Citrus Sinensis ID: 030061

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MGETLISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPPF
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHccEEEEEEEEccccccEEEEEcccccEEEEEEEEEcccccccccEEEEEEEcccccEEEEEEcccEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEEccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccEHHHHcccEEEEEEEEEEcccccccccEEEEEEEcccccEEEccccccccEEEEEEcccccEEEEEEEccccccccEEEEEEEEccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MGETLISLDRATVLPLILLLCLACYICVVPVTEAiwlqipssgtkcvseeiNSNVVVLADYyvideahpehpptvsakvtspygnnlhhnenvthgqfafttteagNYMACFwlgsnpqkvadatlgldwrigfsakdwesvakkdkieGVELHLKRLEAQVQSIHENLLFLkhrsslflppf
Flexible Loop (DISEMBL)
mgetlisldrATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLlflkhrsslflppf
Low Complexity Region (SEG)
MGETLISLDRATvlplilllclacyicvvPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPPF
Disordered region (IsUnstruct)
****LISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEA***************YGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRS*******
Disordered Region (DISOPRED)
*************LPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSA**************VELHLKRLEAQVQSIHENLLFLKHRSSLFLPP*
Disordered Region (DISEMBL)
MGETLISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPPF
Disordered Region (DISPRO)
*GETLISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPPF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGETLISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKxxxxxxxxxxxxxxxxxxxxxxxxxxxxSSLFLPPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q8RWM6	216	Transmembrane emp24 domai	yes	no	0.874	0.740	0.652	4e-57
Q6IDL4	217	Transmembrane emp24 domai	no	no	0.863	0.728	0.591	5e-53
Q9FVU0	212	Transmembrane emp24 domai	no	no	0.907	0.783	0.523	3e-48
F4J4Y0	217	Transmembrane emp24 domai	no	no	0.885	0.746	0.466	8e-38
Q9LQY3	214	Transmembrane emp24 domai	no	no	0.885	0.757	0.402	7e-30
Q8VY92	214	Transmembrane emp24 domai	no	no	0.836	0.714	0.395	4e-25
Q8GYG1	212	Transmembrane emp24 domai	no	no	0.841	0.726	0.368	1e-24
O81045	213	Transmembrane emp24 domai	no	no	0.786	0.676	0.350	5e-22
Q9LJV9	225	Transmembrane emp24 domai	no	no	0.775	0.631	0.335	1e-20
Q5E971	219	Transmembrane emp24 domai	yes	no	0.770	0.643	0.309	5e-16

>sp|Q8RWM6|P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana GN=At1g21900 PE=1 SV=1

 Score =  220 bits (561), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/161 (65%), Positives = 126/161 (78%), Gaps = 1/161 (0%)

Query: 18  LLLCLACYICVVPVTEAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVS 76
           L L +  +   V   EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS
Sbjct: 11  LFLTVVLFFLTVNYGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVS 70

Query: 77  AKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSA 136
           +KVTSPYGNNLHH ENVTHGQFAFTT EAGNY+ACFW+ S+       TLG+DW++G +A
Sbjct: 71  SKVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAA 130

Query: 137 KDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           KDW+SVAKK+KIEGVEL L+RLE  V SI ENL ++K R +
Sbjct: 131 KDWDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREA 171

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24beta2 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus. Once in the Golgi, interacts very efficiently with the COPI machinery for retrograde transport back to the endoplasmic reticulum.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1

 Score =  206 bits (525), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 94/159 (59%), Positives = 121/159 (76%), Gaps = 1/159 (0%)

Query: 19  LLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAK 78
            L L     ++PV EA+WL +P +GTKCVSEEI SNVVVLADY +I E H E  PT+S K
Sbjct: 15  FLLLFLVPVMIPVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDH-EVMPTISVK 73

Query: 79  VTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKD 138
           VTSPYGNNLH+ ENVTHGQFAFTT E+GNY+ACFW         + ++ +DWR G +AKD
Sbjct: 74  VTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAKD 133

Query: 139 WESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           W S+AKK+KIEGVEL +++LE  V++IHEN+L+L++R +
Sbjct: 134 WASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREA 172

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVU0|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana GN=At1g57620 PE=1 SV=1

 Score =  190 bits (483), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 121/168 (72%), Gaps = 2/168 (1%)

Query: 10  RATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHP 69
           +  ++P  +LL  A    + P+ EA+WL +P +G+KCVSEEI SNV+VLADY VI E H 
Sbjct: 2   KKKMIPTTILLS-ALIFSLSPICEAVWLTVPHTGSKCVSEEIQSNVIVLADYLVISEEHS 60

Query: 70  EHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLD 129
             P TVS KVT+PYG  LHH EN T+GQFAFTT E+G Y+ACF   +      D ++ +D
Sbjct: 61  IFP-TVSVKVTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINID 119

Query: 130 WRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           W+ G +AKDW+S+A+K+KIEGVEL  K+LE  V++IHENL++L++R +
Sbjct: 120 WKTGIAAKDWDSIARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREA 167

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|F4J4Y0|P24D6_ARATH Transmembrane emp24 domain-containing protein p24delta6 OS=Arabidopsis thaliana GN=At3g10780 PE=1 SV=1

 Score =  156 bits (394), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 107/165 (64%), Gaps = 3/165 (1%)

Query: 16  LILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTV 75
            I L+ LA    + P  EAIWL +P SG +CV EEI +NVVV+ DY  ID+A  +  PT+
Sbjct: 8   FIGLIYLAGGGSLFPGVEAIWLTVPESGERCVYEEIQANVVVVLDYICIDDAFTQLGPTL 67

Query: 76  SAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWL---GSNPQKVADATLGLDWRI 132
             +VTSPYG  L+   NVTHGQ AFTT+E+G ++AC  +    S+    +   + LDW++
Sbjct: 68  DVRVTSPYGKELYKIANVTHGQAAFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWKM 127

Query: 133 GFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           G  AKDW+SVAKK+KIEGVEL ++R      +I  N+L+L+ R +
Sbjct: 128 GIRAKDWDSVAKKEKIEGVELEIRRSTEYASAIRANILYLRIREA 172

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana GN=At1g26690 PE=2 SV=1

 Score =  130 bits (326), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 104/174 (59%), Gaps = 12/174 (6%)

Query: 5   LISLDRATVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVI 64
           L SL+  T+L   L L ++       V++++  ++ S  TKC+SE+I SN + +  Y V+
Sbjct: 3   LRSLNLCTIL---LFLAISS-----QVSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVV 54

Query: 65  D--EAHPE-HPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKV 121
           +  EAHP      +S +VTS YGN  HH E+V  GQFAFT  E+G+YMAC+    +  +V
Sbjct: 55  NPNEAHPSPQSHKISIRVTSSYGNTYHHAEDVESGQFAFTAVESGDYMACYTAVDHKPEV 114

Query: 122 ADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHR 175
              ++  DWR G  +K W SVAKK ++E +E  +KRL   V SIHE + +L+ R
Sbjct: 115 T-LSIDFDWRTGVQSKSWSSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLRER 167

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY92|P24DA_ARATH Transmembrane emp24 domain-containing protein p24delta10 OS=Arabidopsis thaliana GN=At1g69460 PE=1 SV=1

 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 9/162 (5%)

Query: 18  LLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH--PPT- 74
           +LL LA +    P++ ++   + S  TKC++E+I SN + +  Y  ID  H     P T 
Sbjct: 11  MLLILAIW---SPISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYN-IDNPHEGQALPQTH 66

Query: 75  -VSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIG 133
            +S KVTS  GNN HH E V  GQFAF+  EAG+YMACF    +  +V+  ++  +W+ G
Sbjct: 67  KISVKVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVS-LSIDFEWKTG 125

Query: 134 FSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHR 175
             +K W +VAKK ++E +E  +K L   V SIHE + +L+ R
Sbjct: 126 VQSKSWANVAKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDR 167

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYG1|P24D7_ARATH Transmembrane emp24 domain-containing protein p24delta7 OS=Arabidopsis thaliana GN=At1g14010 PE=2 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 96/163 (58%), Gaps = 9/163 (5%)

Query: 17  ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PT- 74
           I+LL L+    + PVT +I  ++ S  TKC+SEEI++N + +  Y +I+  H +HP P+ 
Sbjct: 8   IVLLILSI---LSPVTLSIRYELLSGHTKCISEEIHANAMTIGKYSIIN-PHEDHPLPSS 63

Query: 75  --VSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRI 132
             V+ +VTSP G   H ++ V  GQF+F   E G+Y++CF    + +      +  DWR 
Sbjct: 64  HKVTVRVTSPQGTAYHESDGVESGQFSFVAVETGDYISCF-SAVDHKPETTLIIDFDWRT 122

Query: 133 GFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHR 175
           G   KDW +VAKK ++E +E  +K+L   V  IH+ + +L+ R
Sbjct: 123 GIHTKDWSNVAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDR 165

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|O81045|P24D8_ARATH Transmembrane emp24 domain-containing protein p24delta8 OS=Arabidopsis thaliana GN=At2g03290 PE=1 SV=1

 Score =  103 bits (258), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 7/151 (4%)

Query: 30  PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP----PTVSAKVTSPYGN 85
           P T ++  ++ SS TKC+ EEI+ N + +  Y++++     HP      +  KV  P G 
Sbjct: 18  PRTLSMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGK 77

Query: 86  NLHHNENVTHGQFAFTTTEAGNYMACFW-LGSNPQKVADATLGLDWRIGFSAKDWESVAK 144
           NLH  + V  GQF+FT  E G+Y+AC   +   P+     T+  DW+ G  +K+W +VAK
Sbjct: 78  NLHEADKVEAGQFSFTAYENGSYVACITAIDYKPE--TTLTIDFDWKTGVHSKEWTNVAK 135

Query: 145 KDKIEGVELHLKRLEAQVQSIHENLLFLKHR 175
           K +++ +E  +K L   V SIHE + +L+ R
Sbjct: 136 KSQVDMMEYQVKTLMDTVISIHEEMYYLRER 166

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJV9|P24DB_ARATH Transmembrane emp24 domain-containing protein p24delta11 OS=Arabidopsis thaliana GN=At3g29070 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 4/146 (2%)

Query: 33  EAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH-PPT--VSAKVTSPYGNNLHH 89
           E++ L + S  TKC+S++I +N + +  Y +++     H PP+  +   V+SP G + HH
Sbjct: 34  ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query: 90  NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
            ENV  G+F FT  E G+YM CF +    +  A   +  +W+ G  AKDW ++AK+ +I 
Sbjct: 94  AENVESGKFVFTAEETGDYMTCF-VAPGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQIT 152

Query: 150 GVELHLKRLEAQVQSIHENLLFLKHR 175
            +E+ +++L    ++IHE +  L  R
Sbjct: 153 MLEVEVRKLLDVTETIHEEMFQLIER 178

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5E971|TMEDA_BOVIN Transmembrane emp24 domain-containing protein 10 OS=Bos taurus GN=TMED10 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 78/142 (54%), Gaps = 1/142 (0%)

Query: 34  AIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV 93
           AI   +P +  KC+ EEI+ +++V   Y + D++          K+T   G+ L+  E+ 
Sbjct: 31  AISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTHLKITDSAGHILYSKEDA 90

Query: 94  THGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVEL 153
           T G+FAFTT +   +  CF       ++ D  + LD + G  AK++E +AK +K++ +E+
Sbjct: 91  TKGKFAFTTEDYDMFEVCFE-SKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEV 149

Query: 154 HLKRLEAQVQSIHENLLFLKHR 175
            L+RLE   +SI  +  ++K R
Sbjct: 150 ELRRLEDLSESIVNDFAYMKKR 171

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED2 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport involved in the biogenesis of COPI vesicles and vesicle coat recruitment. On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation. Increases coatomer-dependent GTPase-activating activity of ARFGAP2. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2LR1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Involved in trafficking of amyloid beta A4 protein and soluble APP-beta release (independent of modulation of gamma-secretase activity). As part of the presenilin-dependent gamma-secretase complex regulates gamma-cleavages of the amyloid beta A4 protein to yield amyloid-beta 40 (Abeta40). Involved in organization of the Golgi apparatus.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
255545458	219	Transmembrane emp24 domain-containing pr	0.907	0.757	0.656	4e-62
118484307	222	unknown [Populus trichocarpa]	0.918	0.756	0.639	7e-59
224066849	221	predicted protein [Populus trichocarpa]	0.918	0.760	0.639	8e-59
147856607	207	hypothetical protein VITISV_039788 [Viti	0.814	0.719	0.671	6e-56
225448026	216	PREDICTED: transmembrane emp24 domain-co	0.814	0.689	0.671	8e-56
15219136	216	emp24/gp25L/p24 family/GOLD domain-conta	0.874	0.740	0.652	2e-55
357461567	217	Transmembrane emp24 domain-containing pr	0.863	0.728	0.635	1e-54
298204564	192	unnamed protein product [Vitis vinifera]	0.803	0.765	0.673	1e-54
297850614	216	emp24/gp25L/p24 family protein [Arabidop	0.868	0.736	0.643	3e-54
217071424	217	unknown [Medicago truncatula]	0.863	0.728	0.635	1e-53

>gi|255545458|ref|XP_002513789.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis] gi|223546875|gb|EEF48372.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 109/166 (65%), Positives = 134/166 (80%)

