Citrus Sinensis ID: 030076

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGFC
Secondary Structure (PSIPRED)
ccccccccEEEEcccHHHHHHHHHHHcccccHHHHHHHcccccccccEEccccEEccccEEccccEEccccEEccccEEccccEEccccEEccccEEccccEEEcEEEcccEEEccccEEccccccccccccccEEEEcEEEEEEEccccEEcccccccccccccEEEccccEEccccEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHcccEEEEEccHHHHHHHHHHHccccccccccccccccccccEEEccccEEcccEEEcccEEEcccEEEcccEEEcccEEEcccEEEccccEEccEEEEEEEEEcccEEEEccEEEccccccccccccccEEEEcccEEEEEcccEEEEcccEEccccccccEEcccEEEccEEEEEEc
Coil and Loop (DISEMBL)
MAVKRFVHYYRLTKTYKqdfgrfcnlfstksDIESRQQFQKwhngggifhqsacidstvlIEVGAIVHSKAVLGanvcigsgtvvgpavtigqstnigfNVALSnciigdsciihngvcigqdgfgffvdehgnmlkkpqllnarignhveiganscidrgswrdtvigdhskidnlvqvgfc
Flexible Loop (DISEMBL)
mavkrfvhyyrltktykqdfgrFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVigdhskidnlvqvgfc
Low Complexity Region (SEG)
MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGFC
Disordered region (IsUnstruct)
***KRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG**
Disordered Region (DISOPRED)
*A*KRFVHYYRLTKTYKQDFGRFCNLFSTKSDIES***********GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGFC
Disordered Region (DISEMBL)
MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGFC
Disordered Region (DISPRO)
MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGFC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGFC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
F4JIP6	304	Probable UDP-3-O-acylgluc	yes	no	0.846	0.509	0.683	1e-57
F4JGP6	330	Probable UDP-3-O-acylgluc	no	no	0.825	0.457	0.643	2e-53
Q89KQ2	355	UDP-3-O-acylglucosamine N	yes	no	0.770	0.397	0.493	3e-27
A5EK46	355	UDP-3-O-acylglucosamine N	yes	no	0.879	0.453	0.441	2e-26
A4YVF7	355	UDP-3-O-acylglucosamine N	yes	no	0.770	0.397	0.466	7e-26
Q3SMZ4	341	UDP-3-O-acylglucosamine N	yes	no	0.704	0.378	0.5	1e-25
Q11IJ0	350	UDP-3-O-acylglucosamine N	yes	no	0.890	0.465	0.397	2e-25
A6U8L0	354	UDP-3-O-acylglucosamine N	yes	no	0.704	0.364	0.481	3e-25
Q2W4D3	339	UDP-3-O-acylglucosamine N	yes	no	0.890	0.480	0.4	5e-25
Q8UFL5	355	UDP-3-O-acylglucosamine N	yes	no	0.710	0.366	0.459	1e-24

>sp|F4JIP6|LPXD2_ARATH Probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial OS=Arabidopsis thaliana GN=LPXD2 PE=3 SV=1

 Score =  222 bits (566), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 126/155 (81%)

Query: 27  FSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG 86
             T   I  ++ F +W NGGG  H SA I S+ L+E GA+VH KAVLGA V +GSGTV+G
Sbjct: 61  LKTGGGIIVKEGFLRWENGGGTCHSSAQIYSSALVEFGAVVHEKAVLGAEVHVGSGTVIG 120

Query: 87  PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARI 146
           P+V IG ST IG+NV++SNC IGDSC+IHNGVCIGQDGFGF+VDEHGNM+KKPQ LN +I
Sbjct: 121 PSVDIGPSTRIGYNVSISNCSIGDSCVIHNGVCIGQDGFGFYVDEHGNMVKKPQTLNVKI 180

Query: 147 GNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
           GN VEIGAN+CIDRGSWR+TVI D +KIDNLVQ+G
Sbjct: 181 GNRVEIGANTCIDRGSWRETVIEDDTKIDNLVQIG 215

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Catalyzes the N-acylation of UDP-3-O-(hydroxymyristoyl)glucosamine using 3-hydroxymyristoyl-ACP as the acyl donor. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|F4JGP6|LPXD1_ARATH Probable UDP-3-O-acylglucosamine N-acyltransferase 1, mitochondrial OS=Arabidopsis thaliana GN=LPXD1 PE=2 SV=1

 Score =  207 bits (528), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/157 (64%), Positives = 123/157 (78%), Gaps = 6/157 (3%)

Query: 25  NLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTV 84
           +L  T S     + F +W NGGG++H+SA IDS+ L+E GA+VH +A+LGA V IGS TV
Sbjct: 66  DLLETSSGGNVEKGFLRWRNGGGMYHRSALIDSSALVEFGAVVHQEAILGAEVHIGSNTV 125

Query: 85  VGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA 144
           +G +V IG ST IG      NC IGD C+IHNGVCIGQDGFGF+VD++GNM+KKPQ LN 
Sbjct: 126 IGSSVKIGPSTKIG------NCSIGDLCVIHNGVCIGQDGFGFYVDDNGNMVKKPQTLNV 179

Query: 145 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
           +IGN VEIGAN+CIDRGSWRDTVIGD +KIDNLVQ+G
Sbjct: 180 KIGNRVEIGANTCIDRGSWRDTVIGDDTKIDNLVQIG 216

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Catalyzes the N-acylation of UDP-3-O-(hydroxymyristoyl)glucosamine using 3-hydroxymyristoyl-ACP as the acyl donor. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q89KQ2|LPXD_BRAJA UDP-3-O-acylglucosamine N-acyltransferase OS=Bradyrhizobium japonicum (strain USDA 110) GN=lpxD PE=3 SV=1

 Score =  121 bits (303), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 89/148 (60%), Gaps = 7/148 (4%)

Query: 40  QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG------PAVTIGQ 93
           Q W    GI   SA ID T  +E G IV   AV+GA+V IGSGTVVG      P V IG+
Sbjct: 111 QSWVGNDGI-APSAIIDPTARLEDGVIVDPLAVIGADVEIGSGTVVGVGAVIGPGVKIGR 169

Query: 94  STNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG 153
             N+G   A+   +IG+  +IH G  IGQDG+GF        LK PQ     I N+VE+G
Sbjct: 170 DCNVGARTAIQCALIGNDVLIHPGCSIGQDGYGFIFFGPEGHLKVPQTGRVLIQNNVEVG 229

Query: 154 ANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
           A + IDRGS RDTVIG+ +KIDN VQ+G
Sbjct: 230 AGTTIDRGSLRDTVIGEGTKIDNQVQIG 257

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|A5EK46|LPXD_BRASB UDP-3-O-acylglucosamine N-acyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=lpxD PE=3 SV=1

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 94/170 (55%), Gaps = 9/170 (5%)

Query: 18  QDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANV 77
           Q F  F  L  T      R Q   W    GI  Q A ID +  +E G +V   AV+GA+V
Sbjct: 91  QPFRAFVQLARTMHADALRPQ--SWFGCDGISSQ-AIIDPSARLEDGVVVEPLAVIGAHV 147

Query: 78  CIGSGTVVG------PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE 131
            IG+GT+VG      P V IG+  N+G    +   +IG+  +IH    IGQDG+GF    
Sbjct: 148 EIGAGTIVGAGAVIGPHVKIGRDCNVGARTVIQCALIGNDVLIHPACAIGQDGYGFIFFG 207

Query: 132 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
            G  +K PQ     I NHVEIGA + IDRGS RDTVIG+ +KIDN VQ+G
Sbjct: 208 PGGHVKVPQTGRVIIQNHVEIGAGTTIDRGSLRDTVIGEGTKIDNQVQIG 257

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|A4YVF7|LPXD_BRASO UDP-3-O-acylglucosamine N-acyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=lpxD PE=3 SV=1

 Score =  116 bits (291), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 87/148 (58%), Gaps = 7/148 (4%)

Query: 40  QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG------PAVTIGQ 93
           Q W    GI  Q A ID T  +E G IV   AV+GA+V IG+GT+VG      P V +G+
Sbjct: 111 QPWFGDDGISPQ-AIIDPTARLEDGVIVEPLAVIGAHVEIGAGTIVGAGAVIGPHVKVGR 169

Query: 94  STNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG 153
             N+G    +   +IG+  +IH G  IGQDG+GF         K PQ     I NHVE+G
Sbjct: 170 DCNVGARTVIQCSLIGNDVLIHPGCSIGQDGYGFIFFGANGHTKVPQTGRVIIQNHVEVG 229

Query: 154 ANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
           A + IDRGS RDTVIG+ +KIDN VQ+G
Sbjct: 230 AGTTIDRGSLRDTVIGEGTKIDNQVQIG 257

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Bradyrhizobium sp. (strain ORS278) (taxid: 114615)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q3SMZ4|LPXD2_NITWN UDP-3-O-acylglucosamine N-acyltransferase 2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=lpxD2 PE=3 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 86/132 (65%), Gaps = 3/132 (2%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIG 109
           H SA +   V I+ GA V   A +G   CIGS  V+GP+V IG++  IG NV ++  ++G
Sbjct: 123 HASAIVGHGVTIDPGASVGPNARIGGFTCIGSNAVIGPSVRIGRNCYIGANVTVAYAVVG 182

Query: 110 DSCIIHNGVCIGQDGFGF-FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168
           D  IIH G  IGQDGFGF F+   G  +K PQ+    I + VE+GAN+ IDRGS R TVI
Sbjct: 183 DRVIIHPGTSIGQDGFGFTFLG--GKWVKVPQVGGVIIQDDVEVGANTTIDRGSMRATVI 240

Query: 169 GDHSKIDNLVQV 180
           G+ +K+DNLVQV
Sbjct: 241 GEGTKLDNLVQV 252

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) (taxid: 323098)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q11IJ0|LPXD_MESSB UDP-3-O-acylglucosamine N-acyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=lpxD PE=3 SV=2

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 94/176 (53%), Gaps = 13/176 (7%)

Query: 12  LTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKA 71
           ++   +Q F     L   +++   R Q      G       A I    ++E GAI+ + A
Sbjct: 88  VSPKPQQAFAMVARLLFPEAN---RPQPVTGETG---VSPRAVIAEGAVVEDGAIIEAGA 141

Query: 72  VLGANVCIGSGTVVGPAVTIGQSTNIG------FNVALSNCIIGDSCIIHNGVCIGQDGF 125
           V+G    +G GT+VGP   IG   +IG       NV L   +IGD  IIH G  IGQDGF
Sbjct: 142 VIGVGASVGRGTIVGPNTVIGARCSIGRDGYVGPNVMLQYAVIGDRVIIHPGAQIGQDGF 201

Query: 126 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
           GF    +G   K PQ+    I + VEIGAN+ IDRG+  DT+IG+ +KIDNLVQ+G
Sbjct: 202 GFLPGPNG-FEKNPQIGRVIIQDDVEIGANTTIDRGALSDTIIGEGTKIDNLVQIG 256

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Mesorhizobium sp. (strain BNC1) (taxid: 266779)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|A6U8L0|LPXD_SINMW UDP-3-O-acylglucosamine N-acyltransferase OS=Sinorhizobium medicae (strain WSM419) GN=lpxD PE=3 SV=1

 Score =  114 bits (286), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/135 (48%), Positives = 85/135 (62%), Gaps = 6/135 (4%)

Query: 53  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGT------VVGPAVTIGQSTNIGFNVALSNC 106
           A +DST  +E G  V   AV+GA   IGSGT      ++GP V IG+   I   V++   
Sbjct: 123 AFVDSTARLEAGVEVEPMAVIGAGAEIGSGTRIAAGAMIGPGVRIGRDCTISAGVSILCA 182

Query: 107 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
           +IG++ IIH G  IGQDGFG+     G M+K  Q+    I +HVEIGAN+ IDRG+  DT
Sbjct: 183 LIGNNVIIHPGTRIGQDGFGYAPGPTGGMIKIVQVGRVIIQDHVEIGANTTIDRGTMDDT 242

Query: 167 VIGDHSKIDNLVQVG 181
           VIG+ +KIDNLVQ+G
Sbjct: 243 VIGEGTKIDNLVQIG 257

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Sinorhizobium medicae (strain WSM419) (taxid: 366394)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q2W4D3|LPXD_MAGSA UDP-3-O-acylglucosamine N-acyltransferase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=lpxD PE=3 SV=1

 Score =  113 bits (283), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 90/170 (52%), Gaps = 7/170 (4%)

Query: 12  LTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKA 71
           L+    + + R    F      E       W         SA +     IE GA++ + A
Sbjct: 88  LSPDPYRAYARIAQAFYPNPAPEPWVAPTAW------VDASAAVGEGCRIEPGAVIGAGA 141

Query: 72  VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE 131
            +GA   IG+  V+G  V +G    IG N  +S+ ++G    I+ G  IGQDGFGF +  
Sbjct: 142 RIGARCRIGANVVIGQGVVLGDDCTIGANATVSHALVGSRVNIYPGARIGQDGFGFAMGP 201

Query: 132 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
            G+ LK PQL    IGN+VEIGAN+ IDRG+  DTVIGD S IDNLVQ+G
Sbjct: 202 QGH-LKVPQLGRVLIGNNVEIGANTTIDRGAGPDTVIGDGSMIDNLVQIG 250

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q8UFL5|LPXD_AGRT5 UDP-3-O-acylglucosamine N-acyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=lpxD PE=3 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/137 (45%), Positives = 86/137 (62%), Gaps = 7/137 (5%)

Query: 51  QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN----- 105
            +A +D +  +E G IV   AV+GA V IG+GT +GP V IG    IG +  ++      
Sbjct: 122 PAAYVDPSAKLEPGVIVEPMAVIGAGVHIGAGTRIGPGVVIGSDVQIGRDCTIAGGASIL 181

Query: 106 -CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164
             ++G++ IIHNG  IGQDGFG+     G MLK  Q+    I +HVE+GAN+ IDRG+  
Sbjct: 182 AALLGNNVIIHNGARIGQDGFGYAPGPRG-MLKIVQIGRVIIQDHVEVGANTTIDRGTMD 240

Query: 165 DTVIGDHSKIDNLVQVG 181
           DTVIG+ +KIDN VQ+G
Sbjct: 241 DTVIGEGTKIDNQVQIG 257

Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
225444405	293	PREDICTED: UDP-3-O-[3-hydroxymyristoyl]	0.792	0.494	0.786	7e-65
302144058	289	unnamed protein product [Vitis vinifera]	0.792	0.501	0.786	8e-65
224078928	234	predicted protein [Populus trichocarpa]	0.792	0.619	0.793	2e-63
255555019	247	UDP-3-O-[3-hydroxymyristoyl] glucosamine	0.786	0.582	0.777	1e-61
356495807	312	PREDICTED: UDP-3-O-[3-hydroxymyristoyl]	0.863	0.506	0.712	3e-61
124359869	285	Trimeric LpxA-like [Medicago truncatula]	0.797	0.512	0.746	1e-57
297799948	303	bacterial transferase hexapeptide repeat	0.792	0.478	0.731	6e-57
42567003	304	trimeric LpxA-like protein [Arabidopsis	0.846	0.509	0.683	5e-56
449433924	285	PREDICTED: UDP-3-O-acylglucosamine N-acy	0.781	0.501	0.713	1e-55
357154632	288	PREDICTED: UDP-3-O-[3-hydroxymyristoyl]	0.928	0.590	0.588	1e-54

>gi|225444405|ref|XP_002265427.1| PREDICTED: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase-like [Vitis vinifera]

 Score =  251 bits (642), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 135/145 (93%)

Query: 37  QQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTN 96
           Q+FQKWHNGGG+FH++ACI+ST LIE+GA+VHS+ V+ ANV IGSGT+VGPAV IG+ST 
Sbjct: 60  QEFQKWHNGGGMFHKTACIESTTLIEIGAVVHSECVVAANVHIGSGTIVGPAVKIGESTK 119

Query: 97  IGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 156
           I +NV+++NC IGD+C IHNGVCIGQDGFGFFVDEHGNM+KK Q+L+ARIGNHVEIGAN+
Sbjct: 120 IEYNVSVTNCTIGDACFIHNGVCIGQDGFGFFVDEHGNMMKKAQMLSARIGNHVEIGANT 179

Query: 157 CIDRGSWRDTVIGDHSKIDNLVQVG 181
           CIDRGSWRDTVIGDHSKIDNLVQ+G
Sbjct: 180 CIDRGSWRDTVIGDHSKIDNLVQIG 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|302144058|emb|CBI23163.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (641), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 135/145 (93%)

Query: 37  QQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTN 96
           Q+FQKWHNGGG+FH++ACI+ST LIE+GA+VHS+ V+ ANV IGSGT+VGPAV IG+ST 
Sbjct: 56  QEFQKWHNGGGMFHKTACIESTTLIEIGAVVHSECVVAANVHIGSGTIVGPAVKIGESTK 115

Query: 97  IGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 156
           I +NV+++NC IGD+C IHNGVCIGQDGFGFFVDEHGNM+KK Q+L+ARIGNHVEIGAN+
Sbjct: 116 IEYNVSVTNCTIGDACFIHNGVCIGQDGFGFFVDEHGNMMKKAQMLSARIGNHVEIGANT 175

Query: 157 CIDRGSWRDTVIGDHSKIDNLVQVG 181
           CIDRGSWRDTVIGDHSKIDNLVQ+G
Sbjct: 176 CIDRGSWRDTVIGDHSKIDNLVQIG 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078928|ref|XP_002305684.1| predicted protein [Populus trichocarpa] gi|222848648|gb|EEE86195.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/145 (79%), Positives = 133/145 (91%)

Query: 37  QQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTN 96
           +++ KW+NGGG FH+SACID TVLIE+GA+VHSKAVLG NV +GSGTVVGP VTIG ST 
Sbjct: 1   EEYSKWNNGGGTFHKSACIDPTVLIEIGAVVHSKAVLGTNVHVGSGTVVGPEVTIGHSTK 60

Query: 97  IGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 156
           IG+NV LSNC IGDSC++H+GVCIGQDGFGFFVD+ GNM+KKPQLLNA IG+HVEIGAN+
Sbjct: 61  IGYNVGLSNCRIGDSCVVHHGVCIGQDGFGFFVDDKGNMMKKPQLLNAIIGDHVEIGANT 120

Query: 157 CIDRGSWRDTVIGDHSKIDNLVQVG 181
           CIDRGSWRDTVIGDHSK+DNLVQ+G
Sbjct: 121 CIDRGSWRDTVIGDHSKLDNLVQIG 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555019|ref|XP_002518547.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, putative [Ricinus communis] gi|223542392|gb|EEF43934.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, putative [Ricinus communis]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/144 (77%), Positives = 128/144 (88%)

Query: 38  QFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI 97
           +F KW NGGG+ H+S  ID T L+E+GA+VHSKA LGANV +GSG V+GP VT+GQST I
Sbjct: 14  EFSKWQNGGGVIHKSVHIDPTALVEIGAVVHSKAALGANVYVGSGAVIGPDVTVGQSTKI 73

Query: 98  GFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSC 157
           G+NV+L NC IGDSC+IHNGV IGQDGFGFFVDE G+M+KKPQLLNARIGNHVEIGAN+C
Sbjct: 74  GYNVSLRNCTIGDSCVIHNGVSIGQDGFGFFVDEQGSMVKKPQLLNARIGNHVEIGANTC 133

Query: 158 IDRGSWRDTVIGDHSKIDNLVQVG 181
           IDRGSWRDTVIGDHSKIDNLVQ+G
Sbjct: 134 IDRGSWRDTVIGDHSKIDNLVQIG 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

>gi|356495807|ref|XP_003516764.1| PREDICTED: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase-like [Glycine max]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/160 (71%), Positives = 135/160 (84%), Gaps = 2/160 (1%)

Query: 22  RFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGS 81
           R  + FS    +  +  F KWHNGGG  H+SA IDST L+EVGA+VHS++++G NV IGS
Sbjct: 36  RHLSAFSEDGSVADK--FHKWHNGGGTLHESASIDSTALVEVGAVVHSESIVGPNVRIGS 93

Query: 82  GTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQL 141
           GT+VGP+VTI  STNIG+NVALSNC IGDSC+IHNGVCIGQDGFGF+VD  GNM+KKPQ+
Sbjct: 94  GTIVGPSVTIAHSTNIGYNVALSNCCIGDSCVIHNGVCIGQDGFGFYVDGDGNMIKKPQM 153

Query: 142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
           LN  IGN+VEIGAN+CIDRGSWRDTVIGD+SKIDNLVQ+G
Sbjct: 154 LNVIIGNNVEIGANTCIDRGSWRDTVIGDNSKIDNLVQIG 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

>gi|124359869|gb|ABN06168.1| Trimeric LpxA-like [Medicago truncatula]

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/146 (74%), Positives = 128/146 (87%)

Query: 36  RQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST 95
             +F+KW NGGGIFH+SACIDST  ++VGAIVHS++V+G+NV I SGTVVGP+V+I  ST
Sbjct: 53  EDKFKKWKNGGGIFHESACIDSTAFLDVGAIVHSESVVGSNVRIASGTVVGPSVSIAHST 112

Query: 96  NIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGAN 155
            IGFNV+LSNC IGDSC+IHNGVCIGQDGFGF+VD  G+M+KKPQ LN  IGN VEIGAN
Sbjct: 113 IIGFNVSLSNCSIGDSCVIHNGVCIGQDGFGFYVDGDGHMIKKPQKLNVIIGNGVEIGAN 172

Query: 156 SCIDRGSWRDTVIGDHSKIDNLVQVG 181
           +CIDRGSWRDT IGD+SKIDNLVQ+G
Sbjct: 173 TCIDRGSWRDTFIGDNSKIDNLVQIG 198

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799948|ref|XP_002867858.1| bacterial transferase hexapeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297313694|gb|EFH44117.1| bacterial transferase hexapeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  225 bits (574), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 123/145 (84%)

Query: 37  QQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTN 96
           + F +W NGGG  H SA IDS+ L+E GA+VH KAVLGA V +GSGTV+GP+V I  ST 
Sbjct: 70  EGFLRWRNGGGTCHSSALIDSSALVEFGAVVHEKAVLGAEVHVGSGTVIGPSVQISPSTR 129

Query: 97  IGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 156
           IG+NV+LSNC IGDSC+IHNGVCIGQDGFGF+VDEHGNM+KKPQ LN +IGN VEIGAN+
Sbjct: 130 IGYNVSLSNCSIGDSCVIHNGVCIGQDGFGFYVDEHGNMVKKPQKLNVKIGNRVEIGANT 189

Query: 157 CIDRGSWRDTVIGDHSKIDNLVQVG 181
           CIDRGSWRDTVI D +KIDNLVQ+G
Sbjct: 190 CIDRGSWRDTVIEDDTKIDNLVQIG 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567003|ref|NP_193854.2| trimeric LpxA-like protein [Arabidopsis thaliana] gi|332659029|gb|AEE84429.1| trimeric LpxA-like protein [Arabidopsis thaliana]

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 126/155 (81%)

Query: 27  FSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG 86
             T   I  ++ F +W NGGG  H SA I S+ L+E GA+VH KAVLGA V +GSGTV+G
Sbjct: 61  LKTGGGIIVKEGFLRWENGGGTCHSSAQIYSSALVEFGAVVHEKAVLGAEVHVGSGTVIG 120

Query: 87  PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARI 146
           P+V IG ST IG+NV++SNC IGDSC+IHNGVCIGQDGFGF+VDEHGNM+KKPQ LN +I
Sbjct: 121 PSVDIGPSTRIGYNVSISNCSIGDSCVIHNGVCIGQDGFGFYVDEHGNMVKKPQTLNVKI 180

Query: 147 GNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
           GN VEIGAN+CIDRGSWR+TVI D +KIDNLVQ+G
Sbjct: 181 GNRVEIGANTCIDRGSWRETVIEDDTKIDNLVQIG 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433924|ref|XP_004134746.1| PREDICTED: UDP-3-O-acylglucosamine N-acyltransferase-like [Cucumis sativus] gi|449530480|ref|XP_004172223.1| PREDICTED: UDP-3-O-acylglucosamine N-acyltransferase-like [Cucumis sativus]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/143 (71%), Positives = 125/143 (87%)

Query: 39  FQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIG 98
           F+ WHNGGG FH SA ID T ++E+GA+VHS +V+G +V IGSG+V+G AVTIGQST IG
Sbjct: 55  FRTWHNGGGTFHHSASIDPTAVVEIGAVVHSNSVVGPSVHIGSGSVIGHAVTIGQSTKIG 114

Query: 99  FNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158
           FNVALSNC +GD C+IHNGVC+GQDGFGFFVDE G M KKPQ+LN +IG +VEIG+N+CI
Sbjct: 115 FNVALSNCNVGDFCVIHNGVCVGQDGFGFFVDEQGTMKKKPQMLNVKIGMNVEIGSNTCI 174

Query: 159 DRGSWRDTVIGDHSKIDNLVQVG 181
           DRGSWRDT+IG+++KIDNLVQ+G
Sbjct: 175 DRGSWRDTIIGNNTKIDNLVQIG 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357154632|ref|XP_003576848.1| PREDICTED: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase-like [Brachypodium distachyon]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/175 (58%), Positives = 132/175 (75%), Gaps = 5/175 (2%)

Query: 12  LTKTYKQD-FGRF----CNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAI 66
           L +T   D   RF     +  S  + I+S  +F  W NGGG+ H++A +D T ++E GA+
Sbjct: 22  LPRTRSADRLARFLGSGVSATSCDAGIDSAAEFVPWRNGGGVMHRAASVDPTAVVEAGAV 81

Query: 67  VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG 126
           VHS AVLG  V +GSGTV+GP+V++G ST IG+NV LSNC +G+ C IHNG C+GQDGFG
Sbjct: 82  VHSGAVLGKEVVVGSGTVIGPSVSVGHSTRIGYNVVLSNCSVGEFCTIHNGACVGQDGFG 141

Query: 127 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
           FFVDE G + KKPQ+L ARIG++VEIGAN+CIDRGSWRDT+IGD +KIDNLVQ+G
Sbjct: 142 FFVDEDGQIKKKPQVLYARIGDNVEIGANTCIDRGSWRDTLIGDDTKIDNLVQIG 196

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2127423	304	LpxD2 "lipid X D2" [Arabidopsi	0.836	0.503	0.692	1.6e-56
TIGR_CMR|SO_1639	341	SO_1639 "UDP-3-O-(3-hydroxymyr	0.699	0.375	0.469	4.8e-23
TIGR_CMR|CBU_0613	342	CBU_0613 "UDP-3-O-[3-hydroxymy	0.732	0.391	0.415	1.1e-21
UNIPROTKB|Q9KPW2	351	lpxD "UDP-3-O-acylglucosamine	0.721	0.376	0.410	1.5e-21
TIGR_CMR|VC_2250	351	VC_2250 "UDP-3-O-3-hydroxymyri	0.721	0.376	0.410	1.5e-21
UNIPROTKB|P21645	341	lpxD [Escherichia coli K-12 (t	0.721	0.387	0.395	9.2e-20
TIGR_CMR|GSU_2266	347	GSU_2266 "UDP-3-O-3-hydroxymyr	0.683	0.360	0.409	5.7e-19
TIGR_CMR|CPS_1563	349	CPS_1563 "UDP-3-O-[3-hydroxymy	0.726	0.381	0.401	1e-16
TIGR_CMR|CJE_0679	321	CJE_0679 "UDP-3-O-(R-3-hydroxy	0.595	0.339	0.372	5.4e-12
TIGR_CMR|SPO_1930	363	SPO_1930 "UDP-3-O-3-hydroxymyr	0.661	0.333	0.320	2.5e-08

TAIR|locus:2127423 LpxD2 "lipid X D2" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 106/153 (69%), Positives = 126/153 (82%)

Query:    29 TKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA 88
             T   I  ++ F +W NGGG  H SA I S+ L+E GA+VH KAVLGA V +GSGTV+GP+
Sbjct:    63 TGGGIIVKEGFLRWENGGGTCHSSAQIYSSALVEFGAVVHEKAVLGAEVHVGSGTVIGPS 122

Query:    89 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN 148
             V IG ST IG+NV++SNC IGDSC+IHNGVCIGQDGFGF+VDEHGNM+KKPQ LN +IGN
Sbjct:   123 VDIGPSTRIGYNVSISNCSIGDSCVIHNGVCIGQDGFGFYVDEHGNMVKKPQTLNVKIGN 182

Query:   149 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
              VEIGAN+CIDRGSWR+TVI D +KIDNLVQ+G
Sbjct:   183 RVEIGANTCIDRGSWRETVIEDDTKIDNLVQIG 215

GO:0005737 "cytoplasm" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0043764 "UDP-3-O-[3-hydroxymyristoyl

GO:2001289 "lipid X metabolic process" evidence=IMP

TIGR_CMR|SO_1639 SO_1639 "UDP-3-O-(3-hydroxymyristoyl) glucosamine n-acyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 61/130 (46%), Positives = 78/130 (60%)

Query:    52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGD 110
             SA +   V I   A++ +  +LG NV IG+GTV+G    IG +T +  NV L  N  +G 
Sbjct:   109 SAQLGDGVAIGANAVIGANVILGENVQIGAGTVIGQDSIIGSNTRLWANVTLYHNVHLGQ 168

Query:   111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGD 170
              CIIH+G  IG DGFG+  +E G  +K PQ    RIG+ VEIGANS IDRG+   T I +
Sbjct:   169 DCIIHSGAIIGSDGFGY-ANERGQWIKIPQTGGVRIGDRVEIGANSTIDRGALGHTEIHN 227

Query:   171 HSKIDNLVQV 180
                IDN VQV
Sbjct:   228 GVIIDNQVQV 237

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CBU_0613 CBU_0613 "UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 59/142 (41%), Positives = 84/142 (59%)

Query:    46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN 105
             GGI H +A + +   I+  A + +  V+  +V IG  T++G   +IG+ + IG +  L +
Sbjct:   101 GGI-HPTAVVGANCQIDPSAHIGAHVVIEEDVVIGPRTLIGAGASIGRGSQIGSDCCLHS 159

Query:   106 CI-------IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158
              +       IGD  IIH+G  IG DGFG   DE G  +K PQ+    IG+ VEIGAN+ I
Sbjct:   160 RVTLYSQTRIGDRSIIHSGAVIGADGFGLIQDEKGEWVKIPQVGRVIIGDDVEIGANATI 219

Query:   159 DRGSWRDTVIGDHSKIDNLVQV 180
             DRG+  DTVIG+  KID+LV +
Sbjct:   220 DRGALDDTVIGNGVKIDDLVMI 241

GO:0009245 "lipid A biosynthetic process" evidence=ISS

UNIPROTKB|Q9KPW2 lpxD "UDP-3-O-acylglucosamine N-acyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 55/134 (41%), Positives = 80/134 (59%)

Query:    48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
             +  + A +   V I   A++ S   LG NV IG+G  +G    +G +T +  NV + + +
Sbjct:   105 VIAEDAKLGHNVSIGANAVIESGVQLGDNVVIGAGCFIGKQARLGDNTKLWANVTIYHKV 164

Query:   108 -IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
              IG  C+I +G  IG DGFG+  +E G  +K PQL + RIG+ VEIGA + IDRG+  DT
Sbjct:   165 EIGSDCLIQSGTVIGADGFGY-ANERGEWIKIPQLGSVRIGDRVEIGACTTIDRGALDDT 223

Query:   167 VIGDHSKIDNLVQV 180
             VI D+  IDN +Q+
Sbjct:   224 VIEDNVIIDNQLQI 237

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|VC_2250 VC_2250 "UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 55/134 (41%), Positives = 80/134 (59%)

Query:    48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
             +  + A +   V I   A++ S   LG NV IG+G  +G    +G +T +  NV + + +
Sbjct:   105 VIAEDAKLGHNVSIGANAVIESGVQLGDNVVIGAGCFIGKQARLGDNTKLWANVTIYHKV 164

Query:   108 -IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
              IG  C+I +G  IG DGFG+  +E G  +K PQL + RIG+ VEIGA + IDRG+  DT
Sbjct:   165 EIGSDCLIQSGTVIGADGFGY-ANERGEWIKIPQLGSVRIGDRVEIGACTTIDRGALDDT 223

Query:   167 VIGDHSKIDNLVQV 180
             VI D+  IDN +Q+
Sbjct:   224 VIEDNVIIDNQLQI 237

GO:0009245 "lipid A biosynthetic process" evidence=ISS

UNIPROTKB|P21645 lpxD [Escherichia coli K-12 (taxid:83333)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 53/134 (39%), Positives = 79/134 (58%)

Query:    48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
             +   +A + + V I   A++ S   LG NV IG+G  VG    IG  + +  NV + + I
Sbjct:   105 VIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEI 164

Query:   108 -IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
              IG +C+I +G  +G DGFG+  ++ GN +K PQ+    IG+ VEIGA + IDRG+  DT
Sbjct:   165 QIGQNCLIQSGTVVGADGFGY-ANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDT 223

Query:   167 VIGDHSKIDNLVQV 180
             +IG+   IDN  Q+
Sbjct:   224 IIGNGVIIDNQCQI 237

GO:0016410 "N-acyltransferase activity" evidence=IDA

GO:0009245 "lipid A biosynthetic process" evidence=IEA;IMP

GO:0046677 "response to antibiotic" evidence=IEA

TIGR_CMR|GSU_2266 GSU_2266 "UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 228 (85.3 bits), Expect = 5.7e-19, P = 5.7e-19
 Identities = 52/127 (40%), Positives = 69/127 (54%)

Query:    55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCI 113
             + S + I  GA+V     +G  V +  G V+   VT+G    +  NV +   C IG+   
Sbjct:   112 LGSEITIHPGAVVGDNVTIGDRVTLHPGVVLYEGVTVGDDVTLHANVTVYQGCRIGNRVT 171

Query:   114 IHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSK 173
             IH G  IG DGFG+  D  G   K PQL N  I + VEIGAN+ IDR +   TVIG  +K
Sbjct:   172 IHGGTIIGSDGFGYAPDGDG-WYKIPQLGNVVIEDDVEIGANAAIDRAALASTVIGKGTK 230

Query:   174 IDNLVQV 180
             +DNLV +
Sbjct:   231 VDNLVMI 237

GO:0009245 "lipid A biosynthetic process" evidence=ISS

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=ISS

TIGR_CMR|CPS_1563 CPS_1563 "UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 209 (78.6 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 57/142 (40%), Positives = 79/142 (55%)

Query:    47 GIFHQSACIDSTVLI----EVGA--IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN 100
             GI H +A I   VLI     VGA  ++ S   L  NV IG+G  +G    IG+ST +  N
Sbjct:   106 GI-HPNAVIADDVLIGENVSVGANTVIESGVQLADNVSIGAGCFIGHGAKIGESTILWAN 164

Query:   101 VALSNCI-IGDSCIIHNGVCIGQDGFGFF-VDEHGNMLKKPQLLNARIGNHVEIGANSCI 158
             + + + + IG  C+I     IG DGFG+  V       K PQL +  IG+HVEIGA++ I
Sbjct:   165 ITIYHRVEIGHHCLIQASTVIGSDGFGYAPVKGQYKWHKIPQLGSVIIGDHVEIGASTTI 224

Query:   159 DRGSWRDTVIGDHSKIDNLVQV 180
             DRG+  +T I D   +DN +Q+
Sbjct:   225 DRGALDNTEIRDGVILDNQIQI 246

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CJE_0679 CJE_0679 "UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 166 (63.5 bits), Expect = 5.4e-12, P = 5.4e-12
 Identities = 41/110 (37%), Positives = 61/110 (55%)

Query:    73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI-IGDSCIIHNGVCIGQDGFGFFVDE 131
             +G NV I +G  +G  V+IG  + I  NV + N   IG  C +     IG DGFG+  ++
Sbjct:   121 IGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKKCHLLANCVIGSDGFGYAHNK 180

