ +++++|..+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4689999999999999999988876 799999755

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00062  Score=45.48  Aligned_cols=34  Identities=29%  Similarity=0.410  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +..|+|||+|..|..+|..|++.|. +++++|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            4689999999999999999999999 699999765

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.65  E-value=0.001  Score=40.54  Aligned_cols=33  Identities=27%  Similarity=0.471  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      .+|.|||+|-.|.++|+.|...++  +++++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            369999999999999999998887  699999754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.64  E-value=0.0013  Score=40.04  Aligned_cols=33  Identities=33%  Similarity=0.574  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~   39 (184)
                      +|.|||+|-.|.++|+.|+..+.  ++.++|.++.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            58999999999999999998875  7999998654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.63  E-value=0.001  Score=40.47  Aligned_cols=33  Identities=33%  Similarity=0.509  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      +|.|||+|-.|.++|+.|++.++ +++++|....
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            78999999999999999998876 8999997553

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.61  E-value=0.0013  Score=39.97  Aligned_cols=33  Identities=27%  Similarity=0.439  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~   39 (184)
                      +|.|||+|-.|.++|+.|...+.  +++++|....
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            79999999999999999998876  6999997654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.60  E-value=0.0013  Score=41.10  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      +|.|||.|..|.++|..|.+.|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            69999999999999999999987  566678754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.60  E-value=0.0013  Score=41.16  Aligned_cols=35  Identities=20%  Similarity=0.274  Sum_probs=30.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      +..+|+|+|+|-++.++++.|.+.|. ++.|+.|..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            35689999999999999999999997 799998854

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.59  E-value=0.0011  Score=40.58  Aligned_cols=33  Identities=30%  Similarity=0.496  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      .+|.|||+|-.|.++|+.|..++.  +++++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            368999999999999999998875  799999754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.57  E-value=0.0016  Score=39.74  Aligned_cols=32  Identities=38%  Similarity=0.533  Sum_probs=28.4

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      +|.|||+ |..|.++|+.|+.++.  ++.++|..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            5999995 9999999999999885  799999864

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.50  E-value=0.001  Score=42.68  Aligned_cols=31  Identities=23%  Similarity=0.424  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|+|||.|..|+.+|..++ .|.+|+.+|-++
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            5899999999999999887 599999999765

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.48  E-value=0.0011  Score=40.23  Aligned_cols=32  Identities=19%  Similarity=0.207  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      +|.|||+|-.|.++|+.|+..+.  +++++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            68999999999999999998775  699999754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.47  E-value=0.0016  Score=39.62  Aligned_cols=32  Identities=25%  Similarity=0.360  Sum_probs=27.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      +|.|||+ |..|.++|+.|...++  +++++|...
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            6899996 9999999999998877  689999753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.45  E-value=0.0014  Score=41.47  Aligned_cols=33  Identities=39%  Similarity=0.533  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      -.|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccc
Confidence            469999999999999998888897 689999864

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.39  E-value=0.0017  Score=39.82  Aligned_cols=33  Identities=27%  Similarity=0.261  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      +|.|||.|..|..+|..|.++|++++++++.+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            589999999999999999999999999987654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0024  Score=39.79  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      -.|+|+|+|+.|+.++..+...|.++++++..+.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            3699999999999999888888999989987653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.30  E-value=0.0023  Score=40.23  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      -.|+|+|+|+.|++++..++..|. +|+++|+++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            479999999999999998888897 688899764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.28  E-value=0.0021  Score=38.90  Aligned_cols=32  Identities=31%  Similarity=0.484  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~   38 (184)
                      ++.|||+|-.|.++|+.|...++  ++.++|.+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            68999999999999999988765  799999754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0032  Score=33.82  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..|.|+|||=-|.+++....+.|+++.++|..+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            3689999999999999999999999999998654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0041  Score=39.31  Aligned_cols=35  Identities=29%  Similarity=0.334  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      ..+|+|+|+|-++.++++.|.++|. ++.|+.|.+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            3589999999999999999999988 6888898654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.05  E-value=0.0037  Score=39.25  Aligned_cols=34  Identities=18%  Similarity=0.384  Sum_probs=28.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVE-PLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~~   39 (184)
                      -.|+|+|+|+.|++++..+...|.+ |++.|..+.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            3699999999999999999999985 667787643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.04  E-value=0.0036  Score=40.11  Aligned_cols=33  Identities=33%  Similarity=0.431  Sum_probs=27.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      -.|+|+|+|+.|+.++..++..|. +|+++|..+
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            379999999999999998877777 688888754

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.92  E-value=0.005  Score=37.26  Aligned_cols=32  Identities=22%  Similarity=0.424  Sum_probs=27.6

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHhCCC--CeEEEecc
Q 030042            6 KDVVIIG-AGIAGLATALALKRLGV--EPLVLEKS   37 (184)
Q Consensus         6 ~dv~IiG-gG~~Gl~~A~~l~~~g~--~v~vie~~   37 (184)
                      ++|.||| +|-.|.++|+.|...++  +++++|..
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            3689999 69999999999998876  68898853

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.90  E-value=0.005  Score=41.77  Aligned_cols=36  Identities=28%  Similarity=0.338  Sum_probs=31.6

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            4 VEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ++.+|+|.|| |..|..++..|.++|++|+++.|...
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            3567999997 99999999999999999999988653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.86  E-value=0.0049  Score=38.74  Aligned_cols=33  Identities=21%  Similarity=0.390  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      -|+|+|+|+.|+.+...++..|. +|+++|.++.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            49999999999999999999985 7999998654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.80  E-value=0.0036  Score=38.83  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -.|+|+|+|+.|++++..+...|.+|.+++.++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            368999999999999888888899999998754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.78  E-value=0.0084  Score=38.10  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=31.0

Q ss_pred             ccccEEEEC-CCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIG-AGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +...++|.| +|-.|..+|..|+++|.+|++++|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            346788888 68999999999999999999999975

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.76  E-value=0.0053  Score=38.57  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=29.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+|+|+|+|-++.++++.|.+.| ++.|+.|..
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            468999999999999999998877 899998853

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.72  E-value=0.005  Score=38.52  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|+|+|+|-++.++++.|.+.+.++.|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            3589999999999999999998888999999864

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.68  E-value=0.0047  Score=37.77  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLG-VEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~   38 (184)
                      ++.+||+|-.|.++|..|.+.| .++.+++|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5899999999999999888776 7899999864

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.64  E-value=0.0071  Score=40.72  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=32.1

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            5 EKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      +.+|+|+|| |..|..++..|.+.|.+|+++.|.+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            468999997 999999999999999999999986543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.63  E-value=0.0066  Score=37.14  Aligned_cols=32  Identities=28%  Similarity=0.241  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++.|||+|-.|.++|..|.+.+.++.+.++..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            58999999999999999999999999999864

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.60  E-value=0.0097  Score=41.56  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=32.7

Q ss_pred             CCCccccEEEEC-CCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            1 MAMVEKDVVIIG-AGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         1 m~~~~~dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      || ++..|+|.| +|..|..++..|.++|++|+++|+...
T Consensus        12 ~~-~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          12 PS-ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             TT-SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CC-CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            55 456799998 799999999999999999999997543

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.016  Score=33.67  Aligned_cols=37  Identities=19%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             ccccEEEECCCH-----------HHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            4 VEKDVVIIGAGI-----------AGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         4 ~~~dv~IiGgG~-----------~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      ....|+|||+||           ++.-++..|+++|++++++.-++..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            345899999995           6778888999999999999988764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.47  E-value=0.0046  Score=36.60  Aligned_cols=37  Identities=19%  Similarity=0.046  Sum_probs=28.3

Q ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCC-eEEEeccCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKR-LGVE-PLVLEKSDGL   40 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~-~g~~-v~vie~~~~~   40 (184)
                      +++.|+|+|+|-+|.+++.++.+ .+++ +..+|-++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            45789999999999999887754 3565 5566876654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.33  E-value=0.012  Score=36.25  Aligned_cols=34  Identities=35%  Similarity=0.523  Sum_probs=30.0

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEecc
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~   37 (184)
                      ....++|||+|-+|..+|..|..+|. +++|+-|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            35689999999999999999999998 58888875