Query: 12  TVLPLILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH 71
           +++ ++ L  L     V+PV EAIW  IPSSGTKCVSEEI +NVVVLADYY+I+E  P+H
Sbjct: 9   SLVAVLSLFVLCSSFDVIPVAEAIWFTIPSSGTKCVSEEIQNNVVVLADYYIINEDQPQH 68

Query: 72  PPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWR 131
            PT+S KVTSPYGNNLHHNENVTHGQFAFTT+EAGNY+ACFWL ++ Q+    T+ LDWR
Sbjct: 69  APTISVKVTSPYGNNLHHNENVTHGQFAFTTSEAGNYLACFWLDNHQQQAGTTTMSLDWR 128

Query: 132 IGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           IG +AKDW+SVA+K+KIEGVEL L RLE  VQ+IH NL++LK R +
Sbjct: 129 IGIAAKDWDSVARKEKIEGVELDLTRLEGAVQAIHTNLIYLKEREA 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484307|gb|ABK94032.1| unknown [Populus trichocarpa]

 Score =  231 bits (590), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 134/169 (79%), Gaps = 1/169 (0%)

Query: 10  RATVLPL-ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAH 68
           RA V  L ++LLCL     +VPV EAIWL IP+SGTKCVSEEI ++VVVLADYYV++E H
Sbjct: 9   RAGVTALSLILLCLTISNNIVPVAEAIWLSIPNSGTKCVSEEIQNDVVVLADYYVLNEEH 68

Query: 69  PEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGL 128
           PEHP TV+ +VTSPYGNNLHHNEN THGQFAFTT+E GNY+ACF L  + +     TL L
Sbjct: 69  PEHPVTVTVRVTSPYGNNLHHNENATHGQFAFTTSEGGNYLACFTLDGHQEPATGVTLSL 128

Query: 129 DWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           DW+IG +AKDW+SVAKK+KIEGVEL +++L+   ++IH NLL+LK R +
Sbjct: 129 DWKIGIAAKDWDSVAKKEKIEGVELEVRKLKDHAEAIHNNLLYLKQREA 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066849|ref|XP_002302245.1| predicted protein [Populus trichocarpa] gi|222843971|gb|EEE81518.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 134/169 (79%), Gaps = 1/169 (0%)

Query: 10  RATVLPL-ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAH 68
           RA V  L ++LLCL     +VPV EAIWL IP+SGTKCVSEEI ++VVVLADYYV++E H
Sbjct: 8   RAGVTALSLILLCLTISNNIVPVAEAIWLSIPNSGTKCVSEEIQNDVVVLADYYVLNEEH 67

Query: 69  PEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGL 128
           PEHP TV+ +VTSPYGNNLHHNEN THGQFAFTT+E GNY+ACF L  + +     TL L
Sbjct: 68  PEHPVTVTVRVTSPYGNNLHHNENATHGQFAFTTSEGGNYLACFTLDGHQEPATGVTLSL 127

Query: 129 DWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           DW+IG +AKDW+SVAKK+KIEGVEL +++L+   ++IH NLL+LK R +
Sbjct: 128 DWKIGIAAKDWDSVAKKEKIEGVELEVRKLKDHAEAIHNNLLYLKQREA 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856607|emb|CAN82472.1| hypothetical protein VITISV_039788 [Vitis vinifera]

 Score =  222 bits (565), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 122/149 (81%)

Query: 29  VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLH 88
           +P+++AIWL IPSSGTKCVSEEI +NVVVLADY VI + H    PT+S KVTSPYGNNLH
Sbjct: 14  IPMSQAIWLSIPSSGTKCVSEEIQNNVVVLADYLVIPDDHTHSSPTISIKVTSPYGNNLH 73

Query: 89  HNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKI 148
           H ENVTHGQFAFTT+EAGNY+ACFW+  + Q   D ++ LDW+ G  AKDWESVA+K+KI
Sbjct: 74  HKENVTHGQFAFTTSEAGNYLACFWVNGHNQGGGDVSVNLDWKTGIGAKDWESVARKEKI 133

Query: 149 EGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           EGVEL L++LE  V++IHENLL+LK R +
Sbjct: 134 EGVELELRKLEGAVEAIHENLLYLKSREA 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448026|ref|XP_002272994.1| PREDICTED: transmembrane emp24 domain-containing protein 10-like [Vitis vinifera]

 Score =  221 bits (564), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 100/149 (67%), Positives = 122/149 (81%)

Query: 29  VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLH 88
           +P+++AIWL IPSSGTKCVSEEI +NVVVLADY VI + H    PT+S KVTSPYGNNLH
Sbjct: 23  IPMSQAIWLSIPSSGTKCVSEEIQNNVVVLADYLVIPDDHTHSSPTISIKVTSPYGNNLH 82

Query: 89  HNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKI 148
           H ENVTHGQFAFTT+EAGNY+ACFW+  + Q   D ++ LDW+ G  AKDWESVA+K+KI
Sbjct: 83  HKENVTHGQFAFTTSEAGNYLACFWVDGHNQGGGDVSVNLDWKTGIGAKDWESVARKEKI 142

Query: 149 EGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           EGVEL L++LE  V++IHENLL+LK R +
Sbjct: 143 EGVELELRKLEGAVEAIHENLLYLKSREA 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219136|ref|NP_173608.1| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana] gi|75247611|sp|Q8RWM6.1|P24D5_ARATH RecName: Full=Transmembrane emp24 domain-containing protein p24delta5; AltName: Full=Atp24; AltName: Full=p24 family protein delta1c; Short=p24delta1c; AltName: Full=p24 family protein delta5; Short=p24delta5; Flags: Precursor gi|20260194|gb|AAM12995.1| similar to transmembrane protein [Arabidopsis thaliana] gi|21387055|gb|AAM47931.1| transmembrane protein-like protein [Arabidopsis thaliana] gi|332192049|gb|AEE30170.1| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/161 (65%), Positives = 126/161 (78%), Gaps = 1/161 (0%)

Query: 18  LLLCLACYICVVPVTEAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVS 76
           L L +  +   V   EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS
Sbjct: 11  LFLTVVLFFLTVNYGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVS 70

Query: 77  AKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSA 136
           +KVTSPYGNNLHH ENVTHGQFAFTT EAGNY+ACFW+ S+       TLG+DW++G +A
Sbjct: 71  SKVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAA 130

Query: 137 KDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           KDW+SVAKK+KIEGVEL L+RLE  V SI ENL ++K R +
Sbjct: 131 KDWDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREA 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461567|ref|XP_003601065.1| Transmembrane emp24 domain-containing protein [Medicago truncatula] gi|217075442|gb|ACJ86081.1| unknown [Medicago truncatula] gi|355490113|gb|AES71316.1| Transmembrane emp24 domain-containing protein [Medicago truncatula]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/162 (63%), Positives = 133/162 (82%), Gaps = 4/162 (2%)

Query: 17  ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PTV 75
           ILLLC    I + P T AIWL IPSSGTKCVS++I ++VVVLA+YYV+ +    HP PT+
Sbjct: 14  ILLLCFTSLINI-PQTNAIWLSIPSSGTKCVSQDIQTHVVVLANYYVVADNIQGHPLPTI 72

Query: 76  SAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFS 135
           SAKVTSPYGNNLH+NENVT GQFAFTTTE+G+Y+ACFW+  N + +A +++ L+W+ G S
Sbjct: 73  SAKVTSPYGNNLHNNENVTQGQFAFTTTESGSYVACFWM--NSKNLAGSSISLEWKTGIS 130

Query: 136 AKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           AKDW+SVAKK+KIEGVEL L++L+  VQ+IHENLL+LK+R +
Sbjct: 131 AKDWDSVAKKEKIEGVELELRKLDGAVQAIHENLLYLKNREA 172

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204564|emb|CBI23839.3| unnamed protein product [Vitis vinifera]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 120/147 (81%)

Query: 31  VTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN 90
           +++AIWL IPSSGTKCVSEEI +NVVVLADY VI + H    PT+S KVTSPYGNNLHH 
Sbjct: 1   MSQAIWLSIPSSGTKCVSEEIQNNVVVLADYLVIPDDHTHSSPTISIKVTSPYGNNLHHK 60

Query: 91  ENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEG 150
           ENVTHGQFAFTT+EAGNY+ACFW+  + Q   D ++ LDW+ G  AKDWESVA+K+KIEG
Sbjct: 61  ENVTHGQFAFTTSEAGNYLACFWVDGHNQGGGDVSVNLDWKTGIGAKDWESVARKEKIEG 120

Query: 151 VELHLKRLEAQVQSIHENLLFLKHRSS 177
           VEL L++LE  V++IHENLL+LK R +
Sbjct: 121 VELELRKLEGAVEAIHENLLYLKSREA 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850614|ref|XP_002893188.1| emp24/gp25L/p24 family protein [Arabidopsis lyrata subsp. lyrata] gi|297339030|gb|EFH69447.1| emp24/gp25L/p24 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 103/160 (64%), Positives = 126/160 (78%), Gaps = 1/160 (0%)

Query: 19  LLCLACYICVVPVTEAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSA 77
           +L +  ++  V   EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS+
Sbjct: 12  VLAVVLFLLTVNYGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVSS 71

Query: 78  KVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAK 137
           KVTSPYGNNLHH ENVTHGQFAFTT EAGNY+ACF + S        TLG+DW++G +AK
Sbjct: 72  KVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFSIDSTHPLANPITLGVDWKMGIAAK 131

Query: 138 DWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           DW+SVAKK+KIEGVEL L+RLE  VQSI EN+ ++K R +
Sbjct: 132 DWDSVAKKEKIEGVELQLRRLEGLVQSIRENINYIKDREA 171

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071424|gb|ACJ84072.1| unknown [Medicago truncatula]

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/162 (63%), Positives = 132/162 (81%), Gaps = 4/162 (2%)

Query: 17  ILLLCLACYICVVPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PTV 75
           ILLLC    I + P T AIWL IPSSGTK VS++I ++VVVLA+YYV+ +    HP PT+
Sbjct: 14  ILLLCFTSLINI-PQTNAIWLSIPSSGTKRVSQDIQTHVVVLANYYVVADNIQGHPLPTI 72

Query: 76  SAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFS 135
           SAKVTSPYGNNLH+NENVT GQFAFTTTE+G+Y+ACFW+  N + +A +++ L+W+ G S
Sbjct: 73  SAKVTSPYGNNLHNNENVTQGQFAFTTTESGSYVACFWM--NSKNLAGSSISLEWKTGIS 130

Query: 136 AKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSS 177
           AKDW+SVAKK+KIEGVEL LK+L+  VQ+IHENLL+LK+R +
Sbjct: 131 AKDWDSVAKKEKIEGVELELKKLDGAVQAIHENLLYLKNREA 172

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2201098	216	p24delta5 "p24 subfamily delta	0.792	0.671	0.698	6.3e-53
TAIR|locus:2012335	217	AT1G09580 [Arabidopsis thalian	0.803	0.677	0.621	1.2e-49
TAIR|locus:2206520	212	AT1G57620 [Arabidopsis thalian	0.803	0.693	0.567	9.1e-45
TAIR|locus:2200630	214	AT1G26690 [Arabidopsis thalian	0.781	0.668	0.429	5.6e-29
TAIR|locus:2007196	214	AT1G69460 [Arabidopsis thalian	0.786	0.672	0.4	1.8e-25
TAIR|locus:2014864	212	AT1G14010 [Arabidopsis thalian	0.786	0.679	0.373	4.6e-25
TAIR|locus:2056730	166	AT2G03040 [Arabidopsis thalian	0.786	0.867	0.364	2.3e-23
TAIR|locus:2056976	213	AT2G03290 [Arabidopsis thalian	0.786	0.676	0.357	1e-22
TAIR|locus:2092788	225	AT3G29070 [Arabidopsis thalian	0.775	0.631	0.335	3e-21
UNIPROTKB|F1S2Q3	219	TMED10 "Uncharacterized protei	0.765	0.639	0.312	1.1e-16

TAIR|locus:2201098 p24delta5 "p24 subfamily delta 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 102/146 (69%), Positives = 121/146 (82%)

Query:    33 EAIWLQIPSSG-TKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE 91
             EAIWL IP++G TKCVSEEI SNVVVLADYYV+DE +PE+ P VS+KVTSPYGNNLHH E
Sbjct:    26 EAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVSSKVTSPYGNNLHHQE 85

Query:    92 NVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGV 151
             NVTHGQFAFTT EAGNY+ACFW+ S+       TLG+DW++G +AKDW+SVAKK+KIEGV
Sbjct:    86 NVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAAKDWDSVAKKEKIEGV 145

Query:   152 ELHLKRLEAQVQSIHENLLFLKHRSS 177
             EL L+RLE  V SI ENL ++K R +
Sbjct:   146 ELQLRRLEGLVLSIRENLNYIKDREA 171

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2012335 AT1G09580 [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 92/148 (62%), Positives = 117/148 (79%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH 89
             PV EA+WL +P +GTKCVSEEI SNVVVLADY +I E H E  PT+S KVTSPYGNNLH+
Sbjct:    26 PVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDH-EVMPTISVKVTSPYGNNLHN 84

Query:    90 NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
              ENVTHGQFAFTT E+GNY+ACFW         + ++ +DWR G +AKDW S+AKK+KIE
Sbjct:    85 MENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAKDWASIAKKEKIE 144

Query:   150 GVELHLKRLEAQVQSIHENLLFLKHRSS 177
             GVEL +++LE  V++IHEN+L+L++R +
Sbjct:   145 GVELEIRKLEGAVEAIHENILYLRNREA 172