Query:   132 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
             +G   K     N  + + VE+GA + IDR  +  T+I   +K+DNLVQ+G
Sbjct:   181 NGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIKAGTKVDNLVQIG 230

GO:0009245 "lipid A biosynthetic process" evidence=ISS

GO:0016410 "N-acyltransferase activity" evidence=ISS

TIGR_CMR|SPO_1930 SPO_1930 "UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 134 (52.2 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 41/128 (32%), Positives = 60/128 (46%)

Query:    61 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN-VALSNCIIG-DSCIIHNGV 118
             I  G+++    V+G +  +G G  +   V+IG    IG   +A     IG D        
Sbjct:   131 IGAGSVIGPHCVIGMDAVLGEGAWLREMVSIGARATIGARFIAQPGARIGGDGFSFVTPE 190

Query:   119 CIGQDGFGFFVDEHGNMLKKP----QLLNA-RIGNHVEIGANSCIDRGSWRDTVIGDHSK 173
               G +     + + G    +       L A  IG+ VE+GAN  +D G+ R+T IGD SK
Sbjct:   191 VSGAENARKTMGDQGEAKAQAWTRIHSLGAVEIGDDVEVGANCTVDNGTIRNTCIGDGSK 250

Query:   174 IDNLVQVG 181
             +DNLV VG
Sbjct:   251 LDNLVHVG 258

GO:0009245 "lipid A biosynthetic process" evidence=ISS

GO:0016410 "N-acyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	9e-51
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	5e-46
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	2e-40
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	6e-38
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	9e-12
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	1e-10
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	6e-09
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	2e-08
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	3e-08
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	1e-07
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	2e-07
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	3e-07
cd03354	101	cd03354, LbH_SAT, Serine acetyltransferase (SAT):	5e-07
COG1045	194	COG1045, CysE, Serine acetyltransferase [Amino aci	7e-07
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	1e-06
TIGR02091	361	TIGR02091, glgC, glucose-1-phosphate adenylyltrans	1e-06
COG2171	271	COG2171, DapD, Tetrahydrodipicolinate N-succinyltr	2e-06
cd00710	167	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (	2e-06
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	2e-06
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	3e-06
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	3e-06
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	5e-06
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	5e-06
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	7e-06
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	1e-05
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	1e-05
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	1e-05
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	2e-05
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	3e-05
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	3e-05
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	4e-05
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	7e-05
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	1e-04
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	1e-04
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	2e-04
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	2e-04
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	2e-04
PRK14352	482	PRK14352, glmU, bifunctional N-acetylglucosamine-1	2e-04
cd03359	161	cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p2	2e-04
cd00710	167	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (	5e-04
cd04745	155	cd04745, LbH_paaY_like, paaY-like: This group is c	7e-04
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	0.001
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	0.001
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	0.001
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	0.001
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	0.001
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	0.001
TIGR03532	231	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6	0.001
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	0.002
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	0.002
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	0.003
PRK13627	196	PRK13627, PRK13627, carnitine operon protein CaiE;	0.003
cd03350	139	cd03350, LbH_THP_succinylT, 2,3,4,5-tetrahydropyri	0.004

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score =  166 bits (422), Expect = 9e-51
 Identities = 61/133 (45%), Positives = 79/133 (59%), Gaps = 2/133 (1%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 108
             SA I   V I   A++ +  V+G  V IG+G V+G  V IG    +  NV +     I
Sbjct: 110 DPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRI 169

Query: 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168
           G+  IIH+G  IG DGFGF  ++ G  +K PQL    IG+ VEIGAN+ IDRG+  DTVI
Sbjct: 170 GNRVIIHSGAVIGSDGFGF-ANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVI 228

Query: 169 GDHSKIDNLVQVG 181
           G+  KIDNLVQ+ 
Sbjct: 229 GEGVKIDNLVQIA 241

Length = 343

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score =  149 bits (380), Expect = 5e-46
 Identities = 66/131 (50%), Positives = 79/131 (60%), Gaps = 2/131 (1%)

Query: 52  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGD 110
           SA I   V I   A++    V+G  V IG G V+G  V IG    I  NV +   CIIGD
Sbjct: 1   SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60

Query: 111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGD 170
             IIH+G  IG DGFGF   + G  +K PQL    IG+ VEIGAN+ IDRG+  DTVIGD
Sbjct: 61  RVIIHSGAVIGSDGFGF-APDGGGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGD 119

Query: 171 HSKIDNLVQVG 181
            +KIDNLVQ+ 
Sbjct: 120 GTKIDNLVQIA 130

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score =  138 bits (351), Expect = 2e-40
 Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 1/133 (0%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 108
             SA I   V I    ++ +   +G NV IG G V+G  V IG  + I  NV +     +
Sbjct: 101 DPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQL 160

Query: 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168
           G + IIH+G  IG DGFG+    +G  +K PQ+    I + VEIGAN+ IDRG++ DT+I
Sbjct: 161 GKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTII 220

Query: 169 GDHSKIDNLVQVG 181
           G+ +KIDNLVQ+ 
Sbjct: 221 GEGTKIDNLVQIA 233

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score =  132 bits (334), Expect = 6e-38
 Identities = 62/136 (45%), Positives = 83/136 (61%), Gaps = 2/136 (1%)

Query: 47  GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SN 105
            +   +A I   V I    ++ +  V+G NV IG+G V+G  V IG  T I  NV +  N
Sbjct: 106 AVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHN 165

Query: 106 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 165
            +IG++ IIH+G  IG DGFG+     G  +K PQ+    IG+ VEIGAN+ IDRG+  D
Sbjct: 166 VVIGNNVIIHSGAVIGADGFGYAGTAIG-WVKIPQIGRVIIGDDVEIGANTTIDRGALDD 224

Query: 166 TVIGDHSKIDNLVQVG 181
           TVIG+  KIDNLVQ+G
Sbjct: 225 TVIGEGVKIDNLVQIG 240

Length = 338

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 61.3 bits (150), Expect = 9e-12
 Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 26/118 (22%)

Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD 123
           AIV   A +G NV IG   V+GP V IG  T IG +V +  +  IG +  I     IG+D
Sbjct: 9   AIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGED 68

Query: 124 GFGFFVDEHGNMLKKPQLLNAR-------IGNHVEIGANSCIDRGSWRD---TVIGDH 171
                          PQ L  +       IG++  I     I+RG+ +    T IGD+
Sbjct: 69  ---------------PQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDN 111

Length = 262

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 26/118 (22%)

Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD 123
           AIV   A +G NV IG   V+GP V IG  T IG +V +     IG +  I     IG+ 
Sbjct: 6   AIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEA 65

Query: 124 GFGFFVDEHGNMLKKPQLLNAR-------IGNHVEIGANSCIDRGSWRD---TVIGDH 171
                          PQ L  +       IG++  I     I RG+ +    T IG++
Sbjct: 66  ---------------PQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNN 108

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 42/174 (24%), Positives = 63/174 (36%), Gaps = 37/174 (21%)

Query: 1   MAVKRFVHYYRLTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVL 60
            A    V+ Y   + Y  D G   +L      +          +  G   +   I  +  
Sbjct: 203 AAKGEDVYGYV-FEGYWLDIGTPEDLLEANELLLRG----DGKSPLGPIEEPVVIIRSAY 257

Query: 61  IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 120
           I    ++   A +G    IG  TV+G  VTIG    I       N II D+ +I +G  I
Sbjct: 258 IIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEI------KNSIIMDNVVIGHGSYI 311

Query: 121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
           G                     ++ IG + +IGA+  I      D VIG +S+I
Sbjct: 312 G---------------------DSIIGENCKIGASLII-----GDVVIGINSEI 339

Length = 358

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 26/127 (20%)

Query: 56  DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCII 114
                I   AI+   A +G +V IG   ++GP V IG  T +  +V +  +  IG +  I
Sbjct: 1   MKMAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRI 60

Query: 115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNAR-------IGNHVEIGANSCIDRGSWRD-- 165
                IG+D               PQ L  +       IG++  I     I RG+ +   
Sbjct: 61  FPFASIGED---------------PQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGG 105

Query: 166 -TVIGDH 171
            T IGD+
Sbjct: 106 VTRIGDN 112

Length = 260

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 23/132 (17%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIG----------- 98
           H +A ID +  +  G  +   AV+GANV IG GT +GP   I   T IG           
Sbjct: 3   HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVV 62

Query: 99  --------FNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN----MLKKPQLLNARI 146
                   +    S   IGD  +I  GV I +   G  V   GN    M       + +I
Sbjct: 63  GDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQI 122

Query: 147 GNHVEIGANSCI 158
           GN+V +   + +
Sbjct: 123 GNNVILVNGALL 134

Length = 255

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 33/117 (28%)

Query: 66  IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------NCIIGDSCIIHNGV 118
           ++H  AV+  +  IG G V+     I     IG NV ++       +C+IGD   I  GV
Sbjct: 86  LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGV 145

Query: 119 CIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV-IGDHSKI 174
            +   G                     IG    IGA + I        V IG  + I
Sbjct: 146 VLS--G------------------GVTIGEGAFIGAGATI-----IQGVTIGAGAII 177

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 37/128 (28%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
           + H SA +  +  I  G ++ + AV+  +V IG   ++     +             +C+
Sbjct: 80  LIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEH-----------DCV 128

Query: 108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 167
           IGD   I  GV +   G                     IG  V IGA + I        V
Sbjct: 129 IGDYVHIAPGVTLS--G------------------GVVIGEGVFIGAGATI-----IQGV 163

Query: 168 -IGDHSKI 174
            IG  + +
Sbjct: 164 TIGAGAVV 171

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 32/141 (22%)

Query: 32  DIESRQQFQKWHNGGG-----IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIG------ 80
           D + R++  +     G     + H SA +  + +I  G ++ + AV+  +  IG      
Sbjct: 65  DNKLRRKLAEKLLAAGYRFATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIIN 124

Query: 81  SGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKP 139
           +G V+G    IG   +I   V LS    IG+   I  G  I                   
Sbjct: 125 TGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI-----------------IQ 167

Query: 140 QLLNARIGNHVEIGANSCIDR 160
            +    IG    IGA + + +
Sbjct: 168 GV---TIGAGAIIGAGAVVTK 185

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

 Score = 45.9 bits (110), Expect = 5e-07
 Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 19/96 (19%)

Query: 79  IGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138
           I  G  +GP + I   T I   V     +IGD+C I+ GV +G  G G     H      
Sbjct: 5   IHPGAKIGPGLFIDHGTGI---VIGETAVIGDNCTIYQGVTLGGKGKG-GGKRH------ 54

Query: 139 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
                  IG++V IGA + I  G   +  IGD+ KI
Sbjct: 55  -----PTIGDNVVIGAGAKI-LG---NITIGDNVKI 81

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101

>gnl|CDD|223975 COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 19/96 (19%)

Query: 79  IGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138
           I  G  +G  + I   T +   V     +IGD   I++GV +G  G       H      
Sbjct: 70  IHPGAKIGRGLFIDHGTGV---VIGETAVIGDDVTIYHGVTLGGTG-KESGKRH------ 119

Query: 139 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
                  IGN V IGA + I      +  IGD++KI
Sbjct: 120 -----PTIGNGVYIGAGAKI----LGNIEIGDNAKI 146

Length = 194

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 26/118 (22%)

Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD 123
           AI+   A +G NV IG   +VGP V IG    +  +V +  +  IG+   I  G  IG  
Sbjct: 5   AIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGV 64

Query: 124 GFGFFVDEHGNMLKKPQLLN-------ARIGNHVEIGANSCIDRGSWRD---TVIGDH 171
                          PQ L          IG++  I     I+RG+      T IG++
Sbjct: 65  ---------------PQDLKYKGEKTRLIIGDNNTIREFVTINRGTASGGGVTRIGNN 107

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 48  IFHQSACIDSTVLIEVGAIVH----SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL 103
                A +  +++ E G I+     S +VLG  V IGSG+ V  +V +G    IG    +
Sbjct: 285 FVDSDAQVVDSLVSE-GCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVG-IGRGAVI 342

Query: 104 SNCIIGDSCIIHNGVCIG 121
            N II  +  I  GV IG
Sbjct: 343 RNAIIDKNVRIGEGVVIG 360

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361

>gnl|CDD|225082 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 53  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG--------PAVTIGQSTNIGFN-VAL 103
           A      +++  A V S A +G N  IG G  +G          V IG +  IG N   +
Sbjct: 139 AGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVV 198

Query: 104 SNCIIGDSCIIHNGVCIGQD 123
              I+GD C++  GV I QD
Sbjct: 199 EGVIVGDGCVVAAGVFITQD 218

Length = 271

>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)

Query: 55  IDSTVLIEVGAIVHSKA----VLGANVCIGSGTVV-GPAVTIGQSTNIGFNVALSNCIIG 109
           I + V I+ G ++H+       +G NV I  G +V GPA  IG +  IGF   + N  +G
Sbjct: 45  IGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPA-YIGDNCFIGFRSVVFNAKVG 103

Query: 110 DSCII-HNGVCIGQDGF-GFFV 129
           D+C+I HN V  G +   G +V
Sbjct: 104 DNCVIGHNAVVDGVEIPPGRYV 125

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 64  GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 123
           G + +S  VL   V IG G+V+  +V I     IG    L   II  + +I  GV IG D
Sbjct: 307 GTVENS--VLFRGVRIGKGSVIENSV-IMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363

Length = 393

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 31/122 (25%)

Query: 58  TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNG 117
           T  I+ G ++     +   VCI   T +G   TI Q       V +  C IGD   +  G
Sbjct: 262 TTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQ------GVVIKGCRIGDDVTVKAG 315

Query: 118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL 177
                                  L ++ +G+ V IG  + +  G    T +  H KI N 
Sbjct: 316 SV---------------------LEDSVVGDDVAIGPMAHLRPG----TELSAHVKIGNF 350

Query: 178 VQ 179
           V+
Sbjct: 351 VE 352

Length = 459

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 33/127 (25%)

Query: 55  ID-STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCI 113
           ID  +  I+    + S  V+   V I   TV+G    IG  + I       +  IGD   
Sbjct: 255 IDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRI------VDSTIGDGVT 308

Query: 114 IHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSK 173
           I N V                      +  +++G++V +G  + +  GS    VIG+  K
Sbjct: 309 ITNSV----------------------IEESKVGDNVTVGPFAHLRPGS----VIGEEVK 342

Query: 174 IDNLVQV 180
           I N V++
Sbjct: 343 IGNFVEI 349

Length = 458

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 41/151 (27%), Positives = 56/151 (37%), Gaps = 39/151 (25%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP------AVTIGQSTNIGFNVALSNCII 108
           I   V I  GAIV S A +   V IG G  +GP         +G    +G +V + N II
Sbjct: 14  IKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSII 73

Query: 109 ------------GDSCIIHNGVCIGQ---------DGFGFFVDEHGNM----LKKPQLLN 143
                       GDS ++   V +G          D     V   G       +K   L 
Sbjct: 74  MDGTKVPHLNYVGDS-VLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRK---LG 129

Query: 144 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
           A IG+ V+ G N  ++ G      IG  S +
Sbjct: 130 AIIGDGVKTGINVSLNPG----VKIGPGSWV 156

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 43.2 bits (103), Expect = 5e-06
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 61  IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 120
           I  G + +S  VL   V +GSG+VV  +V I  +  IG N  +   II  + +I +GV I
Sbjct: 21  ISGGTVENS--VLFRGVRVGSGSVVEDSV-IMPNVGIGRNAVIRRAIIDKNVVIPDGVVI 77

Query: 121 G----QDGFGFFVDEHG 133
           G    +D   F+V E G
Sbjct: 78  GGDPEEDRARFYVTEDG 94

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 36/127 (28%), Positives = 49/127 (38%), Gaps = 31/127 (24%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVT---IGQSTNIGFNVALSNCII--- 108
           ID T  +   A V     +GA V I  G V+   V    IG  TNI         +I   
Sbjct: 14  IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNI-----QDGVVIHAD 68

Query: 109 -GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 167
            G    I + V IG          HG ++         IG++V IG  + +  G+    V
Sbjct: 69  PGYPVTIGDDVTIG----------HGAVVH-----GCTIGDNVLIGMGATVLDGA----V 109

Query: 168 IGDHSKI 174
           IGD S +
Sbjct: 110 IGDGSIV 116

Length = 176

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 13/86 (15%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI---------- 97
           I    A I   V I    ++    V+G    IGS  V+    TIG++  I          
Sbjct: 10  IVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDP 69

Query: 98  ---GFNVALSNCIIGDSCIIHNGVCI 120
               +    +  +IGD+  I   V I
Sbjct: 70  QDLKYKGEPTRLVIGDNNTIREFVTI 95

Length = 262

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 21/127 (16%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           ID+ V I    ++    V+  N  IG   V+GP   I  ST IG  V ++N +I +S  +
Sbjct: 262 IDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDST-IGDGVTITNSVIEES-KV 319

Query: 115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
            + V +G     F     G+++ +      +IGN VEI           + + IG+ +K+
Sbjct: 320 GDNVTVGP----FAHLRPGSVIGE----EVKIGNFVEI-----------KKSTIGEGTKV 360

Query: 175 DNLVQVG 181
            +L  +G
Sbjct: 361 SHLTYIG 367

Length = 458

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 37/126 (29%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           ID  V I V  ++    +L     IG   V+GP   I             +  IGD  +I
Sbjct: 12  IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIK------------DSTIGDGVVI 59

Query: 115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
                I                       A IGN   +G  + +  G    TV+G+   I
Sbjct: 60  KASSVIE---------------------GAVIGNGATVGPFAHLRPG----TVLGEGVHI 94

Query: 175 DNLVQV 180
            N V++
Sbjct: 95  GNFVEI 100

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 40/155 (25%), Positives = 57/155 (36%), Gaps = 43/155 (27%)

Query: 53  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP------AVTIGQSTNIGFNVALSNC 106
             I   V+I  GA++ S   +   V IG    +GP         IG + +IG  V + N 
Sbjct: 243 VTIKGPVVIGEGAVIRSGTYIEGPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNS 302

Query: 107 II------------GDSCIIHNGVCIGQDGFGF--------FVDEHGNMLKKPQL----- 141
           II            GDS I  N  C     FG           D+   +  K +      
Sbjct: 303 IIMEGTKIPHLSYVGDSVIGEN--C----NFGAGTKVANLRHDDKPVKVTVKGKRVDTGR 356

Query: 142 --LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
             L A +G+ V+ G N  I+ G      IG  ++I
Sbjct: 357 RKLGAIVGDGVKTGINVSINPG----VKIGSGARI 387

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 28/103 (27%), Positives = 36/103 (34%), Gaps = 27/103 (26%)

Query: 79  IGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138
           IG G  + P   I               +IGD+  I  G  IG            N    
Sbjct: 3   IGEGVKIHPKAVIR-----------GPVVIGDNVNIGPGAVIGAAT-------GPNEKNP 44

Query: 139 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
                  IG++VEIGAN+ I  G      IGD++ I     V 
Sbjct: 45  TI-----IGDNVEIGANAVIHGG----VKIGDNAVIGAGAVVT 78

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 19/96 (19%)

Query: 64  GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 123
           G + HS  VL   V +G G+VV  +V I     IG NV +   IIG++ +I +GV IG  
Sbjct: 304 GTVEHS--VLFQGVQVGEGSVVKDSV-IMPGAKIGENVVIERAIIGENAVIGDGVIIGGG 360

Query: 124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID 159
                V                IG +  IG  + I 
Sbjct: 361 KEVITV----------------IGENEVIGVGTVIG 380

Length = 380

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 32/130 (24%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           I   V I+   I+  K  +G +V IG G V+  +V IG +  I     L    IG+ C +
Sbjct: 264 IGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSV-IGSNVVIKAYSVLEGSEIGEGCDV 322

Query: 115 HNGVCIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH 171
                      G F       G++L         IGN VE            ++  IG  
Sbjct: 323 -----------GPFA--RLRPGSVLGA----GVHIGNFVET-----------KNARIGKG 354

Query: 172 SKIDNLVQVG 181
           SK  +L  +G
Sbjct: 355 SKAGHLSYLG 364

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 40.9 bits (97), Expect = 7e-05
 Identities = 34/126 (26%), Positives = 47/126 (37%), Gaps = 33/126 (26%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTV----VGPAVTIGQSTNIGFNVALSNCII-- 108
           ID +  I   A V     LG    +  G V    V P + IG+ TNI         ++  
Sbjct: 2   IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNP-IRIGERTNIQ-----DGSVLHV 55

Query: 109 --GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
             G   II + V +G          HG +L         IG++  IG  + I  G+    
Sbjct: 56  DPGYPTIIGDNVTVG----------HGAVLH-----GCTIGDNCLIGMGAIILDGA---- 96

Query: 167 VIGDHS 172
           VIG  S
Sbjct: 97  VIGKGS 102

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 40/143 (27%)

Query: 40  QKWHNGGGIFHQ--SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI 97
           +KW   G  F    S  I  TV +    I+  +  L  N  IGSG  +GP   I +++ I
Sbjct: 242 EKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLI-ENSQI 300

Query: 98  GFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSC 157
           G NV +   ++ DS                                 +IG+ V+IG  + 
Sbjct: 301 GENVTVLYSVVSDS---------------------------------QIGDGVKIGPYAH 327

Query: 158 IDRGSWRDTVIGDHSKIDNLVQV 180
           + R    +  IG + +I N V++
Sbjct: 328 L-RP---EAQIGSNCRIGNFVEI 346

Length = 450

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 35/147 (23%), Positives = 51/147 (34%), Gaps = 32/147 (21%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP-----AVTIGQSTNIGFNVALSNCIIG 109
           I   V I    ++    +L  N  IG   V+GP        IG +  I     +    +G
Sbjct: 265 IRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVG 324

Query: 110 DSCII------------HNGVCIGQDGFGFFVD----EHGNMLKKPQLL---NARIGNHV 150
           +   +               V IG      FV+      G   K   L    +A IG +V
Sbjct: 325 EGATVGPFARLRPGAVLGADVHIGN-----FVEVKKATIGKGSKAGHLTYLGDAEIGENV 379

Query: 151 EIGANSCI---DRGSWRDTVIGDHSKI 174
            IGA +     D  +   T+IGD+  I
Sbjct: 380 NIGAGTITCNYDGKNKFKTIIGDNVFI 406

Length = 460

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 38/144 (26%), Positives = 48/144 (33%), Gaps = 48/144 (33%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP-------------------AVTIGQST 95
           I    +I     ++   ++G  V I SG V+G                     V IG   
Sbjct: 40  IGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDV 99

Query: 96  NIGFNV-----ALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHV 150
            IG N      AL + +IGD   I N V I                      N RIG + 
Sbjct: 100 EIGANTTIDRGALGDTVIGDGTKIDNLVQIAH--------------------NVRIGENC 139

Query: 151 EIGANSCIDRGSWRDTVIGDHSKI 174
            I A   I  GS   T IGD+  I
Sbjct: 140 LIAAQVGIA-GS---TTIGDNVII 159

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 44/122 (36%)

Query: 61  IEVGAIVHSKAVLGANVCIGSGTVV-GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVC 119
           +E    +    V+G    I SGT + GP   IG+           NC IG +  I     
Sbjct: 239 VEENVTIKGPVVIGEGAVIRSGTYIEGPVY-IGK-----------NCDIGPNAYIRPYTV 286

Query: 120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQ 179
           IG                     N  IGN VEI           ++++I + +KI +L  
Sbjct: 287 IGN--------------------NVHIGNAVEI-----------KNSIIMEGTKIPHLSY 315

Query: 180 VG 181
           VG
Sbjct: 316 VG 317

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 59  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG--------QSTNIGFNVAL-SNCIIG 109
           V I  G  +H KAV+   V IG    +GP   IG          T IG NV + +N +I 
Sbjct: 1   VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60

Query: 110 DSCIIHNGVCIG 121
               I +   IG
Sbjct: 61  GGVKIGDNAVIG 72

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 44/159 (27%), Positives = 60/159 (37%), Gaps = 37/159 (23%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI---------------GQSTNIGF 99
           ID  V I    ++H    L     IG   VVGP  T+               G  + IG 
Sbjct: 268 IDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIG- 326

Query: 100 NVALSNCIIGDSCIIHNGVCIGQDG-FGFFVD----EHGNMLKKPQLL---NARIGNHVE 151
               +   +G    +  G  +G++G  G FV+      G   K P L    +A IG H  
Sbjct: 327 ----AGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSN 382

Query: 152 IGANSCI---DRGSWRDTVIGDHSKI--DNL----VQVG 181
           IGA+S     D  +   T IG H +   D +    V VG
Sbjct: 383 IGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVG 421

Length = 482

>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN-C 106
           I  +   I          +      +G  V IG   VV  A  IG   +IG N  +   C
Sbjct: 50  ILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVV-NAAQIGSYVHIGKNCVIGRRC 108

Query: 107 IIGDSCII 114
           II D   I
Sbjct: 109 IIKDCVKI 116

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 161

>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 36/128 (28%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV----GPAVTIGQSTNIGFNVAL-- 103
             SA +  T      A+V    ++G NV +G G  +    G  + IG + NI   V +  
Sbjct: 6   DPSAYVHPT------AVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHA 59

Query: 104 ---------SNCIIGDSCIIHNGVCIGQD---GFGFFVDEHGNMLKKPQLLNARIGNHVE 151
                     N  I    I+H    IG +   GF   V             NA++G++  
Sbjct: 60  LEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVV------------FNAKVGDNCV 107

Query: 152 IGANSCID 159
           IG N+ +D
Sbjct: 108 IGHNAVVD 115

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167

>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 61  IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 120
           ++  + VH  AVL  +V IG    +GP  ++    + G  V      + D+C+IH     
Sbjct: 3   VDPSSFVHPTAVLIGDVIIGKNCYIGPHASL--RGDFGRIVIRDGANVQDNCVIH----- 55

Query: 121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS 172
           G  G    ++E+G++     L    IG +  +G N+ +  G+    VIG+ S
Sbjct: 56  GFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGA----VIGEES 103

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 54  CID----STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIG 109
            ID       +I  G  + +   +G NV IG   ++   V I  S  IG        IIG
Sbjct: 216 TIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIG-----KYVIIG 270

Query: 110 DSCIIHNGVCIG 121
               I   + IG
Sbjct: 271 GQVGIAGHLEIG 282

Length = 338

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 44/136 (32%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           I   V+IE   I+    V+G NV IG G+V                  + + +IGD+ +I
Sbjct: 271 IGRDVVIEPNVILEGNTVIGDNVVIGPGSV------------------IKDSVIGDNAVI 312

Query: 115 HN-----GVCIGQDG-FGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 165
                  G  +G+    G F       G +L      +  IGN VE+           + 
Sbjct: 313 KAYSVIEGSTVGEGATVGPFA--RLRPGAVLGA----DVHIGNFVEV-----------KK 355

Query: 166 TVIGDHSKIDNLVQVG 181
             IG  SK  +L  +G
Sbjct: 356 ATIGKGSKAGHLTYLG 371

Length = 460

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           I  + +I   AI+   +V+G NV IG G  +  ++ +  +  IG N  + + IIGD+ +I
Sbjct: 2   IGESTVIGENAIIK-NSVIGDNVRIGDGVTITNSI-LMDNVTIGANSVIVDSIIGDNAVI 59

Query: 115 HNGV 118
              V
Sbjct: 60  GENV 63

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 26/103 (25%)

Query: 72  VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE 131
           ++G +  IG   ++  +V IG +  IG  V ++N I+ D+  I                 
Sbjct: 1   LIGESTVIGENAIIKNSV-IGDNVRIGDGVTITNSILMDNVTIGANS------------- 46

Query: 132 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
                    ++++ IG++  IG N  +        +IGD   +
Sbjct: 47  --------VIVDSIIGDNAVIGENVRVVNLC----IIGDDVVV 77

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 20/102 (19%)

Query: 76  NVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM 135
           N+ IG    +GP   I     I          IGD+ +I   V I    +    D     
Sbjct: 1   NISIGDNVYIGPGCVISAGGGI---------TIGDNVLIGPNVTI----YDHNHDIDDPE 47

Query: 136 LKKPQLLNA---RIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
               Q + +    IG+ V IGAN  I  G      IGD + +
Sbjct: 48  RPIEQGVTSAPIVIGDDVWIGANVVILPG----VTIGDGAVV 85

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 73  LGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGF-GFFVD 130
           +G N  IG+   +   V IG +  I  NV++     I D   I   V    D +    + 
Sbjct: 1   IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIY 60

Query: 131 EHGNMLKKPQLLNARIGNHVEIGANSCI 158
               +          +     IGAN+ I
Sbjct: 61  RKWELKG------TTVKRGASIGANATI 82

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 61  IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVC 119
           IE GAI+  + ++G N  I  G V+     IG+ T I  N  L     +G +  I  G  
Sbjct: 89  IEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAV 148

Query: 120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161
           +              +++ P      I ++V IGAN+ I  G
Sbjct: 149 L------------AGVIEPPSAKPVVIEDNVLIGANAVILEG 178

This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. Length = 231

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 29/117 (24%)

Query: 48  IFHQSACIDSTVLIEVGA-IVHSKAV---LGANVCIGSGTVV----GPAVTIGQSTNIGF 99
           ++ ++  I +       A  V+   V   L A  CI SGTV        V IG+ + I  
Sbjct: 269 LYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISGTVENSVLFRGVRIGKGSVIEN 328

Query: 100 NVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 156
           +V + +  IG+  ++     I        +D+           N  IG  V IG + 
Sbjct: 329 SVIMPDVEIGEGAVLRR--AI--------IDK-----------NVVIGEGVVIGGDK 364

Length = 393

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 26/85 (30%)

Query: 91  IGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHV 150
           IG+ST IG N  + N +IGD+  I +GV I                      N+ + ++V
Sbjct: 2   IGESTVIGENAIIKNSVIGDNVRIGDGVTI---------------------TNSILMDNV 40

Query: 151 EIGANSCIDRGSWRDTVIGDHSKID 175
            IGANS I      D++IGD++ I 
Sbjct: 41  TIGANSVI-----VDSIIGDNAVIG 60

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 37/149 (24%), Positives = 50/149 (33%), Gaps = 34/149 (22%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI---------- 97
           I    A I   V I    IV     +G  V + S  V+    TIG+ T I          
Sbjct: 6   IIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVP 65

Query: 98  ---GFNVALSNCIIGDSCIIHNGVCI--GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI 152
               +    +  IIGD+  I   V I  G    G                  RIGN+  +
Sbjct: 66  QDLKYKGEKTRLIIGDNNTIREFVTINRGTASGGGVT---------------RIGNNNLL 110

Query: 153 GANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
            A S I      D V+G+H  + N   + 
Sbjct: 111 MAYSHIA----HDCVVGNHVILANNATLA 135

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|184189 PRK13627, PRK13627, carnitine operon protein CaiE; Provisional

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 13/125 (10%)

Query: 60  LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVC 119
           ++   A VH  AVL  +V +G+G  +GP  ++    + G  +  +   + D CI+H G C
Sbjct: 12  VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASL--RGDYGRLIVQAGANLQDGCIMH-GYC 68

Query: 120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKID--NL 177
                    V E+G++     L    IG    +G NS I  G+    VIG+ S +   + 
Sbjct: 69  ----DTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGA----VIGEESIVAAMSF 120

Query: 178 VQVGF 182
           V+ GF
Sbjct: 121 VKAGF 125

Length = 196

>gnl|CDD|100041 cd03350, LbH_THP_succinylT, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 15/93 (16%)

Query: 45  GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS 104
            G I    A I    ++ + + V+  A +     + S   VG    IG++ ++     + 
Sbjct: 6   PGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65

Query: 105 ---------------NCIIGDSCIIHNGVCIGQ 122
                          +  IG +C +  GV +G+
Sbjct: 66  GVLEPLQATPVIIEDDVFIGANCEVVEGVIVGK 98

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. Length = 139

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.91
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.89
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.86
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.82
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.81
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.79
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.78
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.78
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.77
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.77
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.76
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.75
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.75
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.74
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.74
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.74
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.73
PRK13627	196	carnitine operon protein CaiE; Provisional	99.73
PLN02296	269	carbonate dehydratase	99.73
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.73
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.73
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.73
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.72
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.72
PLN02296	269	carbonate dehydratase	99.72
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.72
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.72
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.72
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.71
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.71
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.71
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.71
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.7
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.7
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.7
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.69
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.69
PLN02472	246	uncharacterized protein	99.69
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.69
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.68
PLN02472	246	uncharacterized protein	99.68
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.68
PRK13627	196	carnitine operon protein CaiE; Provisional	99.68
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.68
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.67
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.67
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.67
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.67
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.67
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.66
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.66
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.65
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.65
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.65
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.65
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.65
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.65
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.64
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.63
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.63
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.63
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.63
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.62
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	99.62
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.61
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.61
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.61
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.6
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.6
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.6
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.59
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.59
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.58
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.58
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.58
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.57
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.57
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.57
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.56
PRK10502	182	putative acyl transferase; Provisional	99.55
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.54
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.54
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.54
PRK10502	182	putative acyl transferase; Provisional	99.53
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.53
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.53
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.53
PLN02694	294	serine O-acetyltransferase	99.52
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.52
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.52
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.51
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.51
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.51
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.51
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.5
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.5
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.49
PRK11132	273	cysE serine acetyltransferase; Provisional	99.49
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.49
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.49
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.48
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.48
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.48
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.47
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.47
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	99.46
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.46
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.46
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.46
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.46
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.46
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.46
PRK10191	146	putative acyl transferase; Provisional	99.46
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.45
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.45
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.45
PRK10092	183	maltose O-acetyltransferase; Provisional	99.44
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.43
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.42
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.42
PLN02357	360	serine acetyltransferase	99.42
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.42
PLN02739	355	serine acetyltransferase	99.41
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	99.41
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	99.4
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.4
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.39
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.38
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.37
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	99.37
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	99.37
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.36
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.34
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.34
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.34
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.31
PLN02694	294	serine O-acetyltransferase	99.3
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.3
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.29
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.29
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.28
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.28
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.28
PRK10191	146	putative acyl transferase; Provisional	99.27
PRK10092	183	maltose O-acetyltransferase; Provisional	99.26
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.26
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	99.25
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.24
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.24
PRK11132	273	cysE serine acetyltransferase; Provisional	99.23
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.23
PLN02357	360	serine acetyltransferase	99.22
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	99.19
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.17
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.17
PLN02739	355	serine acetyltransferase	99.17
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	99.16
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.16
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	99.1
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.09
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.07
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	99.05
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.05
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.96
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.95
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.93
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.92
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.87
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.86
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.85
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.84
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.78
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.77
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.72
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.59
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.45
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.34
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	98.24
COG4801	277	Predicted acyltransferase [General function predic	98.2
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	98.09
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.0
COG4801	277	Predicted acyltransferase [General function predic	97.55
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	92.03
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	91.51
PF04519	101	Bactofilin: Polymer-forming cytoskeletal; InterPro	87.64

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.91  E-value=1.9e-23  Score=163.10  Aligned_cols=140  Identities=44%  Similarity=0.691  Sum_probs=119.7

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEec-eEECCCCEECCCcEE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCI  120 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i  120 (183)
                      .+.+...+.+.+.+++++.++++++|++++.||+++.|+++++|++++.||+++.|+.++.|.. +.||++|.|++++.|
T Consensus       101 ~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavI  180 (338)
T COG1044         101 GIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVI  180 (338)
T ss_pred             ccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEE
Confidence            3445556677777777777778888888888888888888888888888888888888888854 999999999999999