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.01  Score=36.65  Aligned_cols=33  Identities=30%  Similarity=0.405  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..++|+|-|..|..+|..|+..|.+|++.|.++
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            479999999999999999999999999999875

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.015  Score=34.25  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=30.8

Q ss_pred             cccEEEECCCH-----------HHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            5 EKDVVIIGAGI-----------AGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGgG~-----------~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      ...|+|||+||           ++.-++..|+++|++++++.-++..
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            35899999997           6777888899999999999988764

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.007  Score=43.54  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ..+|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4589999999999999999999999 799999865

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.22  E-value=0.011  Score=36.93  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=26.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeE-EEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPL-VLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~-vie~~~   38 (184)
                      -.|+|+|+|+.|++++..++..|.+++ +.|.++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            369999999999999998888888654 556543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.18  E-value=0.0098  Score=37.20  Aligned_cols=33  Identities=15%  Similarity=0.295  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      .|+|+|+|+.|++++..++..|. +|+++|.++.
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            59999999999999999998887 5888887643

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.014  Score=35.28  Aligned_cols=32  Identities=38%  Similarity=0.438  Sum_probs=25.7

Q ss_pred             cEEEEC-CCHHHHHHHHHHHh-CC--CCeEEEeccC
Q 030042            7 DVVIIG-AGIAGLATALALKR-LG--VEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiG-gG~~Gl~~A~~l~~-~g--~~v~vie~~~   38 (184)
                      +|.||| +|-.|.++|+.|.. .+  -++.++|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            689999 59999999998864 34  4799999643

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.81  E-value=0.012  Score=39.35  Aligned_cols=32  Identities=31%  Similarity=0.396  Sum_probs=29.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|+|.|| |..|..++..|.++|++|+.+++..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            5999998 9999999999999999999999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.78  E-value=0.018  Score=35.78  Aligned_cols=33  Identities=18%  Similarity=0.408  Sum_probs=27.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      .|+|+|+|+.|+.++..++..+. +|+++|+.+.
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            48899999999999999988876 5777887653

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.72  E-value=0.024  Score=37.42  Aligned_cols=38  Identities=26%  Similarity=0.314  Sum_probs=30.8

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |..+..-++|-|| +-.|.++|..|+++|.+|++.+++.
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6655556777776 4589999999999999999999864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.60  E-value=0.017  Score=35.88  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=27.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      -.|+|+|+|+.|+.++..++..|. .|++.|+++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            469999999999999988887776 567778754

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.41  E-value=0.018  Score=37.27  Aligned_cols=34  Identities=21%  Similarity=0.457  Sum_probs=29.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..+|+|||+|-+|.=+|..+++.+.+++++=+..
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            3589999999999999999999998887776654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.40  E-value=0.02  Score=35.20  Aligned_cols=33  Identities=36%  Similarity=0.402  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..++|+|=|..|.-+|..|+..|.+|.|.|.+|
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            479999999999999999999999999999986

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.25  E-value=0.028  Score=34.93  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      .|+|+|+|..|++++..++..|. +|++++.++.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            48999999999999999999885 7888887654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.95  E-value=0.028  Score=34.70  Aligned_cols=32  Identities=13%  Similarity=0.242  Sum_probs=27.0

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            7 DVVIIG-AGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         7 dv~IiG-gG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      .|+|+| +|+.|+.++..+...|. +|+++++++
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             EEEEEeccccceeeeeecccccccccccccccch
Confidence            699999 49999999988888885 788888764

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.92  E-value=0.022  Score=34.82  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=22.2

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLG   28 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g   28 (184)
                      |+ +-.+|.|||+ |..|.++|+.|++..
T Consensus         1 m~-~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           1 MK-APVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CC-CCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CC-CCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            44 2349999996 999999999998764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.92  E-value=0.052  Score=37.51  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=31.1

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++..|+|+|| |..|..++..|.++|++|+++-|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            3568999996 9999999999999999999998754

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.053  Score=35.71  Aligned_cols=38  Identities=29%  Similarity=0.432  Sum_probs=29.7

Q ss_pred             CCCccccEEEE--CCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVII--GAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~Ii--GgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |..-+-++++|  |++-.|.++|..|+++|.+|++.++++
T Consensus         1 m~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            44333456666  667789999999999999999999864

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.88  E-value=0.039  Score=37.22  Aligned_cols=34  Identities=32%  Similarity=0.205  Sum_probs=28.5

Q ss_pred             ccccEEEECCC---HHHHHHHHHHHhCCCCeEEEecc
Q 030042            4 VEKDVVIIGAG---IAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         4 ~~~dv~IiGgG---~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      +..-++|-|++   -.|.++|..|+++|.+|++.++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            45678899964   47999999999999999998764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.71  E-value=0.048  Score=37.61  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             cccEEEEC-CCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIG-AGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|+|.| +|..|..++..|.+.|++|..+++...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            35899999 689999999999999999999998653

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.021  Score=42.19  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~   38 (184)
                      ...|+|||+|..|.-+|..|+..|+ +++|+|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            5789999999999999999999998 699998754

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.62  E-value=0.06  Score=36.10  Aligned_cols=38  Identities=29%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |..+..-++|-|| +-.|.++|..|+++|.+|++.+|+.
T Consensus         1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5544456777776 4679999999999999999999864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.57  E-value=0.083  Score=34.92  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=30.1

Q ss_pred             CCCccccEEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |..+..-|+|.||+ -.|..+|..|+++|.+|+++.+..
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            55455567888876 479999999999999999997654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.52  E-value=0.036  Score=36.88  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=27.9

Q ss_pred             ccEEEECCCH-HHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGI-AGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~-~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .-++|-||+- .|.++|..|+++|.+|++.+++..
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4566667654 799999999999999999999764

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.43  E-value=0.062  Score=34.80  Aligned_cols=36  Identities=31%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~   39 (184)
                      .+..+++.|+|.+|...|..+.+.+. ++.++|+.-.
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            45689999999999999999988877 6999998643

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.31  E-value=0.056  Score=33.88  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=31.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      ...+.|||.|..|..+|..|...|.+|..+|+....
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~   77 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE   77 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CceEEEeccccccccceeeeeccccccccccccccc
Confidence            346999999999999999999999999999987543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.23  E-value=0.033  Score=32.72  Aligned_cols=31  Identities=32%  Similarity=0.423  Sum_probs=26.0

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .++|+|.|..|..++..|.  +.++.++|.++.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            5899999999999999985  456888988654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=93.17  E-value=0.079  Score=33.78  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ...|+|-|.|-.|..+|..|.+.|.+|++.|.+
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            357999999999999999999999999998864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.08  E-value=0.069  Score=35.11  Aligned_cols=31  Identities=29%  Similarity=0.330  Sum_probs=25.7

Q ss_pred             EEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            8 VVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         8 v~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |+|-|| +-.|.++|..|+++|.+|++++++.
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            455565 4579999999999999999999865

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.04  E-value=0.062  Score=34.63  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=27.8

Q ss_pred             ccEEEECCCHHHHHHHHHHH--------------------hCCC-CeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALK--------------------RLGV-EPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~--------------------~~g~-~v~vie~~~~   39 (184)
                      .+|+|||+|-.++=+|..|.                    +.|. +|.++-|+..
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             ceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            48999999999999998776                    4566 5888887643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.90  E-value=0.067  Score=35.41  Aligned_cols=38  Identities=26%  Similarity=0.204  Sum_probs=29.7

Q ss_pred             CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      |.-+..-++|-|| +-.|.++|..|+++|.+|++.+++.
T Consensus         1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4433445777777 5578899999999999999999864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.90  E-value=0.065  Score=34.81  Aligned_cols=32  Identities=34%  Similarity=0.412  Sum_probs=26.6

Q ss_pred             EEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            8 VVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         8 v~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ++|-|| +-.|.++|..|+++|.+|++.+++..
T Consensus         4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            555565 56799999999999999999998764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.88  E-value=0.091  Score=34.25  Aligned_cols=35  Identities=14%  Similarity=0.197  Sum_probs=29.4

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            6 KDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         6 ~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      ..|+|.|| +-.|.++|..|+++|.+|.++++....
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            46888888 457999999999999999999986543

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.88  E-value=0.065  Score=34.79  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC--------------------CC-CeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRL--------------------GV-EPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~--------------------g~-~v~vie~~~~   39 (184)
                      .+|+|||+|-.++=+|..|.+.                    |. +|.++.|+..
T Consensus        40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            5899999999999999999873                    55 6999988654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.87  E-value=0.05  Score=30.28  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=29.6