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2206520 AT1G57620 [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 84/148 (56%), Positives = 112/148 (75%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH 89
             P+ EA+WL +P +G+KCVSEEI SNV+VLADY VI E H   P TVS KVT+PYG  LHH
Sbjct:    21 PICEAVWLTVPHTGSKCVSEEIQSNVIVLADYLVISEEHSIFP-TVSVKVTAPYGTVLHH 79

Query:    90 NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
              EN T+GQFAFTT E+G Y+ACF   +      D ++ +DW+ G +AKDW+S+A+K+KIE
Sbjct:    80 RENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGIAAKDWDSIARKEKIE 139

Query:   150 GVELHLKRLEAQVQSIHENLLFLKHRSS 177
             GVEL  K+LE  V++IHENL++L++R +
Sbjct:   140 GVELEFKKLEGAVEAIHENLIYLRNREA 167

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2200630 AT1G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 64/149 (42%), Positives = 95/149 (63%)

Query:    31 VTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVID--EAHPEHPPT--VSAKVTSPYGNN 86
             V++++  ++ S  TKC+SE+I SN + +  Y V++  EAHP  P +  +S +VTS YGN 
Sbjct:    21 VSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAHPS-PQSHKISIRVTSSYGNT 79

Query:    87 LHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKD 146
              HH E+V  GQFAFT  E+G+YMAC+    +  +V   ++  DWR G  +K W SVAKK 
Sbjct:    80 YHHAEDVESGQFAFTAVESGDYMACYTAVDHKPEVT-LSIDFDWRTGVQSKSWSSVAKKS 138

Query:   147 KIEGVELHLKRLEAQVQSIHENLLFLKHR 175
             ++E +E  +KRL   V SIHE + +L+ R
Sbjct:   139 QVEVMEFDVKRLIETVNSIHEEMFYLRER 167

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2007196 AT1G69460 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 60/150 (40%), Positives = 89/150 (59%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH--PPT--VSAKVTSPYGN 85
             P++ ++   + S  TKC++E+I SN + +  Y  ID  H     P T  +S KVTS  GN
Sbjct:    20 PISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYN-IDNPHEGQALPQTHKISVKVTSNSGN 78

Query:    86 NLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKK 145
             N HH E V  GQFAF+  EAG+YMACF    +  +V+  ++  +W+ G  +K W +VAKK
Sbjct:    79 NYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVS-LSIDFEWKTGVQSKSWANVAKK 137

Query:   146 DKIEGVELHLKRLEAQVQSIHENLLFLKHR 175
              ++E +E  +K L   V SIHE + +L+ R
Sbjct:   138 SQVEVMEFEVKSLLDTVNSIHEEMYYLRDR 167

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2014864 AT1G14010 [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 56/150 (37%), Positives = 89/150 (59%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PT---VSAKVTSPYGN 85
             PVT +I  ++ S  TKC+SEEI++N + +  Y +I+  H +HP P+   V+ +VTSP G 
Sbjct:    18 PVTLSIRYELLSGHTKCISEEIHANAMTIGKYSIINP-HEDHPLPSSHKVTVRVTSPQGT 76

Query:    86 NLHHNENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKK 145
               H ++ V  GQF+F   E G+Y++CF    +  +     +  DWR G   KDW +VAKK
Sbjct:    77 AYHESDGVESGQFSFVAVETGDYISCFSAVDHKPETT-LIIDFDWRTGIHTKDWSNVAKK 135

Query:   146 DKIEGVELHLKRLEAQVQSIHENLLFLKHR 175
              ++E +E  +K+L   V  IH+ + +L+ R
Sbjct:   136 SQVETMEFEVKKLFETVNGIHDEMFYLRDR 165

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2056730 AT2G03040 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 55/151 (36%), Positives = 87/151 (57%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PT---VSAKVTSPYGN 85
             P T ++  ++ SS TKC+ EEI+ N + +  Y++++     HP P    +  KV  P G 
Sbjct:    18 PRTLSMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDHHPLPDSHKIIVKVMPPQGK 77

Query:    86 NLHHNENVTHGQFAFTTTEAGNYMACFW-LGSNPQKVADATLGLDWRIGFSAKDWESVAK 144
             NLH  +NV  GQF+FT  E G+Y+AC   +   P+     T+  DW+ G  +K+W +VAK
Sbjct:    78 NLHEADNVEAGQFSFTAYENGSYVACITAIDYKPETTL--TIDFDWKTGVHSKEWTNVAK 135

Query:   145 KDKIEGVELHLKRLEAQVQSIHENLLFLKHR 175
             K +++ +E  +K L   V SIHE + +L+ R
Sbjct:   136 KSQVDMMEYQVKTLMDTVISIHEEMYYLRER 166

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2056976 AT2G03290 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 54/151 (35%), Positives = 86/151 (56%)

Query:    30 PVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHP-PT---VSAKVTSPYGN 85
             P T ++  ++ SS TKC+ EEI+ N + +  Y++++     HP P    +  KV  P G 
Sbjct:    18 PRTLSMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGK 77

Query:    86 NLHHNENVTHGQFAFTTTEAGNYMACFW-LGSNPQKVADATLGLDWRIGFSAKDWESVAK 144
             NLH  + V  GQF+FT  E G+Y+AC   +   P+     T+  DW+ G  +K+W +VAK
Sbjct:    78 NLHEADKVEAGQFSFTAYENGSYVACITAIDYKPETTL--TIDFDWKTGVHSKEWTNVAK 135

Query:   145 KDKIEGVELHLKRLEAQVQSIHENLLFLKHR 175
             K +++ +E  +K L   V SIHE + +L+ R
Sbjct:   136 KSQVDMMEYQVKTLMDTVISIHEEMYYLRER 166

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2092788 AT3G29070 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 49/146 (33%), Positives = 84/146 (57%)

Query:    33 EAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEH-PPT--VSAKVTSPYGNNLHH 89
             E++ L + S  TKC+S++I +N + +  Y +++     H PP+  +   V+SP G + HH
Sbjct:    34 ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query:    90 NENVTHGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIE 149
              ENV  G+F FT  E G+YM CF +    +  A   +  +W+ G  AKDW ++AK+ +I 
Sbjct:    94 AENVESGKFVFTAEETGDYMTCF-VAPGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQIT 152

Query:   150 GVELHLKRLEAQVQSIHENLLFLKHR 175
              +E+ +++L    ++IHE +  L  R
Sbjct:   153 MLEVEVRKLLDVTETIHEEMFQLIER 178

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1S2Q3 TMED10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 44/141 (31%), Positives = 78/141 (55%)

Query:    35 IWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT 94
             I   +P +  KC+ EEI+ +++V   Y + D++     P    K+T   G+ L+  E+ T
Sbjct:    32 ISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGPRTHLKITDSAGHILYSKEDAT 91

Query:    95 HGQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELH 154
              G+FAFTT +   +  CF       ++ D  + LD + G  AK++E +AK +K++ +E+ 
Sbjct:    92 KGKFAFTTEDYDMFEVCFE-SKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVE 150

Query:   155 LKRLEAQVQSIHENLLFLKHR 175
             L+RLE   +SI  +  ++K R
Sbjct:   151 LRRLEDLSESIVNDFAYMKKR 171

GO:0070765 "gamma-secretase complex" evidence=IEA

GO:0045055 "regulated secretory pathway" evidence=IEA

GO:0035964 "COPI-coated vesicle budding" evidence=IEA

GO:0034205 "beta-amyloid formation" evidence=IEA

GO:0030667 "secretory granule membrane" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RWM6	P24D5_ARATH	No assigned EC number	0.6521	0.8743	0.7407	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	1e-30

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score =  109 bits (274), Expect = 1e-30
 Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 12/145 (8%)

Query: 34  AIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSP--YGNNLHHNE 91
           A+  ++P+   +C  EE+    +V   Y VI   +      +   +T P   GN ++  E
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGGNL----DIDFTITDPDGNGNVIYSKE 56

Query: 92  NVTH-GQFAFTTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEG 150
           +    G+F+FT TE+G Y  CF   ++    +  T+  D ++G  AKD   +AKK+K++ 
Sbjct: 57  DRKSGGKFSFTATESGEYKFCFS--NSFSTFSSKTVSFDIKVGEEAKD---IAKKEKLDP 111

Query: 151 VELHLKRLEAQVQSIHENLLFLKHR 175
           +E  LK+LE Q+  I     +L+ R
Sbjct: 112 LEEELKKLEDQLNDIKREQKYLRER 136

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
KOG1691	210	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1692	201	consensus Putative cargo transport protein EMP24 (	100.0
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1693	209	consensus emp24/gp25L/p24 family of membrane traff	99.97
KOG3287	236	consensus Membrane trafficking protein, emp24/gp25	99.95
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	99.94
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	94.67
PRK02710	119	plastocyanin; Provisional	93.48
PF13897	136	GOLD_2: Golgi-dynamics membrane-trafficking	92.23
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	91.9
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	91.74
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	91.15
PF13860	81	FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.	91.13
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	87.98
PRK06655	225	flgD flagellar basal body rod modification protein	85.77
PRK05842	295	flgD flagellar basal body rod modification protein	85.53
PF15417	132	DUF4624: Domain of unknown function (DUF4624)	84.21
PF09315	179	DUF1973: Domain of unknown function (DUF1973); Int	83.76
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	83.67
PRK12812	259	flgD flagellar basal body rod modification protein	83.5
PRK12813	223	flgD flagellar basal body rod modification protein	83.09
PF13620	82	CarboxypepD_reg: Carboxypeptidase regulatory-like	81.08

>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.4e-35  Score=224.10  Aligned_cols=153  Identities=46%  Similarity=0.809  Sum_probs=138.7

Q ss_pred             cceeeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCcce
Q 030061           29 VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNY  108 (183)
Q Consensus        29 ~~~~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y  108 (183)
                      +..+.|+.|+||+++++|+.|++.+|..+.|.|.+.++..+..+ .+++.|.||.|+.+++.++.++|+|+|++.++|.|
T Consensus        17 ~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~-~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~~y   95 (210)
T KOG1691|consen   17 LPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSH-KLSVKVTSPYGNNLHSKENVTKGQFAFTAEESGMY   95 (210)
T ss_pred             hhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccc-eEEEEEEcCCCceeehhhccccceEEEEeccCCcE
Confidence            35679999999999999999999999999999999965422223 89999999999999999999999999999999999


Q ss_pred             EEEEEeCCCC-CCCccEEEEEEEEEccccccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030061          109 MACFWLGSNP-QKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPP  182 (183)
Q Consensus       109 ~~Cf~n~~~~-~~~~~~~V~f~i~~g~~~~d~~~~a~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r~r~~  182 (183)
                      .+||.+.... .......|+|||++|.+++||+++||+++++|+|.++++|++.+++|++|+.|+|.||++||++
T Consensus        96 ~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~  170 (210)
T KOG1691|consen   96 EACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNT  170 (210)
T ss_pred             EEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999994332 1235699999999999999999999999999999999999999999999999999999999975

>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-34  Score=214.87  Aligned_cols=144  Identities=17%  Similarity=0.364  Sum_probs=132.3

Q ss_pred             eeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEE
Q 030061           32 TEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMAC  111 (183)
Q Consensus        32 ~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~C  111 (183)
                      +.++-+.+++++++||+|++..|+.+.++|+|.+|+   .. ++++.|++|+|++++..+..+.|+|+|+|+..|.|++|
T Consensus        18 ~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg---~~-~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fC   93 (201)
T KOG1692|consen   18 AAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGG---FL-GVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFC   93 (201)
T ss_pred             hhheeEEEccchhhhHhhhhccCCEEEEEEEEecCC---cc-ceeEEEECCCCchhhhcccccCceEEEEecCCceEEEE
Confidence            578888999999999999999999999999999875   34 99999999999999998888899999999999999999


Q ss_pred             EEeCCCCCCCccEEEEEEEEEccccccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030061          112 FWLGSNPQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPP  182 (183)
Q Consensus       112 f~n~~~~~~~~~~~V~f~i~~g~~~~d~~~~a~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r~r~~  182 (183)
                      |+|..+  +..++.|.|+|++|...+ ++..+++.+.++|+..+++|++.|.+++.||+|+..||++||+.
T Consensus        94 F~N~~s--~mtpk~V~F~ihvg~~~~-~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~  161 (201)
T KOG1692|consen   94 FSNKMS--TMTPKTVMFTIHVGHAPQ-RDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRNT  161 (201)
T ss_pred             ecCCCC--CCCceEEEEEEEEeeccc-cchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            999976  457999999999987755 45588889999999999999999999999999999999999974

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.6e-32  Score=206.55  Aligned_cols=151  Identities=20%  Similarity=0.306  Sum_probs=132.8

Q ss_pred             cceeeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEe--eCC-----CCCCCCeeEEEEECCCCC--eEEeeeccceeeEE
Q 030061           29 VPVTEAIWLQIPSSGTKCVSEEINSNVVVLADYYVI--DEA-----HPEHPPTVSAKVTSPYGN--NLHHNENVTHGQFA   99 (183)
Q Consensus        29 ~~~~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~--~~~-----~~~~~~~v~~~V~dp~g~--~v~~~~~~~~g~f~   99 (183)
                      ...++|++|++..+++|||+|++|+|+++.|+|.+.  +..     ...+. .+.+.|.+|.++  +|.+++..++|+|+
T Consensus        15 ~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~-gm~VeV~e~fdnnh~Vl~q~~ss~G~ft   93 (215)
T KOG1690|consen   15 ATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNI-GMHVEVKETFDNNHVVLSQQYSSEGDFT   93 (215)
T ss_pred             HhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCc-eEEEEeecCCCCceEEEeecCCCCCceE
Confidence            458899999999999999999999999999999986  211     11133 889999999877  89999999999999