Q ss_pred             CCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      +.+.|+|.....+ ..+..+.+.++|+++|.||++++|+++..++|+|++++.|++.++|+|
T Consensus       181 G~dgFg~a~~~~g-~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaH  241 (338)
T COG1044         181 GADGFGYAGTAIG-WVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGH  241 (338)
T ss_pred             ccCccccccccCC-ceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEcc
Confidence            9999999876666 567778889999999999999999999999999999999999988876

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.89  E-value=1e-21  Score=156.69  Aligned_cols=140  Identities=40%  Similarity=0.643  Sum_probs=112.6

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCI  120 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i  120 (183)
                      .+.....+++.+.|++++.|++++.|++++.||++|.|++++.|+++++||++|.|++++.|. +++|+++|.|++++.|
T Consensus        93 ~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI  172 (324)
T TIGR01853        93 GIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI  172 (324)
T ss_pred             CcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence            345556677777777777777777777778888888888888888888889999999999996 8999999999999999


Q ss_pred             CCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +.++|+|.....+...+..+.+.++||+++.||+++++..+...+++||+++.|++.++|+
T Consensus       173 g~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~  233 (324)
T TIGR01853       173 GSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIA  233 (324)
T ss_pred             CCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEEC
Confidence            9998888765444455566677899999999999999987766667777777777776664

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.86  E-value=2e-20  Score=150.74  Aligned_cols=140  Identities=44%  Similarity=0.688  Sum_probs=108.7

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEec-eEECCCCEECCCcEE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCI  120 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i  120 (183)
                      .+.....+.+.+.+++++.|++++.|++++.||+++.|+++++|++++.||++|.|++++.|.+ +.|+++|.|++++.|
T Consensus       102 ~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I  181 (343)
T PRK00892        102 GIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI  181 (343)
T ss_pred             cCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEE
Confidence            3445556666666666677777777777777777788888888888888888888888888854 669999999999999


Q ss_pred             CCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      +.++|+|. ...+...+..+.+.++||++++||+++++.++...+++||+++.|+++++|++
T Consensus       182 g~~~f~~~-~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~  242 (343)
T PRK00892        182 GSDGFGFA-NDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAH  242 (343)
T ss_pred             eccCcCcc-cCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEcc
Confidence            99988887 34444555667779999999999999999877666677777777777776643

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.82  E-value=1.7e-18  Score=125.68  Aligned_cols=103  Identities=21%  Similarity=0.245  Sum_probs=61.3

Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceee--c-cCC-ccccCCceeceEECC
Q 030076           73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV--D-EHG-NMLKKPQLLNARIGN  148 (183)
Q Consensus        73 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~--~-~~~-~~~~~~~~~~~~Ig~  148 (183)
                      |+++|.|++++.|. +++|++++.|++++.+.+++|++++.|++++.+.+..+....  . .++ .........+++|++
T Consensus        56 Ig~~~~I~~~~~i~-~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~  134 (163)
T cd05636          56 LGDGCVVGNSVEVK-NSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGD  134 (163)
T ss_pred             ECCCCEECCCcEEe-eeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcC
Confidence            33333333333332 234555555555555556666666666666666542221100  0 000 000111234799999


Q ss_pred             CCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          149 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       149 ~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      +++||.++.+.++    ++||+++.|+++++|
T Consensus       135 ~~~ig~~~~i~~g----~~ig~~~~i~agsvV  162 (163)
T cd05636         135 GVKTGINVSLNPG----VKIGPGSWVYPGCVV  162 (163)
T ss_pred             CeEECCCcEECCC----cEECCCCEECCCcEe
Confidence            9999999999998    999999999999987

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.81  E-value=4.5e-19  Score=135.19  Aligned_cols=148  Identities=22%  Similarity=0.266  Sum_probs=110.8

Q ss_pred             hhhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccc-eEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEE
Q 030076           13 TKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQS-ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI   91 (183)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~-~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~I   91 (183)
                      +.+||.|+   +.|+..+..++.......  .......+. .+++.++.|++++.|.+++.||+++.|++++.|..+++|
T Consensus        45 ~~gyW~Di---~~yl~an~diL~~~~~~~--~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~I  119 (231)
T TIGR03532        45 LFGEWEDI---EPFIEANKDKIKDYRIEN--DRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEI  119 (231)
T ss_pred             EEEeHHHH---HHHHHHhHhhhcceEEee--cccccccccccccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEE
Confidence            45799999   888888888775432100  000111111 245667777778888888888888888888888888899


Q ss_pred             CCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECC
Q 030076           92 GQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGD  170 (183)
Q Consensus        92 g~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~  170 (183)
                      |++|.|++++.|. +++|+++|.|++++.+.+..            ......+++|+++++||+++++.++    ++||+
T Consensus       120 G~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~------------~~~~~~~v~IGd~v~IG~gsvI~~g----~~Ig~  183 (231)
T TIGR03532       120 GEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVI------------EPPSAKPVVIEDNVLIGANAVILEG----VRVGK  183 (231)
T ss_pred             CCCCEEccccccCCCcEECCCcEEcCCcEEcccc------------ccccCCCeEECCCcEECCCCEEcCC----CEECC
Confidence            9999999999985 78999999999999997410            0011236899999999999999988    99999


Q ss_pred             CCEECCCCeEe
Q 030076          171 HSKIDNLVQVG  181 (183)
Q Consensus       171 ~~~I~~~~~v~  181 (183)
                      ++.|+++++|.
T Consensus       184 ~~~IgagsvV~  194 (231)
T TIGR03532       184 GAVVAAGAIVT  194 (231)
T ss_pred             CCEECCCCEEc
Confidence            99999999874

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.79  E-value=2.9e-18  Score=134.19  Aligned_cols=136  Identities=26%  Similarity=0.335  Sum_probs=85.8

Q ss_pred             cccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCC------CEECCCcEECCCcEEe----------
Q 030076           41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA------VTIGQSTNIGFNVALS----------  104 (183)
Q Consensus        41 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~------~~Ig~~~~Ig~~~~i~----------  104 (183)
                      ..++.++.++++++|++++.|+++++|.++++|+++|.||++++|.++      +.||++|.|+++++|.          
T Consensus       112 A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~  191 (338)
T COG1044         112 ATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTA  191 (338)
T ss_pred             CccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCcccccccc
Confidence            455566666666666666666666666666666666666665555554      5556666666666662          


Q ss_pred             ----------ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC--CCCeEECCCC
Q 030076          105 ----------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS--WRDTVIGDHS  172 (183)
Q Consensus       105 ----------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~--~~~~~Ig~~~  172 (183)
                                +++|+++|.||.+++|...-+..+...++++...    .+-|+.+|.||+++.|..++  ...+.||+++
T Consensus       192 ~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN----~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v  267 (338)
T COG1044         192 IGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDN----LVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYV  267 (338)
T ss_pred             CCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcc----eeEEccccEECCCcEEeccceeeccceECCeE
Confidence                      5889999999999999987666666666666653    34555555555555554443  2336666666


Q ss_pred             EECCCCeE
Q 030076          173 KIDNLVQV  180 (183)
Q Consensus       173 ~I~~~~~v  180 (183)
                      .|+..+-|
T Consensus       268 ~igg~vgI  275 (338)
T COG1044         268 IIGGQVGI  275 (338)
T ss_pred             EECcceee
Confidence            66555544

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.78  E-value=6.1e-18  Score=131.13  Aligned_cols=85  Identities=24%  Similarity=0.282  Sum_probs=49.2

Q ss_pred             CEECCCcEECCCcEEe--------ceEECCCCEECCCcEECCCCCceeeccCCcccc-CCce-eceEECCCCEECCCcEE
Q 030076           89 VTIGQSTNIGFNVALS--------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK-KPQL-LNARIGNHVEIGANSCI  158 (183)
Q Consensus        89 ~~Ig~~~~Ig~~~~i~--------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~Ig~~~~Ig~~~~v  158 (183)
                      ++||++|.|+++|.|.        .++|+++|.|++++.|.++    ....+..... .... .++.||++++|++++.+
T Consensus        78 v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~----~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i  153 (254)
T cd03351          78 LEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHD----CVIGNNVILANNATLAGHVEIGDYAIIGGLSAV  153 (254)
T ss_pred             EEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCC----CEECCCcEECCCccccCCcEeCCCcEECCcceE
Confidence            3445555555555553        2445555555555555321    1111222221 2223 46788888888888888


Q ss_pred             cCCCCCCeEECCCCEECCCCeEe
Q 030076          159 DRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       159 ~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .++    +.||++++|++++.|.
T Consensus       154 ~~~----v~Ig~~~~Ig~~s~V~  172 (254)
T cd03351         154 HQF----CRIGRHAMVGGGSGVV  172 (254)
T ss_pred             CCC----cEECCCCEECcCCEEe
Confidence            877    8889999998888874

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.78  E-value=1e-17  Score=130.26  Aligned_cols=36  Identities=19%  Similarity=0.339  Sum_probs=31.3

Q ss_pred             eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       142 ~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +.+.||++++||.++.+.++    ++||++++|+++++|.
T Consensus       140 g~v~Igd~~~Ig~~~~i~~~----v~Ig~~~~Ig~gs~V~  175 (262)
T PRK05289        140 GHVEVGDYAIIGGLTAVHQF----VRIGAHAMVGGMSGVS  175 (262)
T ss_pred             cccccCCcEEEeecceecCC----CEECCCCEEeeeccee
Confidence            46888888899988888888    9999999999999885

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.77  E-value=3.7e-17  Score=126.77  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=26.5

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++||++++|++++.+.++    ++||++++|++++.|.
T Consensus       137 ~~~Igd~~~Ig~~~~i~~~----v~Ig~~~~Ig~~s~V~  171 (254)
T TIGR01852       137 HVEVGDYAIIGGLVAVHQF----VRIGRYAMIGGLSAVS  171 (254)
T ss_pred             CcEECCCcEEeccCEECCC----cEECCCCEEeeeeeEe
Confidence            6777777777777777766    8888888888888774

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.77  E-value=2.7e-17  Score=127.48  Aligned_cols=79  Identities=25%  Similarity=0.274  Sum_probs=69.0

Q ss_pred             CCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------ceEECCC
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDS  111 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------~~~I~~~  111 (183)
                      +...|++.+.|++++.|++++.|++++.||++|.|++++.|+++++||++|.|++++.|.             +++|+++
T Consensus         4 ~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~   83 (254)
T cd03351           4 PTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDN   83 (254)
T ss_pred             CCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCC
Confidence            445678888888888888888888889999999999999998899999999999999995             6889999


Q ss_pred             CEECCCcEECCC
Q 030076          112 CIIHNGVCIGQD  123 (183)
Q Consensus       112 ~~Ig~~~~i~~~  123 (183)
                      |.|++++.|...
T Consensus        84 ~~Ig~~~~I~~~   95 (254)
T cd03351          84 NTIREFVTIHRG   95 (254)
T ss_pred             CEECCccEEecc
Confidence            999999999863

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.76  E-value=6.8e-17  Score=114.35  Aligned_cols=110  Identities=18%  Similarity=0.249  Sum_probs=78.9

Q ss_pred             CCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe---------ceEECCCCEEC
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS---------NCIIGDSCIIH  115 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~---------~~~I~~~~~Ig  115 (183)
                      ++..+.++++|++++.|..++.+..++.|++++.|+.++.|+.+++|+++|.|++++.|.         .++|+++++|+
T Consensus         6 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig   85 (139)
T cd03350           6 PGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIG   85 (139)
T ss_pred             CCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEEC
Confidence            344455555566666666566666666667777777777776677777777777777774         36788888888


Q ss_pred             CCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++.|.+                    ++.|++++.|++++++.++    +.|+++   +++++|.
T Consensus        86 ~~a~I~~--------------------gv~Ig~~~~Ig~g~~V~~~----~~I~~~---~~~~~v~  124 (139)
T cd03350          86 ANCEVVE--------------------GVIVGKGAVLAAGVVLTQS----TPIYDR---ETGEIYY  124 (139)
T ss_pred             CCCEECC--------------------CCEECCCCEEcCCCEEcCC----eEeccc---CcccEEe
Confidence            8888876                    7888888888888888877    778877   7777764

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.75  E-value=1.5e-17  Score=119.61  Aligned_cols=100  Identities=30%  Similarity=0.403  Sum_probs=55.9

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECC---CCEECCCcEECCCcEEe-----ceEECCCCEEC
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVALS-----NCIIGDSCIIH  115 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i~-----~~~I~~~~~Ig  115 (183)
                      ....++.|.+.+-+++.|++++.|++++            +|++   ...||+++.|+++|.|.     .++||+++.||
T Consensus        15 ~~~a~Va~~A~viGdV~Ig~~vsIw~~a------------VlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIG   82 (176)
T COG0663          15 DPTAFVAPSATVIGDVRIGAGVSIWPGA------------VLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIG   82 (176)
T ss_pred             CCceEECCCCEEEEeEEECCCCEECCce------------EEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEc
Confidence            3344444444444444455554444444            4432   33556666666666652     45566666666


Q ss_pred             CCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      +++.+.                     +|.|+++|.||.|+++..|    ++||++|+|+++++|
T Consensus        83 H~aivH---------------------Gc~Ig~~~lIGmgA~vldg----a~IG~~~iVgAgalV  122 (176)
T COG0663          83 HGAVVH---------------------GCTIGDNVLIGMGATVLDG----AVIGDGSIVGAGALV  122 (176)
T ss_pred             CccEEE---------------------EeEECCCcEEecCceEeCC----cEECCCcEEccCCcc
Confidence            666665                     5666666666666666655    666666666666655

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.75  E-value=9.2e-17  Score=119.65  Aligned_cols=130  Identities=24%  Similarity=0.335  Sum_probs=73.5

Q ss_pred             EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCC-Cc
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG-FG  126 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~-~~  126 (183)
                      .+.++++|++++.|++++.|.+++.|+++|.|++++.|++. .|++++.|++++.|.+++|++++.|++++.|..+. ++
T Consensus        11 ~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~-~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig   89 (193)
T cd03353          11 YIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLG   89 (193)
T ss_pred             EEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCC-EECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEEC
Confidence            34445555555555555555555555555555555555443 55555555555555555555555544444443210 00


Q ss_pred             -------eee-----ccCC-----------------ccc------c---CCceeceEECCCCEECCCcEEcCCCCCCeEE
Q 030076          127 -------FFV-----DEHG-----------------NML------K---KPQLLNARIGNHVEIGANSCIDRGSWRDTVI  168 (183)
Q Consensus       127 -------~~~-----~~~~-----------------~~~------~---~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~I  168 (183)
                             +..     ..++                 ...      .   .....+++||++++++.++++.++    ++|
T Consensus        90 ~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~----~~I  165 (193)
T cd03353          90 EGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP----VTI  165 (193)
T ss_pred             CCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC----cEE
Confidence                   000     0000                 000      0   001236789999999999999888    999


Q ss_pred             CCCCEECCCCeEee
Q 030076          169 GDHSKIDNLVQVGF  182 (183)
Q Consensus       169 g~~~~I~~~~~v~~  182 (183)
                      |+++.|+++++|.+
T Consensus       166 g~~~~i~~gs~V~~  179 (193)
T cd03353         166 GDGATIAAGSTITK  179 (193)
T ss_pred             CCCcEECCCCEEcc
Confidence            99999999998853

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.74  E-value=1e-16  Score=116.45  Aligned_cols=112  Identities=14%  Similarity=0.210  Sum_probs=85.5

Q ss_pred             CCcEEccceEECCCcEECCCcEEc---cCcEECCCcEECCCCEECCC----------CEECCCcEECCCcEEeceEECCC
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVH---SKAVLGANVCIGSGTVVGPA----------VTIGQSTNIGFNVALSNCIIGDS  111 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~I~~~~~I~~~----------~~Ig~~~~Ig~~~~i~~~~I~~~  111 (183)
                      ....+.++.+|++++.|++++.|.   +++.||++|.|++++.|...          +.||+++.+..++.|.+++|+++
T Consensus        10 ~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~   89 (164)
T cd04646          10 QESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNN   89 (164)
T ss_pred             CCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCC
Confidence            334444445555555555555553   34567777888888877543          45888888888888989999999


Q ss_pred             CEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          112 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       112 ~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      |+|++++.|.+                    ++.||++++||++++|.++    +.|+++++++.+..+
T Consensus        90 ~~Ig~~a~I~~--------------------gv~Ig~~~~IgagsvV~~~----~~i~~~~vi~g~~~~  134 (164)
T cd04646          90 NVFESKSFVGK--------------------NVIITDGCIIGAGCKLPSS----EILPENTVIYGADCL  134 (164)
T ss_pred             CEEeCCCEECC--------------------CCEECCCCEEeCCeEECCC----cEECCCeEEeCCceE
Confidence            99999999987                    8999999999999999987    888888888777654

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.74  E-value=6.3e-17  Score=125.46  Aligned_cols=131  Identities=28%  Similarity=0.320  Sum_probs=81.9

Q ss_pred             CcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------ceEECCCC
Q 030076           46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDSC  112 (183)
Q Consensus        46 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------~~~I~~~~  112 (183)
                      ...+.+.++|++++.|++++.|++++.|++++.|++++.|.++++||+++.|++++.|.             +++||++|
T Consensus         4 ~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~   83 (254)
T TIGR01852         4 TAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNN   83 (254)
T ss_pred             CCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCC
Confidence            44566666676677777777777777777777777777777777777777777777775             46788888


Q ss_pred             EECCCcEECCCCC---ceeeccCCccc-cCCce-eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          113 IIHNGVCIGQDGF---GFFVDEHGNML-KKPQL-LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       113 ~Ig~~~~i~~~~~---~~~~~~~~~~~-~~~~~-~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      .|++++.|.....   ......+.... ..... .++.||++++|++++.+..+    ++||+++.|++++.|
T Consensus        84 ~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~----~~Igd~~~Ig~~~~i  152 (254)
T TIGR01852        84 TIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH----VEVGDYAIIGGLVAV  152 (254)
T ss_pred             EECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCC----cEECCCcEEeccCEE
Confidence            8888777775321   01111111111 11222 25666666666666666655    777777666666655

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.74  E-value=7.6e-17  Score=134.22  Aligned_cols=35  Identities=29%  Similarity=0.334  Sum_probs=31.7

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ++.||++++||+++++.++    +.||++++|++++.|.
T Consensus       380 ~~~Ig~~~~ig~~~~i~~~----~~Ig~~~~ig~~s~v~  414 (446)
T PRK14353        380 RTEIGAGAFIGSNSALVAP----VTIGDGAYIASGSVIT  414 (446)
T ss_pred             CcEECCCcEECCCCEEeCC----CEECCCCEECCCCEEC
Confidence            6889999999999999988    9999999999999874

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.73  E-value=1.4e-16  Score=127.28  Aligned_cols=164  Identities=21%  Similarity=0.253  Sum_probs=91.0

Q ss_pred             hhhhhHHHhhhhhhcccchhhhhhhh------hcccCCCcEEccceEECCCcEECCCcEEccCcEEC------CCcEECC
Q 030076           14 KTYKQDFGRFCNLFSTKSDIESRQQF------QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLG------ANVCIGS   81 (183)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig------~~~~I~~   81 (183)
                      ..+..++.+...+|.+..........      ...+..+..|+++++|++++.|++++.|+++++|+      ++|.|++
T Consensus        71 ~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~  150 (324)
T TIGR01853        71 KDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHP  150 (324)
T ss_pred             CCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECC
Confidence            45556666666666333221111111      22344555555555555555555555555555544      4444445


Q ss_pred             CCEECCCCEECCCcEECCCcEEe---------------------ceEECCCCEECCCcEECCCCCceeeccCCccccC-C
Q 030076           82 GTVVGPAVTIGQSTNIGFNVALS---------------------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK-P  139 (183)
Q Consensus        82 ~~~I~~~~~Ig~~~~Ig~~~~i~---------------------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~-~  139 (183)
                      ++.|+++++||++|.|+++|.|.                     .++|++++.||+++.|....++.+...++++... .
T Consensus       151 ~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v  230 (324)
T TIGR01853       151 NVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLV  230 (324)
T ss_pred             CcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcEEccCc
Confidence            55555566777777777777773                     3788899999999888654444333333333221 1


Q ss_pred             ce-------------------eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          140 QL-------------------LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       140 ~~-------------------~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +.                   +.+.||++++++.++.|.++    +.||++++|++++.|.
T Consensus       231 ~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~----v~Ig~~~~ig~~s~V~  287 (324)
T TIGR01853       231 QIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGH----LEIGDNVTIGAKSGVT  287 (324)
T ss_pred             EECCCCEECCCcEECCcceEcCccEECCCeEEccccccccC----CEECCCCEEccCCEeC
Confidence            11                   23444445555555555544    7777777777777764

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.73  E-value=9e-17  Score=119.63  Aligned_cols=95  Identities=24%  Similarity=0.394  Sum_probs=55.9

Q ss_pred             CCCcEEccCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEe-----ceEECCCCEECCCcEECCCCCceeeccCC
Q 030076           62 EVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALS-----NCIIGDSCIIHNGVCIGQDGFGFFVDEHG  133 (183)
Q Consensus        62 ~~~~~i~~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~-----~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~  133 (183)
                      ++++.|.+++.||++|.|+++++|+++   ++|++++.|+++|.|.     +++|++++.|++++.+.            
T Consensus        20 ~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~------------   87 (196)
T PRK13627         20 HPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILH------------   87 (196)
T ss_pred             CCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEe------------
Confidence            333333334444444444455544332   3455555555555552     35666777777766665            


Q ss_pred             ccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          134 NMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       134 ~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                               +++||++|+||.++++.+|    ++||++++|+++++|.
T Consensus        88 ---------g~vIG~~v~IG~ga~V~~g----~~IG~~s~Vgags~V~  122 (196)
T PRK13627         88 ---------GCVIGRDALVGMNSVIMDG----AVIGEESIVAAMSFVK  122 (196)
T ss_pred             ---------eEEECCCCEECcCCccCCC----cEECCCCEEcCCCEEe
Confidence                     6667777777777777766    7777777777777663

>PLN02296 carbonate dehydratase

Probab=99.73  E-value=1.3e-16  Score=123.89  Aligned_cols=87  Identities=22%  Similarity=0.342  Sum_probs=43.0

Q ss_pred             cCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEe-----------ceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076           69 SKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALS-----------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGN  134 (183)
Q Consensus        69 ~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~-----------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~  134 (183)
                      +++.||++|.|+++|+|++.   ++||++|.|+++|.|.           +++|+++|.|++++.+.             
T Consensus        69 G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~-------------  135 (269)
T PLN02296         69 GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLH-------------  135 (269)
T ss_pred             cceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceec-------------
Confidence            33444444444444444332   2455555555555442           34555555555555553             


Q ss_pred             cccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          135 MLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       135 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                              +++|+++|+||.++++.+|    ++|+++++|+++++|
T Consensus       136 --------g~~Igd~v~IG~ga~I~~g----v~Ig~~a~IgagSvV  169 (269)
T PLN02296        136 --------GCTVEDEAFVGMGATLLDG----VVVEKHAMVAAGALV  169 (269)
T ss_pred             --------CCEECCCcEECCCcEECCC----eEECCCCEECCCCEE
Confidence                    4555555555555555554    555555555555544

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.73  E-value=1.2e-16  Score=115.09  Aligned_cols=102  Identities=22%  Similarity=0.345  Sum_probs=69.2

Q ss_pred             EccceEECCCcEECCCcEEcc---CcEECCCcEECCCCEEC----CCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076           49 FHQSACIDSTVLIEVGAIVHS---KAVLGANVCIGSGTVVG----PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~I~~~~~I~----~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~  121 (183)
                      +..++.|++++.|++++.|.+   ++.||++|.|+++|.|.    .+++|++++.|++++.+.+++|+++|.|+.++.+.
T Consensus        15 i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~   94 (155)
T cd04745          15 LIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVM   94 (155)
T ss_pred             EEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEe
Confidence            333444444444444444443   35666777777777773    34677888888888888888888888888888887


Q ss_pred             CCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076          122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI  174 (183)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I  174 (183)
                      +                    ++.|+++++|++++++.++    +.|++++++
T Consensus        95 ~--------------------g~~Ig~~~~Ig~~s~v~~~----~~i~~~~~v  123 (155)
T cd04745          95 D--------------------GAVIGEESIVGAMAFVKAG----TVIPPRSLI  123 (155)
T ss_pred             C--------------------CCEECCCCEECCCCEeCCC----CEeCCCCEE
Confidence            5                    6778888888888877766    666666654

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.73  E-value=1.6e-16  Score=132.83  Aligned_cols=160  Identities=16%  Similarity=0.204  Sum_probs=106.3

Q ss_pred             hhHHHhhhhhhcccchhhhhhhhh------cccCCC-cEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCC
Q 030076           17 KQDFGRFCNLFSTKSDIESRQQFQ------KWHNGG-GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV   89 (183)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~   89 (183)
                      |.++++++.++.++..++......      ...... ..+.+++.|++++.|++++.|.+++.||++|.|++++.|+ ++
T Consensus       226 ~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~~  304 (459)
T PRK14355        226 IMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIK-GC  304 (459)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEe-CC
Confidence            677788888887755443321110      122232 3466677777777778888888888888888888888885 57


Q ss_pred             EECCCcEECCCcEEeceEECCCCEECCCcEECCCC-------Cc------eeeccCCccc------------cC------
Q 030076           90 TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG-------FG------FFVDEHGNML------------KK------  138 (183)
Q Consensus        90 ~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~-------~~------~~~~~~~~~~------------~~------  138 (183)
                      +||++|.|++++.|.+++|++++.|++++.+.++.       ++      ......+++.            +.      
T Consensus       305 ~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~  384 (459)
T PRK14355        305 RIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRNVNIGCG  384 (459)
T ss_pred             EEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCceeeeeccccCCEECCCCEEccc
Confidence            99999999999999988888888887766665420       00      0000001100            00      


Q ss_pred             --------CceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          139 --------PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       139 --------~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                              ....+++||++++||.++.+.++    +.||++++|++++.|.
T Consensus       385 ~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~----~~ig~~~~i~a~s~v~  431 (459)
T PRK14355        385 TITCNYDGVKKHRTVIEDDVFVGSDVQFVAP----VTVGRNSLIAAGTTVT  431 (459)
T ss_pred             eeecCcCCccccCcEecCCeEEcCCCEEeCC----cEECCCCEECCCCEEc
Confidence                    01235677777777777777777    8889999999888873

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.73  E-value=5.2e-16  Score=116.62  Aligned_cols=36  Identities=31%  Similarity=0.291  Sum_probs=31.9

Q ss_pred             eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       142 ~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++.||++++|++++.+.++    ++||++++|++++.|.
T Consensus       149 ~~~~Ig~~~~ig~~~~v~~~----~~ig~~~~i~~~s~v~  184 (205)
T cd03352         149 GSTTIGDNVIIGGQVGIAGH----LTIGDGVVIGAGSGVT  184 (205)
T ss_pred             cccEECCCeEEcCCCEEeCC----cEECCCCEEcCCCEEe
Confidence            47889999999999999988    9999999999999884

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.72  E-value=2.3e-16  Score=127.19  Aligned_cols=135  Identities=27%  Similarity=0.318  Sum_probs=78.5

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEEC------CCCEECCCCEECCCcEECCCcEEe-----------
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIG------SGTVVGPAVTIGQSTNIGFNVALS-----------  104 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~------~~~~I~~~~~Ig~~~~Ig~~~~i~-----------  104 (183)
                      ++..+..+.++++|++++.|+++++|.++++|++++.||      +++.|.+++.|+++|.|++++.|.           
T Consensus       114 ~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~  193 (343)
T PRK00892        114 KIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRG  193 (343)
T ss_pred             EECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCC
Confidence            455556666666666666666666666655555555444      444555556677777777777773           


Q ss_pred             ---------ceEECCCCEECCCcEECCCCCceeeccCCccccC-Cce-------------------eceEECCCCEECCC
Q 030076          105 ---------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK-PQL-------------------LNARIGNHVEIGAN  155 (183)
Q Consensus       105 ---------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~-~~~-------------------~~~~Ig~~~~Ig~~  155 (183)
                               +++|++++.||+++.|....++.+...++++... .+.                   +.+.||++++|+.+
T Consensus       194 ~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~  273 (343)
T PRK00892        194 GWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQ  273 (343)
T ss_pred             ceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCC
Confidence                     4789999999999988654333333333333321 111                   13444444444444


Q ss_pred             cEEcCCCCCCeEECCCCEECCCCeE
Q 030076          156 SCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       156 ~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      +.+.++    ++||++++|++++.|
T Consensus       274 ~~i~~~----~~ig~~~~i~~~s~v  294 (343)
T PRK00892        274 VGIAGH----LEIGDGVTITAMSGV  294 (343)
T ss_pred             CEEcCC----CEECCCCEEecCCee
Confidence            444443    666666666666555

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.72  E-value=8.4e-17  Score=115.71  Aligned_cols=102  Identities=27%  Similarity=0.435  Sum_probs=91.9

Q ss_pred             hcccCCCcEEccceEECCCcEECCCcEEcc---CcEECCCcEECCCCEECC----CCEECCCcEECCCcEEeceEECCCC
Q 030076           40 QKWHNGGGIFHQSACIDSTVLIEVGAIVHS---KAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSNCIIGDSC  112 (183)
Q Consensus        40 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~I~~~~~I~~----~~~Ig~~~~Ig~~~~i~~~~I~~~~  112 (183)
                      ..+..++..+-.++.|+.++.|..++++..   ...||+++.|.++++|+.    .++||++++||+++.|..|+|+++|
T Consensus        17 ~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~   96 (176)
T COG0663          17 TAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNV   96 (176)
T ss_pred             ceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCc
Confidence            356677777778888999999888888876   558999999999999965    5799999999999999999999999


Q ss_pred             EECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          113 IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       113 ~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      .||-++++.+                    ++.||++|.||+|+.+.++
T Consensus        97 lIGmgA~vld--------------------ga~IG~~~iVgAgalV~~~  125 (176)
T COG0663          97 LIGMGATVLD--------------------GAVIGDGSIVGAGALVTPG  125 (176)
T ss_pred             EEecCceEeC--------------------CcEECCCcEEccCCcccCC
Confidence            9999999998                    8999999999999999988

>PLN02296 carbonate dehydratase

Probab=99.72  E-value=2.5e-16  Score=122.24  Aligned_cols=109  Identities=17%  Similarity=0.281  Sum_probs=88.9

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCc---------EECCCcEECCCCEEC----------CCCEECCCcEECCCcE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKA---------VLGANVCIGSGTVVG----------PAVTIGQSTNIGFNVA  102 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~---------~ig~~~~I~~~~~I~----------~~~~Ig~~~~Ig~~~~  102 (183)
                      .+....++.+++.+.+++.|++++.|++++         .||+++.|+++|+|.          ..++||++|.|+++|.
T Consensus        54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~av  133 (269)
T PLN02296         54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAV  133 (269)
T ss_pred             ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCce
Confidence            445566777777666666667777666655         567778888888885          3568999999999999


Q ss_pred             EeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076          103 LSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI  174 (183)
Q Consensus       103 i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I  174 (183)
                      |.+++|+++|+|+.++.|.+                    ++.|++++.|+++++|.++    ++|.+++++
T Consensus       134 I~g~~Igd~v~IG~ga~I~~--------------------gv~Ig~~a~IgagSvV~~~----~~I~~~~~~  181 (269)
T PLN02296        134 LHGCTVEDEAFVGMGATLLD--------------------GVVVEKHAMVAAGALVRQN----TRIPSGEVW  181 (269)
T ss_pred             ecCCEECCCcEECCCcEECC--------------------CeEECCCCEECCCCEEecC----CEeCCCeEE
Confidence            99999999999999999987                    8999999999999999988    777777764

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.72  E-value=1.6e-16  Score=115.43  Aligned_cols=101  Identities=17%  Similarity=0.273  Sum_probs=73.7

Q ss_pred             CCCcEECCCcEEccCcEECCCcEECCCCEEC---CCCEECCCcEECCCcEEec-----------eEECCCCEECCCcEEC
Q 030076           56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVALSN-----------CIIGDSCIIHNGVCIG  121 (183)
Q Consensus        56 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~---~~~~Ig~~~~Ig~~~~i~~-----------~~I~~~~~Ig~~~~i~  121 (183)
                      ++.+.|.+++.|.++++||+++.|++++.|.   +.++||++|.|+++|.|.+           +.||+++.+..++.+.
T Consensus         3 ~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~   82 (164)
T cd04646           3 APGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE   82 (164)
T ss_pred             CCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE
Confidence            4444555555555566666666666666664   3467888888888888854           3566666666666665


Q ss_pred             CCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                           .++||++|+|++++.+.++    ++||+++.|+++++|.
T Consensus        83 ---------------------~~~IGd~~~Ig~~a~I~~g----v~Ig~~~~IgagsvV~  117 (164)
T cd04646          83 ---------------------ALKIGNNNVFESKSFVGKN----VIITDGCIIGAGCKLP  117 (164)
T ss_pred             ---------------------eeEECCCCEEeCCCEECCC----CEECCCCEEeCCeEEC
Confidence                                 7999999999999999988    8888888888888774

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.72  E-value=1.7e-16  Score=122.69  Aligned_cols=77  Identities=26%  Similarity=0.355  Sum_probs=55.0

Q ss_pred             CcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------ceEECCCC
Q 030076           46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDSC  112 (183)
Q Consensus        46 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------~~~I~~~~  112 (183)
                      ...|++++.|++++.|++.+.|++++.||+++.|++++.|.+.+.||+++.|++++.|.             .+.||+++
T Consensus         5 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~   84 (255)
T PRK12461          5 TAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRN   84 (255)
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCce
Confidence            44556666666666666666666666677777777777777777778888888777774             46788888


Q ss_pred             EECCCcEECC
Q 030076          113 IIHNGVCIGQ  122 (183)
Q Consensus       113 ~Ig~~~~i~~  122 (183)
                      .|+++++|..
T Consensus        85 ~I~e~vtI~~   94 (255)
T PRK12461         85 VIREGVTIHR   94 (255)
T ss_pred             EECCccEEec
Confidence            8888888865

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.72  E-value=7.8e-16  Score=115.63  Aligned_cols=131  Identities=26%  Similarity=0.346  Sum_probs=58.1

Q ss_pred             CcEEccceEECCCcEECCCcEEccCc------EECCCcEECCCCEECCCCEECCCcEECCCcEEe---------------
Q 030076           46 GGIFHQSACIDSTVLIEVGAIVHSKA------VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS---------------  104 (183)
Q Consensus        46 ~~~i~~~~~i~~~~~i~~~~~i~~~~------~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~---------------  104 (183)
                      +..+++.+++++++.|++++.|++++      .|++++.|++++.|+.+++|++++.|++++.|.               
T Consensus         7 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~   86 (205)
T cd03352           7 NVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVK   86 (205)
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEE
Confidence            33444444444444444444444434      444444444444444444555555555555442               


Q ss_pred             -----ceEECCCCEECCCcEECCCCCceeeccCCccccC-Cce-eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCC
Q 030076          105 -----NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK-PQL-LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL  177 (183)
Q Consensus       105 -----~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~-~~~-~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~  177 (183)
                           .+.|++++.|++++.+....+......++..... ... ..+.|++++++++++.+.    +.+.||+++.|+++
T Consensus        87 ~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~----~~~~Ig~~~~ig~~  162 (205)
T cd03352          87 IPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIA----GSTTIGDNVIIGGQ  162 (205)
T ss_pred             cCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEc----cccEECCCeEEcCC
Confidence                 3455555566665555432222222222222211 111 123333333333333333    33777777777777


Q ss_pred             CeE
Q 030076          178 VQV  180 (183)
Q Consensus       178 ~~v  180 (183)
                      +.|
T Consensus       163 ~~v  165 (205)
T cd03352         163 VGI  165 (205)
T ss_pred             CEE
Confidence            766