Q ss_pred             cccEEEECCCHHHHHH-HHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLAT-ALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~-A~~l~~~g~~v~vie~~~   38 (184)
                      ...+-+||-|-+|++. |..|.++|++|.--|...
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4689999999999777 999999999999999764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.066  Score=33.10  Aligned_cols=31  Identities=29%  Similarity=0.401  Sum_probs=26.6

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEecc
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      .|+|+|+ |+.|+++...+...|.+|+++...
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEEeccccccccccccccccCccccccccc
Confidence            5999996 999998888888889999888864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.84  E-value=0.21  Score=32.49  Aligned_cols=38  Identities=26%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             ccEEEECCC-HHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042            6 KDVVIIGAG-IAGLATALALKRLGVEPLVLEKSDGLRGT   43 (184)
Q Consensus         6 ~dv~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~~~~~~   43 (184)
                      .-++|-||+ -.|.++|..|+++|.+|++.+++......
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~   46 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG   46 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcC
Confidence            356666665 47999999999999999999997765443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=92.76  E-value=0.08  Score=35.21  Aligned_cols=35  Identities=14%  Similarity=0.100  Sum_probs=29.0

Q ss_pred             cccEEEECC-C--HHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGA-G--IAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGg-G--~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..-++|.|+ |  -.|.++|..|+++|.+|++.+++..
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            456888885 2  3699999999999999999998753

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.071  Score=35.07  Aligned_cols=32  Identities=28%  Similarity=0.487  Sum_probs=25.7

Q ss_pred             cEEEE-CCCH-HHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVII-GAGI-AGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~Ii-GgG~-~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++++| ||+- .|..+|..|+++|.+|++.+++.
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45555 5544 78999999999999999999865

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=92.53  E-value=0.081  Score=35.65  Aligned_cols=31  Identities=19%  Similarity=0.252  Sum_probs=26.0

Q ss_pred             EEEEC-CCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            8 VVIIG-AGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         8 v~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++|-| ++-.|.++|..|+++|.+|++.+++.
T Consensus        28 alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            44554 67789999999999999999999875

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.30  E-value=0.038  Score=33.67  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=25.0

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCC-------CeEEEecc
Q 030042            5 EKDVVIIGA-GIAGLATALALKRLGV-------EPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGg-G~~Gl~~A~~l~~~g~-------~v~vie~~   37 (184)
                      ..+|.|||+ |..|.++|+.|++.+.       ...++|..
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            358999995 9999999999986532       35556654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.29  E-value=0.11  Score=34.49  Aligned_cols=33  Identities=27%  Similarity=0.362  Sum_probs=25.5

Q ss_pred             ccEEEE-CC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVII-GA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~Ii-Gg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++++| || +-.|.++|..|+++|.+|++.++++
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            345555 43 4478899999999999999999864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.25  E-value=0.08  Score=35.03  Aligned_cols=35  Identities=11%  Similarity=0.102  Sum_probs=27.8

Q ss_pred             ccccEEEECC-CH--HHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGA-GI--AGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGg-G~--~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +...++|.|+ |-  .|.++|..|+++|.+|++.+++.
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            3456888884 33  69999999999999999988754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.12  E-value=0.091  Score=34.65  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=27.1

Q ss_pred             ccEEEECCC---HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAG---IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG---~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .-++|.|++   -.|.++|..|+++|.+|++.++..
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            457888853   369999999999999999888764

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.097  Score=34.28  Aligned_cols=33  Identities=33%  Similarity=0.417  Sum_probs=26.3

Q ss_pred             cEEEECCCH-HHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGI-AGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~-~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      -++|.||+- .|.++|..|+++|.+|++.+++..
T Consensus         7 valITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           7 VAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            356666543 688999999999999999998753

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.01  E-value=0.11  Score=34.26  Aligned_cols=32  Identities=34%  Similarity=0.453  Sum_probs=25.8

Q ss_pred             cE-EEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DV-VIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv-~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +| +|-||+ -.|.++|..|+++|.+|++.+++.
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45 455654 479999999999999999999864

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.98  E-value=0.074  Score=32.85  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=26.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|+|.|+ |+.|+++...+...|.+|+.+++.+
T Consensus        30 ~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEEeccccchhhhhhhhcccccccccccccc
Confidence            4778795 9999999888888899998888754

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=91.97  E-value=0.13  Score=31.99  Aligned_cols=32  Identities=19%  Similarity=0.215  Sum_probs=24.6

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCC-------CeEEEecc
Q 030042            6 KDVVIIGA-GIAGLATALALKRLGV-------EPLVLEKS   37 (184)
Q Consensus         6 ~dv~IiGg-G~~Gl~~A~~l~~~g~-------~v~vie~~   37 (184)
                      .+|+|+|+ |..|..+|+.|++...       .+.++|..
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~   64 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE   64 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc
Confidence            47999996 9999999999987432       45556654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.78  E-value=0.1  Score=32.15  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=25.6

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCC-eEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALKRLGVE-PLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~   38 (184)
                      .|+|+|+|..|+.++..++..|.+ |++.+.++
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            589999999999999888888875 55566543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=0.084  Score=34.75  Aligned_cols=35  Identities=23%  Similarity=0.305  Sum_probs=27.8

Q ss_pred             cccEEEECCCH---HHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGI---AGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~---~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..-++|.||+-   .|.++|..|+++|.+|++.++++.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            34577777643   588999999999999999998753

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=91.67  E-value=0.11  Score=35.67  Aligned_cols=31  Identities=26%  Similarity=0.486  Sum_probs=27.6

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEecc
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      +|+|+|| |..|..++..|.+.|.+|+++|+.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            4889985 899999999999999999999863

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=91.65  E-value=0.16  Score=33.64  Aligned_cols=34  Identities=18%  Similarity=0.266  Sum_probs=28.6

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|.|| +-.|.++|..|+++|.+|++.+++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            346888884 5578999999999999999999865

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.15  Score=33.47  Aligned_cols=33  Identities=27%  Similarity=0.463  Sum_probs=26.7

Q ss_pred             ccEEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .-++|.||+ -.|.++|..|+++|.+|++.+++.
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            456676764 468899999999999999999864

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.60  E-value=0.15  Score=32.32  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      ..+.|||.|-.|..+|..|.--|.+|..+|+....
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   80 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK   80 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccch
Confidence            47999999999999999999899999999986543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.52  E-value=0.13  Score=34.21  Aligned_cols=32  Identities=28%  Similarity=0.411  Sum_probs=25.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++|.|| +-.|.++|..|+++|.+|++.+++.
T Consensus         8 valITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           8 VAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3555564 4578999999999999999999864

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.45  E-value=0.13  Score=34.81  Aligned_cols=33  Identities=21%  Similarity=0.172  Sum_probs=29.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      .|+|.|| |..|..++..|.++|++|..+++...
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            5888887 88999999999999999999998653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.43  E-value=0.11  Score=34.37  Aligned_cols=32  Identities=38%  Similarity=0.484  Sum_probs=26.3

Q ss_pred             cEEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++|-||+ -.|.++|..|+++|.+|++.+++.
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46666764 468899999999999999999864

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.43  E-value=0.16  Score=33.27  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=27.3

Q ss_pred             ccEEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .-++|.||+ -.|.++|..|+++|.+|++.+++.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456777864 478999999999999999999864

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=91.36  E-value=0.14  Score=34.11  Aligned_cols=32  Identities=22%  Similarity=0.205  Sum_probs=25.9

Q ss_pred             cEEEE-CC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVII-GA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~Ii-Gg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|+|| || +-.|.++|..|+++|.+|++.++.+
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~   36 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRS   36 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            46777 44 5689999999999999999987653

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.28  E-value=0.14  Score=33.73  Aligned_cols=32  Identities=28%  Similarity=0.473  Sum_probs=25.2

Q ss_pred             cEEEE-CC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVII-GA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~Ii-Gg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|+|| || +-.|.++|..|+++|.+|++.+++.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45444 54 3479999999999999999999864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.18  E-value=0.16  Score=33.47  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=27.7