Q ss_pred             EEeccCcceEEEEEeCCC-CCCCccEEEEEEEEEccccccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030061          100 FTTTEAGNYMACFWLGSN-PQKVADATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSL  178 (183)
Q Consensus       100 f~a~~~G~Y~~Cf~n~~~-~~~~~~~~V~f~i~~g~~~~d~~~~a~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r  178 (183)
                      |++..+|+|+||+....+ |+.+++.+|.+|+++|..++++++.  ++..+.++.++++|.+++.+|+.||.|+|.||++
T Consensus        94 Fta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~~--ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~RE~~  171 (215)
T KOG1690|consen   94 FTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQI--KETDKLLEGRVRQLNSRLESIRKEQNLQREREET  171 (215)
T ss_pred             EEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999997765 5667889999999999998887654  5677888999999999999999999999999999


Q ss_pred             cCCC
Q 030061          179 FLPP  182 (183)
Q Consensus       179 ~r~~  182 (183)
                      +|++
T Consensus       172 FR~t  175 (215)
T KOG1690|consen  172 FRDT  175 (215)
T ss_pred             HHhh
Confidence            9985

>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.7e-30  Score=196.43  Aligned_cols=147  Identities=14%  Similarity=0.285  Sum_probs=129.5

Q ss_pred             ceeeeEEEEEcCCCcceeeeEcCCCcE-EEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCcce
Q 030061           30 PVTEAIWLQIPSSGTKCVSEEINSNVV-VLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNY  108 (183)
Q Consensus        30 ~~~~al~f~I~~g~~~Cf~e~v~~~~~-v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y  108 (183)
                      ..+..++|+||++.++|||+++++++- .+.+|+|..|+   +. +|++.|.+|+|++|++..++..+.|.|++.+.|+|
T Consensus        19 s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG---~f-DVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y   94 (209)
T KOG1693|consen   19 SEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG---HF-DVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEY   94 (209)
T ss_pred             hhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC---ce-eeEEEEECCCCCEEeeccccccccEEEEEecceEE
Confidence            347899999999999999999998665 99999999886   46 99999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCCCccEEEEEEEEEccccccchhh-hhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030061          109 MACFWLGSNPQKVADATLGLDWRIGFSAKDWESV-AKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPP  182 (183)
Q Consensus       109 ~~Cf~n~~~~~~~~~~~V~f~i~~g~~~~d~~~~-a~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r~r~~  182 (183)
                      +|||+|..+  +..+|.|.++++.|.+..-.++. +....++.+|..+..|+..|+.|.+.|.|+|.||+|.|.|
T Consensus        95 ~fCFsN~fs--tf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~t  167 (209)
T KOG1693|consen   95 TFCFSNEFS--TFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRST  167 (209)
T ss_pred             EEEecCccc--cccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            999999876  45789999999999664332222 2234678999999999999999999999999999999986

>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.3e-26  Score=178.93  Aligned_cols=145  Identities=17%  Similarity=0.297  Sum_probs=125.2

Q ss_pred             eeeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEE
Q 030061           32 TEAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMAC  111 (183)
Q Consensus        32 ~~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~C  111 (183)
                      ...++|+||||+++|||..++.+..+..+|+|.+| ++| . +|++++.+|.|.++.+.+.+..|.+++.+.++|.|++|
T Consensus        33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G-~GD-l-~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~C  109 (236)
T KOG3287|consen   33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDG-AGD-L-DIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVC  109 (236)
T ss_pred             ccceEEEecCCCceeeeeeccCCeEEEEEEEEEec-CCc-c-ceeeEEeCCCccEEeecccccCceeEeeccCCcceEEE
Confidence            46899999999999999999999999999999987 333 4 99999999999999999888999999999999999999


Q ss_pred             EEeCCCCCCCccEEEEEEEEE---cccc---ccchhhhh-----ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030061          112 FWLGSNPQKVADATLGLDWRI---GFSA---KDWESVAK-----KDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFL  180 (183)
Q Consensus       112 f~n~~~~~~~~~~~V~f~i~~---g~~~---~d~~~~a~-----~~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r~r  180 (183)
                      |+|++|++  +.|.|+|++..   |+..   ..|.+.++     ..+++.+++.+..+..+|..+...|..+|+||+|.|
T Consensus       110 fDNsFS~f--s~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr  187 (236)
T KOG3287|consen  110 FDNSFSTF--SRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDR  187 (236)
T ss_pred             EcCccccc--cceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            99999854  68999999943   3222   23443322     247889999999999999999999999999999998


Q ss_pred             C
Q 030061          181 P  181 (183)
Q Consensus       181 ~  181 (183)
                      +
T Consensus       188 ~  188 (236)
T KOG3287|consen  188 N  188 (236)
T ss_pred             H
Confidence            5

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=99.94  E-value=1.8e-28  Score=187.94  Aligned_cols=144  Identities=25%  Similarity=0.467  Sum_probs=0.0

Q ss_pred             eEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEE--CCCCCeEEeeecc-ceeeEEEEeccCcceEE
Q 030061           34 AIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVT--SPYGNNLHHNENV-THGQFAFTTTEAGNYMA  110 (183)
Q Consensus        34 al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~--dp~g~~v~~~~~~-~~g~f~f~a~~~G~Y~~  110 (183)
                      |++|+|+||+++||+|++++++.+.++|.+.+++  +.. .|++.|+  +|+|+.++++... ++|+|+|++.++|+|++
T Consensus         1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~--~~~-~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~i   77 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGG--GAY-DVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQI   77 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeecc--ccc-eEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEE
Confidence            6899999999999999999999999999999664  234 9999999  5556888888655 45799999999999999


Q ss_pred             EEEeCCCCCCCcc-EEEEEEEEEccccccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030061          111 CFWLGSNPQKVAD-ATLGLDWRIGFSAKDWESVAKKDKIEGVELHLKRLEAQVQSIHENLLFLKHRSSLFLPP  182 (183)
Q Consensus       111 Cf~n~~~~~~~~~-~~V~f~i~~g~~~~d~~~~a~~~~l~~le~~l~~l~~~l~~I~~eq~y~r~RE~r~r~~  182 (183)
                      ||+|+.+.+  .+ +.|+|++++|.++.|+++.++++++++++..|+++...++.|+++|+|++.||+++|+.
T Consensus        78 Cf~n~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~  148 (183)
T PF01105_consen   78 CFDNSSSSF--SPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQL  148 (183)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             EEEcCCCCc--cccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999997632  33 99999999998777778889999999999999999999999999999999999999874

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=94.67  E-value=0.14  Score=35.63  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=14.1

Q ss_pred             eeeEEEEeccCcceEE-EEEeCC
Q 030061           95 HGQFAFTTTEAGNYMA-CFWLGS  116 (183)
Q Consensus        95 ~g~f~f~a~~~G~Y~~-Cf~n~~  116 (183)
                      ...+.|++.++|+|.| |=.+..
T Consensus        75 ~~~~~f~~~~~G~y~~~C~~~~~   97 (104)
T PF13473_consen   75 TATVTFTPLKPGEYEFYCTMHPN   97 (104)
T ss_dssp             EEEEEEEE-S-EEEEEB-SSS-T
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCc
Confidence            5678889999999987 865543

>PRK02710 plastocyanin; Provisional

Probab=93.48  E-value=1.9  Score=30.78  Aligned_cols=94  Identities=15%  Similarity=0.130  Sum_probs=46.4

Q ss_pred             hhhHHHHHHHHHHHhhhcccceeeeEEEEEcCCC-cceee---eEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCC
Q 030061           10 RATVLPLILLLCLACYICVVPVTEAIWLQIPSSG-TKCVS---EEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGN   85 (183)
Q Consensus        10 ~~~~~~~~~~~c~~~~~~~~~~~~al~f~I~~g~-~~Cf~---e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~   85 (183)
                      |..+++.+++++.++.......+...++.+.... .-.|.   -+++.|+.|.  +... +..+  + ++.+  .+..+ 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~~~~~~~~~F~P~~i~v~~Gd~V~--~~N~-~~~~--H-~v~~--~~~~~-   76 (119)
T PRK02710          6 RSIAAALVAVVSSFGLGVSSASAETVEVKMGSDAGMLAFEPSTLTIKAGDTVK--WVNN-KLAP--H-NAVF--DGAKE-   76 (119)
T ss_pred             HHHHHHHHHHHHHHHhcccccccceEEEEEccCCCeeEEeCCEEEEcCCCEEE--EEEC-CCCC--c-eEEe--cCCcc-
Confidence            3444455555555554444455667777776432 33555   3566788754  3322 2221  2 3332  22111 


Q ss_pred             eEEee-eccceeeEEEEeccCcceEE-EE
Q 030061           86 NLHHN-ENVTHGQFAFTTTEAGNYMA-CF  112 (183)
Q Consensus        86 ~v~~~-~~~~~g~f~f~a~~~G~Y~~-Cf  112 (183)
                      .-... ...+...++++...+|.|.+ |-
T Consensus        77 ~~~~~~~~~pg~t~~~tF~~~G~y~y~C~  105 (119)
T PRK02710         77 LSHKDLAFAPGESWEETFSEAGTYTYYCE  105 (119)
T ss_pred             ccccccccCCCCEEEEEecCCEEEEEEcC
Confidence            11111 11233456666666999976 85

>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking

Probab=92.23  E-value=2.5  Score=31.08  Aligned_cols=30  Identities=17%  Similarity=-0.001  Sum_probs=24.1

Q ss_pred             EEEeccCcceEEEEEeCCCCCCCccEEEEEEE
Q 030061           99 AFTTTEAGNYMACFWLGSNPQKVADATLGLDW  130 (183)
Q Consensus        99 ~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~f~i  130 (183)
                      +++.+.+|.|-++|+|+.|++  -+|++.+.+
T Consensus       104 s~~c~~~GvYvLkFDNSYS~~--rsK~l~Y~V  133 (136)
T PF13897_consen  104 SHTCPGPGVYVLKFDNSYSWF--RSKKLYYRV  133 (136)
T ss_pred             EEECCCCeEEEEEeeCcceeE--EeeEEEEEE
Confidence            566788999999999999964  467777655

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.90  E-value=1.3  Score=28.32  Aligned_cols=61  Identities=16%  Similarity=0.208  Sum_probs=40.7

Q ss_pred             ceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecc-----ceeeEEEEeccCcceEEEE
Q 030061           45 KCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV-----THGQFAFTTTEAGNYMACF  112 (183)
Q Consensus        45 ~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~-----~~g~f~f~a~~~G~Y~~Cf  112 (183)
                      ..|.-+++++..+.+.-  . +.   .. +.++.+++++|..+......     ..-...|++..+|.|.+=+
T Consensus         3 D~y~f~v~ag~~l~i~l--~-~~---~~-d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    3 DYYSFTVPAGGTLTIDL--S-GG---SG-DADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEEESTTEEEEEEE--C-ET---TS-SEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEEE--c-CC---CC-CeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            35666777777766553  3 22   12 67799999998877663222     2356788899999998744

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=91.74  E-value=2.9  Score=28.37  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=39.6

Q ss_pred             CCcEEEEEEEEeeCC----CCCCCCeeEEEEECCCCCeEEeeec-c--ceeeEEEEe--c---cCcceEEEEEeC
Q 030061           53 SNVVVLADYYVIDEA----HPEHPPTVSAKVTSPYGNNLHHNEN-V--THGQFAFTT--T---EAGNYMACFWLG  115 (183)
Q Consensus        53 ~~~~v~~~y~v~~~~----~~~~~~~v~~~V~dp~g~~v~~~~~-~--~~g~f~f~a--~---~~G~Y~~Cf~n~  115 (183)
                      .|+.|.+.--+.+..    .+.+. .+.+.|+||+|+.+..... .  ..|.++++-  .   ..|.|++=+...
T Consensus        13 PGetV~~~~~~~~~~~~~~~~~~~-~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~   86 (99)
T PF01835_consen   13 PGETVHFRAIVRDLDNDFKPPANS-PVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD   86 (99)
T ss_dssp             TTSEEEEEEEEEEECTTCSCESSE-EEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred             CCCEEEEEEEEeccccccccccCC-ceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence            577777777765433    12234 9999999999999877655 2  344444333  2   258888888875

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=91.15  E-value=3.4  Score=27.98  Aligned_cols=53  Identities=23%  Similarity=0.398  Sum_probs=35.7

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+.+.|.+|+|+.+-.+ .+...|  ..+|+....|.|++.+.-....-..++..+
T Consensus        33 ~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g~~I~gSPF~v   88 (93)
T smart00557       33 ELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGGEHIPGSPFTV   88 (93)
T ss_pred             cEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECCEECCCCCEEE
Confidence            89999999999655332 222345  567888999999998886643212344444

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A

Probab=91.13  E-value=1.5  Score=29.02  Aligned_cols=43  Identities=16%  Similarity=0.260  Sum_probs=28.7