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.71  E-value=7.8e-17  Score=129.13  Aligned_cols=130  Identities=27%  Similarity=0.389  Sum_probs=89.3

Q ss_pred             ccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCC------
Q 030076           50 HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD------  123 (183)
Q Consensus        50 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~------  123 (183)
                      .....|+..+.|.+++.+..++.||++|.||++|+|.+ +.|++++.|.+.++|.++.|+++|.|||.+.+.++      
T Consensus       266 ~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~d-s~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~  344 (460)
T COG1207         266 RGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKD-SVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGAD  344 (460)
T ss_pred             cCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEe-eEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCC
Confidence            33334444555555555555666677777777777753 48999999999999999999999999988888874      


Q ss_pred             -CCceeeccCCccc-------cCCceeceEECCCCEECCCcEE--cCCC-CCCeEECCCCEECCCCeE
Q 030076          124 -GFGFFVDEHGNML-------KKPQLLNARIGNHVEIGANSCI--DRGS-WRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       124 -~~~~~~~~~~~~~-------~~~~~~~~~Ig~~~~Ig~~~~v--~~g~-~~~~~Ig~~~~I~~~~~v  180 (183)
                       .++.|.+.+...+       ++.+++++.||+++.||+|++.  -+|. ++.|+||+++.||+++.+
T Consensus       345 ~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~L  412 (460)
T COG1207         345 VHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQL  412 (460)
T ss_pred             CeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcE
Confidence             3456666665443       3567788888888888888755  2333 555666666666665543

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.71  E-value=2.1e-16  Score=117.36  Aligned_cols=99  Identities=18%  Similarity=0.323  Sum_probs=59.2

Q ss_pred             cCCCcEEccceEECCCcEECCCcEEccCcE---------ECCCcEECCCCEEC----CCCEECCCcEECCCcEEeceEEC
Q 030076           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAV---------LGANVCIGSGTVVG----PAVTIGQSTNIGFNVALSNCIIG  109 (183)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~---------ig~~~~I~~~~~I~----~~~~Ig~~~~Ig~~~~i~~~~I~  109 (183)
                      +..+.+|.+++.+.+++.|++++.|+++++         ||+++.|+++|+|+    .+++|++++.|++++.|.+++|+
T Consensus        11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg   90 (192)
T TIGR02287        11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVG   90 (192)
T ss_pred             CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEEC
Confidence            344455555555555555555555554443         34566666666663    23566666666666666666666


Q ss_pred             CCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       110 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      ++|.|+.++.+.+                    ++.||+++.|++++.+.++
T Consensus        91 ~~~~IG~ga~I~~--------------------g~~IG~~s~Vgags~V~~~  122 (192)
T TIGR02287        91 RNALVGMNAVVMD--------------------GAVIGENSIVAASAFVKAG  122 (192)
T ss_pred             CCCEECCCcccCC--------------------CeEECCCCEEcCCCEECCC
Confidence            6666666666655                    5666666666666666655

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=5e-17  Score=135.07  Aligned_cols=138  Identities=24%  Similarity=0.358  Sum_probs=109.9

Q ss_pred             HHhhhhhhhHH-HhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCC
Q 030076           10 YRLTKTYKQDF-GRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA   88 (183)
Q Consensus        10 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~   88 (183)
                      |+.+...-.|+ .|+.+++.|...+...+.+. +      -..+.|-++.+.+.+.+.++.++.||-++.||.++.|. +
T Consensus       279 ~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~-~------~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~-N  350 (673)
T KOG1461|consen  279 LRSYDLVSKDIIQRWTYPLVPDINFSGNQTFS-L------ERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS-N  350 (673)
T ss_pred             cHHHHHHHHHHHHhhcccccccccCCCCceee-e------cccccccCccceehhhccccceEEecccccccCCCeee-c
Confidence            34455666776 77778888877764432221 1      11235667788888888899999999999999999996 5


Q ss_pred             CEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEE
Q 030076           89 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI  168 (183)
Q Consensus        89 ~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~I  168 (183)
                      ++||++|.||++++|.++.|+++|.||+||.|.                     .++|++++.|++++.+.+|    +++
T Consensus       351 SVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~---------------------~aii~d~v~i~~~~~l~~g----~vl  405 (673)
T KOG1461|consen  351 SVIGANCRIGSNVRIKNSFIWNNVTIGDNCRID---------------------HAIICDDVKIGEGAILKPG----SVL  405 (673)
T ss_pred             ceecCCCEecCceEEeeeeeecCcEECCCceEe---------------------eeEeecCcEeCCCcccCCC----cEE
Confidence            599999999999999999999999999999998                     7999999999999999888    777


Q ss_pred             CCCCEECCCCeE
Q 030076          169 GDHSKIDNLVQV  180 (183)
Q Consensus       169 g~~~~I~~~~~v  180 (183)
                      |.+.+++.+-++
T Consensus       406 ~~~VVv~~~~~l  417 (673)
T KOG1461|consen  406 GFGVVVGRNFVL  417 (673)
T ss_pred             eeeeEeCCCccc
Confidence            777777766554

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.71  E-value=9.6e-17  Score=123.31  Aligned_cols=98  Identities=17%  Similarity=0.262  Sum_probs=61.2

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccC-----cEECCCcEECCCCEECCCCEECCCcEECCCcEE---------eceEEC
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSK-----AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL---------SNCIIG  109 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~-----~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i---------~~~~I~  109 (183)
                      ..+..+.|++.+.+++.|++++.|.+.     +.||+++.|..++.|+++++||++|.|+.++.|         .+++|+
T Consensus        98 ~~~~rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIg  177 (269)
T TIGR00965        98 KAGFRVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIE  177 (269)
T ss_pred             cCCEEECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEEC
Confidence            445556666666666666666655543     345555555555555555555555555555555         236777


Q ss_pred             CCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       110 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      ++|+||+++.|.+                    +++||++++|+++++|.++
T Consensus       178 Dnv~IGa~a~I~~--------------------GV~IG~gavIGaGavI~~~  209 (269)
T TIGR00965       178 DNCFIGARSEIVE--------------------GVIVEEGSVISMGVFIGQS  209 (269)
T ss_pred             CCCEECCCCEEcC--------------------CCEECCCCEEeCCCEECCC
Confidence            7777777777766                    6777777777777777666

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.70  E-value=4.2e-16  Score=120.58  Aligned_cols=132  Identities=20%  Similarity=0.217  Sum_probs=81.7

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCc------EECCCcEECCCCEECC------------CCEECCCcEECCCcEE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKA------VLGANVCIGSGTVVGP------------AVTIGQSTNIGFNVAL  103 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~------~ig~~~~I~~~~~I~~------------~~~Ig~~~~Ig~~~~i  103 (183)
                      .+..+..|+|.+.|++++.|++++.|++++      .||+++.|++++.|+.            .+.||+++.|++++.|
T Consensus        13 ~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI   92 (255)
T PRK12461         13 KLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTI   92 (255)
T ss_pred             EECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEE
Confidence            344555666666666666666666555544      4455555555555543            3567788888888777


Q ss_pred             e-------ceEECCCCEECCCcEECCCCCceeeccCCcccc-CCc-eeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076          104 S-------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK-KPQ-LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI  174 (183)
Q Consensus       104 ~-------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I  174 (183)
                      .       .+.||++|.|.+++.|.++.    ...+...+. ... .+.+.||++++|+.++.+.++    ++||++++|
T Consensus        93 ~~gt~~g~~t~IG~~~~i~~~~~I~hd~----~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~----~~IG~~a~V  164 (255)
T PRK12461         93 HRGTKGGGVTRIGNDNLLMAYSHVAHDC----QIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQF----CRIGALAMM  164 (255)
T ss_pred             ecCcccCCcEEEcccceeccCcEECCCC----EECCCcEECCCCccCCceEECCCeEEeCCCEECCC----CEECCCcEE
Confidence            4       24555555555444444321    111111111 111 237899999999999999988    999999999


Q ss_pred             CCCCeEe
Q 030076          175 DNLVQVG  181 (183)
Q Consensus       175 ~~~~~v~  181 (183)
                      ++++.|.
T Consensus       165 g~gs~V~  171 (255)
T PRK12461        165 AGGSRIS  171 (255)
T ss_pred             CCCceEe
Confidence            9999885

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.70  E-value=1.1e-15  Score=109.88  Aligned_cols=110  Identities=21%  Similarity=0.297  Sum_probs=78.1

Q ss_pred             CCcEEccceEECCCcEECCCcEEccC---cEECCCcEECCCCEECCC----CEECCCcEECCCcEEeceEECCCCEECCC
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVHSK---AVLGANVCIGSGTVVGPA----VTIGQSTNIGFNVALSNCIIGDSCIIHNG  117 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~I~~~~~I~~~----~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~  117 (183)
                      ....+.+++.|++++.|++++.|.+.   +.|++++.|+++|.|...    ++|++++.|++++.+.+++|+++++|+.+
T Consensus        11 ~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~   90 (154)
T cd04650          11 PTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMG   90 (154)
T ss_pred             CCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCC
Confidence            33334444444445555555544443   477788888888877643    67888888888888888888888888888


Q ss_pred             cEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCE-ECCCC
Q 030076          118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSK-IDNLV  178 (183)
Q Consensus       118 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~-I~~~~  178 (183)
                      +.+..                    ++.|++++++++++.+.++    ..++++++ .++.+
T Consensus        91 ~~i~~--------------------~~~Ig~~~~vg~~~~v~~g----~~i~~~~v~~G~pa  128 (154)
T cd04650          91 AILLN--------------------GAKIGDHVIIGAGAVVTPG----KEIPDYSLVLGVPA  128 (154)
T ss_pred             CEEeC--------------------CCEECCCCEECCCCEECCC----cEeCCCCEEeccCc
Confidence            88876                    7888888888888888877    66777666 34433

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.70  E-value=2.7e-16  Score=130.32  Aligned_cols=161  Identities=16%  Similarity=0.114  Sum_probs=85.9

Q ss_pred             hhhhHHHhhhhhhcccchhhhhhhhhcc--------cCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC
Q 030076           15 TYKQDFGRFCNLFSTKSDIESRQQFQKW--------HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG   86 (183)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~   86 (183)
                      .+|.++.+.++++.++..+..... ..+        .....++.++++|.+++.+++++.|++++.|+ ++.|+++|.|+
T Consensus       215 ~~w~dI~t~~dl~~a~~~l~~~~~-~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~  292 (430)
T PRK14359        215 ENFMGVNSKFELAKAEEIMQERIK-KNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIE  292 (430)
T ss_pred             CEEeCCCCHHHHHHHHHHHHHHHH-HHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEe
Confidence            467777777777766433332211 111        12233455555555555666666665555544 44444444443


Q ss_pred             C----CCEECCCcEECCCcEEeceEECCCCEECCCc----------EECCCCC-ceeeccCCcccc---CCceeceEECC
Q 030076           87 P----AVTIGQSTNIGFNVALSNCIIGDSCIIHNGV----------CIGQDGF-GFFVDEHGNMLK---KPQLLNARIGN  148 (183)
Q Consensus        87 ~----~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~----------~i~~~~~-~~~~~~~~~~~~---~~~~~~~~Ig~  148 (183)
                      +    +++|++++.|++++.|.++.|+++|.|+...          .+.+--+ ++.....++...   .....++.||+
T Consensus       293 ~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~  372 (430)
T PRK14359        293 ESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGK  372 (430)
T ss_pred             ccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECC
Confidence            3    3455666666655655555555555333321          1111000 000000010000   00112589999


Q ss_pred             CCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          149 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       149 ~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++||+++.+.++    ++||++++|++++.|.
T Consensus       373 ~~~ig~~~~i~~~----~~ig~~~~i~~g~~v~  401 (430)
T PRK14359        373 NVFIGSDTQLVAP----VNIEDNVLIAAGSTVT  401 (430)
T ss_pred             CeEEcCCCEEeCC----cEECCCCEECCCCEEc
Confidence            9999999999988    9999999999999874

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.69  E-value=1.3e-15  Score=111.00  Aligned_cols=113  Identities=27%  Similarity=0.416  Sum_probs=76.8

Q ss_pred             cCCCcEEccceEECCCcEECCCcEEccCc----------EECCCcEECCCCEEC----CCCEECCCcEECCCcEEec-eE
Q 030076           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKA----------VLGANVCIGSGTVVG----PAVTIGQSTNIGFNVALSN-CI  107 (183)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~----------~ig~~~~I~~~~~I~----~~~~Ig~~~~Ig~~~~i~~-~~  107 (183)
                      +..+.+|++++.+.+++.+++++.|++++          .||+++.|++++.|+    ..+.||+++.|++++.|.+ +.
T Consensus         5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~   84 (167)
T cd00710           5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAY   84 (167)
T ss_pred             eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEE
Confidence            34444455555444444444444444443          456666666666662    2456778888888888865 88


Q ss_pred             ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      |+++|+|+.++.|.                     .+.||++++|++++.+. +    +.|++++.+++++++.
T Consensus        85 Ig~~~~Ig~~~~I~---------------------~~~Ig~~~~Ig~~s~i~-~----~~i~~~~~v~~~~~v~  132 (167)
T cd00710          85 IGDNCFIGFRSVVF---------------------NAKVGDNCVIGHNAVVD-G----VEIPPGRYVPAGAVIT  132 (167)
T ss_pred             ECCCCEECCCCEEE---------------------CCEECCCCEEcCCCEEe-C----CEeCCCCEECCCCEEc
Confidence            88888888888886                     68899999999998884 4    6777888777777764

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.69  E-value=1e-15  Score=113.60  Aligned_cols=104  Identities=16%  Similarity=0.345  Sum_probs=88.0

Q ss_pred             eEECCCcEECCCcEEccCcEECCCcEECCCCEECC---CCEECCCcEECCCcEE-----eceEECCCCEECCCcEECCCC
Q 030076           53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVCIGQDG  124 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i-----~~~~I~~~~~Ig~~~~i~~~~  124 (183)
                      ..|++++.|++++.|.+++.||++|.|+++|.|++   .++|++++.|+++|.|     .+++|++++.|++++.+.   
T Consensus         9 p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~---   85 (192)
T TIGR02287         9 PVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILH---   85 (192)
T ss_pred             CcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEc---
Confidence            34566666666777777888888888888888864   5789999999999999     468999999999999887   


Q ss_pred             CceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          125 FGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                        +++|+++++||.++++..+    ++||+++.|++++.|.
T Consensus        86 ------------------~siIg~~~~IG~ga~I~~g----~~IG~~s~Vgags~V~  120 (192)
T TIGR02287        86 ------------------GCIVGRNALVGMNAVVMDG----AVIGENSIVAASAFVK  120 (192)
T ss_pred             ------------------CCEECCCCEECCCcccCCC----eEECCCCEEcCCCEEC
Confidence                              8999999999999999888    8899999999888774

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>PLN02472 uncharacterized protein

Probab=99.69  E-value=1.1e-15  Score=117.27  Aligned_cols=99  Identities=15%  Similarity=0.236  Sum_probs=52.2

Q ss_pred             CCcEECCCcEEccCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEe-----------ceEECCCCEECCCcEECC
Q 030076           57 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALS-----------NCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        57 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~-----------~~~I~~~~~Ig~~~~i~~  122 (183)
                      ..+.|.+++.+.+++.|++++.|+.+++|++.   .+||+++.|+++|.|.           +++|+++|.|++++.+. 
T Consensus        64 ~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~-  142 (246)
T PLN02472         64 VDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLR-  142 (246)
T ss_pred             CCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEEC-
Confidence            33444444444444455555555555555432   4555555555555552           35555555555555554 


Q ss_pred             CCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          123 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                                          +++|+++++||.+++|..+    ++||++++|+++++|
T Consensus       143 --------------------~~~Igd~v~IG~~svI~~g----avIg~~~~Ig~gsvV  176 (246)
T PLN02472        143 --------------------SCTIEPECIIGQHSILMEG----SLVETHSILEAGSVL  176 (246)
T ss_pred             --------------------CeEEcCCCEECCCCEECCC----CEECCCCEECCCCEE
Confidence                                5566666666666666555    555555555555544

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.69  E-value=1.5e-15  Score=109.33  Aligned_cols=101  Identities=21%  Similarity=0.412  Sum_probs=81.2

Q ss_pred             CCCcEECCCcEEccCcEECCCcEECCCCEECC---CCEECCCcEECCCcEE-----eceEECCCCEECCCcEECCCCCce
Q 030076           56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVCIGQDGFGF  127 (183)
Q Consensus        56 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i-----~~~~I~~~~~Ig~~~~i~~~~~~~  127 (183)
                      .+++.+.+++.|.+++.||++|.|++++.|.+   .+.||++|.|+++|.|     .+++|+++++|++++.+.      
T Consensus         4 ~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~------   77 (155)
T cd04745           4 DPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILH------   77 (155)
T ss_pred             CCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEE------
Confidence            44555555566666677777777777787765   4789999999999998     568899999999999887      


Q ss_pred             eeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                     ++.||++++|++++++.++    ++||+++.|+++++|.
T Consensus        78 ---------------~~~Ig~~~~Ig~~~~I~~g----~~Ig~~~~Ig~~s~v~  112 (155)
T cd04745          78 ---------------GCTIGRNALVGMNAVVMDG----AVIGEESIVGAMAFVK  112 (155)
T ss_pred             ---------------CCEECCCCEECCCCEEeCC----CEECCCCEECCCCEeC
Confidence                           7899999999999999988    8888888888887763

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.68  E-value=1.5e-15  Score=107.49  Aligned_cols=76  Identities=22%  Similarity=0.250  Sum_probs=51.0

Q ss_pred             EECCCcEECCCcEE-eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEE
Q 030076           90 TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI  168 (183)
Q Consensus        90 ~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~I  168 (183)
                      .|++++.|+.++.| .+++|+++|.|++++.++...            +.....+++|+++++|++++++.++    ++|
T Consensus        33 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~------------~~~~~~~v~Ig~~~~Ig~~a~I~~g----v~I   96 (139)
T cd03350          33 YVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVL------------EPLQATPVIIEDDVFIGANCEVVEG----VIV   96 (139)
T ss_pred             EECCCeEEcCCCEECCCCEECCCCEECCCCEECCcc------------cccccCCeEECCCCEECCCCEECCC----CEE
Confidence            33333444444443 235677777777777776410            0012237999999999999999988    888


Q ss_pred             CCCCEECCCCeEe
Q 030076          169 GDHSKIDNLVQVG  181 (183)
Q Consensus       169 g~~~~I~~~~~v~  181 (183)
                      |+++.|+++++|.
T Consensus        97 g~~~~Ig~g~~V~  109 (139)
T cd03350          97 GKGAVLAAGVVLT  109 (139)
T ss_pred             CCCCEEcCCCEEc
Confidence            8888888888874

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>PLN02472 uncharacterized protein

Probab=99.68  E-value=1.1e-15  Score=117.35  Aligned_cols=111  Identities=20%  Similarity=0.206  Sum_probs=90.5

Q ss_pred             hcccCCCcEEccceEECCCcEECCCcEEccCcE---------ECCCcEECCCCEEC----------CCCEECCCcEECCC
Q 030076           40 QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAV---------LGANVCIGSGTVVG----------PAVTIGQSTNIGFN  100 (183)
Q Consensus        40 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~---------ig~~~~I~~~~~I~----------~~~~Ig~~~~Ig~~  100 (183)
                      .+.+....++.+++.+.+++.|++++.|+++++         ||+++.|+++|+|+          ..++|+++|.|+++
T Consensus        59 ~p~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~  138 (246)
T PLN02472         59 VPKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAY  138 (246)
T ss_pred             CCccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCC
Confidence            344556667777777777777777777777554         67789999999995          35799999999999


Q ss_pred             cEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076          101 VALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI  174 (183)
Q Consensus       101 ~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I  174 (183)
                      |.|.+++|+++|.||.++.|.+                    +++|++++.|++++.+.+|    ..|.++.+.
T Consensus       139 s~L~~~~Igd~v~IG~~svI~~--------------------gavIg~~~~Ig~gsvV~~g----~~Ip~g~~~  188 (246)
T PLN02472        139 SLLRSCTIEPECIIGQHSILME--------------------GSLVETHSILEAGSVLPPG----RRIPTGELW  188 (246)
T ss_pred             cEECCeEEcCCCEECCCCEECC--------------------CCEECCCCEECCCCEECCC----CEeCCCCEE
Confidence            9999999999999999999987                    8999999999999988877    666665554

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.68  E-value=5.9e-16  Score=128.91  Aligned_cols=130  Identities=24%  Similarity=0.304  Sum_probs=78.4

Q ss_pred             EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCC---
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG---  124 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~---  124 (183)
                      .+.+++.|++++.|++++.|++++.||++|.|++++.|+ ++.|+++|.|++++.|.+++|+++|.|++++.|.+..   
T Consensus       257 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~  335 (451)
T TIGR01173       257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLG  335 (451)
T ss_pred             EECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEEC
Confidence            345555666666666666666666677777777777665 3467777777766666666666555555554444310   


Q ss_pred             ----Cc-e-----eeccCCc-----------------cccC---------CceeceEECCCCEECCCcEEcCCCCCCeEE
Q 030076          125 ----FG-F-----FVDEHGN-----------------MLKK---------PQLLNARIGNHVEIGANSCIDRGSWRDTVI  168 (183)
Q Consensus       125 ----~~-~-----~~~~~~~-----------------~~~~---------~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~I  168 (183)
                          ++ +     +...+++                 ....         ....+++||++++||.++.+.++    ++|
T Consensus       336 ~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~----~~i  411 (451)
T TIGR01173       336 AGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP----VKV  411 (451)
T ss_pred             CCcEEccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECC----cEE
Confidence                00 0     0000100                 0000         00125778888888888888877    899


Q ss_pred             CCCCEECCCCeEee
Q 030076          169 GDHSKIDNLVQVGF  182 (183)
Q Consensus       169 g~~~~I~~~~~v~~  182 (183)
                      |++++|+++++|.+
T Consensus       412 g~~~~i~~g~~v~~  425 (451)
T TIGR01173       412 GDGATIAAGSTVTK  425 (451)
T ss_pred             CCCCEEccCCEECc
Confidence            99999999998853

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.68  E-value=1.3e-15  Score=113.34  Aligned_cols=101  Identities=22%  Similarity=0.362  Sum_probs=83.5

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcE---------ECCCcEECCCCEECC----CCEECCCcEECCCcEEeceEE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAV---------LGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSNCII  108 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~---------ig~~~~I~~~~~I~~----~~~Ig~~~~Ig~~~~i~~~~I  108 (183)
                      .+....+|++++.+.+++.|++++.|+++++         |++++.|+++|+|+.    +++|++++.|++++.+.+++|
T Consensus        12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vI   91 (196)
T PRK13627         12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVI   91 (196)
T ss_pred             ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEE
Confidence            4455566777777666677777777777664         566788888888855    368999999999999999999


Q ss_pred             CCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076          109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (183)
Q Consensus       109 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~  162 (183)
                      +++|+||.++.+.+                    ++.||+++.|+++++|.++.
T Consensus        92 G~~v~IG~ga~V~~--------------------g~~IG~~s~Vgags~V~~~~  125 (196)
T PRK13627         92 GRDALVGMNSVIMD--------------------GAVIGEESIVAAMSFVKAGF  125 (196)
T ss_pred             CCCCEECcCCccCC--------------------CcEECCCCEEcCCCEEeCCc
Confidence            99999999999987                    89999999999999999883

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.68  E-value=1.5e-15  Score=109.24  Aligned_cols=102  Identities=25%  Similarity=0.358  Sum_probs=81.9

Q ss_pred             ECCCcEECCCcEEccCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEec-----eEECCCCEECCCcEECCCCCc
Q 030076           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALSN-----CIIGDSCIIHNGVCIGQDGFG  126 (183)
Q Consensus        55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~~-----~~I~~~~~Ig~~~~i~~~~~~  126 (183)
                      +.++..+.+++.|.+++.||+++.|++++.|.+.   ++|+++|.|+++|.|..     ++|++++.|++++.+.     
T Consensus         3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-----   77 (154)
T cd04650           3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVH-----   77 (154)
T ss_pred             cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEE-----
Confidence            3445555555666667777777777778877654   68999999999999864     7899999999999986     


Q ss_pred             eeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          127 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                      +++|+++++|++++.+..+    ++||+++.+++++.+.
T Consensus        78 ----------------~~~Ig~~~~Ig~~~~i~~~----~~Ig~~~~vg~~~~v~  112 (154)
T cd04650          78 ----------------GAKVGNYVIVGMGAILLNG----AKIGDHVIIGAGAVVT  112 (154)
T ss_pred             ----------------CcEECCCCEEcCCCEEeCC----CEECCCCEECCCCEEC
Confidence                            7899999999999999887    8888888888887763

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.67  E-value=3.5e-16  Score=127.80  Aligned_cols=143  Identities=20%  Similarity=0.195  Sum_probs=109.5

Q ss_pred             hhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECC
Q 030076           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ   93 (183)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~   93 (183)
                      .++|.++++++.++.++..++.......+......+.+.+.+.+++.|++++.| .++.|+++|.|+.  .+. +++|++
T Consensus       238 ~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v~-~s~ig~  313 (380)
T PRK05293        238 KGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--TVE-HSVLFQ  313 (380)
T ss_pred             CCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--eec-ceEEcC
Confidence            468999999998888877766443322233333344455556666777777666 3556666666642  343 569999


Q ss_pred             CcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCE
Q 030076           94 STNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSK  173 (183)
Q Consensus        94 ~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~  173 (183)
                      +|.|+++|.|.+++|+++|.|++++.+.                     +++|++++.|++++.+..+.....+||+++.
T Consensus       314 ~~~I~~~~~i~~svi~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~  372 (380)
T PRK05293        314 GVQVGEGSVVKDSVIMPGAKIGENVVIE---------------------RAIIGENAVIGDGVIIGGGKEVITVIGENEV  372 (380)
T ss_pred             CCEECCCCEEECCEEeCCCEECCCeEEe---------------------EEEECCCCEECCCCEEcCCCceeEEEeCCCC
Confidence            9999999999999999999999999997                     8999999999999999887444488999999


Q ss_pred             ECCCCeEe
Q 030076          174 IDNLVQVG  181 (183)
Q Consensus       174 I~~~~~v~  181 (183)
                      |.+++++|
T Consensus       373 ~~~~~~~~  380 (380)
T PRK05293        373 IGVGTVIG  380 (380)
T ss_pred             CCCCcEeC
Confidence            99999876

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.67  E-value=2.6e-15  Score=116.27  Aligned_cols=104  Identities=17%  Similarity=0.269  Sum_probs=59.3

Q ss_pred             CCCcEEccceEECCCcEECCCcEEcc-----CcEECCCcEECCCCEECCCCEECCCcEECCCcEEe---------ceEEC
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHS-----KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS---------NCIIG  109 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~---------~~~I~  109 (183)
                      ..+..+.+++++++++.|++++.|.+     +++|++++.|+.++.|++++.||++|.|+.++.|.         +++|+
T Consensus       101 ~~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIg  180 (272)
T PRK11830        101 EAGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIE  180 (272)
T ss_pred             cCCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEc
Confidence            44455555556666666655555553     33344444444444444444555555555555443         35677


Q ss_pred             CCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCC
Q 030076          110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH  171 (183)
Q Consensus       110 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~  171 (183)
                      ++|+||.++.|..                    +++||++++|++++.+.++    +.|++.
T Consensus       181 Dnv~IGa~s~I~~--------------------Gv~IGdgavIgag~vV~~g----t~I~~~  218 (272)
T PRK11830        181 DNCFIGARSEVVE--------------------GVIVEEGSVLGMGVFLGQS----TKIYDR  218 (272)
T ss_pred             CCCEECCCCEEcC--------------------CCEECCCCEEcCCCEEcCC----eEECcC
Confidence            7777777776655                    6677777777777777666    555543

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.67  E-value=3.3e-15  Score=108.91  Aligned_cols=103  Identities=27%  Similarity=0.442  Sum_probs=83.5

Q ss_pred             EECCCcEECCCcEEccCcEECCCcEECCCCEECC----CCEECCCcEECCCcEEe-----ceEECCCCEECCCcEECCCC
Q 030076           54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALS-----NCIIGDSCIIHNGVCIGQDG  124 (183)
Q Consensus        54 ~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~----~~~Ig~~~~Ig~~~~i~-----~~~I~~~~~Ig~~~~i~~~~  124 (183)
                      .|++++.|.+++.|.+++.||++|.|++++.|+.    .+.||++|.|++++.|.     .+.|++++.|++++.+..  
T Consensus         4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g--   81 (167)
T cd00710           4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHG--   81 (167)
T ss_pred             EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeC--
Confidence            4555556666666666777777777777777755    46899999999999994     578999999999999986  


Q ss_pred             CceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          125 FGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                        ++.||++++|++++.+. .    ++||+++.|++++.|.
T Consensus        82 ------------------~~~Ig~~~~Ig~~~~I~-~----~~Ig~~~~Ig~~s~i~  115 (167)
T cd00710          82 ------------------PAYIGDNCFIGFRSVVF-N----AKVGDNCVIGHNAVVD  115 (167)
T ss_pred             ------------------CEEECCCCEECCCCEEE-C----CEECCCCEEcCCCEEe
Confidence                              79999999999999986 3    7888888888888874

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.67  E-value=3.5e-15  Score=107.23  Aligned_cols=100  Identities=27%  Similarity=0.450  Sum_probs=73.8

Q ss_pred             cceEECCCcEECCCcEEccC---cEECCCcEECCCCEECCC----CEECCCcEECCCcEEeceEECCCCEECCCcEECCC
Q 030076           51 QSACIDSTVLIEVGAIVHSK---AVLGANVCIGSGTVVGPA----VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD  123 (183)
Q Consensus        51 ~~~~i~~~~~i~~~~~i~~~---~~ig~~~~I~~~~~I~~~----~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~  123 (183)
                      ++.++++++.|++++.|.++   ++||+++.|++++.|...    ++|++++.|+.+|.+.+++|+++++|++++.+.. 
T Consensus        16 g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~-   94 (153)
T cd04645          16 GDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILD-   94 (153)
T ss_pred             EeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcC-
Confidence            33444455555555544432   367777777777777653    6888888888888888888888899888888876 


Q ss_pred             CCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076          124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI  174 (183)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I  174 (183)
                                         ++.|+++++|++++.+.++    +.+++++.+
T Consensus        95 -------------------~~~ig~~~~ig~~~~v~~~----~~i~~~~~~  122 (153)
T cd04645          95 -------------------GAVIGKGSIVAAGSLVPPG----KVIPPGSLV  122 (153)
T ss_pred             -------------------CCEECCCCEECCCCEECCC----CEeCCCCEE
Confidence                               7888888888888888776    667766666

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.67  E-value=3.8e-15  Score=111.73  Aligned_cols=121  Identities=21%  Similarity=0.257  Sum_probs=91.9

Q ss_pred             ECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCc--------
Q 030076           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG--------  126 (183)
Q Consensus        55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~--------  126 (183)
                      +++++.|+.++.|. ++.||+++.|+++|.|. +++||+++.|++++.+.+++||++|.|++++.+....+.        
T Consensus         5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~   82 (204)
T TIGR03308         5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHH   82 (204)
T ss_pred             cCCCCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccc
Confidence            34555666666664 47888888888999996 569999999999999999999999999999999864211        


Q ss_pred             eeecc---------CCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          127 FFVDE---------HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       127 ~~~~~---------~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ++...         ...........+++||++++||.++++.+|    ++||++++|+++++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~g----v~Ig~~~~I~~gs~v~  142 (204)
T TIGR03308        83 FTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPG----VTIGNGAVIAAGAVVT  142 (204)
T ss_pred             cccccccccccccccccccccccCCCeEECCCCEECCCCEECCC----CEECCCCEECCCCEEC
Confidence            00000         000001113358999999999999999988    9999999999999874

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.66  E-value=1e-15  Score=114.21  Aligned_cols=116  Identities=27%  Similarity=0.270  Sum_probs=62.5

Q ss_pred             EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------ceEECCCCEE
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDSCII  114 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------~~~I~~~~~I  114 (183)
                      .|.|++.|++++.|++-|.|++++.|++++.|+++++|.+.++||.++.|-+.+.|.             ..+||++|.|
T Consensus        11 iIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~I   90 (260)
T COG1043          11 IIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTI   90 (260)
T ss_pred             eeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeE
Confidence            333444444444444444444444444444444444444445555555555555551             4667777777


Q ss_pred             CCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       115 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      ...++|....             ....+-+.||+++++-+.+-|..    +|+||+++++.+++.+
T Consensus        91 RE~vTi~~GT-------------~~g~g~T~IGdnnl~May~HVAH----DC~iGn~~ilaNnatL  139 (260)
T COG1043          91 REFVTIHRGT-------------VQGGGVTRIGDNNLIMAYAHVAH----DCVIGNNCILANNATL  139 (260)
T ss_pred             eeEEEEeccc-------------cCCceeEEECCCCEEEEeeeeec----cceecCcEEEecCCeE
Confidence            7777776420             01112466666666666666653    3777777777777766

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.66  E-value=3.6e-15  Score=116.07  Aligned_cols=80  Identities=26%  Similarity=0.315  Sum_probs=63.2

Q ss_pred             cCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------ceEEC
Q 030076           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIG  109 (183)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------~~~I~  109 (183)
                      +.....|++.+.|++++.|++.+.|++++.||++|.|++++.|.++++||++|.|++++.|.             .++||
T Consensus         5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG   84 (262)
T PRK05289          5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG   84 (262)
T ss_pred             cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence            34555666677777777777777777777777778888888888788889999999998885             48899


Q ss_pred             CCCEECCCcEECC
Q 030076          110 DSCIIHNGVCIGQ  122 (183)
Q Consensus       110 ~~~~Ig~~~~i~~  122 (183)
                      ++|.|+++++|..
T Consensus        85 ~~~~I~e~~~I~~   97 (262)
T PRK05289         85 DNNTIREFVTINR   97 (262)
T ss_pred             CCCEECCCeEEec
Confidence            9999999999975

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.65  E-value=4.6e-15  Score=123.93  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=27.0

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .++||++|+||.++.+.++    +.||++++|++++.|.
T Consensus       394 ~~~Igd~~~ig~~~~i~~~----~~ig~~~~i~~gs~v~  428 (456)
T PRK09451        394 KTIIGDDVFVGSDTQLVAP----VTVGKGATIGAGTTVT  428 (456)
T ss_pred             CCEECCCcEECCCCEEeCC----cEECCCCEECCCCEEc
Confidence            4667777777777777776    8888888888888874

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.65  E-value=1.8e-15  Score=127.13  Aligned_cols=131  Identities=16%  Similarity=0.201  Sum_probs=91.7

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCC----
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG----  124 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~----  124 (183)
                      +.++++|++++.|++++.|.+++.|+++|.|+++|.|++ ++|+++|.|++++.|.+++|++++.|++++.+....    
T Consensus       267 i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~-svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~  345 (481)
T PRK14358        267 IEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTD-SVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGE  345 (481)
T ss_pred             ccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEee-eEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECC
Confidence            355666777777777777777788888888888888854 589999999999999888888888887777665421    


Q ss_pred             ---Cce-ee-----ccCCccc-cCCceeceEECCCCEECCCcEEcCCC---CCCeEECCCCEECCCCeE
Q 030076          125 ---FGF-FV-----DEHGNML-KKPQLLNARIGNHVEIGANSCIDRGS---WRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       125 ---~~~-~~-----~~~~~~~-~~~~~~~~~Ig~~~~Ig~~~~v~~g~---~~~~~Ig~~~~I~~~~~v  180 (183)
                         ++. ..     ..++.+. +....+.++||++|.||+++++....   .+.++||+++.|++++.+
T Consensus       346 ~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i  414 (481)
T PRK14358        346 GVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTL  414 (481)
T ss_pred             CCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEE
Confidence               111 11     1112211 12234679999999999999886432   345788888888888766