Q ss_pred             cccEEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ..-++|-||+ -.|.++|..|+++|.+|++.+++.
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3457777764 468899999999999999999864

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.16  E-value=0.16  Score=32.19  Aligned_cols=35  Identities=14%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...|.|||-|-.|..+|..|..-|.+|..+|+...
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            35799999999999999999988999999997543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.05  E-value=0.13  Score=33.90  Aligned_cols=31  Identities=26%  Similarity=0.173  Sum_probs=25.4

Q ss_pred             EEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            8 VVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         8 v~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++|-|| +-.|.++|..|+++|.+|++.+++.
T Consensus         6 alITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           6 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            455565 4579999999999999999999864

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=91.01  E-value=0.18  Score=31.85  Aligned_cols=34  Identities=32%  Similarity=0.398  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..+.|||.|-.|..+|..|..-|.+|..+|+...
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCccc
Confidence            4799999999999999999989999999998644

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.00  E-value=0.19  Score=32.61  Aligned_cols=35  Identities=26%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            4 VEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +..-++|-|| +-.|.++|..|+++|.+|++.+++.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3456888886 4579999999999999999999864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=90.90  E-value=0.18  Score=33.31  Aligned_cols=32  Identities=16%  Similarity=0.274  Sum_probs=26.8

Q ss_pred             cEEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++|-||+ -.|.++|..|+++|.+|++.+++.
T Consensus        10 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_          10 TALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46777775 479999999999999999999864

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.093  Score=34.93  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=26.4

Q ss_pred             cEEEECCCH-HHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGI-AGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~-~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++|.||+- .|.++|..|+++|.+|++.+|+.
T Consensus        16 ~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          16 KVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            466777654 68899999999999999999864

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=90.78  E-value=0.21  Score=34.95  Aligned_cols=56  Identities=16%  Similarity=0.127  Sum_probs=35.6

Q ss_pred             CCeeeeCceEEEEeccCCCC--Cc-ceEEEEecCc--EEEeeE-EEecCCcc-h-HHHhhhCCC
Q 030042          119 NGTIHFSSKIAAIDSQTHDG--SS-PVFIHLVDGT--IVKTKF-LIGCDGIH-S-TVAWWLGLS  174 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~--~~-~~~v~~~~g~--~~~a~~-vI~a~G~~-s-~~~~~~~~~  174 (184)
                      +.+++.++.|++|..+++..  .. .+.+.+.+|+  ++.|+. ||+|.|+- | .+....|+.
T Consensus       239 nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIG  302 (385)
T d1cf3a1         239 NLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIG  302 (385)
T ss_dssp             TEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBS
T ss_pred             cccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhcCCC
Confidence            78999999999987654211  11 1334455674  577776 99999973 3 344444543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.77  E-value=0.15  Score=33.60  Aligned_cols=31  Identities=16%  Similarity=0.216  Sum_probs=25.4

Q ss_pred             EEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            8 VVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         8 v~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++|.|| +-.|.++|..|+++|.+|++.+++.
T Consensus        13 alITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            555576 3578899999999999999999864

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=90.74  E-value=0.15  Score=33.36  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=27.0

Q ss_pred             cEEEECCCH-HHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGI-AGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~-~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++|.||+- .|.++|..|+++|.+|++.+|+.
T Consensus         7 ~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           7 TILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            466777765 79999999999999999999865

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.66  E-value=0.13  Score=34.18  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=25.8

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIG-AGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .-++|-| ++-.|.++|..|+++|.+|++.+++.
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            3456666 45568899999999999999998764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=90.61  E-value=0.14  Score=35.46  Aligned_cols=32  Identities=25%  Similarity=0.219  Sum_probs=27.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIG-AGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -|+|.| +|..|..++..|.+.|.+|+.+++..
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            456888 89999999999999999999999853

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.58  E-value=0.19  Score=31.12  Aligned_cols=33  Identities=45%  Similarity=0.469  Sum_probs=29.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ...|+|||=|.=|-+-|.+|+-.|.+|+|==|.
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~   48 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS   48 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCC
Confidence            357999999999999999999999999886553

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.56  E-value=0.16  Score=33.28  Aligned_cols=35  Identities=23%  Similarity=0.192  Sum_probs=27.6

Q ss_pred             cccEEEECCC-HHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAG-IAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..-++|-||+ -.|.++|..|+++|.+|++.++++.
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            3346666764 4789999999999999999998653

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.53  E-value=0.18  Score=32.22  Aligned_cols=31  Identities=19%  Similarity=0.146  Sum_probs=26.5

Q ss_pred             cccEEEEC-CCHHHHHHHHHHHhCCCCeEEEe
Q 030042            5 EKDVVIIG-AGIAGLATALALKRLGVEPLVLE   35 (184)
Q Consensus         5 ~~dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie   35 (184)
                      ...|+|.| +|..|..++..|.++|.++.+++
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            35799999 49999999999999998876665

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=90.31  E-value=0.21  Score=31.25  Aligned_cols=35  Identities=23%  Similarity=0.187  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...+.|||.|..|..+|..|...|.+|..+++...
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEEeeccc
Confidence            35799999999999999999989999999998654

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.32  Score=33.21  Aligned_cols=32  Identities=31%  Similarity=0.542  Sum_probs=28.4

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCCeEEEecc
Q 030042            6 KDVVIIGA-GIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         6 ~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      .+|+|.|| |..|..++.+|.+.|.+|+++|+.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~   35 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            37899884 999999999999999999999863

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.20  E-value=0.17  Score=33.42  Aligned_cols=32  Identities=34%  Similarity=0.393  Sum_probs=26.2

Q ss_pred             cEEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++|-||+ -.|.++|..|+++|.+|++.+++.
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45666765 368899999999999999999864

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.17  E-value=0.2  Score=33.87  Aligned_cols=31  Identities=29%  Similarity=0.381  Sum_probs=27.6

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCCeEEEec
Q 030042            6 KDVVIIGA-GIAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         6 ~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      ..|+|.|| |..|..++..|.+.|.+|+.+++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            46889986 78999999999999999999986

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=90.17  E-value=0.17  Score=33.33  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=26.8

Q ss_pred             cEEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++|.||+ -.|.++|..|+++|.+|++.+++.
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           7 TVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46777765 468899999999999999999864

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.17  E-value=0.23  Score=33.65  Aligned_cols=33  Identities=33%  Similarity=0.391  Sum_probs=24.8

Q ss_pred             EEEECCC-HHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            8 VVIIGAG-IAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         8 v~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      ++|-||+ -.|.++|..|+++|.+|++.+++...
T Consensus        10 alITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~   43 (302)
T d1gz6a_          10 VLVTGAGGGLGRAYALAFAERGALVVVNDLGGDF   43 (302)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCT
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence            4444543 35788889999999999999887654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.16  E-value=0.21  Score=33.08  Aligned_cols=32  Identities=31%  Similarity=0.403  Sum_probs=25.3

Q ss_pred             cEEEE-C-CCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVII-G-AGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~Ii-G-gG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +++|| | ++-.|.++|..|+++|.+|++.+++.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45555 4 35678999999999999999999864

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.05  E-value=0.24  Score=32.52  Aligned_cols=33  Identities=27%  Similarity=0.239  Sum_probs=26.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIG-AGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      -++|-| ++-.|.++|..|+++|.+|++.+++..
T Consensus         7 ~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           7 GVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            355555 456788999999999999999998753

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.91  E-value=0.15  Score=33.72  Aligned_cols=32  Identities=16%  Similarity=0.234  Sum_probs=25.0

Q ss_pred             cEEEECCCH-HHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGI-AGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~-~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++|-||+- .|.++|..|+++|.+|++.+++.
T Consensus        10 ~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_          10 TVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            455555543 67889999999999999999864

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.74  E-value=0.2  Score=32.82  Aligned_cols=32  Identities=16%  Similarity=0.129  Sum_probs=26.1

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++|-|| +-.|.++|..|+++|.+|++.+++.
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           8 VALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4556676 4478899999999999999999865

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=89.72  E-value=0.19  Score=31.05  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=24.0

Q ss_pred             ccEEEECCCHHHHHHHHH--HHhC----CCCeEEEeccC
Q 030042            6 KDVVIIGAGIAGLATALA--LKRL----GVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~--l~~~----g~~v~vie~~~   38 (184)
                      .++.|||+|..|.+.++.  |.+.    +.+++++|.++
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            589999999999776542  3322    34899999864