Q ss_pred             CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec--cceeeEEEE
Q 030061           54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN--VTHGQFAFT  101 (183)
Q Consensus        54 ~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~--~~~g~f~f~  101 (183)
                      +..+.+.|.+..+.    . .+.+.|+|.+|++|.+...  .+.|.+.|+
T Consensus        11 ~~~~~~~~~l~~~a----~-~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~   55 (81)
T PF13860_consen   11 GTKGSIEYTLPEDA----D-NVTVTIYDSNGQVVRTISLGSQSAGEHSFT   55 (81)
T ss_dssp             TCEEEEEEEECSSC----E-EEEEEEEETTS-EEEEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEeCCCcc----c-EEEEEEEcCCCCEEEEEEcCCcCCceEEEE
Confidence            35788888887442    3 8999999999999977532  234444444

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=87.98  E-value=2.1  Score=29.90  Aligned_cols=57  Identities=11%  Similarity=0.096  Sum_probs=37.5

Q ss_pred             CCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccc--eeeEEEEe--ccCcceEEEEEeCC
Q 030061           53 SNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVT--HGQFAFTT--TEAGNYMACFWLGS  116 (183)
Q Consensus        53 ~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~--~g~f~f~a--~~~G~Y~~Cf~n~~  116 (183)
                      ++..+.+.|...      .. .+.++|+|.+|++++++....  .....+..  ...|.|.+=+.+..
T Consensus        35 ~~~~l~I~F~~~------~~-~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~   95 (106)
T PF11589_consen   35 DGNNLSIEFESP------IG-DVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGN   95 (106)
T ss_dssp             ETTEEEEEESS--------S-EEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECT
T ss_pred             eCCEEEEEEcCC------CC-CEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCC
Confidence            356677777432      12 999999999999999975433  33455555  56899999999886

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PRK06655 flgD flagellar basal body rod modification protein; Reviewed

Probab=85.77  E-value=4.4  Score=32.49  Aligned_cols=57  Identities=18%  Similarity=0.126  Sum_probs=40.4

Q ss_pred             CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeec--cceeeEEEEe---------ccCcceEEEEEeC
Q 030061           54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNEN--VTHGQFAFTT---------TEAGNYMACFWLG  115 (183)
Q Consensus        54 ~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~--~~~g~f~f~a---------~~~G~Y~~Cf~n~  115 (183)
                      +..+.+.|...++.    . .+.+.|+|.+|++|++..-  ...|.+.|+-         -.+|.|++=+...
T Consensus       112 ~~~~~~~~~l~~~a----~-~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~  179 (225)
T PRK06655        112 GGTTPFGVELPSAA----D-NVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS  179 (225)
T ss_pred             CCceEEEEEcCCCC----c-EEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence            34567777765432    3 8999999999999987533  3477777743         3379999988654

>PRK05842 flgD flagellar basal body rod modification protein; Reviewed

Probab=85.53  E-value=4.6  Score=33.74  Aligned_cols=60  Identities=8%  Similarity=0.043  Sum_probs=39.9

Q ss_pred             cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecc----ceeeEEEEe---------ccCcceEEEEEeC
Q 030061           55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENV----THGQFAFTT---------TEAGNYMACFWLG  115 (183)
Q Consensus        55 ~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~----~~g~f~f~a---------~~~G~Y~~Cf~n~  115 (183)
                      ..+.+.|.+..+...+.. .+.+.|+|.+|++|++-.-.    ..|.+.|+-         -..|.|+|=....
T Consensus       149 ~~~~~~~~l~~~~~~~a~-~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a~  221 (295)
T PRK05842        149 NKLSFSLFFDEKIDASKG-VPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEYN  221 (295)
T ss_pred             CceEEEEeccccccccCc-eEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence            356677766432211233 89999999999999875432    347777774         2369999988643

>PF15417 DUF4624: Domain of unknown function (DUF4624)

Probab=84.21  E-value=11  Score=26.91  Aligned_cols=66  Identities=20%  Similarity=0.323  Sum_probs=42.3

Q ss_pred             CCcceeeeEcCC-CcEEEEEEEEeeCCCCCCCCeeEEEEECCC-CCeEEeeec---cceeeEEEEe---ccCcceEEEEE
Q 030061           42 SGTKCVSEEINS-NVVVLADYYVIDEAHPEHPPTVSAKVTSPY-GNNLHHNEN---VTHGQFAFTT---TEAGNYMACFW  113 (183)
Q Consensus        42 g~~~Cf~e~v~~-~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~-g~~v~~~~~---~~~g~f~f~a---~~~G~Y~~Cf~  113 (183)
                      +.-.|+.+++.. +..  ++|+. +|+      .--+.|+|.+ +.++|+...   .....|+..-   +...+|-+||.
T Consensus        37 ~rLFcVs~Die~L~aE--v~f~m-DGe------~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V~ft  107 (132)
T PF15417_consen   37 GRLFCVSEDIEALDAE--VYFQM-DGE------SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVVCFT  107 (132)
T ss_pred             ceEEEEecchheeeeE--EEEEE-cCc------cceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEEEEe
Confidence            456899988864 333  44544 354      4556788865 567888532   2344566554   55779999999


Q ss_pred             eCC
Q 030061          114 LGS  116 (183)
Q Consensus       114 n~~  116 (183)
                      ...
T Consensus       108 Gtk  110 (132)
T PF15417_consen  108 GTK  110 (132)
T ss_pred             ccE
Confidence            764

>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels

Probab=83.76  E-value=16  Score=28.20  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=39.6

Q ss_pred             cceeeeE--cCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEe-eeccce--eeEEEE-eccCcceEEEEEeCCC
Q 030061           44 TKCVSEE--INSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH-NENVTH--GQFAFT-TTEAGNYMACFWLGSN  117 (183)
Q Consensus        44 ~~Cf~e~--v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~-~~~~~~--g~f~f~-a~~~G~Y~~Cf~n~~~  117 (183)
                      .-+|+-+  +..++.+.+.|...       . ...+.+.+|+|+.+.. ..+...  .++... +.+.|..++.+.|..+
T Consensus        18 ~gtv~ID~tvG~~T~f~v~w~~~-------~-~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~   89 (179)
T PF09315_consen   18 TGTVYIDSTVGNNTVFTVTWQNS-------S-PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSS   89 (179)
T ss_pred             EeEEEECCCCCCCeEEEEEECCC-------C-CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCC
Confidence            3444444  34456666665433       1 5567799999998866 222222  344443 3568999999877654

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=83.67  E-value=2.8  Score=26.51  Aligned_cols=43  Identities=14%  Similarity=0.202  Sum_probs=35.4

Q ss_pred             eeEEEEECCCCCeEEe--eeccceeeEEEEeccCcceEEEEEeCC
Q 030061           74 TVSAKVTSPYGNNLHH--NENVTHGQFAFTTTEAGNYMACFWLGS  116 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~--~~~~~~g~f~f~a~~~G~Y~~Cf~n~~  116 (183)
                      ++.|.+++.++..+..  ..-...|.+.|.--..|.|.+=.....
T Consensus         3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP   47 (70)
T PF05738_consen    3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAP   47 (70)
T ss_dssp             TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETT
T ss_pred             CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECC
Confidence            6889999999888775  444468999999999999999888754

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

>PRK12812 flgD flagellar basal body rod modification protein; Reviewed

Probab=83.50  E-value=5.1  Score=32.83  Aligned_cols=56  Identities=9%  Similarity=0.201  Sum_probs=40.6

Q ss_pred             cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEecc---------CcceEEEEEeC
Q 030061           55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTTE---------AGNYMACFWLG  115 (183)
Q Consensus        55 ~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~--~~~~g~f~f~a~~---------~G~Y~~Cf~n~  115 (183)
                      ..+.+.|.+...    .. .+.+.|+|.+|++|++..  ....|.+.|+-..         .|.|+|=+...
T Consensus       128 ~~~~~~~~l~~~----a~-~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~  194 (259)
T PRK12812        128 ELIALKLYFPED----SD-EGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYN  194 (259)
T ss_pred             ceeEEEEecCCc----Cc-eEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence            467777777533    23 899999999999998754  3346777776644         69999988744

>PRK12813 flgD flagellar basal body rod modification protein; Reviewed

Probab=83.09  E-value=6.1  Score=31.68  Aligned_cols=56  Identities=13%  Similarity=0.061  Sum_probs=39.3

Q ss_pred             CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeecccee--eEEEEe-------ccCcceEEEEEeC
Q 030061           54 NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTHG--QFAFTT-------TEAGNYMACFWLG  115 (183)
Q Consensus        54 ~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~g--~f~f~a-------~~~G~Y~~Cf~n~  115 (183)
                      +..+.+.|...++.    . .+.+.|+|.+|++|++..- ..|  .|.|.-       -..|.|+|=..-.
T Consensus       110 g~~~~~~~~l~~~a----~-~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~  174 (223)
T PRK12813        110 GTPVTISPNPAADA----D-KAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESY  174 (223)
T ss_pred             CceeEEEEeccCCC----c-eEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEE
Confidence            45777888776432    3 8999999999999987643 334  455542       2369999988765

>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A

Probab=81.08  E-value=4.6  Score=26.12  Aligned_cols=43  Identities=16%  Similarity=0.273  Sum_probs=30.2

Q ss_pred             eeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEEEEeCC
Q 030061           74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGS  116 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~Cf~n~~  116 (183)
                      ...+.+.+.++.......-..+|+|.|.--.+|.|.+=+....
T Consensus        16 ~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g   58 (82)
T PF13620_consen   16 GATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPG   58 (82)
T ss_dssp             T-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTT
T ss_pred             CEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECC
Confidence            8888899887777666555579999999666799999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	96.97
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	92.6
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	92.44
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	91.84
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	91.36
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	90.74
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	90.3
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	90.28
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	90.09
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	89.64
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	89.28
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	88.27
3osv_A	138	Flagellar basal-BODY ROD modification protein FLG;	87.16
2e9j_A	119	Filamin-B; beta-sandwich, immunoglobulin-like fold	86.69
2nqc_A	138	Filamin-C; immunoglobulin, metal binding, immune s	86.53
3d33_A	108	Domain of unknown function with AN immunoglobulin	86.38
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	86.33
2dia_A	113	Filamin-B; beta-sandwich, immunoglobulin-like fold	86.12
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.23
3c12_A	138	FLGD, flagellar protein; HOOK capping, IG-like dom	84.82
2w0p_A	94	Filamin-A; alternative splicing, cytoskeleton/comp	83.86
2k7p_A	188	Filamin-A; IG-like, ABP-280, actin binding protein	82.27
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	81.43
2dmc_A	116	Filamin-B; beta-sandwich, immunoglobulin-like fold	80.79
4g9s_B	111	Inhibitor of G-type lysozyme, goose-type lysozyme;	80.27

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=96.97  E-value=0.011  Score=49.81  Aligned_cols=90  Identities=16%  Similarity=0.104  Sum_probs=63.6

Q ss_pred             EEEEcCCCcceeeeEcC-CCcEEEEEEEEeeCCCCCCCCeeEEEEECC-----C---C--CeEEeeecc----ceeeEEE
Q 030061           36 WLQIPSSGTKCVSEEIN-SNVVVLADYYVIDEAHPEHPPTVSAKVTSP-----Y---G--NNLHHNENV----THGQFAF  100 (183)
Q Consensus        36 ~f~I~~g~~~Cf~e~v~-~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp-----~---g--~~v~~~~~~----~~g~f~f  100 (183)
                      ++.|.+|+...+--.+. +|..+...|.+. ++      +|.|.|+=.     +   |  ..+......    .--.-+|
T Consensus       281 ~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~-~~------DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~G~~  353 (403)
T 1olm_A          281 SVQISRGSSHQVEYEILFPGCVLRWQFMSD-GA------DVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTL  353 (403)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEES-SS------CEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEE
T ss_pred             EEEEcCCCEEEEEEEEcCCCCEEEEEEEec-CC------cEEEEEEEecccccccCCCcceEEeeeeeecCccccccCEE
Confidence            48899999999998887 689999999995 32      777777611     1   2  123322111    1124457


Q ss_pred             EeccCcceEEEEEeCCCCCCCccEEEEEEEEEcc
Q 030061          101 TTTEAGNYMACFWLGSNPQKVADATLGLDWRIGF  134 (183)
Q Consensus       101 ~a~~~G~Y~~Cf~n~~~~~~~~~~~V~f~i~~g~  134 (183)
                      .+..+|.|.++|+|+.||+  .+++|.+.+.+-.
T Consensus       354 ~~~~~G~y~l~fdNs~S~~--~~k~l~y~v~v~~  385 (403)
T 1olm_A          354 TCSDPGIYVLRFDNTYSFI--HAKKVNFTVEVLL  385 (403)
T ss_dssp             ECCSCEEEEEEEECTTCCC--CSEEEEEEEEEEC
T ss_pred             EcCCCeEEEEEEeccccce--eceEEEEEEEEeC
Confidence            8999999999999999875  4688888877643

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=92.60  E-value=1.5  Score=29.13  Aligned_cols=65  Identities=20%  Similarity=0.229  Sum_probs=41.2