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.65  E-value=4.1e-15  Score=106.89  Aligned_cols=101  Identities=30%  Similarity=0.403  Sum_probs=81.7

Q ss_pred             CCCcEECCCcEEccCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEec-----eEECCCCEECCCcEECCCCCce
Q 030076           56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALSN-----CIIGDSCIIHNGVCIGQDGFGF  127 (183)
Q Consensus        56 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~~-----~~I~~~~~Ig~~~~i~~~~~~~  127 (183)
                      ++++.|++++.|.+++.|++++.|++++.|.++   ++||+++.|+++|.|..     ++|++++.|++++.+.      
T Consensus         3 ~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~------   76 (153)
T cd04645           3 DPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLH------   76 (153)
T ss_pred             cCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEe------
Confidence            455566666666667777888888888877654   58999999999999976     5999999999999997      


Q ss_pred             eeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                     +++|+++++|++++.+.++    ++|++++.|++++.+.
T Consensus        77 ---------------~~~Ig~~~~Ig~~~~v~~~----~~ig~~~~ig~~~~v~  111 (153)
T cd04645          77 ---------------GCTIGDNCLIGMGAIILDG----AVIGKGSIVAAGSLVP  111 (153)
T ss_pred             ---------------eeEECCCCEECCCCEEcCC----CEECCCCEECCCCEEC
Confidence                           7889999999999999877    7788888887777663

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.65  E-value=3.9e-15  Score=114.46  Aligned_cols=102  Identities=25%  Similarity=0.248  Sum_probs=65.1

Q ss_pred             CcEEccCcEECCCcEECCCCEEC-----CCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCcccc
Q 030076           64 GAIVHSKAVLGANVCIGSGTVVG-----PAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK  137 (183)
Q Consensus        64 ~~~i~~~~~ig~~~~I~~~~~I~-----~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~  137 (183)
                      ++++.|++.+++++.|+++++|.     .++.||+++.|..++.|. ++.||++|+|.+++.|+..            +.
T Consensus       100 ~~rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~------------~e  167 (269)
T TIGR00965       100 GFRVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV------------LE  167 (269)
T ss_pred             CEEECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCC------------cc
Confidence            44444444444444444444443     334555555555555553 3556666666666655420            11


Q ss_pred             CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          138 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       138 ~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ..+..+++|+++|+||++++|.+|    ++||++|+|+++++|+
T Consensus       168 p~~~~~ViIgDnv~IGa~a~I~~G----V~IG~gavIGaGavI~  207 (269)
T TIGR00965       168 PLQANPTIIEDNCFIGARSEIVEG----VIVEEGSVISMGVFIG  207 (269)
T ss_pred             cCCCCCeEECCCCEECCCCEEcCC----CEECCCCEEeCCCEEC
Confidence            123348999999999999999998    8888888888888884

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.65  E-value=1.3e-15  Score=113.72  Aligned_cols=115  Identities=30%  Similarity=0.371  Sum_probs=91.6

Q ss_pred             EECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCccccC
Q 030076           60 LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK  138 (183)
Q Consensus        60 ~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~  138 (183)
                      .|++.+.|++++.|+++|.||+.|+|++++.|++++.|+++++|. .+.||+++.|-+.+.|+.+        ++.....
T Consensus         5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~--------pQdlKyk   76 (260)
T COG1043           5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGED--------PQDLKYK   76 (260)
T ss_pred             ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCC--------CcccccC
Confidence            455556666667777788888888888888888899999999985 5789999999999999974        2332333


Q ss_pred             CceeceEECCCCEECCCcEEcCCCC---CCeEECCCCEECCCCeEee
Q 030076          139 PQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       139 ~~~~~~~Ig~~~~Ig~~~~v~~g~~---~~~~Ig~~~~I~~~~~v~~  182 (183)
                      .+...++||+++.|.+.+++..|+.   ..|.||++..+++.+.|.|
T Consensus        77 ge~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAH  123 (260)
T COG1043          77 GEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAH  123 (260)
T ss_pred             CCceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeec
Confidence            4456899999999999999999983   4589999998888888865

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.65  E-value=2.9e-15  Score=125.97  Aligned_cols=68  Identities=19%  Similarity=0.320  Sum_probs=37.7

Q ss_pred             cEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECC
Q 030076           47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHN  116 (183)
Q Consensus        47 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~  116 (183)
                      .++.++++|++++.|++++.|.++++||++|.|++++.|+ +++|+++|.|+. +.+.+++|++++.|++
T Consensus       266 ~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~  333 (482)
T PRK14352        266 TWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVR-THGSESEIGAGATVGP  333 (482)
T ss_pred             EEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEe-cCEECCCCEEee-eeeecCEEcCCCEECC
Confidence            3455556666666666666666666666666666666664 335555555432 3344444444444433

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.64  E-value=6e-15  Score=109.93  Aligned_cols=94  Identities=33%  Similarity=0.501  Sum_probs=61.0

Q ss_pred             CcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCccccCCcee
Q 030076           64 GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLL  142 (183)
Q Consensus        64 ~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~  142 (183)
                      ++.+.+++.|++++.|+++++|+++++|+++|.|+.++.|. ++.|+++++|++++.+..                    
T Consensus        93 ~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~--------------------  152 (201)
T TIGR03570        93 SAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSG--------------------  152 (201)
T ss_pred             CeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeC--------------------
Confidence            33444444555555555555555555555556665555553 466777777777777765                    


Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .+.|+++++|++++++.++    ++||++++|++++++.
T Consensus       153 ~~~ig~~~~ig~~~~v~~~----~~i~~~~~i~~~~~v~  187 (201)
T TIGR03570       153 GVVIGEGVFIGAGATIIQG----VTIGAGAIVGAGAVVT  187 (201)
T ss_pred             CcEECCCCEECCCCEEeCC----CEECCCCEECCCCEEC
Confidence            6777778888888777776    7777777777777763

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.63  E-value=6.3e-15  Score=101.33  Aligned_cols=20  Identities=15%  Similarity=0.101  Sum_probs=9.7

Q ss_pred             EeceEECCCCEECCCcEECC
Q 030076          103 LSNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus       103 i~~~~I~~~~~Ig~~~~i~~  122 (183)
                      +.+++|+++|+|++++.+.+
T Consensus        65 ~~~~~Ig~~~~Ig~~~~v~~   84 (119)
T cd03358          65 LKGTTVKRGASIGANATILP   84 (119)
T ss_pred             cCCcEECCCcEECcCCEEeC
Confidence            34444555555555555543

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.63  E-value=1.1e-14  Score=111.15  Aligned_cols=99  Identities=23%  Similarity=0.433  Sum_probs=77.3

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe---------ceEECCCCEE
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS---------NCIIGDSCII  114 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~---------~~~I~~~~~I  114 (183)
                      ..+..+.++++|++++.|+.++.|.+++.||++|.|++++.|.++++|+++|.|+.++.|.         .++|+++|+|
T Consensus        90 ~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~I  169 (231)
T TIGR03532        90 EPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLI  169 (231)
T ss_pred             CCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEE
Confidence            3344444455555555555566666667777777777777777788999999999999996         4889999999


Q ss_pred             CCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076          115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (183)
Q Consensus       115 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~  162 (183)
                      +.++.+.+                    ++.||++++|++++++.+..
T Consensus       170 G~gsvI~~--------------------g~~Ig~~~~IgagsvV~~di  197 (231)
T TIGR03532       170 GANAVILE--------------------GVRVGKGAVVAAGAIVTEDV  197 (231)
T ss_pred             CCCCEEcC--------------------CCEECCCCEECCCCEEcccc
Confidence            99999987                    89999999999999998664

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.63  E-value=1.1e-14  Score=121.18  Aligned_cols=127  Identities=18%  Similarity=0.204  Sum_probs=81.0

Q ss_pred             EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCc
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFG  126 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~  126 (183)
                      .+++.+.|++++.|++++.|++++.|+++|.|++++.|. +++||++|.|++++.|. +++|+++|.|++++.+.+    
T Consensus       264 ~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~----  338 (446)
T PRK14353        264 FFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLE-GAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKN----  338 (446)
T ss_pred             EECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEe-ccEECCCcEECCCeEEeccceecCCeEEcCceEEec----
Confidence            455556666666666666666666666666666666663 46888888888888886 688888888888877742    


Q ss_pred             eeeccCCcc-ccCCceeceEECCCCEECCCcEEcCCC---CCCeEECCCCEECCCCeE
Q 030076          127 FFVDEHGNM-LKKPQLLNARIGNHVEIGANSCIDRGS---WRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       127 ~~~~~~~~~-~~~~~~~~~~Ig~~~~Ig~~~~v~~g~---~~~~~Ig~~~~I~~~~~v  180 (183)
                       ....+... ......++++||++|.|++++++....   .++++||+++.|++++.|
T Consensus       339 -~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i  395 (446)
T PRK14353        339 -AKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSAL  395 (446)
T ss_pred             -eEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEE
Confidence             11111221 122334478899999999887662110   123666666666666655

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.63  E-value=1.3e-14  Score=107.31  Aligned_cols=76  Identities=32%  Similarity=0.515  Sum_probs=41.1

Q ss_pred             CCCEECCCCEECCCcEECCCcEE-eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEc
Q 030076           81 SGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID  159 (183)
Q Consensus        81 ~~~~I~~~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~  159 (183)
                      ++++|++++.||++|.|++++.| .++.|+++|+|++++.+..                    ++.||++++|++++++.
T Consensus       107 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~--------------------~~~ig~~~~ig~~~~v~  166 (197)
T cd03360         107 AGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSG--------------------GVTIGEGAFIGAGATII  166 (197)
T ss_pred             CCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcC--------------------CcEECCCCEECCCCEEc
Confidence            33333333333333444444443 2344556666666666654                    56666666666666666


Q ss_pred             CCCCCCeEECCCCEECCCCeE
Q 030076          160 RGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       160 ~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      ++    ++||+++.|+++++|
T Consensus       167 ~~----~~ig~~~~v~~~~~v  183 (197)
T cd03360         167 QG----VTIGAGAIIGAGAVV  183 (197)
T ss_pred             CC----CEECCCCEECCCCEE
Confidence            55    666666666666655

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.62  E-value=2.6e-15  Score=125.35  Aligned_cols=76  Identities=13%  Similarity=0.093  Sum_probs=61.8

Q ss_pred             CcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076           46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        46 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~  122 (183)
                      ...+++++.|++++.|..++.|.+++.||++|.|+++|.|+ +++|+++|.|+++|.|.+++|+++|.|++++.|.+
T Consensus       263 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~  338 (456)
T PRK14356        263 SVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLR-DAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRP  338 (456)
T ss_pred             cEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEE-eeEECCCCEEeeeEEEcccceecccEECCceEECC
Confidence            34455666666666666667777778888888888888885 56999999999999999999999999999998875

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=1.6e-15  Score=121.27  Aligned_cols=141  Identities=17%  Similarity=0.116  Sum_probs=93.3

Q ss_pred             hhhhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEE
Q 030076           12 LTKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI   91 (183)
Q Consensus        12 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~I   91 (183)
                      .+.+||+|++++..||.++++++...+...+...+..|+......|++++..++.+ .++.|+++|.|..  .|. +++|
T Consensus       239 ~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~-nSVL  314 (393)
T COG0448         239 EFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVE-NSVL  314 (393)
T ss_pred             eccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEE-eeEE
Confidence            45679999999999999999999866655666666666666666666666555543 3555555555532  342 3466


Q ss_pred             CCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC---------
Q 030076           92 GQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS---------  162 (183)
Q Consensus        92 g~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~---------  162 (183)
                      +.++.|+++|.|.+|+|..+|.||.+|.+.                     .++|.++|.|++|+++....         
T Consensus       315 ~~~v~I~~gs~i~~svim~~~~IG~~~~l~---------------------~aIIDk~v~I~~g~~i~~~~~~~d~~~~~  373 (393)
T COG0448         315 FRGVRIGKGSVIENSVIMPDVEIGEGAVLR---------------------RAIIDKNVVIGEGVVIGGDKPEEDRKRFR  373 (393)
T ss_pred             ecCeEECCCCEEEeeEEeCCcEECCCCEEE---------------------EEEeCCCcEeCCCcEEcCCcchhcccccc
Confidence            677777777777777777777777777776                     56666666666666665553         


Q ss_pred             --CCCeEECCCCEECCC
Q 030076          163 --WRDTVIGDHSKIDNL  177 (183)
Q Consensus       163 --~~~~~Ig~~~~I~~~  177 (183)
                        ...++|+++..+..+
T Consensus       374 ~~~~ivVv~k~~~~~~~  390 (393)
T COG0448         374 SEEGIVVVPKGMVIKLD  390 (393)
T ss_pred             ccCCcEEEecccEeccc
Confidence              344556665555443

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.61  E-value=2.2e-14  Score=119.61  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=31.0

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++||++++||+++++.++    ++||+++.|++++.|.
T Consensus       390 ~~~Ig~~~~iG~~~~i~~~----~~ig~~~~v~~~~~v~  424 (450)
T PRK14360        390 RTVIGDRSKTGANSVLVAP----ITLGEDVTVAAGSTIT  424 (450)
T ss_pred             CcEeCCCeEeCCCCEEeCC----cEECCCCEECCCCEEC
Confidence            6889999999999999888    9999999999999884

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.61  E-value=3.7e-14  Score=102.95  Aligned_cols=80  Identities=19%  Similarity=0.309  Sum_probs=72.5

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~  121 (183)
                      ....+..+.+++++++++.|++++.|.++++|+++|.|++++.|+++++|+++|.|++++.|.+++|++++.|++++.+.
T Consensus         7 ~~~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~   86 (163)
T cd05636           7 TVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVG   86 (163)
T ss_pred             ccCCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEe
Confidence            34555678888999999999999999999999999999999999988999999999999999999999999999988876

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.61  E-value=4.8e-14  Score=105.04  Aligned_cols=95  Identities=28%  Similarity=0.484  Sum_probs=59.8

Q ss_pred             EEccceEECCCcEECCCcEEcc------CcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEE
Q 030076           48 IFHQSACIDSTVLIEVGAIVHS------KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCI  120 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~------~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i  120 (183)
                      .+.+.+.+.+++.|++++.|++      ++.|+++|.|++++.|..++.|++++.|+.++.+. ++.|+++|+|++++.+
T Consensus        89 ~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v  168 (201)
T TIGR03570        89 LIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATI  168 (201)
T ss_pred             EecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEE
Confidence            4444555555555554544444      44555555555555555555666666666666664 5777777777777777


Q ss_pred             CCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076          121 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (183)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~  162 (183)
                      .+                    ++.|+++++|++++++....
T Consensus       169 ~~--------------------~~~i~~~~~i~~~~~v~~~~  190 (201)
T TIGR03570       169 IQ--------------------GVTIGAGAIVGAGAVVTKDI  190 (201)
T ss_pred             eC--------------------CCEECCCCEECCCCEECCcC
Confidence            65                    78888888888888887653

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.60  E-value=4.4e-14  Score=99.11  Aligned_cols=99  Identities=18%  Similarity=0.253  Sum_probs=57.8

Q ss_pred             EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC----CCCEECCCcEECCCcEEeceEECCCCEECCCcEECCC
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG----PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD  123 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~----~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~  123 (183)
                      .+.|.+++...+.|++++.|.+++.+..++.|++++.|.    .+++|+++|.|++++.|. +            .+.. 
T Consensus         3 ~i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~-~------------~l~G-   68 (147)
T cd04649           3 RIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM-G------------TLSG-   68 (147)
T ss_pred             EecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE-E------------ECCC-
Confidence            345556666666666666666666666666666666665    444555555555544443 1            1111 


Q ss_pred             CCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                     ....++.||++++||+++.|  +    +.||++++|+++++|.
T Consensus        69 ---------------~~~~pV~IG~~~~IG~ga~I--g----v~IG~~~vIGaGsvV~  105 (147)
T cd04649          69 ---------------GGNNVISIGKRCLLGANSGI--G----ISLGDNCIVEAGLYVT  105 (147)
T ss_pred             ---------------CcccCEEECCCCEECCCCEE--e----EEECCCCEECCCCEEe
Confidence                           00114777777777777777  4    6777777777777663

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.60  E-value=3.8e-14  Score=102.70  Aligned_cols=100  Identities=23%  Similarity=0.372  Sum_probs=77.3

Q ss_pred             eEECCCcEECCCcEEccC---cEECCCcEECCCCEECC------------CCEECCCcEECCCcEEeceEECCCCEECCC
Q 030076           53 ACIDSTVLIEVGAIVHSK---AVLGANVCIGSGTVVGP------------AVTIGQSTNIGFNVALSNCIIGDSCIIHNG  117 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i~~~---~~ig~~~~I~~~~~I~~------------~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~  117 (183)
                      .++++.+.|++++.|.++   +.||++|.|++++.|.+            .++|++++.|++++.+.+++|++++.|+++
T Consensus        22 I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~  101 (161)
T cd03359          22 IVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKN  101 (161)
T ss_pred             EEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCC
Confidence            445555555555555543   46777777777777754            458999999999999999999999999999


Q ss_pred             cEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECC
Q 030076          118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDN  176 (183)
Q Consensus       118 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~  176 (183)
                      +.|++                    ++.|+++++|++++++.++    +.|+++++++.
T Consensus       102 ~~Ig~--------------------~~~I~~~~~i~~g~~V~~~----~~i~~~~vv~g  136 (161)
T cd03359         102 CVIGR--------------------RCIIKDCVKILDGTVVPPD----TVIPPYSVVSG  136 (161)
T ss_pred             CEEcC--------------------CCEECCCcEECCCCEECCC----CEeCCCCEEec
Confidence            99987                    7888888888888888877    77777777763

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.60  E-value=4.9e-14  Score=104.17  Aligned_cols=95  Identities=31%  Similarity=0.515  Sum_probs=59.3

Q ss_pred             cEEccceEECCCcEECCCcEEccCcEECCCcEECC------CCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcE
Q 030076           47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGS------GTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVC  119 (183)
Q Consensus        47 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~------~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~  119 (183)
                      ..+++.+.+.+++.++.++.|.++++|++++.||+      ++.|+.++.|+++|.|+.++.+. +++|+++|+|+.++.
T Consensus        85 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~  164 (197)
T cd03360          85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGAT  164 (197)
T ss_pred             eEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCE
Confidence            34455555555555555555555555554444444      44444445555555555555553 467777777777777


Q ss_pred             ECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       120 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      +.+                    ++.|++++++++++++.+.
T Consensus       165 v~~--------------------~~~ig~~~~v~~~~~v~~~  186 (197)
T cd03360         165 IIQ--------------------GVTIGAGAIIGAGAVVTKD  186 (197)
T ss_pred             EcC--------------------CCEECCCCEECCCCEEcCC
Confidence            775                    7888888888888888765

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.59  E-value=2.6e-14  Score=119.07  Aligned_cols=35  Identities=23%  Similarity=0.171  Sum_probs=29.5

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++||++++||.++++.++    ++||+++.|++++.|.
T Consensus       383 ~~~Igd~~~ig~~~~i~~g----v~Ig~~~~i~ag~~v~  417 (448)
T PRK14357        383 PTFIEDGAFIGSNSSLVAP----VRIGKGALIGAGSVIT  417 (448)
T ss_pred             CcEECCCCEECCCCEEeCC----cEECCCCEEcCCCEEC
Confidence            5788888888888888877    8899999999998874

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.59  E-value=2.6e-14  Score=110.72  Aligned_cols=104  Identities=24%  Similarity=0.269  Sum_probs=65.7

Q ss_pred             CCCcEEccCcEECCCcEECCCCEEC-----CCCEECCCcEECCCcEEec-eEECCCCEECCCcEECCCCCceeeccCCcc
Q 030076           62 EVGAIVHSKAVLGANVCIGSGTVVG-----PAVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCIGQDGFGFFVDEHGNM  135 (183)
Q Consensus        62 ~~~~~i~~~~~ig~~~~I~~~~~I~-----~~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~  135 (183)
                      ..+++|.++++|++++.|++++.|.     .++.|++++.|+.++.|.+ +.||++|+|++++.|...            
T Consensus       101 ~~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~------------  168 (272)
T PRK11830        101 EAGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV------------  168 (272)
T ss_pred             cCCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCC------------
Confidence            3444555555555555555555544     2334555555555555432 456666666666666531            


Q ss_pred             ccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          136 LKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       136 ~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ....+..+++|+++|+||+++++..|    ++||++++|+++++|+
T Consensus       169 ~~~~~~~~viIgDnv~IGa~s~I~~G----v~IGdgavIgag~vV~  210 (272)
T PRK11830        169 LEPLQANPVIIEDNCFIGARSEVVEG----VIVEEGSVLGMGVFLG  210 (272)
T ss_pred             ccccCcCCeEEcCCCEECCCCEEcCC----CEECCCCEEcCCCEEc
Confidence            01112237999999999999999988    8888888888888885

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.58  E-value=6.2e-14  Score=98.38  Aligned_cols=93  Identities=19%  Similarity=0.293  Sum_probs=82.1

Q ss_pred             CCcEEccceEECCCcEECCCcEEccCcEECCCcEEC----CCCEECCCCEECCCcEECCCcEE-ec----eEECCCCEEC
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIG----SGTVVGPAVTIGQSTNIGFNVAL-SN----CIIGDSCIIH  115 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~----~~~~I~~~~~Ig~~~~Ig~~~~i-~~----~~I~~~~~Ig  115 (183)
                      ++..+.+.++|++++.|.+++.+..++.||+++.|.    .++.|+.++.|++++.|.  +.+ ..    +.|+++|+||
T Consensus         6 ~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~--~~l~G~~~~pV~IG~~~~IG   83 (147)
T cd04649           6 DADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM--GTLSGGGNNVISIGKRCLLG   83 (147)
T ss_pred             CCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE--EECCCCcccCEEECCCCEEC
Confidence            456678888999999999999999999999999988    999999999999999998  555 23    7899999999


Q ss_pred             CCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      +++.|                      ++.||+++.||+|++|.++
T Consensus        84 ~ga~I----------------------gv~IG~~~vIGaGsvV~k~  107 (147)
T cd04649          84 ANSGI----------------------GISLGDNCIVEAGLYVTAG  107 (147)
T ss_pred             CCCEE----------------------eEEECCCCEECCCCEEeCC
Confidence            99999                      4789999999999999888

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.58  E-value=7.6e-14  Score=95.88  Aligned_cols=98  Identities=24%  Similarity=0.287  Sum_probs=58.1

Q ss_pred             CcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCcccc
Q 030076           58 TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK  137 (183)
Q Consensus        58 ~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~  137 (183)
                      ++.|++++.|++++.|++++.|++++.|.+.++|+++|.|++++.+.+..+ .+..+..++.+                 
T Consensus         4 ~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~-----------------   65 (119)
T cd03358           4 NCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWEL-----------------   65 (119)
T ss_pred             CCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-Ccccccccccc-----------------
Confidence            334444444444444444444444444444445555555555544443322 12222222333                 


Q ss_pred             CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          138 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       138 ~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                          .+++|+++++|++++++.++    ++|++++.|++++.+.
T Consensus        66 ----~~~~Ig~~~~Ig~~~~v~~~----~~ig~~~~i~~~~~v~  101 (119)
T cd03358          66 ----KGTTVKRGASIGANATILPG----VTIGEYALVGAGAVVT  101 (119)
T ss_pred             ----CCcEECCCcEECcCCEEeCC----cEECCCCEEccCCEEe
Confidence                38999999999999999887    8999999999988874

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.58  E-value=5.9e-14  Score=117.99  Aligned_cols=133  Identities=17%  Similarity=0.208  Sum_probs=78.5

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcE-----ECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCC
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAV-----LGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNG  117 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~-----ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~  117 (183)
                      +.+..|++++.|.+++.|++++.|++++.     |+++|.|++++.|. +++|++++.|++++.+. ++.|++++.|+++
T Consensus       274 g~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~-~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~  352 (481)
T PRK14358        274 GRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLE-GAEVGAGSDVGPFARLRPGTVLGEGVHIGNF  352 (481)
T ss_pred             CCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceec-CCeEeCceEECCccEEcCCcEECCCCEECCC
Confidence            34555666666655555666666665543     45555555555553 34666666666666663 4556666666664


Q ss_pred             cEECCCCC------------ceeeccCCcccc---------CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECC
Q 030076          118 VCIGQDGF------------GFFVDEHGNMLK---------KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDN  176 (183)
Q Consensus       118 ~~i~~~~~------------~~~~~~~~~~~~---------~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~  176 (183)
                      +.+.+..+            +.....+++...         .....++.||++++||+++.+.++    ++||+++.|++
T Consensus       353 ~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~----~~Ig~~~~i~~  428 (481)
T PRK14358        353 VETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAP----RVVGDAAFIAA  428 (481)
T ss_pred             EEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCC----cEECCCCEECC
Confidence            43322100            111111111110         011236899999999999999988    99999999999


Q ss_pred             CCeEe
Q 030076          177 LVQVG  181 (183)
Q Consensus       177 ~~~v~  181 (183)
                      ++.|.
T Consensus       429 gs~v~  433 (481)
T PRK14358        429 GSAVH  433 (481)
T ss_pred             CCEEe
Confidence            99874

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=2.1e-14  Score=115.33  Aligned_cols=106  Identities=22%  Similarity=0.307  Sum_probs=68.3

Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCce-eeccCCccc---cCCceeceEECC
Q 030076           73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF-FVDEHGNML---KKPQLLNARIGN  148 (183)
Q Consensus        73 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~-~~~~~~~~~---~~~~~~~~~Ig~  148 (183)
                      |++++.||+.+++++++.|++++.||..+.++++.|++++-.+.=+++++...+. .-.-.++..   ....+..++||+
T Consensus       323 vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd  402 (460)
T COG1207         323 VGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGD  402 (460)
T ss_pred             ecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecC
Confidence            4556666666677777777777777777777666666654444444444321110 000011111   122445899999


Q ss_pred             CCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          149 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       149 ~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      +++||+++.+-.    ++.||+++.|++||+|.+
T Consensus       403 ~vFiGSns~LVA----PV~IGd~a~iaAGStIT~  432 (460)
T COG1207         403 NVFIGSNSQLVA----PVTIGDGATIAAGSTITK  432 (460)
T ss_pred             CcEEccCCcEEe----eEEecCCcEEcccceEcc
Confidence            999999998764    399999999999999964

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.57  E-value=2.9e-14  Score=115.45  Aligned_cols=132  Identities=23%  Similarity=0.337  Sum_probs=79.3

Q ss_pred             hhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECC
Q 030076           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ   93 (183)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~   93 (183)
                      .++|.+++++++++.++..++.... ..+.  +  +.+.+.+.+++.|++++.| +++.|.+++.|+++|.|+ +++|++
T Consensus       215 ~g~w~digt~~dl~~a~~~ll~~~~-~~~~--~--i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~-~~~i~~  287 (353)
T TIGR01208       215 TGWWKDTGKPEDLLDANRLILDEVE-REVQ--G--VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE-NSYIGP  287 (353)
T ss_pred             CcEEEeCCCHHHHHHHHHHHHhhcc-cccC--C--cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEc-CcEECC
Confidence            5689999999999988888776321 1111  1  3344455555555555555 455555555555555554 235555


Q ss_pred             CcEECCCcEE-----eceEECCCCEECCCc-EECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeE
Q 030076           94 STNIGFNVAL-----SNCIIGDSCIIHNGV-CIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV  167 (183)
Q Consensus        94 ~~~Ig~~~~i-----~~~~I~~~~~Ig~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~  167 (183)
                      ++.|+++|.|     .+++|++++.|+++. .+.                     ++++++++.|++++.+...  ...+
T Consensus       288 ~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~---------------------~~ii~~~~~i~~~~~~~~~--~~~~  344 (353)
T TIGR01208       288 YTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIV---------------------DSVIGKKVRIKGNRRRPGD--LRLT  344 (353)
T ss_pred             CCEECCCCEEeeeEEEeeEEcCCCEEcCCcceee---------------------cCEEcCCCEECCCcccccc--cceE
Confidence            5555555555     455555555555552 443                     6888888888888877642  2266


Q ss_pred             ECCCCEEC
Q 030076          168 IGDHSKID  175 (183)
Q Consensus       168 Ig~~~~I~  175 (183)
                      +|+++.|+
T Consensus       345 ~g~~~~~~  352 (353)
T TIGR01208       345 IGDYSQVE  352 (353)
T ss_pred             EcCCceec
Confidence            77777664

Alternate name: dTDP-D-glucose synthase

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=2.2e-14  Score=116.19  Aligned_cols=134  Identities=25%  Similarity=0.317  Sum_probs=82.7

Q ss_pred             hhhhhHHHhhhhhhcccchhhhhhhhhcccCC-C-------cEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEE
Q 030076           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNG-G-------GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV   85 (183)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~-------~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I   85 (183)
                      .++|.|+++++.++.++..++.......+... .       ..+.+++++++++.|+.++.|+++++||++|.|++++.|
T Consensus       215 ~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i  294 (358)
T COG1208         215 EGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEI  294 (358)
T ss_pred             CCeEEeCCCHHHHHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEE
Confidence            45899999999999888777643211111111 0       344555556666666666666666666666666666666


Q ss_pred             CCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC
Q 030076           86 GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD  165 (183)
Q Consensus        86 ~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~  165 (183)
                      .. ++|+++|.|++++.|.+++|+++|.|++     +                    . .+++ +.++.++.+.+|    
T Consensus       295 ~~-Sii~~~~~i~~~~~i~~sIi~~~~~ig~-----~--------------------~-~i~d-~~~g~~~~i~~g----  342 (358)
T COG1208         295 KN-SIIMDNVVIGHGSYIGDSIIGENCKIGA-----S--------------------L-IIGD-VVIGINSEILPG----  342 (358)
T ss_pred             Ee-eEEEcCCEECCCCEEeeeEEcCCcEECC-----c--------------------e-eecc-eEecCceEEcCc----
Confidence            43 3666667777777776666666666666     1                    2 2666 666667777766    


Q ss_pred             eEECCCCEECCCCe
Q 030076          166 TVIGDHSKIDNLVQ  179 (183)
Q Consensus       166 ~~Ig~~~~I~~~~~  179 (183)
                      +++++++.+.++..
T Consensus       343 ~~~~~~~~~~~~~~  356 (358)
T COG1208         343 VVVGPGSVVESGEI  356 (358)
T ss_pred             eEeCCCccccCccc
Confidence            66666666666554

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.56  E-value=1.4e-13  Score=115.00  Aligned_cols=35  Identities=26%  Similarity=0.352  Sum_probs=31.1

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ++.|++++++|.++++.++    +.||++++|++++.|.
T Consensus       393 ~~~igd~~~ig~~s~i~~~----~~ig~~~~v~~~~~v~  427 (458)
T PRK14354        393 KTIIGDNAFIGCNSNLVAP----VTVGDNAYIAAGSTIT  427 (458)
T ss_pred             CCEECCCcEEccCCEEeCC----cEECCCCEECCCCEEC
Confidence            5788999999999998888    9999999999999885

>PRK10502 putative acyl transferase; Provisional

Probab=99.55  E-value=6.8e-14  Score=103.30  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=26.6

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++||++|+||+++++.+|    ++||++++|+++++|.
T Consensus       124 ~i~Igd~~~Ig~~a~I~~G----v~Ig~~~vIga~svV~  158 (182)
T PRK10502        124 PIVIGEGCWLAADVFVAPG----VTIGSGAVVGARSSVF  158 (182)
T ss_pred             CEEEcCCcEEcCCCEEcCC----CEECCCCEECCCCEEe
Confidence            6777777777777777777    7777777777777763

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.54  E-value=2.8e-13  Score=100.84  Aligned_cols=107  Identities=21%  Similarity=0.269  Sum_probs=73.6

Q ss_pred             EECCCcEECCCCEE----CCCCEECCCcEECCCcEEe---ceEECCCCEECCCcEECCCCCceeeccCC-----c--ccc
Q 030076           72 VLGANVCIGSGTVV----GPAVTIGQSTNIGFNVALS---NCIIGDSCIIHNGVCIGQDGFGFFVDEHG-----N--MLK  137 (183)
Q Consensus        72 ~ig~~~~I~~~~~I----~~~~~Ig~~~~Ig~~~~i~---~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~-----~--~~~  137 (183)
                      .+|+++.++.++.+    .+...||+++.|++++.|.   +++||++|.|++++.|.+..++.......     .  ...
T Consensus        45 ~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~  124 (192)
T PRK09677         45 NFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMR  124 (192)
T ss_pred             EECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhc
Confidence            34444444444444    2345777888888887774   57899999999999888644332211100     0  011


Q ss_pred             CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          138 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       138 ~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      .....++.||++++|++++++.++    ++||++|+|+++++|.+
T Consensus       125 ~~~~~~v~Ig~~~~ig~~~~i~~g----~~Ig~~~~Iga~s~v~~  165 (192)
T PRK09677        125 TLESSAVVIGQRVWIGENVTILPG----VSIGNGCIVGANSVVTK  165 (192)
T ss_pred             ccccCCeEEcCCcEECCCCEEcCC----CEECCCCEECCCCEECc
Confidence            223458999999999999999988    99999999999999853

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.54  E-value=3.3e-13  Score=113.56  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=31.8

Q ss_pred             eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       142 ~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .+++||++++||.++++.++    ++||++++|+++++|.
T Consensus       398 ~~~~IGd~~~iG~~~~i~~~----~~Ig~~~~igags~v~  433 (482)
T PRK14352        398 HRTTIGSHVRTGSDTMFVAP----VTVGDGAYTGAGTVIR  433 (482)
T ss_pred             CCCeECCCcEECCCCEEeCC----CEECCCcEECCCCEEc
Confidence            36889999999999999988    9999999999999874

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.54  E-value=1.7e-13  Score=102.02  Aligned_cols=68  Identities=31%  Similarity=0.584  Sum_probs=31.0

Q ss_pred             ceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEEC
Q 030076           52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        52 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~  121 (183)
                      .+++.++++|++++.|++.+.|++++.|+++|.|++++.|++. .|++++.|. ++.+ +++.|++++.|+
T Consensus         9 ~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~-~Ig~~~~I~~~~~i-~~~~ig~~~~Ig   77 (193)
T cd03353           9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVI-EGAVIGNGATVG   77 (193)
T ss_pred             eEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCC-EECCCCEEcCCeEE-EeeEECCCCEEC
Confidence            3445555555555555555555544444444444444444432 444444442 2223 234444444444

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>PRK10502 putative acyl transferase; Provisional

Probab=99.53  E-value=5.6e-13  Score=98.41  Aligned_cols=92  Identities=23%  Similarity=0.328  Sum_probs=66.7

Q ss_pred             EECCCcEECCCcEEcc--CcEECCCcEECCCCEEC--CCCEECCCcEECCCcEE----------------eceEECCCCE
Q 030076           54 CIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVAL----------------SNCIIGDSCI  113 (183)
Q Consensus        54 ~i~~~~~i~~~~~i~~--~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i----------------~~~~I~~~~~  113 (183)
                      .+++++.|.+++.|..  ++.||+++.|++++.|.  ..++||++|.|++++.|                .+++|+++|+
T Consensus        53 ~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~  132 (182)
T PRK10502         53 KIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCW  132 (182)
T ss_pred             ccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcE
Confidence            3344444444444332  46677777777777775  35678888888888776                2468999999