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.24  Score=32.49  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=26.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++|-|| +-.|.++|..|+++|.+|++.+++.
T Consensus         8 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           8 VVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4667775 4568899999999999999999864

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.50  E-value=0.2  Score=33.82  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=25.5

Q ss_pred             cEEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++|.||+ -.|.++|..|+++|.+|++.+++.
T Consensus        14 valITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1          14 VAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46666653 468888999999999999999863

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.31  E-value=0.3  Score=30.55  Aligned_cols=35  Identities=23%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...+.|||.|..|..+|..|...|.+|..+|+...
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            35799999999999999999999999999998654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.23  Score=31.99  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             ccccEEEECC-CHHHHHHHHHHHhCCC--CeEEEeccCC
Q 030042            4 VEKDVVIIGA-GIAGLATALALKRLGV--EPLVLEKSDG   39 (184)
Q Consensus         4 ~~~dv~IiGg-G~~Gl~~A~~l~~~g~--~v~vie~~~~   39 (184)
                      ++..|+|.|| |..|..+..+|.++|.  +|+++.|++.
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            4557999996 9999999999998885  7999998654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.94  E-value=0.24  Score=34.55  Aligned_cols=29  Identities=38%  Similarity=0.617  Sum_probs=26.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEe
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLE   35 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie   35 (184)
                      +|+|.|| |..|..++..|.+.|++|+++|
T Consensus         3 kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           3 RVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            5788875 8899999999999999999997

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=88.91  E-value=0.29  Score=30.01  Aligned_cols=37  Identities=16%  Similarity=0.276  Sum_probs=27.4

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCC-eEEEeccCCC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL-GVE-PLVLEKSDGL   40 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~-v~vie~~~~~   40 (184)
                      ++.++.|||.|..|...+..+.+. +++ |.|++++...
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~   40 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL   40 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC
T ss_pred             CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc
Confidence            467899999999999888877764 454 4566776543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=88.85  E-value=0.32  Score=32.13  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=25.2

Q ss_pred             cEEEE-C-CCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVII-G-AGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~Ii-G-gG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +++|| | ++-.|.++|..|+++|.+|++.++..
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            44454 4 35568999999999999999999864

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=88.79  E-value=0.29  Score=33.35  Aligned_cols=32  Identities=28%  Similarity=0.321  Sum_probs=27.1

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042            7 DVVIIGA-GIAGLATALALKRLG-VEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g-~~v~vie~~~   38 (184)
                      +|+|.|| |..|..++..|.++| .+|..+|+..
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            4899987 889999999998888 5899998753

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.78  E-value=0.35  Score=31.84  Aligned_cols=31  Identities=26%  Similarity=0.294  Sum_probs=25.5

Q ss_pred             EEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            8 VVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         8 v~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++|.||+ -.|.++|..|+++|.+|++.+++.
T Consensus        13 ~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          13 ALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6677654 468889999999999999999864

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.73  E-value=0.19  Score=33.14  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=25.2

Q ss_pred             cEEEE-CC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVII-GA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~Ii-Gg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +++|| || +-.|.++|..|+++|.+|++.+++.
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45555 43 4578999999999999999999864

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.38  E-value=0.62  Score=24.43  Aligned_cols=34  Identities=24%  Similarity=0.490  Sum_probs=24.3

Q ss_pred             cccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...++|.|+ |-.|.++...+...|.+|+..-..+
T Consensus        32 ~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~   66 (77)
T d1o8ca2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE   66 (77)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence            345888787 6677766666667799998877643

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.37  E-value=0.14  Score=34.51  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=27.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHh----CCC-------CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKR----LGV-------EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~----~g~-------~v~vie~~~   38 (184)
                      +..++|.|+|.+|..+|..|..    .|.       ++.++|+.-
T Consensus        25 d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~G   69 (294)
T d1pj3a1          25 EHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYG   69 (294)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTE
T ss_pred             HcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCC
Confidence            4689999999999999998754    343       599999854

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=88.36  E-value=0.19  Score=34.15  Aligned_cols=34  Identities=18%  Similarity=0.341  Sum_probs=27.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHhC----CC-------CeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRL----GV-------EPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~----g~-------~v~vie~~~   38 (184)
                      +..++|.|+|.+|...|..|...    |.       ++.++|+.-
T Consensus        25 d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~G   69 (308)
T d1o0sa1          25 QEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDG   69 (308)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTE
T ss_pred             HcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCC
Confidence            56899999999999999887643    42       599999854

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.32  E-value=0.29  Score=33.37  Aligned_cols=32  Identities=28%  Similarity=0.293  Sum_probs=27.6

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            6 KDVVIIG-AGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         6 ~dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ..++|.| +|..|..++.+|.+.|.+|..+|+.
T Consensus        17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            3677776 4999999999999999999999863

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.24  E-value=0.19  Score=33.01  Aligned_cols=30  Identities=27%  Similarity=0.356  Sum_probs=23.7

Q ss_pred             EEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            9 VIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         9 ~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      +|-|| +-.|.++|..|+++|.+|++.+++.
T Consensus         5 lVTGas~GIG~aia~~la~~G~~Vvi~~r~~   35 (266)
T d1mxha_           5 VITGGARRIGHSIAVRLHQQGFRVVVHYRHS   35 (266)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            33343 3478899999999999999999874

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=88.20  E-value=0.15  Score=31.36  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=23.2

Q ss_pred             ccccEEEECCCHHHHHHHH--HHHh-CC---CCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATAL--ALKR-LG---VEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~--~l~~-~g---~~v~vie~~~   38 (184)
                      +.++|+|||||..|...+.  .|.+ ..   .+++++|-+.
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~   42 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK   42 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCCh
Confidence            5689999999987654332  2322 22   3799999764

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.19  E-value=0.28  Score=30.25  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            6 KDVVIIG-AGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         6 ~dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      .+++||| +.+.|.-+|..|+++|..|++.+..
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            5899999 5578999999999999999888754

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=88.03  E-value=0.41  Score=32.73  Aligned_cols=30  Identities=20%  Similarity=0.234  Sum_probs=25.0

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHhCCCCeEEEe
Q 030042            6 KDVVIIG-AGIAGLATALALKRLGVEPLVLE   35 (184)
Q Consensus         6 ~dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie   35 (184)
                      ..|+|.| +|..|..++..|.+.|.+|.++-
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~   33 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            3699999 79999999999999988755443

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.03  E-value=0.39  Score=29.91  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ...+.|||.|..|...|..|..-|.+|..+++...
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~   78 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS   78 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             ceeeeeccccchhHHHHHHhhhccceEEeecCCCC
Confidence            35799999999999999999888999999997543

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.86  E-value=0.17  Score=30.55  Aligned_cols=30  Identities=33%  Similarity=0.377  Sum_probs=24.9

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      +|-+||-|..|...|..|.+.|.. ++..+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~-~~~~~~   31 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPT-LVWNRT   31 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCE-EEECSS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCE-EEEeCC
Confidence            588999999999999999988864 456554

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=87.65  E-value=0.44  Score=30.89  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=29.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ...|+|-|.|-.|..+|..|.+.|.++++.|-+
T Consensus        39 g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~   71 (230)
T d1leha1          39 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN   71 (230)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEeeccc
Confidence            357999999999999999999999999988754

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=87.39  E-value=0.37  Score=32.52  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=26.0

Q ss_pred             cEEEEC-CCHHHHHHHHHHHhCCCCeEEEec
Q 030042            7 DVVIIG-AGIAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         7 dv~IiG-gG~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      +|+|.| +|..|..+...|.++|++|+.+|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            467765 589999999999999999999985

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.29  E-value=0.2  Score=32.94  Aligned_cols=31  Identities=16%  Similarity=0.219  Sum_probs=24.4

Q ss_pred             EEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            8 VVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         8 v~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++|.||+ -.|.++|..|+++|.+|++.+++.
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           9 ALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4555543 468899999999999999999864

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.17  E-value=0.46  Score=25.83  Aligned_cols=28  Identities=29%  Similarity=0.318  Sum_probs=25.1