Q ss_pred             CCCcEEEEEEEEeeCC-CCCCCCeeEEEEECCCCCeEEeeecc--ceeeE--EEEe---ccCcceEEEEEeCC
Q 030061           52 NSNVVVLADYYVIDEA-HPEHPPTVSAKVTSPYGNNLHHNENV--THGQF--AFTT---TEAGNYMACFWLGS  116 (183)
Q Consensus        52 ~~~~~v~~~y~v~~~~-~~~~~~~v~~~V~dp~g~~v~~~~~~--~~g~f--~f~a---~~~G~Y~~Cf~n~~  116 (183)
                      ..|+.|.+..-+.+.. .|...+.+.+.|.||+|+.+.+....  ..|.+  .|..   ...|.|++-.....
T Consensus        14 rPGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~   86 (102)
T 2p9r_A           14 KPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS   86 (102)
T ss_dssp             CTTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred             CCCCEEEEEEEEECCCCcCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence            3577887777666443 22222247899999999998774322  23433  3333   34699999998653

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=92.44  E-value=0.88  Score=30.84  Aligned_cols=86  Identities=19%  Similarity=0.230  Sum_probs=49.5

Q ss_pred             EcCCCcceeeeEcCCCc--EEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEE
Q 030061           39 IPSSGTKCVSEEINSNV--VVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFW  113 (183)
Q Consensus        39 I~~g~~~Cf~e~v~~~~--~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~  113 (183)
                      +.|.+-+|...-+..+.  ....+|.|.....+ .. .+.+.|.+|+|..+..+ .+...|  ..+|+....|.|.+.+.
T Consensus         9 ~d~sk~~v~G~Gl~~~v~~~~~~~F~V~~~~aG-~~-~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~   86 (108)
T 2dj4_A            9 VDPSKVKIAGPGLGSGVRARVLQSFTVDSSKAG-LA-PLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVK   86 (108)
T ss_dssp             CCTTSCEEESTTTSSCCBTTSCEEEEEECTTTC-SC-CEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEE
T ss_pred             cccceeEEECCCcCcCccCCccEEEEEEECCCC-Cc-eEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEE
Confidence            44555556554444331  12245555533322 23 89999999999654332 222345  55678889999999888


Q ss_pred             eCCCCCCCccEEE
Q 030061          114 LGSNPQKVADATL  126 (183)
Q Consensus       114 n~~~~~~~~~~~V  126 (183)
                      -....-...+..|
T Consensus        87 ~~g~~V~gSPF~v   99 (108)
T 2dj4_A           87 YADEEIPRSPFKV   99 (108)
T ss_dssp             ESSSBCTTCSEEE
T ss_pred             ECCEECCCCCEEE
Confidence            6654322345544

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=91.84  E-value=1.5  Score=29.12  Aligned_cols=54  Identities=17%  Similarity=0.188  Sum_probs=37.4

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~  127 (183)
                      .+.+.|.+|+|..+... .+..+|  ...|++.+.|.|.+++.-...+-.+.+..+.
T Consensus        23 ~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v~   79 (93)
T 2d7n_A           23 ELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFY   79 (93)
T ss_dssp             CEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEE
T ss_pred             CEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCEeCCCCCeEEE
Confidence            89999999999865322 222344  6678889999999999876553333555543

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=91.36  E-value=0.23  Score=34.47  Aligned_cols=70  Identities=11%  Similarity=0.060  Sum_probs=50.1

Q ss_pred             EEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCe---EEeeeccceeeEEEEeccCcceEEEEEe
Q 030061           38 QIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNN---LHHNENVTHGQFAFTTTEAGNYMACFWL  114 (183)
Q Consensus        38 ~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~---v~~~~~~~~g~f~f~a~~~G~Y~~Cf~n  114 (183)
                      .|.+++...+.-.+.+|+.+.++.  . +.    . .+-+.|++|+|+.   ++..+....+.|+-+.+.+|.|++=+..
T Consensus        23 ~I~g~~~~~Y~~~a~aGQ~l~V~l--s-~~----~-~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~   94 (114)
T 4dzg_A           23 SFTGYDTIHYTLVAXAGQTMTVXI--G-GS----S-NANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQ   94 (114)
T ss_dssp             CCBTTCCEEEECCC-CCCEEEC-C--E-ES----T-TCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEEC
T ss_pred             EecCCCceEEEEEecCCCEEEEEe--C-CC----C-cEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEe
Confidence            467778888888889999988887  2 21    1 6778899999863   3443333346889999999999998887


Q ss_pred             C
Q 030061          115 G  115 (183)
Q Consensus       115 ~  115 (183)
                      .
T Consensus        95 ~   95 (114)
T 4dzg_A           95 M   95 (114)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=90.74  E-value=1.8  Score=29.51  Aligned_cols=66  Identities=11%  Similarity=0.231  Sum_probs=41.2

Q ss_pred             EEEEeeCCCCCCCCeeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEE
Q 030061           60 DYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (183)
Q Consensus        60 ~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~  127 (183)
                      +|.|...+.+ .. .+.+.|.+|+|+.+..+ .+...|  ..+|+....|.|++.+.-....-...+..|.
T Consensus        33 ~F~V~~~daG-~~-~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~I~gSPF~v~  101 (115)
T 2d7m_A           33 EFTIDARDAG-EG-LLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIH  101 (115)
T ss_dssp             EEEEEESSSC-SS-CEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             EEEEEECCCC-CC-EEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECCEECCCCCEEEE
Confidence            4555433222 23 89999999998754332 222345  5568889999999998876543233555554

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.30  E-value=0.8  Score=30.67  Aligned_cols=53  Identities=13%  Similarity=0.159  Sum_probs=36.3

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+++.|.+|+|+.+-.. .+...|  ...|+..+.|.|++++.-....-.+.+..+
T Consensus        31 ~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~~I~GSPF~v   86 (95)
T 2ee9_A           31 EITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGSHIPESPLQF   86 (95)
T ss_dssp             SEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSCBCTTCSEEE
T ss_pred             CEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCEECCCCCeEE
Confidence            89999999999765332 222344  567788999999999997654322345444

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=90.28  E-value=2.7  Score=29.23  Aligned_cols=55  Identities=18%  Similarity=0.294  Sum_probs=37.0

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLGL  128 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~f  128 (183)
                      .+.+.|.+|+|..+..+ .+...|  ...|+....|.|++.+.-....-...+..|..
T Consensus        44 ~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~v  101 (124)
T 2dmb_A           44 KVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVMA  101 (124)
T ss_dssp             CEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEEEE
T ss_pred             cEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCEECCCCCeEEEE
Confidence            89999999999654332 222344  56788999999999998765432234555533

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=90.09  E-value=2.9  Score=27.77  Aligned_cols=54  Identities=15%  Similarity=0.230  Sum_probs=34.5

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~  127 (183)
                      .+.+.|.+|.|..+..+ .+..+|  ..+|+....|.|.+.+.-...+-..++..+.
T Consensus        40 ~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~~g~~V~gSPf~v~   96 (100)
T 3rgh_A           40 ELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYGGQPVPNFPSKLQ   96 (100)
T ss_dssp             CEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEETTEECTTCSEEEE
T ss_pred             eEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEEEE
Confidence            89999999998754332 222345  5677888899999887755432123444443

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=89.64  E-value=2.7  Score=27.11  Aligned_cols=44  Identities=14%  Similarity=0.172  Sum_probs=30.3

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCC
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSN  117 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~  117 (183)
                      .+.+.|.+|+|..+..+ .+..+|  ..+|+...+|.|.+.+.-...
T Consensus        31 ~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   77 (89)
T 3cnk_A           31 MLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGHE   77 (89)
T ss_dssp             CEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETTE
T ss_pred             cEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECCE
Confidence            78889999998633221 222234  556788999999998886543

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.28  E-value=2.9  Score=28.03  Aligned_cols=53  Identities=15%  Similarity=0.249  Sum_probs=36.7

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEE
Q 030061           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~  127 (183)
                      .+.+.|.+|.+..+ +-.+...|  ..+|+...+|.|.+.+.-...+-...+..|.
T Consensus        43 ~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~   97 (105)
T 2ee6_A           43 GLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFNDEHIPESPYLVP   97 (105)
T ss_dssp             CEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             cEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECCEECCCcCEEEE
Confidence            88999999998655 32333455  7789999999999999866432223455543

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=88.27  E-value=3.9  Score=27.87  Aligned_cols=53  Identities=13%  Similarity=0.132  Sum_probs=35.8

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+++.|.+|+|..+-.. .+...|  ..+|+..+.|.|.+.+.-....-.+.+..|
T Consensus        42 ~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g~~I~GSPF~v   97 (112)
T 2d7p_A           42 VIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKI   97 (112)
T ss_dssp             CEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             CEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECCeEcCCCCEEE
Confidence            89999999999764322 222334  667888999999998886654322355444

>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}

Probab=87.16  E-value=3.2  Score=29.35  Aligned_cols=56  Identities=14%  Similarity=0.085  Sum_probs=39.4

Q ss_pred             cEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEec---------cCcceEEEEEeC
Q 030061           55 VVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTT---------EAGNYMACFWLG  115 (183)
Q Consensus        55 ~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~--~~~~g~f~f~a~---------~~G~Y~~Cf~n~  115 (183)
                      ..+.+.|.+..+.    . .+.+.|+|.+|++|++..  ..+.|.+.|+-.         .+|.|++-+.-.
T Consensus        24 ~~~~~~~~l~~~a----~-~v~v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~v~a~   90 (138)
T 3osv_A           24 DTFKASLNLPVSS----S-NVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTS   90 (138)
T ss_dssp             SCEEEEEEESBCE----E-EEEEEEECTTSCEEEEEEEEEECSEEEEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred             CeEEEEEECCCCC----c-EEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCccEEEEEEEE
Confidence            4577888876432    3 899999999999998853  234565555542         368999988655

>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.69  E-value=3  Score=28.60  Aligned_cols=84  Identities=13%  Similarity=0.224  Sum_probs=47.8

Q ss_pred             cCCCcceeeeEcCC-----CcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEE
Q 030061           40 PSSGTKCVSEEINS-----NVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMAC  111 (183)
Q Consensus        40 ~~g~~~Cf~e~v~~-----~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~C  111 (183)
                      .|++-++...-+..     +...  +|.|...+.+ .. .+.+.|.+|+|..+..+ .+...|  ..+|+....|.|++.
T Consensus        20 d~~~~~~~G~Gl~~~~v~~g~~~--~F~V~~~daG-~~-~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~   95 (119)
T 2e9j_A           20 DASKVTASGPGLSSYGVPASLPV--DFAIDARDAG-EG-LLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIG   95 (119)
T ss_dssp             CGGGEEEESGGGCSSCEETTSCE--EEEEEESSCC-CC-CEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEEC
T ss_pred             CcceeEEECCCcccCceecCCcE--EEEEEECCCC-CC-eEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEEE
Confidence            44444555444432     3333  5555433322 23 88999999998654322 222345  556788899999998


Q ss_pred             EEeCCCCCCCccEEEE
Q 030061          112 FWLGSNPQKVADATLG  127 (183)
Q Consensus       112 f~n~~~~~~~~~~~V~  127 (183)
                      +.-....-...+..|.
T Consensus        96 V~~~g~~V~gSPF~v~  111 (119)
T 2e9j_A           96 VTYGGDDIPLSPYRIR  111 (119)
T ss_dssp             CEESSCBCTTCSEEEE
T ss_pred             EEECCEECCCCCEEEE
Confidence            8866543223455543

>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A

Probab=86.53  E-value=6.9  Score=27.77  Aligned_cols=53  Identities=19%  Similarity=0.279  Sum_probs=35.7

Q ss_pred             eeEEEEECCCCCeEEeeecccee-eEEEEeccCcceEEEEEeCC-CCCCCccEEEE
Q 030061           74 TVSAKVTSPYGNNLHHNENVTHG-QFAFTTTEAGNYMACFWLGS-NPQKVADATLG  127 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~~~~~~g-~f~f~a~~~G~Y~~Cf~n~~-~~~~~~~~~V~  127 (183)
                      .+++.|.+|++..+--.+. .+| ..+|+..++|.|.+-+.-.. .+-...+..|.
T Consensus        77 ~l~v~I~gPs~~~~~~~d~-~dGy~V~YtP~~~G~y~I~Vk~~g~~hI~GSPF~v~  131 (138)
T 2nqc_A           77 ALSVTIDGPSKVQLDCREC-PEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAK  131 (138)
T ss_dssp             CEEEEEESSSCCEEEEEEE-TTEEEEEEECCSCEEEEEEEEESSSCBCTTCSEEEE
T ss_pred             cEEEEEECCCCCeeeEEEC-CCcEEEEEEcCCCEEEEEEEEECCcccCCCCCeEEE
Confidence            8899999999875533332 233 66788899999999887655 32223455554

>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}

Probab=86.38  E-value=3.1  Score=28.50  Aligned_cols=55  Identities=9%  Similarity=0.022  Sum_probs=40.4

Q ss_pred             CcEEEEEEEEeeCCCCCCCCeeEEEEE-CCCCCeEEeeeccce--eeEEEEec--cCcceEEEEEeC
Q 030061           54 NVVVLADYYVIDEAHPEHPPTVSAKVT-SPYGNNLHHNENVTH--GQFAFTTT--EAGNYMACFWLG  115 (183)
Q Consensus        54 ~~~v~~~y~v~~~~~~~~~~~v~~~V~-dp~g~~v~~~~~~~~--g~f~f~a~--~~G~Y~~Cf~n~  115 (183)
                      +..+.++|...       .+.+.++|+ |..|++||++.-...  ..+.+...  .+|+|.+=+.+.
T Consensus        37 ~~~L~I~F~~~-------~~~vtItI~~~~tG~iVY~~~v~~~~~~~~~I~L~~~~~G~Y~L~i~~~   96 (108)
T 3d33_A           37 GYLLTLKNASP-------DRDMTIRITDMAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGT   96 (108)
T ss_dssp             TTEEEEEESSC-------CSEEEEEEEETTTCCEEEEEEECGGGTTEEEEECTTSCSEEEEEEEEEE
T ss_pred             CCEEEEEECCc-------CCCEEEEEEECCCCcEEEEEeecCCCCcEEEEEcCCccCceEEEEEEeC
Confidence            56777777322       129999999 788999999755332  45566664  689999999987