Q ss_pred             ECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC
Q 030076          114 IHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD  165 (183)
Q Consensus       114 Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~  165 (183)
                      |++++.|.+                    ++.||+++.|++++++.+..+++
T Consensus       133 Ig~~a~I~~--------------------Gv~Ig~~~vIga~svV~~~v~~~  164 (182)
T PRK10502        133 LAADVFVAP--------------------GVTIGSGAVVGARSSVFKSLPAN  164 (182)
T ss_pred             EcCCCEEcC--------------------CCEECCCCEECCCCEEecccCCC
Confidence            999999987                    89999999999999998775433

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.53  E-value=4.3e-14  Score=117.50  Aligned_cols=92  Identities=10%  Similarity=0.190  Sum_probs=49.7

Q ss_pred             hhhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEEC
Q 030076           13 TKTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG   92 (183)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig   92 (183)
                      +.++|.+++++..|+.+++.++.......+......+.......+++.+ .++.|.+ ++|+++|.|+ ++.|+ +++|+
T Consensus       260 ~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~-~svI~  335 (436)
T PLN02241        260 FDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKI-EDCRITD-SIISHGCFLR-ECKIE-HSVVG  335 (436)
T ss_pred             eCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEe-cCCeEEE-eEEcCCcEEc-CeEEE-eeEEc
Confidence            3578999999999998888877543222222222222221222233333 2344433 5556666665 55554 33666


Q ss_pred             CCcEECCCcEEeceEE
Q 030076           93 QSTNIGFNVALSNCII  108 (183)
Q Consensus        93 ~~~~Ig~~~~i~~~~I  108 (183)
                      ++|.|+++|.|.++++
T Consensus       336 ~~~~Ig~~~~I~~sii  351 (436)
T PLN02241        336 LRSRIGEGVEIEDTVM  351 (436)
T ss_pred             CCCEECCCCEEEEeEE
Confidence            6666666666655554

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.53  E-value=2.6e-13  Score=113.33  Aligned_cols=130  Identities=18%  Similarity=0.203  Sum_probs=74.5

Q ss_pred             cEEccceEECCCcEECCCcEEccCc-----EECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEE
Q 030076           47 GIFHQSACIDSTVLIEVGAIVHSKA-----VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCI  120 (183)
Q Consensus        47 ~~i~~~~~i~~~~~i~~~~~i~~~~-----~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i  120 (183)
                      ..+.+++.+.+++.|++++.|++++     +|+++|.|++++.| .+++|+++|.|++++.|. +++|++++.|++++.+
T Consensus       276 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i-~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i  354 (456)
T PRK14356        276 AEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHL-EGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEM  354 (456)
T ss_pred             CEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEE-cccceecccEECCceEECCCCEECCCCEecCCcee
Confidence            3333333333344555555555544     34555555555555 244667777777777664 5666666666655444


Q ss_pred             CCCC------------CceeeccCCcccc---------CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCe
Q 030076          121 GQDG------------FGFFVDEHGNMLK---------KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQ  179 (183)
Q Consensus       121 ~~~~------------~~~~~~~~~~~~~---------~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~  179 (183)
                      .+.-            ++.....+.....         .....++.||+++++|.++.+.++    ++||++++|+++++
T Consensus       355 ~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~----~~ig~~~~i~~~~~  430 (456)
T PRK14356        355 KKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP----VTIGDGALVGAGSV  430 (456)
T ss_pred             eeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC----cEECCCCEEcCCCE
Confidence            2210            0000111111000         011246899999999999999988    99999999999998


Q ss_pred             Ee
Q 030076          180 VG  181 (183)
Q Consensus       180 v~  181 (183)
                      |.
T Consensus       431 v~  432 (456)
T PRK14356        431 IT  432 (456)
T ss_pred             Ee
Confidence            84

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.53  E-value=2.7e-13  Score=113.06  Aligned_cols=126  Identities=27%  Similarity=0.382  Sum_probs=65.6

Q ss_pred             ccceEECCCcEECCCcEEccCcEECCCcEECCCCEECC---------------CCEECCCcEECCCcEEe-ceEECCCCE
Q 030076           50 HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP---------------AVTIGQSTNIGFNVALS-NCIIGDSCI  113 (183)
Q Consensus        50 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~---------------~~~Ig~~~~Ig~~~~i~-~~~I~~~~~  113 (183)
                      .+++.+++++.|++++.|.+++.||+++.|++++.|+.               +++|++++.|+++|.|. +++|+++|.
T Consensus       260 ~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~  339 (450)
T PRK14360        260 SETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCR  339 (450)
T ss_pred             eCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceE
Confidence            33344444444444444444445555555555554431               23445555555555553 455555555


Q ss_pred             ECCCcEECCCCCceeeccCCccc-cCCceeceEECCCCEECCCcEEcCC--C-CCCeEECCCCEECCCCeE
Q 030076          114 IHNGVCIGQDGFGFFVDEHGNML-KKPQLLNARIGNHVEIGANSCIDRG--S-WRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       114 Ig~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~Ig~~~~Ig~~~~v~~g--~-~~~~~Ig~~~~I~~~~~v  180 (183)
                      |++++.+.+.     ...+.... +....+.+.|+++|.||+++++...  . .+.++||+++.|+++++|
T Consensus       340 Ig~~~~i~~~-----~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i  405 (450)
T PRK14360        340 IGNFVEIKKS-----QLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVL  405 (450)
T ss_pred             ECCCEEEecc-----ccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEE
Confidence            5555555421     11122211 2223457889999999998877431  1 234666666666666655

>PLN02694 serine O-acetyltransferase

Probab=99.52  E-value=3.5e-13  Score=104.72  Aligned_cols=98  Identities=28%  Similarity=0.388  Sum_probs=67.3

Q ss_pred             eEECCCcEECCCcEEcc--CcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeec
Q 030076           53 ACIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVD  130 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i~~--~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~  130 (183)
                      ..|++.+.|++++.|..  +++||+++.||++|.|..+++++..   +..+...+++|+++|+||+++.|..        
T Consensus       161 vdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilg--------  229 (294)
T PLN02694        161 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILG--------  229 (294)
T ss_pred             EEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECC--------
Confidence            34444455555544443  5566666666666666555555542   3445567889999999999999976        


Q ss_pred             cCCccccCCceeceEECCCCEECCCcEEcCCCC-CCeEECCCCE
Q 030076          131 EHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW-RDTVIGDHSK  173 (183)
Q Consensus       131 ~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~-~~~~Ig~~~~  173 (183)
                                  ++.||+++.|+++++|.+.++ ..++.|..+.
T Consensus       230 ------------gi~IGd~a~IGAgSVV~kdVP~~~~v~G~PAk  261 (294)
T PLN02694        230 ------------NVKIGEGAKIGAGSVVLIDVPPRTTAVGNPAR  261 (294)
T ss_pred             ------------CCEECCCCEECCCCEECCcCCCCcEEEccCcE
Confidence                        899999999999999998873 4455555443

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.52  E-value=2.4e-13  Score=87.14  Aligned_cols=76  Identities=26%  Similarity=0.482  Sum_probs=44.0

Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECC
Q 030076           75 ANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA  154 (183)
Q Consensus        75 ~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~  154 (183)
                      +++.|++++.|+++++|+++|.|++++.|.++++++++.|++++.+.                     ++++++++.+++
T Consensus         4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~---------------------~sii~~~~~v~~   62 (80)
T cd05824           4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVK---------------------SSIVGWNSTVGR   62 (80)
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEe---------------------CCEEeCCCEECC
Confidence            34444444444444555555666666666666666666666666665                     556666666666


Q ss_pred             CcEEcCCCCCCeEECCCCEEC
Q 030076          155 NSCIDRGSWRDTVIGDHSKID  175 (183)
Q Consensus       155 ~~~v~~g~~~~~~Ig~~~~I~  175 (183)
                      ++.+..+    ++||+++.|+
T Consensus        63 ~~~~~~~----~~ig~~~~i~   79 (80)
T cd05824          63 WTRLENV----TVLGDDVTIK   79 (80)
T ss_pred             CcEEecC----EEECCceEEC
Confidence            6666554    5555555554

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.52  E-value=1e-13  Score=105.32  Aligned_cols=107  Identities=26%  Similarity=0.331  Sum_probs=71.7

Q ss_pred             cEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCcccc
Q 030076           59 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK  137 (183)
Q Consensus        59 ~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~  137 (183)
                      ++|.+++++..+++|++++.+.+.++|.-++.++..+.|.-++.+. .++||++|+|+.++.|..            .+.
T Consensus       109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~G------------VLe  176 (271)
T COG2171         109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGG------------VLE  176 (271)
T ss_pred             eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeE------------Eec
Confidence            4555555555555555555555555555555556666665555553 356888888888888864            122


Q ss_pred             CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          138 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       138 ~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ..+..+++||+||.||+++++..|    +.+|++|+|++|++|+
T Consensus       177 p~~a~Pv~IgdncliGAns~~veG----V~vGdg~VV~aGv~I~  216 (271)
T COG2171         177 PLQANPVIIGDNCLIGANSEVVEG----VIVGDGCVVAAGVFIT  216 (271)
T ss_pred             CCCCCCeEECCccEeccccceEee----eEeCCCcEEecceEEe
Confidence            233448888888888888877777    8888888888888875

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.51  E-value=7e-14  Score=115.28  Aligned_cols=124  Identities=15%  Similarity=0.172  Sum_probs=84.1

Q ss_pred             hhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEE-CCC--cEEccCcEECCCcEECCCCEECCCCE
Q 030076           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLI-EVG--AIVHSKAVLGANVCIGSGTVVGPAVT   90 (183)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~--~~i~~~~~ig~~~~I~~~~~I~~~~~   90 (183)
                      .++|.|+++.+.|+.+++.++.......+......+.......+++.+ ...  ..+.++++|+++|.|+ ++.|+ +++
T Consensus       256 ~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~sv  333 (407)
T PRK00844        256 RGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSV  333 (407)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCE
Confidence            478999999999999988887543222222221112211111222222 111  1234567888888887 78776 468


Q ss_pred             ECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcC
Q 030076           91 IGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR  160 (183)
Q Consensus        91 Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~  160 (183)
                      |+++|.|+++|.|.+++|+++|.|++++.|.                     .++|++++.|++++++..
T Consensus       334 Ig~~~~I~~~~~i~~sii~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        334 LSPNVVVESGAEVEDSVLMDGVRIGRGAVVR---------------------RAILDKNVVVPPGATIGV  382 (407)
T ss_pred             ECCCCEECCCCEEeeeEECCCCEECCCCEEE---------------------eeEECCCCEECCCCEECC
Confidence            8888888888888888888888888888887                     688888888888887765

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.51  E-value=2.6e-13  Score=98.87  Aligned_cols=105  Identities=27%  Similarity=0.341  Sum_probs=71.7

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCC
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD  123 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~  123 (183)
                      ..+..|+|.+.|+++.+|+++.    +++||+.+.||++|.|..+++||.. --..+  -++..|+++++||+++.|.. 
T Consensus        65 ~~gieIhp~A~IG~g~fIdHg~----GvVIgeta~IGddv~I~~gVTLGgt-g~~~g--~RhPtIg~~V~IGagAkILG-  136 (194)
T COG1045          65 LFGIEIHPGAKIGRGLFIDHGT----GVVIGETAVIGDDVTIYHGVTLGGT-GKESG--KRHPTIGNGVYIGAGAKILG-  136 (194)
T ss_pred             hcceeeCCCCeECCceEEcCCc----eEEEcceeEECCCeEEEcceEecCC-CCcCC--CCCCccCCCeEECCCCEEEc-
Confidence            3455577777777777776653    4455555555555555555455431 11111  35689999999999999976 


Q ss_pred             CCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC-CCCeEECCCCEEC
Q 030076          124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS-WRDTVIGDHSKID  175 (183)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~-~~~~~Ig~~~~I~  175 (183)
                                         +..||+|+.||+|++|.+.+ .+.+++|-.+.+-
T Consensus       137 -------------------~I~IGd~akIGA~sVVlkdVP~~~tvvGvPArii  170 (194)
T COG1045         137 -------------------NIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVI  170 (194)
T ss_pred             -------------------ceEECCCCEECCCceEccCCCCCceEecCcceEe
Confidence                               89999999999999999987 4456666665543

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.51  E-value=2.7e-13  Score=86.57  Aligned_cols=77  Identities=27%  Similarity=0.474  Sum_probs=44.4

Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEE
Q 030076           73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI  152 (183)
Q Consensus        73 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I  152 (183)
                      |++++.|++++.|.+ +.|+++|.|++++.|.+++|++++.|++++.+.                     +++|++++.|
T Consensus         2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~---------------------~svv~~~~~i   59 (79)
T cd03356           2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIV---------------------DSIIGDNAVI   59 (79)
T ss_pred             ccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEE---------------------CCEECCCCEE
Confidence            344455555555543 455666666666666666666666666666665                     4556666666


Q ss_pred             CCCcEEcCCCCCCeEECCCCEEC
Q 030076          153 GANSCIDRGSWRDTVIGDHSKID  175 (183)
Q Consensus       153 g~~~~v~~g~~~~~~Ig~~~~I~  175 (183)
                      ++++.+..+    +++++++.|+
T Consensus        60 ~~~~~i~~~----~~ig~~~~i~   78 (79)
T cd03356          60 GENVRVVNL----CIIGDDVVVE   78 (79)
T ss_pred             CCCCEEcCC----eEECCCeEEC
Confidence            666666544    5555555554

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.51  E-value=6.6e-13  Score=96.20  Aligned_cols=51  Identities=22%  Similarity=0.310  Sum_probs=29.6

Q ss_pred             cEECCCcEECCCCEECCC---CEECCCcEECCCcEEe-------------ceEECCCCEECCCcEEC
Q 030076           71 AVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALS-------------NCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        71 ~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~-------------~~~I~~~~~Ig~~~~i~  121 (183)
                      +.|++++.|++++.|.+.   ++||++|.|+++|.|.             +++|++++.|++++.+.
T Consensus        22 I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~   88 (161)
T cd03359          22 IVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVN   88 (161)
T ss_pred             EEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEE
Confidence            344444444444444432   3555555555555553             35788888888888876

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.50  E-value=3.2e-13  Score=112.94  Aligned_cols=62  Identities=24%  Similarity=0.476  Sum_probs=46.4

Q ss_pred             EECCCc-EEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076           60 LIEVGA-IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        60 ~i~~~~-~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~  121 (183)
                      .+++.+ .|++++.|++++.|++++.|+++++||++|.|+++|.|.+++|+++|.|++++.+.
T Consensus       257 ~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~  319 (459)
T PRK14355        257 LIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLE  319 (459)
T ss_pred             EECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEe
Confidence            344442 46667777777777777777777788888888888888888888888888888775

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.50  E-value=3.7e-13  Score=85.81  Aligned_cols=77  Identities=30%  Similarity=0.473  Sum_probs=50.2

Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEE
Q 030076           73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI  152 (183)
Q Consensus        73 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I  152 (183)
                      |++++.|++++.|. ++.|+++|.|++++.|.+++|++++.|++++.+.                     .++|++++.|
T Consensus         2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~---------------------~~~i~~~~~i   59 (79)
T cd05787           2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH---------------------HSIVADGAVI   59 (79)
T ss_pred             ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe---------------------CcEEcCCCEE
Confidence            45556666666664 3567777777777777777777777777777775                     5666666666


Q ss_pred             CCCcEEcCCCCCCeEECCCCEEC
Q 030076          153 GANSCIDRGSWRDTVIGDHSKID  175 (183)
Q Consensus       153 g~~~~v~~g~~~~~~Ig~~~~I~  175 (183)
                      ++++.+..+    ++|++++.|+
T Consensus        60 ~~~~~i~~~----~~v~~~~~ig   78 (79)
T cd05787          60 GKGCTIPPG----SLISFGVVIG   78 (79)
T ss_pred             CCCCEECCC----CEEeCCcEeC
Confidence            666666555    5555555554

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.49  E-value=4.7e-13  Score=85.97  Aligned_cols=47  Identities=32%  Similarity=0.595  Sum_probs=22.3

Q ss_pred             CCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076           74 GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        74 g~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~  121 (183)
                      ++++.|++++.|+ ++.|+++|.|++++.|.+++|++++.|++++.+.
T Consensus         3 g~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~   49 (81)
T cd04652           3 GENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLE   49 (81)
T ss_pred             cCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEe
Confidence            3344444444443 2344455555555555455555555555555553

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.49  E-value=3.4e-13  Score=104.59  Aligned_cols=50  Identities=26%  Similarity=0.296  Sum_probs=40.6

Q ss_pred             ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC-CCCeEECCCCEE
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS-WRDTVIGDHSKI  174 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~-~~~~~Ig~~~~I  174 (183)
                      +++|+++|+||+++.|..                    ++.||+++.||++++|.+.+ ...++.|..+.+
T Consensus       193 ~p~IGd~V~IGaga~Ilg--------------------gv~IG~~a~IGAgSvV~~dVp~~~~v~G~PArv  243 (273)
T PRK11132        193 HPKIREGVMIGAGAKILG--------------------NIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARI  243 (273)
T ss_pred             CCEECCCcEEcCCCEEcC--------------------CCEECCCCEECCCCEECcccCCCcEEEecCcEE
Confidence            578999999999999987                    89999999999999998877 344555655553

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.49  E-value=1.2e-13  Score=114.60  Aligned_cols=142  Identities=13%  Similarity=0.152  Sum_probs=92.6

Q ss_pred             hhhhhHHHhhhhhhcccchhh-hhhhhhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEEC
Q 030076           14 KTYKQDFGRFCNLFSTKSDIE-SRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG   92 (183)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig   92 (183)
                      .++|.++++++.|+.++..++ ..............++....+.+++.+. ++.+. +++|+++|.| +++.|+ +++|+
T Consensus       253 ~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~-~~~~~-~~~ig~~~~i-~~~~i~-~svi~  328 (429)
T PRK02862        253 DGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLL-DATIT-ESIIAEGCII-KNCSIH-HSVLG  328 (429)
T ss_pred             CCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCcccc-ccEEE-eCEECCCCEE-CCcEEE-EEEEe
Confidence            578999999999998887776 2222111222222222233344444442 45553 4788888888 777775 45888


Q ss_pred             CCcEECCCcEEeceEECC-------------------CCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEEC
Q 030076           93 QSTNIGFNVALSNCIIGD-------------------SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG  153 (183)
Q Consensus        93 ~~~~Ig~~~~i~~~~I~~-------------------~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig  153 (183)
                      ++|.|+++|.|.+++|+.                   ++.|++++.|.                     .++|++++.||
T Consensus       329 ~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~---------------------~~ii~~~~~i~  387 (429)
T PRK02862        329 IRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIK---------------------RAIIDKNARIG  387 (429)
T ss_pred             CCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEE---------------------EEEECCCcEEC
Confidence            888888888888888765                   57788888886                     78888888888


Q ss_pred             CCcEEcCCC--------CCCeEECCC-CEECCCCeE
Q 030076          154 ANSCIDRGS--------WRDTVIGDH-SKIDNLVQV  180 (183)
Q Consensus       154 ~~~~v~~g~--------~~~~~Ig~~-~~I~~~~~v  180 (183)
                      +++.+..+.        .++++|+++ ++|+.++++
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (429)
T PRK02862        388 NNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI  423 (429)
T ss_pred             CCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence            888775332        134566665 556655554

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.49  E-value=6.2e-13  Score=111.14  Aligned_cols=73  Identities=22%  Similarity=0.386  Sum_probs=48.2

Q ss_pred             EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~  122 (183)
                      .+++++.|++++.|++++.|.+++.||++|.|++++.|. +++|+++|.|++ +.+.+++|+++|.|++++.|.+
T Consensus       261 ~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~  333 (458)
T PRK14354        261 YIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIV-DSTIGDGVTITN-SVIEESKVGDNVTVGPFAHLRP  333 (458)
T ss_pred             EECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEe-ccEECCCCEEEE-EEEeCCEECCCcEECCceEecC
Confidence            344455555555555555555566666666666666664 347777777773 5667788888888888887775

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.48  E-value=8.3e-13  Score=98.73  Aligned_cols=35  Identities=40%  Similarity=0.504  Sum_probs=27.1

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++||++||||+++++.+|    ++||++++|+++++|.
T Consensus       131 pi~IGd~v~IG~~~~I~~g----v~IG~~~vIgagsvV~  165 (203)
T PRK09527        131 PITIGNNVWIGSHVVINPG----VTIGDNSVIGAGSVVT  165 (203)
T ss_pred             CeEECCCcEECCCCEEcCC----CEECCCCEECCCCEEc
Confidence            6778888888888877777    7777777777777774

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.48  E-value=8.6e-13  Score=84.73  Aligned_cols=79  Identities=22%  Similarity=0.393  Sum_probs=66.3

Q ss_pred             ECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN  134 (183)
Q Consensus        55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~  134 (183)
                      |++++.|++++.|. ++.|++++.|++++.|++ ++|++++.|++++.|.++++++++.|++++.+.             
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~-s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~-------------   66 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITN-CVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK-------------   66 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEeC-cEEeCCCEECCCCEEeccEEeCCCEECCCCEEc-------------
Confidence            45566666666665 578888888888999865 689999999999999999999999999999997             


Q ss_pred             cccCCceeceEECCCCEECCCc
Q 030076          135 MLKKPQLLNARIGNHVEIGANS  156 (183)
Q Consensus       135 ~~~~~~~~~~~Ig~~~~Ig~~~  156 (183)
                              ++++++++.|++++
T Consensus        67 --------~~ii~~~~~i~~~~   80 (81)
T cd04652          67 --------DCLVGSGYRVEAGT   80 (81)
T ss_pred             --------cCEECCCcEeCCCC
Confidence                    78888888887764

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.48  E-value=6.7e-13  Score=96.23  Aligned_cols=41  Identities=24%  Similarity=0.383  Sum_probs=35.7

Q ss_pred             eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCC
Q 030076          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR  164 (183)
Q Consensus       104 ~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~  164 (183)
                      ..++|+++|+|++++.|..                    +++||++++|+++++|.+++++
T Consensus       112 ~~~~Ig~~v~Ig~~a~I~~--------------------~v~IG~~~~Iga~s~V~~dvp~  152 (162)
T TIGR01172       112 RHPTVGEGVMIGAGAKVLG--------------------NIEVGENAKIGANSVVLKDVPP  152 (162)
T ss_pred             cCCEECCCcEEcCCCEEEC--------------------CcEECCCCEECCCCEECCCCCC
Confidence            3568999999999999987                    8999999999999999988533

Cysteine biosynthesis

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.47  E-value=9e-13  Score=102.76  Aligned_cols=31  Identities=26%  Similarity=0.512  Sum_probs=25.8

Q ss_pred             eEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          144 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       144 ~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      +.||++|+||+|+.+  |    ..||++|+|++|++|
T Consensus       251 V~IGe~~lIGagA~I--G----I~IGd~~iIGAGavV  281 (341)
T TIGR03536       251 ISVGEGCLLGANAGI--G----IPLGDRCTVEAGLYI  281 (341)
T ss_pred             EEECCCcEECCCCEE--e----eEECCCCEECCCCEE
Confidence            888888888888888  5    788888888888877

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.47  E-value=1.1e-12  Score=84.07  Aligned_cols=78  Identities=22%  Similarity=0.300  Sum_probs=67.1

Q ss_pred             ECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN  134 (183)
Q Consensus        55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~  134 (183)
                      +++++.|++++.|++++.|+++|.|++++.|. ++++++++.|++++.|.++++++++.+++++.+..            
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~-~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~------------   68 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLEN------------   68 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEe-eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEec------------
Confidence            45667777778888888889999999999996 45999999999999999999999999999999975            


Q ss_pred             cccCCceeceEECCCCEEC
Q 030076          135 MLKKPQLLNARIGNHVEIG  153 (183)
Q Consensus       135 ~~~~~~~~~~~Ig~~~~Ig  153 (183)
                              ++++++++.++
T Consensus        69 --------~~~ig~~~~i~   79 (80)
T cd05824          69 --------VTVLGDDVTIK   79 (80)
T ss_pred             --------CEEECCceEEC
Confidence                    57888888776

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=99.46  E-value=3.6e-13  Score=109.73  Aligned_cols=133  Identities=19%  Similarity=0.258  Sum_probs=96.3

Q ss_pred             hhhhhhHHHhhhhhhcccchhhhhhhhhccc-CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEE
Q 030076           13 TKTYKQDFGRFCNLFSTKSDIESRQQFQKWH-NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI   91 (183)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~I   91 (183)
                      ..++|.|++++..++.++..++........+ .....+.....+.+++.|++++.| ++++||++|.|+  +.|. +++|
T Consensus       232 ~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~-~s~i  307 (369)
T TIGR02092       232 YTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE--GKVE-NSIL  307 (369)
T ss_pred             cCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe--eEEe-CCEE
Confidence            3578999999999998887777553322222 111112222224467777777777 677888888885  3454 4599


Q ss_pred             CCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECC
Q 030076           92 GQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGD  170 (183)
Q Consensus        92 g~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~  170 (183)
                      +++|.|+++|.|.+++|++++.|++++.+.                     +++|++++.|++++.+........++.+
T Consensus       308 ~~~~~I~~~~~i~~sii~~~~~I~~~~~i~---------------------~~ii~~~~~v~~~~~~~~~~~~~~~~~~  365 (369)
T TIGR02092       308 SRGVHVGKDALIKNCIIMQRTVIGEGAHLE---------------------NVIIDKDVVIEPNVKIAGTSEQPLVISK  365 (369)
T ss_pred             CCCCEECCCCEEEeeEEeCCCEECCCCEEE---------------------EEEECCCCEECCCCEeCCCCCccEEEec
Confidence            999999999999999999999999999997                     7999999999999988654333344433

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.46  E-value=1.2e-12  Score=83.56  Aligned_cols=77  Identities=30%  Similarity=0.497  Sum_probs=65.4

Q ss_pred             ECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN  134 (183)
Q Consensus        55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~  134 (183)
                      |++++.|++++.|.+ +.|+++|.|++++.|.+ ++|++++.|++++.|.+++|++++.|++++.+.+            
T Consensus         2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~-svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~------------   67 (79)
T cd03356           2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTITN-SILMDNVTIGANSVIVDSIIGDNAVIGENVRVVN------------   67 (79)
T ss_pred             ccCCcEECCCCEEeC-CEECCCCEECCCCEEeC-CEEeCCCEECCCCEEECCEECCCCEECCCCEEcC------------
Confidence            566777777777766 88899999999999964 5999999999999999999999999999999985            


Q ss_pred             cccCCceeceEECCCCEEC
Q 030076          135 MLKKPQLLNARIGNHVEIG  153 (183)
Q Consensus       135 ~~~~~~~~~~~Ig~~~~Ig  153 (183)
                              ++++++++.++
T Consensus        68 --------~~~ig~~~~i~   78 (79)
T cd03356          68 --------LCIIGDDVVVE   78 (79)
T ss_pred             --------CeEECCCeEEC
Confidence                    57888887776

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.46  E-value=4.7e-13  Score=111.54  Aligned_cols=57  Identities=21%  Similarity=0.362  Sum_probs=37.6

Q ss_pred             cEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076           65 AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        65 ~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~  121 (183)
                      +.+.+.+.||+++.|++++.|.++++||++|.|+++|.|.+++|+++|.|++++.+.
T Consensus       256 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~  312 (451)
T TIGR01173       256 FDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLE  312 (451)
T ss_pred             EEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEe
Confidence            344555566666666666666666667777777777777777777777777666665

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.46  E-value=3.7e-12  Score=95.21  Aligned_cols=101  Identities=26%  Similarity=0.307  Sum_probs=69.8

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC--CCCEECCCcEECCCcEEe-------------------ceE
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVALS-------------------NCI  107 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i~-------------------~~~  107 (183)
                      ++++++|.+++.+.    .+.++.||+++.|..++.|.  ..+.||++|.|+++|.|.                   .++
T Consensus        58 ig~~~~I~~~~~~~----~g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~  133 (203)
T PRK09527         58 VGENAWVEPPVYFS----YGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPIT  133 (203)
T ss_pred             cCCCcEEcCCEEEe----eCCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeE
Confidence            55555666555542    12345556666666666552  246777777777777773                   278


Q ss_pred             ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCC-CeEECCCCE
Q 030076          108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR-DTVIGDHSK  173 (183)
Q Consensus       108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~-~~~Ig~~~~  173 (183)
                      |+++|+||.++.|.+                    ++.||++++|+++++|.+..++ ....|..|.
T Consensus       134 IGd~v~IG~~~~I~~--------------------gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk  180 (203)
T PRK09527        134 IGNNVWIGSHVVINP--------------------GVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCR  180 (203)
T ss_pred             ECCCcEECCCCEEcC--------------------CCEECCCCEECCCCEEcccCCCCcEEEeeCCE
Confidence            999999999999987                    8999999999999999877533 344444443

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.46  E-value=4.2e-12  Score=94.53  Aligned_cols=90  Identities=27%  Similarity=0.363  Sum_probs=69.1

Q ss_pred             eEECCCcEECCCcEE----ccCcEECCCcEECCCCEEC--CCCEECCCcEECCCcEEe----------------------
Q 030076           53 ACIDSTVLIEVGAIV----HSKAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVALS----------------------  104 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i----~~~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i~----------------------  104 (183)
                      ..+++++.++.++++    .+...||+++.|++++.|.  ++++||++|.|++++.|.                      
T Consensus        44 I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~  123 (192)
T PRK09677         44 INFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDM  123 (192)
T ss_pred             EEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhh
Confidence            345566666666665    3456778888888888776  467888888888888774                      


Q ss_pred             ------ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076          105 ------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (183)
Q Consensus       105 ------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~  162 (183)
                            +++|+++|+|++++.|.+                    ++.||++++|++++++.+..
T Consensus       124 ~~~~~~~v~Ig~~~~ig~~~~i~~--------------------g~~Ig~~~~Iga~s~v~~~i  167 (192)
T PRK09677        124 RTLESSAVVIGQRVWIGENVTILP--------------------GVSIGNGCIVGANSVVTKSI  167 (192)
T ss_pred             cccccCCeEEcCCcEECCCCEEcC--------------------CCEECCCCEECCCCEECccc
Confidence                  257899999999999887                    89999999999999998654

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.46  E-value=1.6e-12  Score=101.32  Aligned_cols=98  Identities=17%  Similarity=0.324  Sum_probs=79.5

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcE-ECCCCE---ECCCCEECCCcEECCCcEEe-----c----eEE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVC-IGSGTV---VGPAVTIGQSTNIGFNVALS-----N----CII  108 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~-I~~~~~---I~~~~~Ig~~~~Ig~~~~i~-----~----~~I  108 (183)
                      ....+..|.+.++|..++.+++|+.|.++++|+.++. +|.+++   |..+++|+++|.||.+|.|.     +    +.|
T Consensus       174 Vvp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~I  253 (341)
T TIGR03536       174 VVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISV  253 (341)
T ss_pred             EccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEE
Confidence            3456778888888888888888888888888888888 777777   66778888888888888882     3    678


Q ss_pred             CCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       109 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      |++|+||.++.|                      ++.||++|.|++|+.|..+
T Consensus       254 Ge~~lIGagA~I----------------------GI~IGd~~iIGAGavVtag  284 (341)
T TIGR03536       254 GEGCLLGANAGI----------------------GIPLGDRCTVEAGLYITAG  284 (341)
T ss_pred             CCCcEECCCCEE----------------------eeEECCCCEECCCCEEeCC
Confidence            888888888887                      5788888888888888877

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.46  E-value=2.4e-12  Score=93.95  Aligned_cols=34  Identities=38%  Similarity=0.429  Sum_probs=18.4

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      ++.||++|||+++++|.++    ++||++|+|+++++|
T Consensus       118 ~v~IG~~~~Ig~~a~I~~g----v~Ig~~~~VgagavV  151 (169)
T cd03357         118 PITIGDNVWIGGGVIILPG----VTIGDNSVIGAGSVV  151 (169)
T ss_pred             CcEeCCCEEECCCCEEeCC----CEECCCCEECCCCEE
Confidence            4555555555555555544    555555555555554

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK10191 putative acyl transferase; Provisional

Probab=99.46  E-value=1.9e-12  Score=91.95  Aligned_cols=98  Identities=26%  Similarity=0.355  Sum_probs=64.5

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCcee
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF  128 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~  128 (183)
                      |.+.+.+++++.|+++    .++.|++++.||+++.|+.+++||+......    ..+.|+++|+|++++.+.+      
T Consensus        44 I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~----~~~~IGd~~~Ig~~~~I~~------  109 (146)
T PRK10191         44 IQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTIRHGVTIGNRGADNM----ACPHIGNGVELGANVIILG------  109 (146)
T ss_pred             cCCCCEECCCeEECCC----CeEEECCCcEECCCCEECCCCEECCCCcCCC----CCCEECCCcEEcCCCEEeC------
Confidence            4444555555555543    1445555555555555555555554433222    2358999999999999987      


Q ss_pred             eccCCccccCCceeceEECCCCEECCCcEEcCCC-CCCeEECCCCEE
Q 030076          129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS-WRDTVIGDHSKI  174 (183)
Q Consensus       129 ~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~-~~~~~Ig~~~~I  174 (183)
                                    ++.||++++|++++++.+.. ...+++|..+.+
T Consensus       110 --------------~v~IG~~~~Igags~V~~dv~~~~~v~G~pA~~  142 (146)
T PRK10191        110 --------------DITIGNNVTVGAGSVVLDSVPDNALVVGEKARV  142 (146)
T ss_pred             --------------CCEECCCCEECCCCEECCccCCCcEEEccCcEE
Confidence                          89999999999999998876 344566665543

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.45  E-value=1.9e-12  Score=100.46  Aligned_cols=104  Identities=24%  Similarity=0.271  Sum_probs=72.0

Q ss_pred             CCcEECCCcEEccCcEECCCcEECCCCEECCCC-EECCCcEECCCcEE-eceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076           57 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV-TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN  134 (183)
Q Consensus        57 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~-~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~  134 (183)
                      .+++|.++.++.-+++|++++.|.++++|..++ +||+. .|  ++.| ..++||++|.|++++.|...           
T Consensus       152 ~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~-----------  217 (319)
T TIGR03535       152 TGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGT-----------  217 (319)
T ss_pred             CccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecce-----------
Confidence            455666666666666777777777777776666 56664 55  3555 34678888888888885531           


Q ss_pred             cccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          135 MLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       135 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                       +......++.||++|+||+|+.|  |    ..||++|+|++|++|.
T Consensus       218 -LsGg~~~pV~IGe~~~IGagA~I--G----I~IGd~~VVGAGaVVt  257 (319)
T TIGR03535       218 -LSGGGKEVISIGERCLLGANSGL--G----ISLGDDCVVEAGLYVT  257 (319)
T ss_pred             -ecCCCcccEEECCCcEECCCCEE--C----eEECCCCEECCCCEEe
Confidence             00011125999999999999999  5    8999999999999884

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.45  E-value=9e-13  Score=109.89  Aligned_cols=68  Identities=19%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             EECCCcEECCCcEEccCcEECCCcEECCCCEECCC-----CEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076           54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        54 ~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~-----~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~  122 (183)
                      ++++++.|++++.|++++.|++++.||++|.|+++     ++|+++|.|. .+.+.+++|++++.|++++.+.+
T Consensus       251 ~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~  323 (448)
T PRK14357        251 YIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLRE  323 (448)
T ss_pred             EEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECC
Confidence            55555555555555555544444444444444444     3556666553 33456777777777777777754

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.45  E-value=2.8e-12  Score=85.73  Aligned_cols=84  Identities=20%  Similarity=0.304  Sum_probs=64.9

Q ss_pred             ceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeecc
Q 030076           52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE  131 (183)
Q Consensus        52 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~  131 (183)
                      +.++++.+.|.+++.+.++++|++++.|++++.|++.++||++|.|+.  .|.+++|++++.+.+++.++          
T Consensus        11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg----------   78 (101)
T cd05635          11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG----------   78 (101)
T ss_pred             CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe----------
Confidence            356677777777777777778888888888888877778888888864  56778888888888888876          