Q ss_pred             cEEEECCCHHHHHHHHHHHhCCCCeEEE
Q 030042            7 DVVIIGAGIAGLATALALKRLGVEPLVL   34 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vi   34 (184)
                      +|+|||+|-=--++|+.|++...++.++
T Consensus         2 kVLviGsGgREHAia~~l~~s~~~v~~~   29 (90)
T d1vkza2           2 RVHILGSGGREHAIGWAFAKQGYEVHFY   29 (90)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCeEEEe
Confidence            6999999999999999999887777776

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.01  E-value=0.21  Score=30.84  Aligned_cols=31  Identities=29%  Similarity=0.310  Sum_probs=24.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEecc
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      .|+|.|| |..|+++...+...|.++++..+.
T Consensus        28 ~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~   59 (183)
T d1pqwa_          28 RVLIHSATGGVGMAAVSIAKMIGARIYTTAGS   59 (183)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             EEEEECCCCCcccccchhhccccccceeeecc
Confidence            4667686 999999888887789998887754

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.91  E-value=0.12  Score=31.62  Aligned_cols=32  Identities=13%  Similarity=0.109  Sum_probs=22.4

Q ss_pred             cEEEECCCHHHHHHHHHHH-h-C----CCCeEEEeccC
Q 030042            7 DVVIIGAGIAGLATALALK-R-L----GVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl~~A~~l~-~-~----g~~v~vie~~~   38 (184)
                      ++.|||+|..|...++... + .    .-++.++|.+.
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~   39 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDE   39 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCc
Confidence            5899999988877765422 2 1    34799999764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=86.69  E-value=0.16  Score=31.46  Aligned_cols=32  Identities=19%  Similarity=0.084  Sum_probs=25.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ...|+.||+|..-  .|..|+++|.+|+-+|-.+
T Consensus        21 ~~rvLd~GCG~G~--~a~~la~~G~~V~gvD~S~   52 (201)
T d1pjza_          21 GARVLVPLCGKSQ--DMSWLSGQGYHVVGAELSE   52 (201)
T ss_dssp             TCEEEETTTCCSH--HHHHHHHHCCEEEEEEECH
T ss_pred             CCEEEEecCcCCH--HHHHHHHcCCceEeecccH
Confidence            3579999999964  4557888999999999753

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.30  E-value=0.18  Score=33.12  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=25.6

Q ss_pred             EEEECCCH-HHHHHHHHHHhCCCCeEEEeccCC
Q 030042            8 VVIIGAGI-AGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         8 v~IiGgG~-~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ++|-|++- .|..+|..|+++|.+|++.+++..
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~   35 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFK   35 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGGG
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45666543 699999999999999999988643

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=86.28  E-value=0.81  Score=29.30  Aligned_cols=41  Identities=7%  Similarity=0.266  Sum_probs=34.8

Q ss_pred             CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042          119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~  163 (184)
                      +..+..++.+..+...+   .. +.|.+.+|+.+.+|.++.+...
T Consensus       224 ~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~~d~~~~~~~~  264 (347)
T d1b5qa1         224 DPRLQLNKVVREIKYSP---GG-VTVKTEDNSVYSADYVMVSASL  264 (347)
T ss_dssp             CTTEESSCCEEEEEECS---SC-EEEEETTSCEEEESEEEECSCH
T ss_pred             ccccccccccccccccC---cc-EEEEECCCCEEEcCEEEeecCH
Confidence            46788999999998875   44 8899999999999999998864

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=85.98  E-value=0.49  Score=28.94  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=29.7

Q ss_pred             cccEEEECCCH-HHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAGI-AGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG~-~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -.+++|||-+. .|.-+|..|.++|..|+++....
T Consensus        37 GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          37 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            36899999876 99999999999999999998654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.97  E-value=0.31  Score=32.04  Aligned_cols=30  Identities=30%  Similarity=0.268  Sum_probs=22.9

Q ss_pred             EEEECC-CHHHHHHHHHHHhCCCCeEEEecc
Q 030042            8 VVIIGA-GIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         8 v~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      ++|.|| +-.|..+|..|+++|.+|++..+.
T Consensus         9 alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           9 ALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            444444 447889999999999999987654

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=85.74  E-value=0.44  Score=32.12  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=27.9

Q ss_pred             ccccEEEECCCHHHHHHHHHHHhC----C-------CCeEEEeccC
Q 030042            4 VEKDVVIIGAGIAGLATALALKRL----G-------VEPLVLEKSD   38 (184)
Q Consensus         4 ~~~dv~IiGgG~~Gl~~A~~l~~~----g-------~~v~vie~~~   38 (184)
                      ++..++|.|+|.+|..+|..+...    |       .++.++|+.-
T Consensus        24 ~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kG   69 (298)
T d1gq2a1          24 SDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKG   69 (298)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTE
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCC
Confidence            356899999999999999888632    3       2799999864

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=85.73  E-value=0.61  Score=29.18  Aligned_cols=34  Identities=21%  Similarity=0.217  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~   39 (184)
                      ..+.|||.|-.|...|..|...|.+|..+++...
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             cceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            5799999999999999999889999999997543

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=85.30  E-value=0.75  Score=29.97  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=28.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      ...|+|=|.|-.|..+|..|.+.|.+|+-+.-
T Consensus        31 g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          31 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEeec
Confidence            46899999999999999999999999876653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=85.30  E-value=1.3  Score=29.03  Aligned_cols=58  Identities=10%  Similarity=0.158  Sum_probs=40.3

Q ss_pred             HHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCc--ceEEEEe-----cCcEEEeeEEEecCCcc
Q 030042          107 KKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSS--PVFIHLV-----DGTIVKTKFLIGCDGIH  164 (184)
Q Consensus       107 ~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~--~~~v~~~-----~g~~~~a~~vI~a~G~~  164 (184)
                      ..+.+.+.+.+.+.+|+++++|+++....++...  ...+...     +++.+.+|.||.|++..
T Consensus       231 ~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~  295 (373)
T d1seza1         231 QTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLC  295 (373)
T ss_dssp             HHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHH
T ss_pred             hHHHHHHHHHhccceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchH
Confidence            5677888888878889999999999876531111  1233321     23578899999999743

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=85.07  E-value=1.1  Score=30.48  Aligned_cols=47  Identities=9%  Similarity=0.121  Sum_probs=33.3

Q ss_pred             CCeeeeCceEEEEeccCCCCCcceEEEE---ecCc--EEEeeEEEecCCcchH
Q 030042          119 NGTIHFSSKIAAIDSQTHDGSSPVFIHL---VDGT--IVKTKFLIGCDGIHST  166 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~---~~g~--~~~a~~vI~a~G~~s~  166 (184)
                      +.+++.++.|++|..++..... ..|+.   .+|+  .+.||.||+|.|+...
T Consensus       232 ~~~l~~~a~V~~i~~~~~~~r~-~gV~~~d~~~g~~~~i~a~~vilaaGa~~t  283 (379)
T d2f5va1         232 RFNLFPAVACERVVRNALNSEI-ESLHIHDLISGDRFEIKADVYVLTAGAVHN  283 (379)
T ss_dssp             EEEEECSEEEEEEEECTTSSCE-EEEEEEETTTCCEEEEEEEEEEECSCHHHH
T ss_pred             CCEEecCCEEEEEEEeCCCCEE-EEEEEEECCCCEEEEEeceEEEeccCccCC
Confidence            5788999999999876532232 34443   3454  6789999999998654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.02  E-value=0.62  Score=29.23  Aligned_cols=29  Identities=24%  Similarity=0.263  Sum_probs=24.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCCeEEE
Q 030042            6 KDVVIIGA-GIAGLATALALKRLGVEPLVL   34 (184)
Q Consensus         6 ~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vi   34 (184)
                      ..|+|.|| |..|..++.+|.++|..+.|+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~   32 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVI   32 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEE
Confidence            47999999 999999999999998743333

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=84.91  E-value=0.9  Score=24.50  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=26.3

Q ss_pred             cEEEECCCHHHH-HHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGIAGL-ATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~~Gl-~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++=+||-|-+|+ .+|..|.++|++|.--|...
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            567788888888 45889999999999999764

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.63  E-value=0.99  Score=32.69  Aligned_cols=55  Identities=13%  Similarity=0.080  Sum_probs=41.1