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=86.33  E-value=3.3  Score=27.13  Aligned_cols=44  Identities=16%  Similarity=0.254  Sum_probs=30.0

Q ss_pred             eeEEEEECCCCCeEEe-eecccee--eEEEEeccCcceEEEEEeCCC
Q 030061           74 TVSAKVTSPYGNNLHH-NENVTHG--QFAFTTTEAGNYMACFWLGSN  117 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~-~~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~  117 (183)
                      .+.+.|.+|.|..+.. -.+..+|  ..+|+....|.|.+.+.-...
T Consensus        38 ~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   84 (96)
T 1v05_A           38 MMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGDE   84 (96)
T ss_dssp             CEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETTE
T ss_pred             cEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEECCE
Confidence            8889999999853321 1222344  556788899999998886543

>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=86.12  E-value=4.6  Score=27.33  Aligned_cols=55  Identities=16%  Similarity=0.225  Sum_probs=36.6

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLGL  128 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~f  128 (183)
                      .+.+.|.+|+|..+... .+..+|  ..+|+....|.|++.+.-....-...+..|.+
T Consensus        43 ~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~V~gSPf~v~v  100 (113)
T 2dia_A           43 ALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGELVPHFPARVKV  100 (113)
T ss_dssp             CEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETTEECTTCSEEEEE
T ss_pred             cEEEEEECCCCCEeeEEEEECCCCEEEEEEEeCCCccEEEEEEECCEECCCCCEEEEE
Confidence            88999999988654332 222345  56788899999999998665422234555544

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=85.23  E-value=2.1  Score=28.80  Aligned_cols=53  Identities=19%  Similarity=0.147  Sum_probs=36.2

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+.+.|.+|+|..+-.. .+..+|  ..+|+..+.|.|.+.+.-...+-.+.+..|
T Consensus        32 ~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v   87 (102)
T 2dlg_A           32 DMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQHVTGSPFQF   87 (102)
T ss_dssp             GCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSSBCSSCSEEE
T ss_pred             CEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCEeCCCCCeEE
Confidence            89999999999765432 222344  556888999999999986654322345444

>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}

Probab=84.82  E-value=5.5  Score=28.08  Aligned_cols=54  Identities=15%  Similarity=0.098  Sum_probs=37.9

Q ss_pred             EEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeee--ccceeeEEEEec---------cCcceEEEEEeC
Q 030061           56 VVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNE--NVTHGQFAFTTT---------EAGNYMACFWLG  115 (183)
Q Consensus        56 ~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~--~~~~g~f~f~a~---------~~G~Y~~Cf~n~  115 (183)
                      .+.+.|. ...    .. .+.+.|+|.+|++|.+..  ..+.|.+.|+-.         .+|.|++.+.-.
T Consensus        28 ~~~~~~~-~~~----a~-~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a~   92 (138)
T 3c12_A           28 SAKGVVA-ATS----AG-FVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQT   92 (138)
T ss_dssp             CEEEEEE-ESS----SE-EEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred             eEEEEEe-cCC----CC-EEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEEEEEEEE
Confidence            3566676 532    23 899999999999998754  235666666642         368999999755

>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A

Probab=83.86  E-value=6.9  Score=25.46  Aligned_cols=53  Identities=13%  Similarity=0.255  Sum_probs=34.8

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEE
Q 030061           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~  127 (183)
                      .+.+.|.+|.+..+.-.++ .+|  ..+|+...+|.|.+.+.-...+-..++..|.
T Consensus        35 ~~~v~v~gp~~~~~~v~d~-~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~   89 (94)
T 2w0p_A           35 GLAIAVEGPSKAEISFEDR-KDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVP   89 (94)
T ss_dssp             CEEEEEEESSCCEEEEEEC-TTSCEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             cEEEEEECCCCCeEEEEEC-CCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            7888888998855433332 344  6678889999999998865432223455544

>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}

Probab=82.27  E-value=12  Score=27.62  Aligned_cols=53  Identities=11%  Similarity=0.157  Sum_probs=36.3

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEE
Q 030061           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~  127 (183)
                      .+.+.|.+|.+..+.-.+ ..+|  ..+|+....|.|.+++.-...+-.+.+..|.
T Consensus       129 ~l~v~I~gp~~~~~~~~d-~~dGty~v~Y~p~~~G~y~i~V~~~g~~I~gSPF~v~  183 (188)
T 2k7p_A          129 GLSLAIEGPSKAEISCTD-NQDGTCSVSYLPVLPGDYSILVKYNEQHVPGSPFTAR  183 (188)
T ss_dssp             CEEEEEECSSCCEEEEEE-CTTSEEEEEEECCSSEEEEEEEEETTEECTTCSEEEE
T ss_pred             CeEEEEeCCCCCeEEEEE-CCCCEEEEEEEeCCCEEEEEEEEECCEECCCCCEEEE
Confidence            788999999885553333 2355  7788999999999999866532223445544

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=81.43  E-value=6  Score=32.47  Aligned_cols=95  Identities=11%  Similarity=0.083  Sum_probs=58.5

Q ss_pred             ceeeeEEEEEcCCCcceeeeEcCC-CcEE--EEEEEEeeCCCCCCCCeeEEEEECCCCCeEEe---eecccee--eEEEE
Q 030061           30 PVTEAIWLQIPSSGTKCVSEEINS-NVVV--LADYYVIDEAHPEHPPTVSAKVTSPYGNNLHH---NENVTHG--QFAFT  101 (183)
Q Consensus        30 ~~~~al~f~I~~g~~~Cf~e~v~~-~~~v--~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~---~~~~~~g--~f~f~  101 (183)
                      .+...+.-...|.+.+|+.--+.. +..+  ..+|.|...+.+ .- .+++.|.+|+|..+-.   ..+...|  ..+|+
T Consensus       243 ~~~~~l~~k~~pskv~a~GpGle~~g~~vg~p~~F~Vdt~~AG-~g-~l~v~V~~P~G~~~~~~v~~~~~~~gty~v~y~  320 (347)
T 4b7l_A          243 KPGAPLKPKLNPKKARAYGRGIEPTGNMVKQPAKFTVDTISAG-QG-DVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEYL  320 (347)
T ss_dssp             CTTCCCCCSCCGGGCEEESGGGSSSCCCTTSCEEEEEECTTTC-SC-CEEEEEECTTSCEEECEEEESSTTCSEEEEEEC
T ss_pred             CccccccccccccceeEEeccccccCceeCCEEEEEEEeCCCC-CC-ceEEEEECCCCCeecCEEEEEcCCCCEEEEEEE
Confidence            445555666777788888887764 2221  345555533322 22 8999999999976532   2222345  45788


Q ss_pred             eccCcceEEEEEeCCCCCCCccEEE
Q 030061          102 TTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus       102 a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      +.+.|.|++-+.-....-.+++..|
T Consensus       321 P~~~G~~~I~V~~~g~~IpgSPF~v  345 (347)
T 4b7l_A          321 PKVTGLHKVTVLFAGQHISKSPFEV  345 (347)
T ss_dssp             CCSSSEEEEEEEETTEECTTCSEEE
T ss_pred             ECCCEeEEEEEEECCEECCCCCEEe
Confidence            9999999998876543222345544

>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=80.79  E-value=3.7  Score=28.23  Aligned_cols=53  Identities=13%  Similarity=0.267  Sum_probs=36.0

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+++.|.+|+|+.+-.. .+..+|  ..+|+..+.|.|.+.+.-...+-.+.+..|
T Consensus        46 ~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~~I~GSPF~v  101 (116)
T 2dmc_A           46 SLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSPVSI  101 (116)
T ss_dssp             TBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSSBCTTCSEEE
T ss_pred             CEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCEECCCCCeEE
Confidence            88999999999754322 112334  668899999999999886654323355444

>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A

Probab=80.27  E-value=4.5  Score=27.46  Aligned_cols=74  Identities=7%  Similarity=-0.064  Sum_probs=52.9

Q ss_pred             eeEEEEEcCCCcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEee---eccceeeEEEEeccCcceE
Q 030061           33 EAIWLQIPSSGTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHN---ENVTHGQFAFTTTEAGNYM  109 (183)
Q Consensus        33 ~al~f~I~~g~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~---~~~~~g~f~f~a~~~G~Y~  109 (183)
                      ..+.=.|.+++...+.-.+.+|+.+.++..   .+      ...+.|..|.+......   ......++..+.+.+|+|+
T Consensus        16 a~v~G~I~g~~~~~Y~~~a~aGQ~l~v~l~---s~------~~~~~i~~pg~~~~~~~~~~~~~~~~~~~~~LP~sG~Y~   86 (111)
T 4g9s_B           16 AQYSGEIKGYDYDTYTFYAKKGQKVHVSIS---NE------GADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKYE   86 (111)
T ss_dssp             EEEEEEEETTCCEEEEEEECTTCEEEEEES---CT------TCEEEEECTTCSSCEECSTTCTTCCTTSCEECSSSEEEE
T ss_pred             eEEEEEEeCCCceEEEEEecCCCEEEEEEe---cC------CccEEEECCCCccccccccccccCCceEEEEecCCccEE
Confidence            345667888888999999999999988753   21      44566888876543322   1223457888899999999


Q ss_pred             EEEEeC
Q 030061          110 ACFWLG  115 (183)
Q Consensus       110 ~Cf~n~  115 (183)
                      +=+...
T Consensus        87 I~V~~~   92 (111)
T 4g9s_B           87 LRVLQT   92 (111)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	98.1
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	94.73
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	92.81
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	92.68
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	92.62
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	92.61
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.46
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	90.8
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.52
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	88.04
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	86.1
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	86.0
d1nqja_	101	Class 1 collagenase {Bacteria (Clostridium histoly	85.62
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	85.02
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	84.41
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	83.59
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	83.14
d2diba1	115	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	80.15

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.6e-05  Score=52.34  Aligned_cols=91  Identities=15%  Similarity=0.106  Sum_probs=62.5

Q ss_pred             EEEEcCCCcceeeeEcC-CCcEEEEEEEEeeCCCCCCCCeeEEEEECC--CC--------CeEEeeecc--ce--eeEEE
Q 030061           36 WLQIPSSGTKCVSEEIN-SNVVVLADYYVIDEAHPEHPPTVSAKVTSP--YG--------NNLHHNENV--TH--GQFAF  100 (183)
Q Consensus        36 ~f~I~~g~~~Cf~e~v~-~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp--~g--------~~v~~~~~~--~~--g~f~f  100 (183)
                      ++.|.+|+...+--.+. +|+.+...|++. +.      +|.|.|+=.  .|        ..+......  ..  -.=+|
T Consensus         7 tvtV~~G~~~~v~~~v~~~Gs~l~WeF~t~-~~------DI~Fgv~~~~~~~~~~~~~~~~~v~p~~r~~s~~~p~~g~~   79 (119)
T d1olma2           7 SVQISRGSSHQVEYEILFPGCVLRWQFMSD-GA------DVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTL   79 (119)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEES-SS------CEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEE
T ss_pred             EEEECCCCEEEEEEEEeCCCcEEEEEEEeC-Cc------cEEEEEEEecccCCccccCceEEEeeeEEecCCceeEccEE
Confidence            56789998877777775 589999999875 32      777777621  11        123322111  11  13457


Q ss_pred             EeccCcceEEEEEeCCCCCCCccEEEEEEEEEccc
Q 030061          101 TTTEAGNYMACFWLGSNPQKVADATLGLDWRIGFS  135 (183)
Q Consensus       101 ~a~~~G~Y~~Cf~n~~~~~~~~~~~V~f~i~~g~~  135 (183)
                      .+..+|.|.+||+|++||+  .+|.|.+.+++-.+
T Consensus        80 ~~~~~G~Y~l~FDNs~S~~--~sK~l~Y~i~v~~P  112 (119)
T d1olma2          80 TCSDPGIYVLRFDNTYSFI--HAKKVNFTVEVLLP  112 (119)
T ss_dssp             ECCSCEEEEEEEECTTCCC--CSEEEEEEEEEECC
T ss_pred             EcCCCEEEEEEEeCCcceE--EeeEEEEEEEEECC
Confidence            7889999999999999975  67999999887443

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.16  Score=32.70  Aligned_cols=53  Identities=13%  Similarity=0.287  Sum_probs=36.7

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+++.|.+|+|+.+-.+ .+...|  ..+|+....|.|++.+......-...+..|
T Consensus        38 ~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~~I~gSPF~v   93 (102)
T d2d7ma1          38 LLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRI   93 (102)
T ss_dssp             CEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             cEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECCEECCCCCEEE
Confidence            89999999999765332 222345  458999999999999886654323355554

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.43  Score=30.34  Aligned_cols=53  Identities=13%  Similarity=0.132  Sum_probs=36.2