Q ss_pred             CCccccCCceeceEECCCCEECCCcEE
Q 030076          132 HGNMLKKPQLLNARIGNHVEIGANSCI  158 (183)
Q Consensus       132 ~~~~~~~~~~~~~~Ig~~~~Ig~~~~v  158 (183)
                                 .++||+++.|++++..
T Consensus        79 -----------~siIg~~v~ig~~~~~   94 (101)
T cd05635          79 -----------HSYLGSWCNLGAGTNN   94 (101)
T ss_pred             -----------eeEECCCCEECCCcee
Confidence                       6888888888888765

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.44  E-value=2.1e-12  Score=95.27  Aligned_cols=36  Identities=33%  Similarity=0.453  Sum_probs=27.6

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      ++.||++||||+++++.++    ++||++++|+++++|.+
T Consensus       129 ~v~IGd~v~IG~~a~I~~g----v~IG~~~vIgagsvV~~  164 (183)
T PRK10092        129 PVTIGNNVWIGGRAVINPG----VTIGDNVVVASGAVVTK  164 (183)
T ss_pred             CeEECCCcEECCCCEECCC----CEECCCCEECCCCEEcc
Confidence            6778888888888888777    77888888887777743

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.43  E-value=2.1e-12  Score=82.22  Aligned_cols=78  Identities=26%  Similarity=0.371  Sum_probs=64.1

Q ss_pred             ECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN  134 (183)
Q Consensus        55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~  134 (183)
                      |++++.|++++.|. ++.|++++.|++++.|. ++.|++++.|++++.|.+++|++++.|++++.+.+            
T Consensus         2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~-~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~------------   67 (79)
T cd05787           2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPP------------   67 (79)
T ss_pred             ccCCCEECCCCEEe-ccEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECC------------
Confidence            46667777777775 57888999999999986 56999999999999999999999999999888876            


Q ss_pred             cccCCceeceEECCCCEECC
Q 030076          135 MLKKPQLLNARIGNHVEIGA  154 (183)
Q Consensus       135 ~~~~~~~~~~~Ig~~~~Ig~  154 (183)
                              ++++++++.||+
T Consensus        68 --------~~~v~~~~~ig~   79 (79)
T cd05787          68 --------GSLISFGVVIGD   79 (79)
T ss_pred             --------CCEEeCCcEeCc
Confidence                    677777777763

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=5.7e-13  Score=111.20  Aligned_cols=92  Identities=27%  Similarity=0.385  Sum_probs=77.1

Q ss_pred             EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCce
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  127 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~  127 (183)
                      .++.+..|+.++.|+.++.| .|++||.+|.||++++|.+. .|+++|.||.+|+|.+++|++++.|+.++.+.+     
T Consensus       329 ~v~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S-~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~-----  401 (673)
T KOG1461|consen  329 IVGANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNS-FIWNNVTIGDNCRIDHAIICDDVKIGEGAILKP-----  401 (673)
T ss_pred             cccceEEecccccccCCCee-ecceecCCCEecCceEEeee-eeecCcEECCCceEeeeEeecCcEeCCCcccCC-----
Confidence            34445555666666666666 48899999999999999654 999999999999999999999999999999987     


Q ss_pred             eeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                                     +++++.++++|++-++.++
T Consensus       402 ---------------g~vl~~~VVv~~~~~l~~n  420 (673)
T KOG1461|consen  402 ---------------GSVLGFGVVVGRNFVLPKN  420 (673)
T ss_pred             ---------------CcEEeeeeEeCCCcccccc
Confidence                           8888888888888888766

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.42  E-value=7.6e-12  Score=93.91  Aligned_cols=88  Identities=20%  Similarity=0.234  Sum_probs=56.4

Q ss_pred             eEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe----------------------------
Q 030076           53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS----------------------------  104 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~----------------------------  104 (183)
                      +.|++++.|++++.|. ++.||.++.|++++.+. ++.||++|.|++++.|.                            
T Consensus        20 ~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~-~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~   97 (204)
T TIGR03308        20 SKLGRYTEIGERTRLR-EVALGDYSYVMRDCDII-YTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDD   97 (204)
T ss_pred             cEeCCCcEECCCcEEe-CCEECCCCEECCCcEEe-eeEECCCCEECCCCEECCCCCCCCccccccccccccccccccccc
Confidence            3444444455544443 45666677777776664 35788888888888773                            


Q ss_pred             ----------ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076          105 ----------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (183)
Q Consensus       105 ----------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~  162 (183)
                                +++|+++++||.++.|.+                    ++.||+++.|+++++|.+..
T Consensus        98 ~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~--------------------gv~Ig~~~~I~~gs~v~~~i  145 (204)
T TIGR03308        98 ADFFAWRRAKRVTIGHDVWIGHGAVILP--------------------GVTIGNGAVIAAGAVVTKDV  145 (204)
T ss_pred             ccccccccCCCeEECCCCEECCCCEECC--------------------CCEECCCCEECCCCEECCCC
Confidence                      445666666666666665                    67777777777777776554

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>PLN02357 serine acetyltransferase

Probab=99.42  E-value=4.7e-12  Score=101.04  Aligned_cols=97  Identities=28%  Similarity=0.457  Sum_probs=61.7

Q ss_pred             ECCCcEECCCcEEcc--CcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccC
Q 030076           55 IDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEH  132 (183)
Q Consensus        55 i~~~~~i~~~~~i~~--~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~  132 (183)
                      |++++.|++++.|..  +++||+++.||+++.|..+++||..   +......+++||++|+||+++.|..          
T Consensus       229 I~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~Ilg----------  295 (360)
T PLN02357        229 IHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILG----------  295 (360)
T ss_pred             eCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEEC----------
Confidence            344444444444432  3455555555555555444444432   1112234688999999999999976          


Q ss_pred             CccccCCceeceEECCCCEECCCcEEcCCC-CCCeEECCCCEE
Q 030076          133 GNMLKKPQLLNARIGNHVEIGANSCIDRGS-WRDTVIGDHSKI  174 (183)
Q Consensus       133 ~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~-~~~~~Ig~~~~I  174 (183)
                                ++.||+++.||++++|.+++ ...+++|..+.+
T Consensus       296 ----------gV~IGdga~IGAgSVV~~dVP~~~~v~G~PArv  328 (360)
T PLN02357        296 ----------NITIGEGAKIGAGSVVLKDVPPRTTAVGNPARL  328 (360)
T ss_pred             ----------CeEECCCCEECCCCEECcccCCCcEEECCCeEE
Confidence                      89999999999999999887 445666766654

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.42  E-value=1.6e-12  Score=98.95  Aligned_cols=100  Identities=21%  Similarity=0.339  Sum_probs=72.6

Q ss_pred             CcEEccceEECCCcEECCCcEEcc------CcEECCCcEECCCCEECCCCEECCCcEECCCcEE---------eceEECC
Q 030076           46 GGIFHQSACIDSTVLIEVGAIVHS------KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL---------SNCIIGD  110 (183)
Q Consensus        46 ~~~i~~~~~i~~~~~i~~~~~i~~------~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i---------~~~~I~~  110 (183)
                      +..|.|++.+..++.|++++++.+      ++.+++.++|.-++.++..++||+||.||-++.|         ..++|++
T Consensus       108 g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igd  187 (271)
T COG2171         108 GVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGD  187 (271)
T ss_pred             ceeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECC
Confidence            355555555555555555555555      5555666666666666666777888888888887         3589999


Q ss_pred             CCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC
Q 030076          111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD  165 (183)
Q Consensus       111 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~  165 (183)
                      +|.||+++.+..                    ++.+|++|+|.+|+.|.++++..
T Consensus       188 ncliGAns~~ve--------------------GV~vGdg~VV~aGv~I~~~tki~  222 (271)
T COG2171         188 NCLIGANSEVVE--------------------GVIVGDGCVVAAGVFITQDTKIY  222 (271)
T ss_pred             ccEeccccceEe--------------------eeEeCCCcEEecceEEeCCcceE
Confidence            999999986665                    99999999999999999995433

>PLN02739 serine acetyltransferase

Probab=99.41  E-value=2.4e-12  Score=102.03  Aligned_cols=50  Identities=26%  Similarity=0.310  Sum_probs=40.9

Q ss_pred             ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCC-CCeEECCCCEE
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW-RDTVIGDHSKI  174 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~-~~~~Ig~~~~I  174 (183)
                      +++||++|+||+++.|..                    ++.||+++.||+|++|.+.++ ..++.|..+.+
T Consensus       257 ~p~IGd~V~IGagA~IlG--------------------~V~IGd~aiIGAGSVV~kDVP~~stvvG~PAri  307 (355)
T PLN02739        257 HPKIGDGALLGACVTILG--------------------NISIGAGAMVAAGSLVLKDVPSHSMVAGNPAKL  307 (355)
T ss_pred             CcEECCCCEEcCCCEEeC--------------------CeEECCCCEECCCCEECCCCCCCcEEEecCCEE
Confidence            478999999999999986                    899999999999999998874 44555555543

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.41  E-value=1.3e-12  Score=108.23  Aligned_cols=125  Identities=11%  Similarity=0.089  Sum_probs=88.5

Q ss_pred             hhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEE---CCCcE-EccCcEECCCcEECCCCEECCCCE
Q 030076           15 TYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLI---EVGAI-VHSKAVLGANVCIGSGTVVGPAVT   90 (183)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i---~~~~~-i~~~~~ig~~~~I~~~~~I~~~~~   90 (183)
                      .+|.|++++..|+.+++.++.......+......+.......+++.+   +.++. +..+++|+++|.| +++.|+ +++
T Consensus       268 gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~~~~i~-~sv  345 (425)
T PRK00725        268 PYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCII-SGAVVR-RSV  345 (425)
T ss_pred             CeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEEeCEEcCCcEE-cCcccc-CCE
Confidence            58999999999999888876543222222222112211222222222   12211 2347889999999 788886 579


Q ss_pred             ECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076           91 IGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (183)
Q Consensus        91 Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~  162 (183)
                      |+++|.|+++|.|.+|+|+++|.|++++.|.                     .++|++++.|++++.+..+.
T Consensus       346 i~~~~~I~~~~~i~~svi~~~~~I~~~~~i~---------------------~~ii~~~~~i~~~~~i~~~~  396 (425)
T PRK00725        346 LFSRVRVNSFSNVEDSVLLPDVNVGRSCRLR---------------------RCVIDRGCVIPEGMVIGEDP  396 (425)
T ss_pred             ECCCCEECCCCEEeeeEEcCCCEECCCCEEe---------------------eEEECCCCEECCCCEECCCC
Confidence            9999999999999999999999999999997                     78999999999998887553

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=7.9e-13  Score=101.89  Aligned_cols=142  Identities=14%  Similarity=0.084  Sum_probs=104.7

Q ss_pred             HhhhhhhhHHHhhhhhhcccchhhhhhh--h-hccc---CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCE
Q 030076           11 RLTKTYKQDFGRFCNLFSTKSDIESRQQ--F-QKWH---NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTV   84 (183)
Q Consensus        11 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~-~~~~---~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~   84 (183)
                      ..+.++|.++.+....+.++...+...+  . ..+.   +....|-.+++|+|++++.++++|+||+.||.++.||++++
T Consensus       241 y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvR  320 (407)
T KOG1460|consen  241 YETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVR  320 (407)
T ss_pred             EecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCce
Confidence            3556889998877777777766654311  1 1111   23346778899999999999999999999999999999999


Q ss_pred             ECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcC
Q 030076           85 VGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR  160 (183)
Q Consensus        85 I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~  160 (183)
                      |++. +|.+++.|.+++.+.+++||..+.||..+.+...+-.-..       ......-+++|+.+.+++.+.+..
T Consensus       321 l~~s-IIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~-------~~~~~a~Tilga~v~v~dev~v~~  388 (407)
T KOG1460|consen  321 LRES-IILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSP-------NLPFAALTILGADVSVEDEVIVLN  388 (407)
T ss_pred             eeee-eeccCcEeeccceEEeeeecccccccceeeecccccccCC-------CCCcceeEEecccceecceeEEee
Confidence            9866 9999999999999999999999999999999863210000       011112467777777776666643

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.40  E-value=5.4e-12  Score=84.86  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=60.9

Q ss_pred             cEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccC
Q 030076           59 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK  138 (183)
Q Consensus        59 ~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~  138 (183)
                      +.|++++.| .++.||++|.|+ ++.|. ++.|++++.|++++.|.+++|++++.|++++.+.                 
T Consensus         2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~-----------------   61 (104)
T cd04651           2 PYIGRRGEV-KNSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR-----------------   61 (104)
T ss_pred             ceecCCCEE-EeEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE-----------------
Confidence            345555555 356777777777 77775 4588888888888888888888888888888886                 


Q ss_pred             CceeceEECCCCEECCCcEEcCCC
Q 030076          139 PQLLNARIGNHVEIGANSCIDRGS  162 (183)
Q Consensus       139 ~~~~~~~Ig~~~~Ig~~~~v~~g~  162 (183)
                          +++|++++.|++++.+..+.
T Consensus        62 ----~siig~~~~Ig~~~~v~~~~   81 (104)
T cd04651          62 ----RAIIDKNVVIPDGVVIGGDP   81 (104)
T ss_pred             ----eEEECCCCEECCCCEECCCc
Confidence                78888888888888887663

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.39  E-value=5.9e-12  Score=91.93  Aligned_cols=100  Identities=25%  Similarity=0.314  Sum_probs=64.2

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC--CCCEECCCcEECCCcEEe-------------------ceE
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVALS-------------------NCI  107 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i~-------------------~~~  107 (183)
                      +++++++.+++.+.    ...++.||+++.|+.++.|.  ..++||+++.|+++|.|.                   ++.
T Consensus        45 ~~~~~~i~~~~~~~----~~~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~  120 (169)
T cd03357          45 VGENVYIEPPFHCD----YGYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPIT  120 (169)
T ss_pred             cCCCCEEcCCEEEE----eCCcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcE
Confidence            34445555554431    11233444444444444443  345677777777777662                   578


Q ss_pred             ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCC-CeEECCCC
Q 030076          108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR-DTVIGDHS  172 (183)
Q Consensus       108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~-~~~Ig~~~  172 (183)
                      |+++|+|++++.|.+                    ++.||++++||+++++.+..+. ..+.|..+
T Consensus       121 IG~~~~Ig~~a~I~~--------------------gv~Ig~~~~VgagavV~~~vp~~~vv~G~PA  166 (169)
T cd03357         121 IGDNVWIGGGVIILP--------------------GVTIGDNSVIGAGSVVTKDIPANVVAAGNPA  166 (169)
T ss_pred             eCCCEEECCCCEEeC--------------------CCEECCCCEECCCCEEccccCCCcEEEcccc
Confidence            999999999999987                    8999999999999999977532 33344443

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.38  E-value=1.2e-11  Score=82.66  Aligned_cols=62  Identities=32%  Similarity=0.446  Sum_probs=42.7

Q ss_pred             CCCEECCCCEECCCcEECCCcE---EeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcE
Q 030076           81 SGTVVGPAVTIGQSTNIGFNVA---LSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSC  157 (183)
Q Consensus        81 ~~~~I~~~~~Ig~~~~Ig~~~~---i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~  157 (183)
                      +++.|++++.|++++.|++++.   +..++|+++++|++++.+..                    .+.|+++++|+++++
T Consensus        27 ~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~--------------------~~~Ig~~~~i~~~~~   86 (101)
T cd03354          27 ETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILG--------------------NITIGDNVKIGANAV   86 (101)
T ss_pred             CCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEEC--------------------cCEECCCCEECCCCE
Confidence            3333333333444444554543   56778899999999988876                    788999999999998


Q ss_pred             EcCCC
Q 030076          158 IDRGS  162 (183)
Q Consensus       158 v~~g~  162 (183)
                      +.++.
T Consensus        87 i~~~~   91 (101)
T cd03354          87 VTKDV   91 (101)
T ss_pred             ECccc
Confidence            88653

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.37  E-value=1.1e-11  Score=96.34  Aligned_cols=89  Identities=18%  Similarity=0.352  Sum_probs=68.1

Q ss_pred             EEccceEECCCcEECCCcEEccCc-EECCCcEECCCCEECCCCEECCCcEECCCcEEec---------eEECCCCEECCC
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKA-VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN---------CIIGDSCIIHNG  117 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~-~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~---------~~I~~~~~Ig~~  117 (183)
                      .+..++++++++.|.+++.|..++ .||+. .|  ++.|+.+++||+++.|+.++.|..         +.|+++|+||.+
T Consensus       161 rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGag  237 (319)
T TIGR03535       161 RVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGAN  237 (319)
T ss_pred             eeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCC
Confidence            333445556666666666666666 46654 45  467778889999999999999633         889999999999


Q ss_pred             cEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       118 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      +.|                      +..||++|.||+|++|.++
T Consensus       238 A~I----------------------GI~IGd~~VVGAGaVVtkg  259 (319)
T TIGR03535       238 SGL----------------------GISLGDDCVVEAGLYVTAG  259 (319)
T ss_pred             CEE----------------------CeEECCCCEECCCCEEeCC
Confidence            999                      5789999999999999988

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=99.37  E-value=2.9e-12  Score=104.04  Aligned_cols=105  Identities=15%  Similarity=0.204  Sum_probs=54.7

Q ss_pred             hhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEE-ccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEEC
Q 030076           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIF-HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG   92 (183)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig   92 (183)
                      ..+|.++++...++.++..++..............+ ....++.+++.++.++.+ +++.|+++|.|+++ .+. +++|+
T Consensus       238 ~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~-~s~i~  314 (361)
T TIGR02091       238 SGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVS-HSVLG  314 (361)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEE-ccEEC
Confidence            468899998988888877776543221111111111 111233444444444433 34455555555443 342 34555


Q ss_pred             CCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076           93 QSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        93 ~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~  121 (183)
                      ++|.|+++|.|.+++|++++.|++++.+.
T Consensus       315 ~~~~I~~~~~i~~sii~~~~~v~~~~~l~  343 (361)
T TIGR02091       315 IRVRIGSGSTVEDSVIMGDVGIGRGAVIR  343 (361)
T ss_pred             CCCEECCCCEEeeeEEeCCCEECCCCEEe
Confidence            55666666665555555555555555554

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=99.37  E-value=4.1e-13  Score=104.64  Aligned_cols=130  Identities=18%  Similarity=0.157  Sum_probs=95.6

Q ss_pred             HhhhhhhhHHHhhhhhhcccchhhhhhhh--hcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCC
Q 030076           11 RLTKTYKQDFGRFCNLFSTKSDIESRQQF--QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA   88 (183)
Q Consensus        11 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~   88 (183)
                      ..++++|.|++++..++......+...+.  .+.+-.+..+..+..+.+.+.++++|.|++++.||++|.|++++.|...
T Consensus       221 ~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s  300 (371)
T KOG1322|consen  221 FDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDS  300 (371)
T ss_pred             EecCchhhhcCCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEee
Confidence            35689999999999999775544433221  1222333445556667777788888888888888888888888888655


Q ss_pred             CEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076           89 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus        89 ~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                       +|..+..++.++.|..++++.++.||.++.|..                    .++||+++.|...-.+..+
T Consensus       301 -~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~--------------------~a~lG~nV~V~d~~~vn~g  352 (371)
T KOG1322|consen  301 -TILGADYYETHSEISSSIVGWNVPIGIWARIDK--------------------NAVLGKNVIVADEDYVNEG  352 (371)
T ss_pred             -EEEccceechhHHHHhhhccccccccCceEEec--------------------ccEeccceEEecccccccc
Confidence             555668888888888888888888888888876                    7788888777766666555

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.36  E-value=1.4e-11  Score=102.26  Aligned_cols=121  Identities=21%  Similarity=0.156  Sum_probs=62.3

Q ss_pred             CcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCc-e-----eecc
Q 030076           58 TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG-F-----FVDE  131 (183)
Q Consensus        58 ~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~-~-----~~~~  131 (183)
                      ++.+.+++.|.+.+.|++++.|++++.|+ +++|+++|.|+. +.+.+++|++++.|++++.|.+...+ +     ....
T Consensus       253 ~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~  330 (430)
T PRK14359        253 TIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLN  330 (430)
T ss_pred             eeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEec
Confidence            34445555555566666666666666665 556666666654 44555666666666555555432111 1     1121


Q ss_pred             CCccccCCceeceEECCCCEECCCcEEcCCC---CCCeEECCCCEECCCCeE
Q 030076          132 HGNMLKKPQLLNARIGNHVEIGANSCIDRGS---WRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       132 ~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~---~~~~~Ig~~~~I~~~~~v  180 (183)
                      .-..-+......++||++|.||+++++....   ...++||+++.|++++.|
T Consensus       331 ~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i  382 (430)
T PRK14359        331 GVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQL  382 (430)
T ss_pred             cccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEE
Confidence            1122234555567777777777766553221   123445555555544443

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.34  E-value=3.3e-11  Score=81.44  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=22.2

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      ++.||++|+|++++.+.++    ++||++|.|++++.|
T Consensus        56 ~v~Ig~~~~ig~~~~i~~g----~~Ig~~~~i~~gs~v   89 (107)
T cd05825          56 PIVIGDGAWVAAEAFVGPG----VTIGEGAVVGARSVV   89 (107)
T ss_pred             CEEECCCCEECCCCEECCC----CEECCCCEECCCCEE
Confidence            5666666666666666665    666666666666665

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.34  E-value=1.6e-11  Score=82.93  Aligned_cols=49  Identities=22%  Similarity=0.371  Sum_probs=39.0

Q ss_pred             eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC-CCCeEECCCC
Q 030076          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS-WRDTVIGDHS  172 (183)
Q Consensus       104 ~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~-~~~~~Ig~~~  172 (183)
                      ..+.|+++|+|+.++.|..                    ++.|++++.|++++++.+.. +.....|..+
T Consensus        55 ~~v~Ig~~~~ig~~~~i~~--------------------g~~Ig~~~~i~~gs~v~~~~~~~~~~~G~Pa  104 (107)
T cd05825          55 APIVIGDGAWVAAEAFVGP--------------------GVTIGEGAVVGARSVVVRDLPAWTVYAGNPA  104 (107)
T ss_pred             CCEEECCCCEECCCCEECC--------------------CCEECCCCEECCCCEEeCcCCCCCEEECCcc
Confidence            4678999999999999987                    89999999999999998764 3334444444

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.34  E-value=8.4e-12  Score=104.36  Aligned_cols=142  Identities=17%  Similarity=0.243  Sum_probs=95.4

Q ss_pred             hhHHHhhhhhhcccc--hhhhhhhhhcccCC-CcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECC
Q 030076           17 KQDFGRFCNLFSTKS--DIESRQQFQKWHNG-GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ   93 (183)
Q Consensus        17 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~   93 (183)
                      |.+++..+.|+..+.  .++...  ...... ...+.++..+++++.|++++.|.+++.||+++.|+++|.|+ +++|++
T Consensus       229 ~~di~~~~~y~~~~~~~~~l~~~--~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~  305 (456)
T PRK09451        229 RLQLARLERVYQAEQAEKLLLAG--VMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGD  305 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC--CEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEe-cCEEcC
Confidence            667777777775442  111100  000011 11133445677888888888888889999999999999996 679999


Q ss_pred             CcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEE-----------cCCC
Q 030076           94 STNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI-----------DRGS  162 (183)
Q Consensus        94 ~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v-----------~~g~  162 (183)
                      +|.|++++.|.+++|++++.|++++.|..                    ++.+++++.|++++.+           ...+
T Consensus       306 ~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~--------------------~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~  365 (456)
T PRK09451        306 DCEISPYSVVEDANLGAACTIGPFARLRP--------------------GAELAEGAHVGNFVEMKKARLGKGSKAGHLT  365 (456)
T ss_pred             CCEEcCCEEEeCCccCCCcEecCceEEeC--------------------CCEECCCceeccceeeeceeeCCCCccCccc
Confidence            99999999999999999999999988875                    3444444444443322           1111


Q ss_pred             -CCCeEECCCCEECCCCeEe
Q 030076          163 -WRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       163 -~~~~~Ig~~~~I~~~~~v~  181 (183)
                       ..++.||+++.|++++++.
T Consensus       366 ~~g~~~ig~~~~ig~~~~~~  385 (456)
T PRK09451        366 YLGDAEIGDNVNIGAGTITC  385 (456)
T ss_pred             cccccEECCCCEEcCCeEEe
Confidence             2347888888888888764

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=2.8e-11  Score=98.22  Aligned_cols=94  Identities=38%  Similarity=0.574  Sum_probs=81.1

Q ss_pred             ECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCc
Q 030076           61 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ  140 (183)
Q Consensus        61 i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~  140 (183)
                      +.. +.|.++++|+++|.|++++.|++.++||++|.|++++.|.+|+|.++|.|++++.+.                   
T Consensus       253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~-------------------  312 (358)
T COG1208         253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIG-------------------  312 (358)
T ss_pred             ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEe-------------------
Confidence            445 788899999999999999999999999999999999999999999999999999999                   


Q ss_pred             eeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          141 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       141 ~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                        +++|+++|.||++. .   ..+ +.+|.++.+.+++.++
T Consensus       313 --~sIi~~~~~ig~~~-~---i~d-~~~g~~~~i~~g~~~~  346 (358)
T COG1208         313 --DSIIGENCKIGASL-I---IGD-VVIGINSEILPGVVVG  346 (358)
T ss_pred             --eeEEcCCcEECCce-e---ecc-eEecCceEEcCceEeC
Confidence              89999999999822 2   224 6677777777776665

>PLN02694 serine O-acetyltransferase

Probab=99.30  E-value=1.3e-11  Score=96.06  Aligned_cols=35  Identities=34%  Similarity=0.382  Sum_probs=21.9

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .++||++|+||++++|..+    ++||++++|+++++|.
T Consensus       212 ~piIGd~V~IGagA~Ilgg----i~IGd~a~IGAgSVV~  246 (294)
T PLN02694        212 HPKIGDGVLIGAGATILGN----VKIGEGAKIGAGSVVL  246 (294)
T ss_pred             ccEECCCeEECCeeEECCC----CEECCCCEECCCCEEC
Confidence            4566666666666666655    6666666666666653

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.30  E-value=3.4e-11  Score=76.11  Aligned_cols=34  Identities=44%  Similarity=0.606  Sum_probs=28.1

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      ++.|+++++++.++.+.++    ++||+++.|++++.|
T Consensus        44 ~~~ig~~~~v~~~~~i~~~----~~ig~~~~i~~~s~v   77 (78)
T cd00208          44 PTIIGDNVEIGANAVIHGG----VKIGDNAVIGAGAVV   77 (78)
T ss_pred             CcEECCCcEECCCCEEeCC----CEECCCCEECcCcEe
Confidence            6788888888888888887    888888888888776

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.29  E-value=4e-11  Score=75.79  Aligned_cols=67  Identities=31%  Similarity=0.506  Sum_probs=42.9

Q ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCcEEec---------eEECCCCEECCCcEECCCCCceeeccCCccccCCcee
Q 030076           72 VLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN---------CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLL  142 (183)
Q Consensus        72 ~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~---------~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~  142 (183)
                      .|++++.|++++.|++.+.|++++.|++++.|.+         +.|+++++++.++.+.+                    
T Consensus         2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~--------------------   61 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG--------------------   61 (78)
T ss_pred             EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeC--------------------
Confidence            3444555555555544455555566666555543         67778888887777765                    


Q ss_pred             ceEECCCCEECCCcEE
Q 030076          143 NARIGNHVEIGANSCI  158 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v  158 (183)
                      ++.|++++.|++++.+
T Consensus        62 ~~~ig~~~~i~~~s~v   77 (78)
T cd00208          62 GVKIGDNAVIGAGAVV   77 (78)
T ss_pred             CCEECCCCEECcCcEe
Confidence            6777777777777765

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.29  E-value=3.1e-11  Score=100.46  Aligned_cols=103  Identities=21%  Similarity=0.291  Sum_probs=74.4

Q ss_pred             eEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECC---------------C---cEECCCcEEeceEECCCCEE
Q 030076           53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ---------------S---TNIGFNVALSNCIIGDSCII  114 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~---------------~---~~Ig~~~~i~~~~I~~~~~I  114 (183)
                      +.|++++.|+ ++.|. +++|+++|.|+++|.|++++.++.               +   +.|+++|.|.+++|+++++|
T Consensus       316 s~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~I  393 (436)
T PLN02241        316 SIISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARI  393 (436)
T ss_pred             eEEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEE
Confidence            6788888888 88884 678999999999999988766673               3   38999999999999999999


Q ss_pred             CCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       115 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      ++++.+.+                    ..-+.+...+|+++++..|.   ++||+++.|.++++|
T Consensus       394 g~~~~i~~--------------------~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~  436 (436)
T PLN02241        394 GKNVVIIN--------------------KDGVQEADREEEGYYIRSGI---VVILKNAVIPDGTVI  436 (436)
T ss_pred             CCCcEEec--------------------ccccCCccccccccEEeCCE---EEEcCCcEeCCCCCC
Confidence            99999975                    23333333344444444330   367777777777653

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.28  E-value=4.3e-11  Score=80.49  Aligned_cols=66  Identities=33%  Similarity=0.516  Sum_probs=32.7

Q ss_pred             EECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076           54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        54 ~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~  122 (183)
                      .|++++.|+ ++.|. ++.+++++.|++++.|. ++.|++++.|++++.|.+++|++++.|++++.+.+
T Consensus        14 ~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~-~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~   79 (104)
T cd04651          14 LVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVE-DSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG   79 (104)
T ss_pred             EECCCCEEc-CeEEE-eCEEeCCCEECCCCEEE-EeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence            334444443 33332 34455555555555553 23555555555555555555555555555555543

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.28  E-value=9.2e-11  Score=79.11  Aligned_cols=87  Identities=25%  Similarity=0.357  Sum_probs=51.7

Q ss_pred             EECCCcEECCCcEEcc--CcEECCCcEECCCCEECCC--CEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceee
Q 030076           54 CIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPA--VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV  129 (183)
Q Consensus        54 ~i~~~~~i~~~~~i~~--~~~ig~~~~I~~~~~I~~~--~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~  129 (183)
                      +|++++.|+++++|.+  ++.||++|.|++++.|...  ..+..+..+........+.|+++|+|++++.+.+       
T Consensus         3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~-------   75 (109)
T cd04647           3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILP-------   75 (109)
T ss_pred             EECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcC-------
Confidence            3444444444444444  5556666666666665432  2223333333344456677777777777777765       


Q ss_pred             ccCCccccCCceeceEECCCCEECCCcEEcC
Q 030076          130 DEHGNMLKKPQLLNARIGNHVEIGANSCIDR  160 (183)
Q Consensus       130 ~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~  160 (183)
                                   ++.|++++++++++.+.+
T Consensus        76 -------------~~~ig~~~~i~~~~~v~~   93 (109)
T cd04647          76 -------------GVTIGDGAVVGAGSVVTK   93 (109)
T ss_pred             -------------CCEECCCCEECCCCEEee
Confidence                         777788888887777763

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.28  E-value=7.2e-11  Score=78.92  Aligned_cols=81  Identities=21%  Similarity=0.274  Sum_probs=65.9

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC---CCCEECCCcEECCCcEEeceEECCCCEECCCc
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVALSNCIIGDSCIIHNGV  118 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~---~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~  118 (183)
                      ++.....+.+++.+.+++.|++++.|++++.|.+++.|++++.|+   .+++|++++.+++++.|.+++|++++.|++++
T Consensus        13 ~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~   92 (101)
T cd05635          13 YIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGT   92 (101)
T ss_pred             EECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECCEECccEEcCCCEecCcCEEeeeEECCCCEECCCc
Confidence            445566677777777777777777777777777777777777776   57789999999999999999999999999999


Q ss_pred             EECC
Q 030076          119 CIGQ  122 (183)
Q Consensus       119 ~i~~  122 (183)
                      .+.+
T Consensus        93 ~~~~   96 (101)
T cd05635          93 NNSD   96 (101)
T ss_pred             eecc
Confidence            8875

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK10191 putative acyl transferase; Provisional

Probab=99.27  E-value=7.9e-11  Score=83.68  Aligned_cols=35  Identities=34%  Similarity=0.375  Sum_probs=23.9

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .+.||++++|++++.+.++    +.||+++.|+++++|.
T Consensus        92 ~~~IGd~~~Ig~~~~I~~~----v~IG~~~~Igags~V~  126 (146)
T PRK10191         92 CPHIGNGVELGANVIILGD----ITIGNNVTVGAGSVVL  126 (146)
T ss_pred             CCEECCCcEEcCCCEEeCC----CEECCCCEECCCCEEC
Confidence            4567777777777777666    7777777777776663

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.26  E-value=2.8e-10  Score=84.03  Aligned_cols=87  Identities=15%  Similarity=0.224  Sum_probs=60.7

Q ss_pred             ceEECCCcE--ECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------------ceEECC
Q 030076           52 SACIDSTVL--IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------------NCIIGD  110 (183)
Q Consensus        52 ~~~i~~~~~--i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------------~~~I~~  110 (183)
                      +++|.++..  ++.++.|++++.|+.+|.|.+.+.|    +||++|.|+++|.|.                   .+.|++
T Consensus        59 ~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~d~~~I----~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd  134 (183)
T PRK10092         59 EAYIEPTFRCDYGYNIFLGNNFYANFDCVMLDVCPI----RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGN  134 (183)
T ss_pred             CEEEeCCEEEeecCCcEEcCCcEECCceEEecCceE----EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECC
Confidence            455555553  3445555555555555554444433    777777777777772                   468999


Q ss_pred             CCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076          111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (183)
Q Consensus       111 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~  162 (183)
                      +|+||+++.|.+                    ++.||++++|++++++.+..
T Consensus       135 ~v~IG~~a~I~~--------------------gv~IG~~~vIgagsvV~~di  166 (183)
T PRK10092        135 NVWIGGRAVINP--------------------GVTIGDNVVVASGAVVTKDV  166 (183)
T ss_pred             CcEECCCCEECC--------------------CCEECCCCEECCCCEEcccc
Confidence            999999999987                    89999999999999998764

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.26  E-value=8.5e-11  Score=79.28  Aligned_cols=89  Identities=33%  Similarity=0.387  Sum_probs=52.3

Q ss_pred             cEECCCcEECCCCEECC--CCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECC
Q 030076           71 AVLGANVCIGSGTVVGP--AVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN  148 (183)
Q Consensus        71 ~~ig~~~~I~~~~~I~~--~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~  148 (183)
                      +.||+++.|++++.|.+  ++.||++|.|+++|.|.+.   ++..+..+..+.               ......++.||+
T Consensus         2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~---~~~~~~~~~~~~---------------~~~~~~~~~Ig~   63 (109)
T cd04647           2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH---NHDIDDPERPIE---------------QGVTSAPIVIGD   63 (109)
T ss_pred             eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECC---CCCCCccccccc---------------cccccCCeEECC
Confidence            34555566666665655  5666666666666666443   122222221110               011122788888


Q ss_pred             CCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          149 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       149 ~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++|++++.+.++    ++|++++.+++++.|.
T Consensus        64 ~~~ig~~~~i~~~----~~ig~~~~i~~~~~v~   92 (109)
T cd04647          64 DVWIGANVVILPG----VTIGDGAVVGAGSVVT   92 (109)
T ss_pred             CCEECCCCEEcCC----CEECCCCEECCCCEEe
Confidence            8888888888766    7777777777777663

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=99.25  E-value=8.8e-11  Score=87.05  Aligned_cols=73  Identities=23%  Similarity=0.136  Sum_probs=46.8