Q ss_pred             HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042          107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG  162 (184)
Q Consensus       107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G  162 (184)
                      .++-+.+.+.+.  |..+.+++.|.++..+.+++.. ..|...+|+++.++.||....
T Consensus       376 gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~-~~v~~~~g~~i~~k~vI~~ps  432 (491)
T d1vg0a1         376 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKC-KAVIDQFGQRIISKHFIIEDS  432 (491)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCE-EEEEETTSCEEECSEEEEEGG
T ss_pred             chHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeE-EEEEccCCcEEecCeEEECHH
Confidence            466666666554  8888999999999876532343 667788899999999988654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.61  E-value=0.4  Score=30.93  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=28.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKSDGL   40 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~~   40 (184)
                      +|+|.|| +-.|.++|..|+++|.+|+++++....
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            5888886 456889999999999999999987643

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.57  E-value=0.75  Score=27.58  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=21.9

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCC
Q 030042            6 KDVVIIGA-GIAGLATALALKRLGVE   30 (184)
Q Consensus         6 ~dv~IiGg-G~~Gl~~A~~l~~~g~~   30 (184)
                      |+|.|||+ |.+|.-+-..|.++.+.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp   27 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLP   27 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCC
Confidence            68999999 99999999999888643

>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.31  E-value=0.97  Score=26.92  Aligned_cols=32  Identities=16%  Similarity=0.314  Sum_probs=25.9

Q ss_pred             cccEEEECCCHHH---HHHHHHHHhCCCCeEEEec
Q 030042            5 EKDVVIIGAGIAG---LATALALKRLGVEPLVLEK   36 (184)
Q Consensus         5 ~~dv~IiGgG~~G---l~~A~~l~~~g~~v~vie~   36 (184)
                      +.|+.||++|.-=   +-+|-.|.+.|+++.|+.-
T Consensus        20 ~pdvtiiAsGsev~~AleAa~~L~~~GI~v~Vvs~   54 (146)
T d1gpua3          20 NPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSL   54 (146)
T ss_dssp             SCSEEEEECTHHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHHHhhccCccEEEe
Confidence            4699999999854   5556677788999999985

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=83.98  E-value=0.35  Score=29.65  Aligned_cols=32  Identities=19%  Similarity=0.145  Sum_probs=23.8

Q ss_pred             cEEEECCCH-HHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGAGI-AGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGgG~-~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .|+|.|||. .|+++...++..|.+|++.++++
T Consensus        31 ~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~   63 (179)
T d1qora2          31 QFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA   63 (179)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             EEEEEccccccchHHHHHHHHhCCeEeecccch
Confidence            578885555 77777666666799999998864

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=83.97  E-value=0.61  Score=30.44  Aligned_cols=31  Identities=32%  Similarity=0.407  Sum_probs=24.4

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCC-eEEEecc
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVE-PLVLEKS   37 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~-v~vie~~   37 (184)
                      -++|.|| |-.|..+|..|+++|.+ |+++-|.
T Consensus        11 t~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~   43 (259)
T d2fr1a1          11 TVLVTGGTGGVGGQIARWLARRGAPHLLLVSRS   43 (259)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4788884 66799999999999986 6666553

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.97  E-value=0.39  Score=31.56  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=24.2

Q ss_pred             cEEEECCCHHHHHH-----HHHHHhCCCCeEEEeccCC
Q 030042            7 DVVIIGAGIAGLAT-----ALALKRLGVEPLVLEKSDG   39 (184)
Q Consensus         7 dv~IiGgG~~Gl~~-----A~~l~~~g~~v~vie~~~~   39 (184)
                      -|+|.|=|-.|-++     |+.|++.|.+|++||-++.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            57788844445443     6677889999999998764

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.66  E-value=0.43  Score=30.35  Aligned_cols=19  Identities=11%  Similarity=0.137  Sum_probs=15.8

Q ss_pred             EEEecCcEEEeeEEEecCCc
Q 030042          144 IHLVDGTIVKTKFLIGCDGI  163 (184)
Q Consensus       144 v~~~~g~~~~a~~vI~a~G~  163 (184)
                      |.+++| ++.+|.||.|||.
T Consensus       217 V~~~dg-~~~~D~VV~ATGf  235 (235)
T d1w4xa2         217 VRTSER-EYELDSLVLATGF  235 (235)
T ss_dssp             EEESSC-EEECSEEEECCCC
T ss_pred             EEECCC-EEcCCEEEeCCCC
Confidence            556777 5899999999994

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.46  E-value=0.65  Score=30.67  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=25.4

Q ss_pred             ccEEEE--CCCHHHHHHHHHHHhC-CCCeEEEeccC
Q 030042            6 KDVVII--GAGIAGLATALALKRL-GVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~Ii--GgG~~Gl~~A~~l~~~-g~~v~vie~~~   38 (184)
                      ..|+||  |++-.|+.+|..|+++ |.+|++..|+.
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~   38 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV   38 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            368888  4555677888899875 88999999864

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.34  E-value=0.83  Score=29.84  Aligned_cols=33  Identities=36%  Similarity=0.335  Sum_probs=25.1

Q ss_pred             ccEEEE-CC-CHHHHHHHHHHHh---CCCCeEEEeccC
Q 030042            6 KDVVII-GA-GIAGLATALALKR---LGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~Ii-Gg-G~~Gl~~A~~l~~---~g~~v~vie~~~   38 (184)
                      -+|+|| || +-.|.++|..|++   +|.+|++.+|+.
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~   43 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH
Confidence            467777 44 2457888889987   689999999864

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.26  E-value=0.76  Score=28.05  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=21.5

Q ss_pred             ccEEEECCCHHHH--HHHHHHHhC-C---CCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGL--ATALALKRL-G---VEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl--~~A~~l~~~-g---~~v~vie~~~~   39 (184)
                      .+++|||||..|.  .++..+.+. .   -+++++|.+..
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~   41 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEG   41 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGG
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCcc
Confidence            4699999996654  333334332 2   37899997643

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.20  E-value=0.8  Score=28.08  Aligned_cols=34  Identities=15%  Similarity=0.152  Sum_probs=29.7

Q ss_pred             cccEEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            5 EKDVVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         5 ~~dv~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -.+++|||-+ ..|.-+|..|.++|..|++++...
T Consensus        39 Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          39 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            3589999985 599999999999999999998764

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.76  E-value=1.2  Score=29.90  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=27.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042            5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      ...|+|=|.|-.|..+|..|.+.|.+|+-+.-
T Consensus        36 gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          36 DKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            35799999999999999999999999776643

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.73  E-value=0.59  Score=30.98  Aligned_cols=31  Identities=19%  Similarity=0.392  Sum_probs=24.4

Q ss_pred             EEEECCC-HHHHHHHHHHHhCCCCeEEEeccC
Q 030042            8 VVIIGAG-IAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         8 v~IiGgG-~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++|-||+ -.|.++|..|+++|.+|++.+++.
T Consensus         7 alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           7 VIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4555543 368889999999999999999864

>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Escherichia coli [TaxId: 562]

Probab=82.34  E-value=0.8  Score=26.79  Aligned_cols=33  Identities=18%  Similarity=0.223  Sum_probs=26.5

Q ss_pred             cccEEEECCCHHHHH---HHHHHHhCCCCeEEEecc
Q 030042            5 EKDVVIIGAGIAGLA---TALALKRLGVEPLVLEKS   37 (184)
Q Consensus         5 ~~dv~IiGgG~~Gl~---~A~~l~~~g~~v~vie~~   37 (184)
                      ..|++||+.|..--.   +|-.|.+.|+++.|+.-.
T Consensus        22 ~~dv~iiasGs~v~~aleAa~~L~~~gI~~~Vi~~~   57 (136)
T d2r8oa3          22 QPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMP   57 (136)
T ss_dssp             SCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCCEEEEeeccchHHHHHHHHHHHhcCCCceEeech
Confidence            459999999987554   566777889999999864

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.98  E-value=0.92  Score=30.86  Aligned_cols=30  Identities=30%  Similarity=0.442  Sum_probs=25.4

Q ss_pred             EEEEC-CCHHHHHHHHHHHhCCCCeEEEecc
Q 030042            8 VVIIG-AGIAGLATALALKRLGVEPLVLEKS   37 (184)
Q Consensus         8 v~IiG-gG~~Gl~~A~~l~~~g~~v~vie~~   37 (184)
                      |+|.| +|..|..++..|.+.|.+|+++|+.
T Consensus         4 ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~   34 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIENGYDCVVADNL   34 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCeEEEEECC
Confidence            55665 5799999999999999999999853