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+++.|.+|+|..+-.. .+...|  ..+|++...|.|++.+......-...+..+
T Consensus        35 ~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g~~I~gSPf~v   90 (99)
T d2d7pa1          35 VIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKI   90 (99)
T ss_dssp             CEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             eEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECCEECCCCCEEE
Confidence            89999999999765332 222345  456899999999998887654322345544

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.34  Score=30.46  Aligned_cols=53  Identities=13%  Similarity=0.255  Sum_probs=36.4

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEE
Q 030061           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~  127 (183)
                      .+++.|.+|++..+--.+. ..|  ..+|++...|.|++.+.-....-..++..|.
T Consensus        34 ~l~v~v~gp~~~~v~v~d~-~dg~y~v~ytP~~~G~y~i~V~~~g~~I~gSPF~v~   88 (92)
T d2w0pa1          34 GLAIAVEGPSKAEISFEDR-KDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVP   88 (92)
T ss_dssp             CEEEEEEESSCCEEEEEEC-TTSCEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             ceEEEEEeCCceEEEEEEC-CCCEEEEEEEECCCceEEEEEEECCEECCCCCeEEE
Confidence            7888999999876643333 355  4589999999999988765432223455543

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.56  Score=29.28  Aligned_cols=52  Identities=13%  Similarity=0.198  Sum_probs=35.0

Q ss_pred             eeEEEEECCCCCeEEeeeccceeeE--EEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLHHNENVTHGQF--AFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~~~~~~g~f--~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+.+.|.+|.+..+.-.+. ..|.|  +|++.+.|.|.+-+.-....-...+..+
T Consensus        35 ~l~v~v~~p~~~~~~v~~~-~dg~y~v~ytP~~~G~h~i~V~~~g~~I~GSPF~v   88 (92)
T d2bp3a1          35 GLSLAIEGPSKAEISCTDN-QDGTCSVSYLPVLPGDYSILVKYNEQHVPGSPFTA   88 (92)
T ss_dssp             EEEEEEEESSCCEEEEEEC-SSSEEEEEEECSSCEEEEEEEEETTEECTTCSEEE
T ss_pred             ceEEEEEeCCCceEEEEEC-CCCEEEEEEEECCCccEEEEEEECCEECCCCCEEE
Confidence            8899999999876544433 35654  6999999999997765433222344444

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.56  Score=30.36  Aligned_cols=54  Identities=19%  Similarity=0.306  Sum_probs=37.7

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~  127 (183)
                      .+.+.|.+|+|+.+--. .+..+|  ..+|+..+.|.|++.+......-.+.+..|.
T Consensus        37 ~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g~~I~gSPf~v~   93 (111)
T d2dmba1          37 KVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVM   93 (111)
T ss_dssp             CEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             cEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECCEECCCCCEEEE
Confidence            89999999999875332 222355  5688999999999998876543233455543

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.64  Score=29.30  Aligned_cols=53  Identities=13%  Similarity=0.223  Sum_probs=35.4

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEE
Q 030061           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~  127 (183)
                      .+.+.|.+|++..+--.+. ..|  ..+|++.+.|.|.+.+.-....-.+.+..|.
T Consensus        36 ~l~v~v~~p~~~~~~v~~~-~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v~   90 (98)
T d2dica1          36 GLGITVEGPSESKINCRDN-KDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRVP   90 (98)
T ss_dssp             CEEEEEESSSCCCCEEEEC-SSSCEEEEECCSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             CcEEEEEeCCCcEEEEEEC-CCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            7889999998865533322 344  4568999999999988765433223455553

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.6  Score=29.61  Aligned_cols=53  Identities=17%  Similarity=0.251  Sum_probs=35.6

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+++.|.+|+|..+--+ .+...|  ...|+....|.|++-+.-....-.+.+..+
T Consensus        37 ~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v   92 (101)
T d2dj4a1          37 PLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKV   92 (101)
T ss_dssp             CEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSSBCTTCSEEE
T ss_pred             CEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEEE
Confidence            88999999999875332 222345  567888999999998865543222345544

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=1.5  Score=27.46  Aligned_cols=53  Identities=15%  Similarity=0.232  Sum_probs=35.9

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEE
Q 030061           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~  127 (183)
                      .+++.|.+|++..+.-.+. ..|  ..+|++...|.|.+.+.-....-.+.+..|.
T Consensus        36 ~l~v~i~gp~~~~v~v~~~-~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v~   90 (98)
T d2di8a1          36 GISLAVEGPSKVDIQTEDL-EDGTCKVSYFPTVPGVYIVSTKFADEHVPGSPFTVK   90 (98)
T ss_dssp             CEEEEEESSSCCCEECCBC-TTSCEEEEECCCSCSEEEEEEEESSCBCTTCSEEEE
T ss_pred             ceEEEEEeCCCceEEEEEC-CCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            8889999998866533322 345  4568999999999988765543233555553

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.04  E-value=1.9  Score=26.73  Aligned_cols=53  Identities=13%  Similarity=0.179  Sum_probs=35.2

Q ss_pred             eeEEEEECCCCCeEE-eeecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLH-HNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~-~~~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+++.|.+|+|..+- .-.+...|  ..+|+.++.|.|++.+......-.+.+..+
T Consensus        38 ~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g~~I~gSPf~v   93 (96)
T d1v05a_          38 MMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKV   93 (96)
T ss_dssp             CEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETTEECTTCSEEE
T ss_pred             ceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECCEECCCCCEEE
Confidence            789999999986642 22222344  568899999999999886654222344443

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.10  E-value=0.56  Score=29.08  Aligned_cols=44  Identities=20%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             eeEEEEECCCCCeEEee-eccceeeE--EEEeccCcceEEEEEeCCC
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHGQF--AFTTTEAGNYMACFWLGSN  117 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g~f--~f~a~~~G~Y~~Cf~n~~~  117 (183)
                      ++++.|.+|+|+.+-.+ .....|.|  .|+....|.|.+-+.....
T Consensus        25 ~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~g~   71 (88)
T d2j3sa2          25 DMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKGQ   71 (88)
T ss_dssp             CEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETTE
T ss_pred             cEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEECCE
Confidence            89999999999886543 22235544  5899999999998876543

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.00  E-value=2.6  Score=26.17  Aligned_cols=54  Identities=17%  Similarity=0.201  Sum_probs=36.3

Q ss_pred             eeEEEEECCCCCeEEeeeccceeeEEEEeccCcceEEEEEeCC-CCCCCccEEEE
Q 030061           74 TVSAKVTSPYGNNLHHNENVTHGQFAFTTTEAGNYMACFWLGS-NPQKVADATLG  127 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~~~~~~g~f~f~a~~~G~Y~~Cf~n~~-~~~~~~~~~V~  127 (183)
                      .+++.|.+|+|..+--+.+...=..+|++...|.|.+.+.-.. ..-.+++..|.
T Consensus        36 ~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~~~g~~~I~gSPF~v~   90 (97)
T d2nqca1          36 ALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAK   90 (97)
T ss_dssp             CEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEESSSCBCTTCSEEEE
T ss_pred             ceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEEECCccccCCcCEEEE
Confidence            8899999999976644433233467899999999999886433 22223555553

>d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}

class: All beta proteins
fold: CUB-like
superfamily: Collagen-binding domain
family: Collagen-binding domain
domain: Class 1 collagenase
species: Bacteria (Clostridium histolyticum) [TaxId: 1498]

Probab=85.62  E-value=1.8  Score=26.93  Aligned_cols=66  Identities=14%  Similarity=-0.004  Sum_probs=40.7

Q ss_pred             CcceeeeEcCCCcEEEEEEEEeeCCCCCCCCeeEEEEECCCCCeEEeeeccce--eeEEEEeccCcceEEEEEe
Q 030061           43 GTKCVSEEINSNVVVLADYYVIDEAHPEHPPTVSAKVTSPYGNNLHHNENVTH--GQFAFTTTEAGNYMACFWL  114 (183)
Q Consensus        43 ~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~v~~~V~dp~g~~v~~~~~~~~--g~f~f~a~~~G~Y~~Cf~n  114 (183)
                      ...=|.-+++++..+.++..-..+     . ++++.++|++|..+........  .........+|.|-+=+..
T Consensus        21 d~D~y~f~l~~~~~v~i~l~~~~~-----~-d~~l~lyd~~g~~~~~~~~~~~~~~~~~~~~~~~GtYyi~V~~   88 (101)
T d1nqja_          21 SRDYYSFEVKEEGEVNIELDKKDE-----F-GVTWTLHPESNINDRITYGQVDGNKVSNKVKLRPGKYYLLVYK   88 (101)
T ss_dssp             CEEEEEEEESSCEEEEEEEEESSS-----S-EEEEEEEECC----CCEECEEETTEEEEEEEECSEEEEEEEEE
T ss_pred             cceEEEEECCCCCEEEEEEeCCcc-----C-CeEEEEEcCCCCEEEEecCCCCCceEEEEEecCCeEEEEEEEe
Confidence            456667778888888877764322     2 8999999999988755433222  2333334568999887764

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.02  E-value=0.93  Score=28.65  Aligned_cols=44  Identities=18%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             eeEEEEECCCCCeEEee-eccceeeE--EEEeccCcceEEEEEeCCC
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHGQF--AFTTTEAGNYMACFWLGSN  117 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g~f--~f~a~~~G~Y~~Cf~n~~~  117 (183)
                      .+++.|.+|+|..+-.. .+...|.|  +|++...|.|++-+.....
T Consensus        45 ~~~v~v~~p~g~~~~~~v~d~~dGtY~v~y~p~~~G~~~i~V~~~g~   91 (104)
T d1qfha1          45 PFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRGN   91 (104)
T ss_dssp             CEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEETTE
T ss_pred             eeEEEEECCCCCEEeeEEEECCCCEEEEEEEeCCCEeEEEEEEECCE
Confidence            78999999998765332 22345644  7888999999998876543

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.41  E-value=3.1  Score=25.77  Aligned_cols=53  Identities=17%  Similarity=0.229  Sum_probs=36.1

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+++.|.+|+|+.+-.. .+...|  ..+|+..+.|.|++.+......-.+.+..+
T Consensus        36 ~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~~V~gSPf~v   91 (100)
T d2diaa1          36 ALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGELVPHFPARV   91 (100)
T ss_dssp             CEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETTEECTTCSEEE
T ss_pred             cEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEECCEECCCCCEEE
Confidence            88999999998765332 222344  678999999999999986654222344444

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=1.5  Score=27.55  Aligned_cols=53  Identities=13%  Similarity=0.281  Sum_probs=33.8

Q ss_pred             eeEEEEECCCCCeEEee-eccceee--EEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHGQ--FAFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g~--f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+++.|.+|+|+.+-.. .....|.  .+|+..+.|.|++=+.-....-.+.+..|
T Consensus        39 ~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V~~~g~~i~gSPf~v   94 (103)
T d2dmca1          39 SLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSPVSI   94 (103)
T ss_dssp             TBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSSBCTTCSEEE
T ss_pred             cEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEEEECCEECCCCCEEE
Confidence            88899999999865322 2223454  56999999999985554333222345554

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.14  E-value=4  Score=26.05  Aligned_cols=53  Identities=13%  Similarity=0.253  Sum_probs=37.0

Q ss_pred             eeEEEEECCCCCeEEeeecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEEE
Q 030061           74 TVSAKVTSPYGNNLHHNENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATLG  127 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V~  127 (183)
                      .+.+.|.+|++..+.-.+. ..|  ..+|+....|.|++...-....-.+.+.+|.
T Consensus        56 ~l~v~i~~p~~~~~~v~~~-~dG~y~v~ytP~~~G~y~i~V~~~g~~i~gSPf~v~  110 (118)
T d2di9a1          56 GLGLTVEGPCEAKIECSDN-GDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFKAD  110 (118)
T ss_dssp             CEEEEECSSSCCEEEEEEC-SSSEEEEEEECSSSSEEEEEEEESSCBCTTCSEEEE
T ss_pred             ccEEEEecCCceEEEEEEC-CCCEEEEEEEeCCcEeEEEEEEECCEECCCCCEEEE
Confidence            8889999999876533332 344  5688999999999998876543233555553

>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.15  E-value=2.7  Score=26.88  Aligned_cols=53  Identities=17%  Similarity=0.223  Sum_probs=35.7

Q ss_pred             eeEEEEECCCCCeEEee-ecccee--eEEEEeccCcceEEEEEeCCCCCCCccEEE
Q 030061           74 TVSAKVTSPYGNNLHHN-ENVTHG--QFAFTTTEAGNYMACFWLGSNPQKVADATL  126 (183)
Q Consensus        74 ~v~~~V~dp~g~~v~~~-~~~~~g--~f~f~a~~~G~Y~~Cf~n~~~~~~~~~~~V  126 (183)
                      .+++.|.+|+|..+-.. .+...|  ..+|+....|.|++.+.-....-.+.+.+|
T Consensus        51 ~l~v~v~~p~g~~v~~~v~~~~dG~y~v~y~P~~~G~~~i~V~~~g~~I~gSPf~v  106 (115)
T d2diba1          51 HIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDVPIPNSPFKV  106 (115)
T ss_dssp             CCCEECCCSSSCCCCCEEEECSSSEEEEEECCSSCSEEEEEEBSSSCBCTTCSEEE
T ss_pred             cEEEEEEeCCCCEeeeEEEECCCCEEEEEEEeCCCEeEEEEEEECCEECCCCCEEE
Confidence            88899999999765221 222345  568888999999999876554322345544