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=81.93  E-value=1.8  Score=25.45  Aligned_cols=46  Identities=9%  Similarity=-0.013  Sum_probs=31.7

Q ss_pred             HHHHHHHhhCC--CCeeeeCc--eEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042          108 KLLQTLADELP--NGTIHFSS--KIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG  159 (184)
Q Consensus       108 ~l~~~l~~~~~--~~~i~~~~--~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~  159 (184)
                      .+.+.+.+.+.  +++++.+.  +++++....      ..+.+.+|+++.+|++++
T Consensus        89 ~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~------~~~~~~~Ge~v~yD~l~v  138 (141)
T d1fcda2          89 GWERLYGFGTENAMIEWHPGPDSAVVKVDGGE------MMVETAFGDEFKADVINL  138 (141)
T ss_dssp             HHHHHHCSTTSSCSEEEECSSTTCEEEEEETT------TEEEETTCCEEECSEEEE
T ss_pred             HHHHHHHHHHHhcCceeeecCCceEEeecCCc------EEEEeCCCcEEeeeEEEe
Confidence            34455555544  67777654  566766654      667888999999999875

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=81.92  E-value=1.2  Score=26.88  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=23.4

Q ss_pred             CCCccccEEEECCCHHHHHH-HHHHHhC-CCCe-EEEeccC
Q 030042            1 MAMVEKDVVIIGAGIAGLAT-ALALKRL-GVEP-LVLEKSD   38 (184)
Q Consensus         1 m~~~~~dv~IiGgG~~Gl~~-A~~l~~~-g~~v-~vie~~~   38 (184)
                      |+ ++.++.|||+|-.|--+ ...|.+. ..++ .|.+++.
T Consensus         1 M~-kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~   40 (157)
T d1nvmb1           1 MN-QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDA   40 (157)
T ss_dssp             CC-SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCT
T ss_pred             CC-CCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecch
Confidence            77 46899999999888754 3344433 3344 4446544

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.89  E-value=0.82  Score=31.12  Aligned_cols=29  Identities=24%  Similarity=0.168  Sum_probs=23.3

Q ss_pred             EEEECCC---HHHHHHHHHHHhCCCCeEEEec
Q 030042            8 VVIIGAG---IAGLATALALKRLGVEPLVLEK   36 (184)
Q Consensus         8 v~IiGgG---~~Gl~~A~~l~~~g~~v~vie~   36 (184)
                      ++|-|+|   -.|.++|..|+++|.+|++..+
T Consensus         5 AlITGaa~s~GIG~aiA~~la~~GA~V~i~~~   36 (329)
T d1uh5a_           5 CFIAGIGDTNGYGWGIAKELSKRNVKIIFGIW   36 (329)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEeCCCCCChHHHHHHHHHHHcCCEEEEEeC
Confidence            4566644   4799999999999999998754

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=81.77  E-value=0.29  Score=33.34  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=22.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~   39 (184)
                      .+|+|||+|..+++... |+.. ..+|+++|-++.
T Consensus        79 k~VLiiG~G~G~~~~~l-l~~~~~~~v~~VEiD~~  112 (312)
T d1uira_          79 KRVLIVGGGEGATLREV-LKHPTVEKAVMVDIDGE  112 (312)
T ss_dssp             CEEEEEECTTSHHHHHH-TTSTTCCEEEEEESCHH
T ss_pred             ceEEEeCCCchHHHHHH-HhcCCcceEEEecCCHH
Confidence            48999999985544432 3333 348999998754

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=81.57  E-value=0.71  Score=29.99  Aligned_cols=31  Identities=26%  Similarity=0.255  Sum_probs=24.5

Q ss_pred             EEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            8 VVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         8 v~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++|-|| +-.|.++|..|+++|.+|++.+++.
T Consensus         7 alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           7 ALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             EEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            444464 3468899999999999999999865

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=81.06  E-value=0.72  Score=32.23  Aligned_cols=46  Identities=15%  Similarity=0.052  Sum_probs=30.1

Q ss_pred             CCeeeeCceEEEEeccCCC-C-Cc-ceEEEEecCc--EEEeeE-EEecCCcc
Q 030042          119 NGTIHFSSKIAAIDSQTHD-G-SS-PVFIHLVDGT--IVKTKF-LIGCDGIH  164 (184)
Q Consensus       119 ~~~i~~~~~v~~~~~~~~~-~-~~-~~~v~~~~g~--~~~a~~-vI~a~G~~  164 (184)
                      +.+++.++.|++|..++.. + .. .+.+...++.  ++.|+. ||+|.|+-
T Consensus       245 nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai  296 (391)
T d1gpea1         245 NLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSA  296 (391)
T ss_dssp             TEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTT
T ss_pred             hhhhhccceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchh
Confidence            7899999999998543210 1 11 1334445564  577876 99999974

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.96  E-value=0.35  Score=32.30  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=22.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLG-VEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~   39 (184)
                      .+|+|||+|-.+.+..  +.++. .+|.++|-++.
T Consensus        74 ~~vLiiG~G~G~~~~~--~l~~~~~~v~~VEiD~~  106 (276)
T d1mjfa_          74 KRVLVIGGGDGGTVRE--VLQHDVDEVIMVEIDED  106 (276)
T ss_dssp             CEEEEEECTTSHHHHH--HTTSCCSEEEEEESCHH
T ss_pred             ceEEEecCCchHHHHH--HHHhCCceEEEecCCHH
Confidence            5899999998655433  33444 37899997653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.93  E-value=0.75  Score=30.39  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=25.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -++|.|| +-.|.++|..|+++|.+|++.+++.
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           7 TVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3555565 3468899999999999999999864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=80.76  E-value=0.77  Score=29.95  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=24.1

Q ss_pred             EEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            8 VVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         8 v~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      ++|-|| +-.|.++|..|+++|.+|++.+++.
T Consensus         9 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           9 AIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            444453 3468899999999999999999864

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=80.68  E-value=0.8  Score=30.58  Aligned_cols=33  Identities=36%  Similarity=0.490  Sum_probs=28.1

Q ss_pred             ccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            6 KDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         6 ~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .+|+|.|| |..|..++..|.++|..+++++...
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~   36 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD   36 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch
Confidence            37899986 8999999999999999888886554

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=80.51  E-value=0.43  Score=31.79  Aligned_cols=33  Identities=18%  Similarity=0.358  Sum_probs=22.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCC
Q 030042            6 KDVVIIGAGIAGLATALALKRLG-VEPLVLEKSDG   39 (184)
Q Consensus         6 ~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~   39 (184)
                      .+|+|||+|-.+.+. ..++..+ .+|+++|-++.
T Consensus        77 ~~vLiiGgG~G~~~~-~~l~~~~~~~i~~VEID~~  110 (274)
T d1iy9a_          77 EHVLVVGGGDGGVIR-EILKHPSVKKATLVDIDGK  110 (274)
T ss_dssp             CEEEEESCTTCHHHH-HHTTCTTCSEEEEEESCHH
T ss_pred             ceEEecCCCCcHHHH-HHHhcCCcceEEEecCCHH
Confidence            589999999855443 3344334 47999997653

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=80.48  E-value=0.34  Score=28.91  Aligned_cols=30  Identities=20%  Similarity=0.063  Sum_probs=20.8

Q ss_pred             EEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            9 VIIGAGIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         9 ~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      -+||.|-.|..+|..|++.+..+.|+.|..
T Consensus         3 gfIG~G~mg~~l~~~L~~~~~~~~v~~R~~   32 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKDRYEIGYILSRSI   32 (153)
T ss_dssp             EEESCCHHHHHHHHTTC----CCCEECSSH
T ss_pred             EEEeCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            489999999999998866544456777653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.47  E-value=1.2  Score=30.04  Aligned_cols=32  Identities=28%  Similarity=0.267  Sum_probs=27.5

Q ss_pred             cE-EEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042            7 DV-VIIGA-GIAGLATALALKRLGVEPLVLEKSD   38 (184)
Q Consensus         7 dv-~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~   38 (184)
                      .| +|.|| |..|..++..|.+.|++|+.+++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            46 67775 6899999999999999999999854