Q ss_pred             ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      +.+|++++.+++++.+....+........... .....+++||++||||++++|.+|    ++||++++|+++|+|.+
T Consensus        87 ~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~-~~~~~~v~IG~~vwIG~~a~IlpG----V~IG~gavigagsVVtk  159 (190)
T COG0110          87 GITIGDNVVVGPNVTIYTNSHPGDFVTANIGA-LVGAGPVTIGEDVWIGAGAVILPG----VTIGEGAVIGAGSVVTK  159 (190)
T ss_pred             CeEECCCceECCCcEEecCCCCCChhhcccCC-ceecCCeEECCCeEEcCccEECCC----EEECCCcEEeeCCEEeC
Confidence            34566666666666665431111000000000 222347999999999999999998    99999999999999864

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.24  E-value=3e-10  Score=82.36  Aligned_cols=81  Identities=26%  Similarity=0.370  Sum_probs=66.1

Q ss_pred             ccCCCcEEccceEECCCcEECC--CcEEccCcEECCCcEECCCCEECCC--------CEECCCcEECCCcEEe-ceEECC
Q 030076           42 WHNGGGIFHQSACIDSTVLIEV--GAIVHSKAVLGANVCIGSGTVVGPA--------VTIGQSTNIGFNVALS-NCIIGD  110 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~I~~~~~I~~~--------~~Ig~~~~Ig~~~~i~-~~~I~~  110 (183)
                      ++..+..|++.+.|++++.|++  ++.|++++.||++|.|++++.|+..        .+|+++|.|+.++.|. +++|++
T Consensus        57 ~~~~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~  136 (162)
T TIGR01172        57 RVLTGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGE  136 (162)
T ss_pred             heeeCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECC
Confidence            3445677888888888888864  4788888899999999999988743        5899999999999984 478999


Q ss_pred             CCEECCCcEECC
Q 030076          111 SCIIHNGVCIGQ  122 (183)
Q Consensus       111 ~~~Ig~~~~i~~  122 (183)
                      ++.|++++.+..
T Consensus       137 ~~~Iga~s~V~~  148 (162)
T TIGR01172       137 NAKIGANSVVLK  148 (162)
T ss_pred             CCEECCCCEECC
Confidence            999999888875

Cysteine biosynthesis

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.24  E-value=1.1e-10  Score=95.48  Aligned_cols=96  Identities=30%  Similarity=0.439  Sum_probs=75.8

Q ss_pred             CCcEEccceEECCCcEECCCcEEcc---CcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVHS---KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~  121 (183)
                      ....|++++.+ .++.|+++|.|++   ++.|+++|.|+++|.|. +++|+++|.|+++|.|.+++|++++.|++++.+.
T Consensus       281 ~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~-~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~  358 (380)
T PRK05293        281 PPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVK-DSVIMPGAKIGENVVIERAIIGENAVIGDGVIIG  358 (380)
T ss_pred             CCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEE-CCEEeCCCEECCCeEEeEEEECCCCEECCCCEEc
Confidence            34556666666 3556788887764   57899999999999996 5599999999999999999999999999999998


Q ss_pred             CCCCceeeccCCccccCCceeceEECCCCEECCCcEE
Q 030076          122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI  158 (183)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v  158 (183)
                      +...                .+.+||+++.|.+++++
T Consensus       359 ~~~~----------------~~~~ig~~~~~~~~~~~  379 (380)
T PRK05293        359 GGKE----------------VITVIGENEVIGVGTVI  379 (380)
T ss_pred             CCCc----------------eeEEEeCCCCCCCCcEe
Confidence            6311                13778888877777665

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.23  E-value=4.9e-11  Score=92.63  Aligned_cols=35  Identities=29%  Similarity=0.239  Sum_probs=32.2

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ..+||++|+||+|++|.++    ++||++++|+++++|.
T Consensus       193 ~p~IGd~V~IGaga~Ilgg----v~IG~~a~IGAgSvV~  227 (273)
T PRK11132        193 HPKIREGVMIGAGAKILGN----IEVGRGAKIGAGSVVL  227 (273)
T ss_pred             CCEECCCcEEcCCCEEcCC----CEECCCCEECCCCEEC
Confidence            4689999999999999988    9999999999999984

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.23  E-value=1.6e-10  Score=77.15  Aligned_cols=34  Identities=38%  Similarity=0.479  Sum_probs=27.1

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      .++|+++++|++++.+..+    ++||+++.|++++.|
T Consensus        54 ~~~Ig~~~~Ig~~~~i~~~----~~Ig~~~~i~~~~~i   87 (101)
T cd03354          54 HPTIGDNVVIGAGAKILGN----ITIGDNVKIGANAVV   87 (101)
T ss_pred             CCEECCCcEEcCCCEEECc----CEECCCCEECCCCEE
Confidence            6788888888888888776    778888888887776

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PLN02357 serine acetyltransferase

Probab=99.22  E-value=8.7e-11  Score=93.89  Aligned_cols=74  Identities=28%  Similarity=0.434  Sum_probs=38.7

Q ss_pred             EEccceEECCCcEECC--CcEEccCcEECCCcEECCCCEECC--------CCEECCCcEECCCcEE-eceEECCCCEECC
Q 030076           48 IFHQSACIDSTVLIEV--GAIVHSKAVLGANVCIGSGTVVGP--------AVTIGQSTNIGFNVAL-SNCIIGDSCIIHN  116 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~I~~~~~I~~--------~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~  116 (183)
                      .|++.+.|++++.|..  +++|+++++||++|.|..++.|++        .++||++|.||.++.| .+++||+++.||+
T Consensus       228 dI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGA  307 (360)
T PLN02357        228 DIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGA  307 (360)
T ss_pred             eeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECC
Confidence            4555555555555543  445555555555555555555543        1455555555555554 3455555555555


Q ss_pred             CcEEC
Q 030076          117 GVCIG  121 (183)
Q Consensus       117 ~~~i~  121 (183)
                      ++.|.
T Consensus       308 gSVV~  312 (360)
T PLN02357        308 GSVVL  312 (360)
T ss_pred             CCEEC
Confidence            55554

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=99.19  E-value=2.4e-10  Score=91.85  Aligned_cols=74  Identities=31%  Similarity=0.428  Sum_probs=61.7

Q ss_pred             EccceEECCC-----cEECCCcEEcc---CcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEE
Q 030076           49 FHQSACIDST-----VLIEVGAIVHS---KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI  120 (183)
Q Consensus        49 i~~~~~i~~~-----~~i~~~~~i~~---~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i  120 (183)
                      ..|++++..+     ..++.||+|.+   +++|+.++.|++++.|++. +|.++|.||++|+|++++|+++|.|++|+.|
T Consensus       282 ~~pPak~~~~s~v~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~~s-vim~~~~IG~~~~l~~aIIDk~v~I~~g~~i  360 (393)
T COG0448         282 NLPPAKFVNDSEVSNSLVAGGCIISGTVENSVLFRGVRIGKGSVIENS-VIMPDVEIGEGAVLRRAIIDKNVVIGEGVVI  360 (393)
T ss_pred             CCCCceEecCceEeeeeeeCCeEEEeEEEeeEEecCeEECCCCEEEee-EEeCCcEECCCCEEEEEEeCCCcEeCCCcEE
Confidence            4455555443     33677777775   6789999999999999755 9999999999999999999999999999999


Q ss_pred             CCC
Q 030076          121 GQD  123 (183)
Q Consensus       121 ~~~  123 (183)
                      +.+
T Consensus       361 ~~~  363 (393)
T COG0448         361 GGD  363 (393)
T ss_pred             cCC
Confidence            974

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.17  E-value=3.7e-10  Score=91.54  Aligned_cols=87  Identities=22%  Similarity=0.303  Sum_probs=46.3

Q ss_pred             cEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCC
Q 030076           71 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHV  150 (183)
Q Consensus        71 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~  150 (183)
                      +.+.+.+.|++++.| .+++|...|.||++|.|.+++|+++|.|++++.|++                +....++|++++
T Consensus       249 ~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~----------------~~i~~s~i~~~~  311 (353)
T TIGR01208       249 SKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRD----------------AEVEHSIVLDES  311 (353)
T ss_pred             CEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEee----------------eEEEeeEEcCCC
Confidence            344444444444544 333444455555555555666666666666666652                011156666677


Q ss_pred             EECCCc-EEcCCCCCCeEECCCCEECCCCe
Q 030076          151 EIGANS-CIDRGSWRDTVIGDHSKIDNLVQ  179 (183)
Q Consensus       151 ~Ig~~~-~v~~g~~~~~~Ig~~~~I~~~~~  179 (183)
                      .|+.++ .+. +    ++|++++.|+++..
T Consensus       312 ~i~~~~~~~~-~----~ii~~~~~i~~~~~  336 (353)
T TIGR01208       312 VIEGVQARIV-D----SVIGKKVRIKGNRR  336 (353)
T ss_pred             EEcCCcceee-c----CEEcCCCEECCCcc
Confidence            666552 332 2    55555555555543

Alternate name: dTDP-D-glucose synthase

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.17  E-value=2.9e-11  Score=88.21  Aligned_cols=90  Identities=36%  Similarity=0.453  Sum_probs=56.9

Q ss_pred             ECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCc
Q 030076           61 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ  140 (183)
Q Consensus        61 i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~  140 (183)
                      +..++.|+|++.||++.+|.++.-|    +|++.+           +||++|.|-.+++++......            .
T Consensus        64 ~~~gieIhp~A~IG~g~fIdHg~Gv----VIgeta-----------~IGddv~I~~gVTLGgtg~~~------------g  116 (194)
T COG1045          64 FLFGIEIHPGAKIGRGLFIDHGTGV----VIGETA-----------VIGDDVTIYHGVTLGGTGKES------------G  116 (194)
T ss_pred             hhcceeeCCCCeECCceEEcCCceE----EEccee-----------EECCCeEEEcceEecCCCCcC------------C
Confidence            3446666666666666666665322    444433           344555555555555421000            0


Q ss_pred             eeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          141 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       141 ~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +..-.||+++.||+|+.|...    -.||+++.|||||+|-
T Consensus       117 ~RhPtIg~~V~IGagAkILG~----I~IGd~akIGA~sVVl  153 (194)
T COG1045         117 KRHPTIGNGVYIGAGAKILGN----IEIGDNAKIGAGSVVL  153 (194)
T ss_pred             CCCCccCCCeEECCCCEEEcc----eEECCCCEECCCceEc
Confidence            113469999999999999877    9999999999999984

>PLN02739 serine acetyltransferase

Probab=99.17  E-value=1.6e-10  Score=91.76  Aligned_cols=35  Identities=23%  Similarity=0.214  Sum_probs=31.7

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ..+||++|+||+|++|.++    +.||++++|++|++|.
T Consensus       257 ~p~IGd~V~IGagA~IlG~----V~IGd~aiIGAGSVV~  291 (355)
T PLN02739        257 HPKIGDGALLGACVTILGN----ISIGAGAMVAAGSLVL  291 (355)
T ss_pred             CcEECCCCEEcCCCEEeCC----eEECCCCEECCCCEEC
Confidence            5789999999999999988    9999999999999884

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=99.16  E-value=9.2e-11  Score=81.07  Aligned_cols=102  Identities=19%  Similarity=0.318  Sum_probs=84.3

Q ss_pred             ceEECCCcEECCCcEEcc---CcEECCCcEECCCCEECC------------CCEECCCcEECCCcEEeceEECCCCEECC
Q 030076           52 SACIDSTVLIEVGAIVHS---KAVLGANVCIGSGTVVGP------------AVTIGQSTNIGFNVALSNCIIGDSCIIHN  116 (183)
Q Consensus        52 ~~~i~~~~~i~~~~~i~~---~~~ig~~~~I~~~~~I~~------------~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~  116 (183)
                      +..+.+.+.+.++++|.+   ++.+|..|.+++++.|++            ...||+.+.|++.|++..+.|+..+++|.
T Consensus        33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gk  112 (184)
T KOG3121|consen   33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGK  112 (184)
T ss_pred             eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecc
Confidence            344566777788888875   778999999999999986            34899999999999999999999999999


Q ss_pred             CcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCC
Q 030076          117 GVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL  177 (183)
Q Consensus       117 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~  177 (183)
                      ++.|++                    +|++.+-|+|-+++++.+.    +.+.+-+.++.+
T Consensus       113 naviGr--------------------rCVlkdCc~ild~tVlPpe----t~vppy~~~~g~  149 (184)
T KOG3121|consen  113 NAVIGR--------------------RCVLKDCCRILDDTVLPPE----TLVPPYSTIGGN  149 (184)
T ss_pred             ceeEcC--------------------ceEhhhheeccCCcccCcc----cccCCceEEcCC
Confidence            999998                    8999999999999998877    666665555543

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=1.2e-10  Score=92.67  Aligned_cols=82  Identities=28%  Similarity=0.500  Sum_probs=60.6

Q ss_pred             cCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECC
Q 030076           69 SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN  148 (183)
Q Consensus        69 ~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~  148 (183)
                      ..+.+++++.|++++.|. .++||.+|.||+++.|.+|++.+++.||+|+.|.                     +|+||.
T Consensus       333 ~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~Ie---------------------nsIIg~  390 (433)
T KOG1462|consen  333 ADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIE---------------------NSIIGM  390 (433)
T ss_pred             hhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCccee---------------------cceecc
Confidence            344555555666666664 3488888888888888888888888888888887                     788888


Q ss_pred             CCEECCCcEEcCCCCCCeEECCCCEECCC
Q 030076          149 HVEIGANSCIDRGSWRDTVIGDHSKIDNL  177 (183)
Q Consensus       149 ~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~  177 (183)
                      ++.||+++.+.     +|.||++=++.+.
T Consensus       391 gA~Ig~gs~L~-----nC~Ig~~yvVeak  414 (433)
T KOG1462|consen  391 GAQIGSGSKLK-----NCIIGPGYVVEAK  414 (433)
T ss_pred             cceecCCCeee-----eeEecCCcEEccc
Confidence            88888888775     3777777777643

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=99.10  E-value=1.1e-09  Score=77.97  Aligned_cols=37  Identities=35%  Similarity=0.335  Sum_probs=31.4

Q ss_pred             eeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          141 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       141 ~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ..+++||++|+|++++.+.++    ++||++++|+++++|.
T Consensus        71 ~~~~~Ig~~~~Ig~~~~i~~g----v~Ig~~~vIgags~V~  107 (145)
T cd03349          71 KGDVIIGNDVWIGHGATILPG----VTIGDGAVIAAGAVVT  107 (145)
T ss_pred             cCCcEECCCCEECCCCEEeCC----CEECCCCEECCCCEEc
Confidence            348889999999999999887    8888888888888874

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.09  E-value=5.9e-10  Score=92.63  Aligned_cols=69  Identities=26%  Similarity=0.391  Sum_probs=58.6

Q ss_pred             ceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECC------------------CcEECCCcEEeceEECCCCE
Q 030076           52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQ------------------STNIGFNVALSNCIIGDSCI  113 (183)
Q Consensus        52 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~------------------~~~Ig~~~~i~~~~I~~~~~  113 (183)
                      ++.|++++.| +++.|. +++|+++|.|++++.|.++++++.                  ++.|+++|.|.+++|+++|.
T Consensus       308 ~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~  385 (429)
T PRK02862        308 ESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNAR  385 (429)
T ss_pred             eCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcE
Confidence            3678888888 677775 689999999999999977744452                  79999999999999999999


Q ss_pred             ECCCcEECC
Q 030076          114 IHNGVCIGQ  122 (183)
Q Consensus       114 Ig~~~~i~~  122 (183)
                      |++++.+.+
T Consensus       386 i~~~~~~~~  394 (429)
T PRK02862        386 IGNNVRIVN  394 (429)
T ss_pred             ECCCcEEec
Confidence            999999975

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=6.1e-10  Score=88.71  Aligned_cols=88  Identities=22%  Similarity=0.284  Sum_probs=69.9

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCcee
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF  128 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~  128 (183)
                      ++..+.+++++.|++++.| ..++||.+|.||+.+.|. ++.+++++.||+++.|++|+|+.++.|+.++.+.       
T Consensus       331 ~g~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~-nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~-------  401 (433)
T KOG1462|consen  331 VGADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVA-NSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLK-------  401 (433)
T ss_pred             cchhhccCCCceeccccee-eeeeecCCccccCCcEEE-eeEeecCcEecCCcceecceecccceecCCCeee-------
Confidence            3344455555555555544 356789999999999995 4599999999999999999999999999999998       


Q ss_pred             eccCCccccCCceeceEECCCCEECCCcEEc
Q 030076          129 VDEHGNMLKKPQLLNARIGNHVEIGANSCID  159 (183)
Q Consensus       129 ~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~  159 (183)
                                    +|.||.+-++.+.....
T Consensus       402 --------------nC~Ig~~yvVeak~~~~  418 (433)
T KOG1462|consen  402 --------------NCIIGPGYVVEAKGKHG  418 (433)
T ss_pred             --------------eeEecCCcEEccccccc
Confidence                          78888888887665544

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=99.05  E-value=4.6e-10  Score=83.33  Aligned_cols=59  Identities=32%  Similarity=0.452  Sum_probs=33.8

Q ss_pred             EECCCCEECCCcEECCCcEE---------eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECC
Q 030076           84 VVGPAVTIGQSTNIGFNVAL---------SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA  154 (183)
Q Consensus        84 ~I~~~~~Ig~~~~Ig~~~~i---------~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~  154 (183)
                      +|++-++||++|+|.+++.+         ++..|+++++||.+++|.+                    ++.||++++|++
T Consensus       170 vigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILg--------------------nV~IGegavIaA  229 (269)
T KOG4750|consen  170 VIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILG--------------------NVTIGEGAVIAA  229 (269)
T ss_pred             eecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeC--------------------CeeECCCcEEec
Confidence            34444444555555554444         2456666666666666654                    666666666666


Q ss_pred             CcEEcCCC
Q 030076          155 NSCIDRGS  162 (183)
Q Consensus       155 ~~~v~~g~  162 (183)
                      |++|..++
T Consensus       230 GsvV~kDV  237 (269)
T KOG4750|consen  230 GSVVLKDV  237 (269)
T ss_pred             cceEEecc
Confidence            66666555

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.05  E-value=1.6e-09  Score=89.43  Aligned_cols=71  Identities=27%  Similarity=0.452  Sum_probs=62.6

Q ss_pred             ccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCC
Q 030076           50 HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD  123 (183)
Q Consensus        50 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~  123 (183)
                      .++++|++++.|+ ++.|. +++|+++|.|+++|.|. +++|+++|.|+++|.|.+++|++++.|++++.+..+
T Consensus       313 ~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~-~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~  383 (407)
T PRK00844        313 AQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVE-DSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGVD  383 (407)
T ss_pred             EEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCCEECCC
Confidence            3457788888887 78886 58999999999999997 458999999999999999999999999999999863

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.96  E-value=1.7e-08  Score=71.88  Aligned_cols=42  Identities=24%  Similarity=0.340  Sum_probs=36.7

Q ss_pred             EeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCC
Q 030076          103 LSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR  164 (183)
Q Consensus       103 i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~  164 (183)
                      ..+++|+++|+|+.++.+..                    ++.||++++|+++++|.+..++
T Consensus        71 ~~~~~Ig~~~~Ig~~~~i~~--------------------gv~Ig~~~vIgags~V~~~v~~  112 (145)
T cd03349          71 KGDVIIGNDVWIGHGATILP--------------------GVTIGDGAVIAAGAVVTKDVPP  112 (145)
T ss_pred             cCCcEECCCCEECCCCEEeC--------------------CCEECCCCEECCCCEEccccCC
Confidence            35789999999999999987                    8999999999999999876533

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.95  E-value=6.7e-09  Score=84.38  Aligned_cols=82  Identities=21%  Similarity=0.281  Sum_probs=68.3

Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEE
Q 030076           73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI  152 (183)
Q Consensus        73 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I  152 (183)
                      +.+.+.|++.+.+ .++.|+++|.|+.+ .+.+++|+++|.|++++.|.                     +++|++++.|
T Consensus       280 ~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~---------------------~sii~~~~~v  336 (361)
T TIGR02091       280 LPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVE---------------------DSVIMGDVGI  336 (361)
T ss_pred             CCCceEecCCCEE-ECCEECCCCEECCC-EEEccEECCCCEECCCCEEe---------------------eeEEeCCCEE
Confidence            3445555566655 34588999999876 88899999999999999998                     8999999999


Q ss_pred             CCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          153 GANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       153 g~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      +.++.+. +    ++||+++.|++++.|++
T Consensus       337 ~~~~~l~-~----~ivg~~~~i~~~~~i~~  361 (361)
T TIGR02091       337 GRGAVIR-N----AIIDKNVRIGEGVVIGN  361 (361)
T ss_pred             CCCCEEe-e----eEECCCCEECCCCEeCC
Confidence            9999985 4    99999999999999874

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.93  E-value=1.7e-08  Score=74.72  Aligned_cols=49  Identities=27%  Similarity=0.380  Sum_probs=41.7

Q ss_pred             ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCC-CeEECCCCE
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR-DTVIGDHSK  173 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~-~~~Ig~~~~  173 (183)
                      .++||++|+||+++.|.+                    +++||++++||+++++.++.++ .++.|..+.
T Consensus       124 ~v~IG~~vwIG~~a~Ilp--------------------GV~IG~gavigagsVVtkdvp~~~iv~G~Pa~  173 (190)
T COG0110         124 PVTIGEDVWIGAGAVILP--------------------GVTIGEGAVIGAGSVVTKDVPPYGIVAGNPAR  173 (190)
T ss_pred             CeEECCCeEEcCccEECC--------------------CEEECCCcEEeeCCEEeCccCCCeEEeCCcce
Confidence            489999999999999998                    9999999999999999988743 455555553

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=9.4e-09  Score=79.69  Aligned_cols=97  Identities=22%  Similarity=0.272  Sum_probs=77.8

Q ss_pred             cEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceece
Q 030076           65 AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA  144 (183)
Q Consensus        65 ~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  144 (183)
                      +.|..+++|.+++++.+.+.|++++.||.++.||++++|.+|+|-+++.|..|+.+.                     .+
T Consensus       283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl---------------------~s  341 (407)
T KOG1460|consen  283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVL---------------------HS  341 (407)
T ss_pred             ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEE---------------------ee
Confidence            457778888888888888888888999999999999999999999999999999998                     78


Q ss_pred             EECCCCEECCCcEEcCC-C--------CCCeEECCCCEECCCCeEee
Q 030076          145 RIGNHVEIGANSCIDRG-S--------WRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       145 ~Ig~~~~Ig~~~~v~~g-~--------~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      +||.++.||.-+.+..- +        ...|+.|+.+.+++.+.|-+
T Consensus       342 Iigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~  388 (407)
T KOG1460|consen  342 IIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLN  388 (407)
T ss_pred             eecccccccceeeecccccccCCCCCcceeEEecccceecceeEEee
Confidence            99999999977766322 1        12367777777776666544

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.87  E-value=1.7e-08  Score=82.30  Aligned_cols=77  Identities=16%  Similarity=0.218  Sum_probs=63.6

Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECC
Q 030076           75 ANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA  154 (183)
Q Consensus        75 ~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~  154 (183)
                      +.+.|++++.| .++.||++|.|+  +.|.+++|+++|.|++++.|.                     .++|++++.|++
T Consensus       277 ~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~---------------------~sii~~~~~I~~  332 (369)
T TIGR02092       277 PPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIK---------------------NCIIMQRTVIGE  332 (369)
T ss_pred             CCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEE---------------------eeEEeCCCEECC
Confidence            56666666766 456888889996  468899999999999999997                     799999999999


Q ss_pred             CcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          155 NSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       155 ~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      ++.+..     ++||++++|++++.+
T Consensus       333 ~~~i~~-----~ii~~~~~v~~~~~~  353 (369)
T TIGR02092       333 GAHLEN-----VIIDKDVVIEPNVKI  353 (369)
T ss_pred             CCEEEE-----EEECCCCEECCCCEe
Confidence            998853     788888888887766

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.86  E-value=2.3e-08  Score=83.11  Aligned_cols=69  Identities=28%  Similarity=0.504  Sum_probs=61.1

Q ss_pred             cceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076           51 QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        51 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~  122 (183)
                      .++.|++++.| +++.|. +++|+++|.|+++|.|. +++|+++|.|+++|.|.+++|++++.|++++.|++
T Consensus       326 ~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~-~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~  394 (425)
T PRK00725        326 INSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVE-DSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGE  394 (425)
T ss_pred             EeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEe-eeEEcCCCEECCCCEEeeEEECCCCEECCCCEECC
Confidence            35778888888 677775 79999999999999995 55999999999999999999999999999999985

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.85  E-value=1.3e-08  Score=75.73  Aligned_cols=35  Identities=31%  Similarity=0.299  Sum_probs=32.6

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      + .||+|+|||++++|.++    +.||+|++|++||+|.+
T Consensus       201 P-~Igd~vliGaGvtILgn----V~IGegavIaAGsvV~k  235 (269)
T KOG4750|consen  201 P-KIGDNVLIGAGVTILGN----VTIGEGAVIAAGSVVLK  235 (269)
T ss_pred             C-cccCCeEEccccEEeCC----eeECCCcEEeccceEEe
Confidence            5 89999999999999988    99999999999999853

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.84  E-value=5.5e-09  Score=81.87  Aligned_cols=95  Identities=23%  Similarity=0.326  Sum_probs=76.2

Q ss_pred             ECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCc
Q 030076           61 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ  140 (183)
Q Consensus        61 i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~  140 (183)
                      +..++.|..++.+.+-..+|++|.|+++++||.+|.|+++++|.+|.|..+.++...+.|.                   
T Consensus       255 ~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~-------------------  315 (371)
T KOG1322|consen  255 LLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEIS-------------------  315 (371)
T ss_pred             ccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHH-------------------
Confidence            3344555555666666666677777777788888999999999999999999999999998                   


Q ss_pred             eeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          141 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       141 ~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                        .+++|.++.||-++.+...    ++||++.+|.+-.++
T Consensus       316 --s~ivg~~~~IG~~~~id~~----a~lG~nV~V~d~~~v  349 (371)
T KOG1322|consen  316 --SSIVGWNVPIGIWARIDKN----AVLGKNVIVADEDYV  349 (371)
T ss_pred             --hhhccccccccCceEEecc----cEeccceEEeccccc
Confidence              7888999999999999877    999999988876665

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.78  E-value=5.2e-08  Score=85.38  Aligned_cols=37  Identities=19%  Similarity=0.434  Sum_probs=22.9

Q ss_pred             ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      .++||++|.||.++.|.+                    ++.||+++.|++++.+.+|
T Consensus       160 ~i~IG~~~~IG~~s~I~~--------------------g~~Igd~a~vgagS~V~~g  196 (695)
T TIGR02353       160 PVTLGRDAFIGTRSTLDI--------------------DTSIGDGAQLGHGSALQGG  196 (695)
T ss_pred             CcEECCCcEECCCCEEcC--------------------CCEECCCCEECCCCEecCC
Confidence            346666666666666655                    5666666666666666553

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.77  E-value=1.3e-08  Score=70.55  Aligned_cols=53  Identities=17%  Similarity=0.324  Sum_probs=42.1

Q ss_pred             CcEECCCcEECCCCEECC---CCEECCCcEECCCcEEe-------------ceEECCCCEECCCcEECC
Q 030076           70 KAVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVALS-------------NCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        70 ~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i~-------------~~~I~~~~~Ig~~~~i~~  122 (183)
                      |..+.+.+.|.++++|++   ++.+|..|.+++++.|+             +..||++++|+.++.+..
T Consensus        33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnA  101 (184)
T KOG3121|consen   33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNA  101 (184)
T ss_pred             eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeeh
Confidence            556777888888888876   56888888888888884             467888888888888875

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.72  E-value=9.9e-08  Score=83.64  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=27.3

Q ss_pred             eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       104 ~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      .+++||++|+||+++.+.+                    ++.||+++.|++++.+.+|
T Consensus       644 ~~v~IG~~~~IG~~a~V~~--------------------g~~IGd~a~Ig~~SvV~~g  681 (695)
T TIGR02353       644 DTVTIGDGATLGPGAIVLY--------------------GVVMGEGSVLGPDSLVMKG  681 (695)
T ss_pred             CCeEECCCCEECCCCEECC--------------------CCEECCCCEECCCCEEcCC
Confidence            4567777777777777765                    6777777777777777665

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.59  E-value=7.8e-08  Score=67.22  Aligned_cols=48  Identities=10%  Similarity=0.131  Sum_probs=19.9

Q ss_pred             CCCcEECCCcEEccCcEECCCcEECCCCEEC---CCCEECCCcEECCCcEE
Q 030076           56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVAL  103 (183)
Q Consensus        56 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~---~~~~Ig~~~~Ig~~~~i  103 (183)
                      .+++.+...+.|.+.+.|+++|.|.+.+++.   +..+||+|+.|.+.+.|
T Consensus        12 ap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i   62 (190)
T KOG4042|consen   12 APSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVI   62 (190)
T ss_pred             cCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHH
Confidence            3333333333333334444444444444332   12345555555555544

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.45  E-value=2.1e-07  Score=65.13  Aligned_cols=74  Identities=24%  Similarity=0.314  Sum_probs=36.6

Q ss_pred             EccceEECCCcEECCCcEEccCc---------EECCCcEECCCCEECC-------------CCEECCCcEECCCcEEece
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKA---------VLGANVCIGSGTVVGP-------------AVTIGQSTNIGFNVALSNC  106 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~---------~ig~~~~I~~~~~I~~-------------~~~Ig~~~~Ig~~~~i~~~  106 (183)
                      +...+.|.+.+.|.++|+++|.+         +||+|+.|++.+.|.+             .-+||.+-...=+|...-.
T Consensus        17 VCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~   96 (190)
T KOG4042|consen   17 VCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAK   96 (190)
T ss_pred             EEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhh
Confidence            33344555666667777776655         3455555555555533             1133433333333333334


Q ss_pred             EECCCCEECCCcEECC
Q 030076          107 IIGDSCIIHNGVCIGQ  122 (183)
Q Consensus       107 ~I~~~~~Ig~~~~i~~  122 (183)
                      .+|++..|+..+++++
T Consensus        97 kvGd~NVieskayvg~  112 (190)
T KOG4042|consen   97 KVGDRNVIESKAYVGD  112 (190)
T ss_pred             hhcCcceEeeeeEecC
Confidence            4555555555555554

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.34  E-value=6.6e-07  Score=47.45  Aligned_cols=33  Identities=42%  Similarity=0.523  Sum_probs=22.8

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ++.||++|+|++++.+  |    +.||+++.|++|++|.
T Consensus         1 pv~IG~~~~ig~~~~i--g----i~igd~~~i~~g~~I~   33 (34)
T PF14602_consen    1 PVTIGDNCFIGANSTI--G----ITIGDGVIIGAGVVIT   33 (34)
T ss_dssp             TEEE-TTEEE-TT-EE--T----SEE-TTEEE-TTEEEE
T ss_pred             CeEECCCEEECccccc--C----CEEcCCCEECCCCEEc
Confidence            3678888888888887  4    8888888888888875

...

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=98.24  E-value=1.1e-06  Score=47.12  Aligned_cols=34  Identities=44%  Similarity=0.657  Sum_probs=23.5

Q ss_pred             eEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          144 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       144 ~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +.|+++++|++++.+.++    +.||+++.|++++.|+
T Consensus         2 ~~Ig~~~~i~~~~~i~~~----~~Ig~~~~I~~~~~I~   35 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGG----VVIGDNCVIGPGVVIG   35 (36)
T ss_dssp             EEEETTEEEETTEEEETT----EEE-TTEEEETTEEEE
T ss_pred             CEEcCCCEECCCcEecCC----CEECCCCEEcCCCEEC
Confidence            566777777777777766    7777777777777765

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=98.20  E-value=8.9e-06  Score=61.08  Aligned_cols=70  Identities=21%  Similarity=0.263  Sum_probs=50.8

Q ss_pred             cEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCC
Q 030076           71 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHV  150 (183)
Q Consensus        71 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~  150 (183)
                      ++..+++.||+++.+.-. ++++...+|+++.|.+.++.+++.|+.+|.+..                    +++.++++
T Consensus        17 ivv~gdViIG~nS~l~~~-V~g~~iivge~v~i~Gdiva~diridmw~kv~g--------------------NV~ve~da   75 (277)
T COG4801          17 IVVKGDVIIGKNSMLKYG-VVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTG--------------------NVIVENDA   75 (277)
T ss_pred             EEEeccEEEcccceeeee-eeeeeEEeccCcEEeeeEEecceeeeeeeEeec--------------------cEEEcCce
Confidence            345556666677777555 778888888888888878888888888888876                    67777777


Q ss_pred             EECCCcEEcCC
Q 030076          151 EIGANSCIDRG  161 (183)
Q Consensus       151 ~Ig~~~~v~~g  161 (183)
                      .||+.+.|..-
T Consensus        76 yiGE~~sI~gk   86 (277)
T COG4801          76 YIGEFSSIKGK   86 (277)
T ss_pred             EEeccceeeee
Confidence            77777766543

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=98.09  E-value=2.5e-06  Score=45.72  Aligned_cols=32  Identities=44%  Similarity=0.721  Sum_probs=13.1

Q ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCcEE
Q 030076           72 VLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL  103 (183)
Q Consensus        72 ~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i  103 (183)
                      .|++++.|++++.|.+++.|++++.|++++.|
T Consensus         3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred             EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence            33444444444444444444444444444443

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.00  E-value=1.4e-05  Score=42.35  Aligned_cols=30  Identities=33%  Similarity=0.656  Sum_probs=11.3

Q ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCcEE
Q 030076           72 VLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL  103 (183)
Q Consensus        72 ~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i  103 (183)
                      .||++|.|++++.|  ++.|+++|.|++++.|
T Consensus         3 ~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I   32 (34)
T PF14602_consen    3 TIGDNCFIGANSTI--GITIGDGVIIGAGVVI   32 (34)
T ss_dssp             EE-TTEEE-TT-EE--TSEE-TTEEE-TTEEE
T ss_pred             EECCCEEECccccc--CCEEcCCCEECCCCEE
Confidence            34444444444444  2444444444444443

...

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.55  E-value=0.00035  Score=52.71  Aligned_cols=83  Identities=18%  Similarity=0.321  Sum_probs=54.9

Q ss_pred             CCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-eceEECCCCEECCCcEECCCCCceeeccCCcc
Q 030076           57 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM  135 (183)
Q Consensus        57 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~  135 (183)
                      +.+.|++++.+... ++++.+.+++++.|.+. ++..++.|...|.+ .+++.++++.||..+.|..             
T Consensus        21 gdViIG~nS~l~~~-V~g~~iivge~v~i~Gd-iva~diridmw~kv~gNV~ve~dayiGE~~sI~g-------------   85 (277)
T COG4801          21 GDVIIGKNSMLKYG-VVGEEIIVGERVRIYGD-IVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKG-------------   85 (277)
T ss_pred             ccEEEcccceeeee-eeeeeEEeccCcEEeee-EEecceeeeeeeEeeccEEEcCceEEeccceeee-------------
Confidence            34444444444322 45777778888888655 66677888777777 4566777777777777765             


Q ss_pred             ccCCceeceEECCCCEECCCcEEcCC
Q 030076          136 LKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       136 ~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                             ..++..+--+|+.+.|..|
T Consensus        86 -------kl~v~gdLdig~dV~Iegg  104 (277)
T COG4801          86 -------KLTVIGDLDIGADVIIEGG  104 (277)
T ss_pred             -------eEEEecccccccceEEecC
Confidence                   5666666777777777665

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=92.03  E-value=0.51  Score=39.42  Aligned_cols=44  Identities=11%  Similarity=0.133  Sum_probs=35.4

Q ss_pred             EECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076           78 CIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        78 ~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~  122 (183)
                      .+.+.+.|- ++++..++.+++++.|.+|.++.++.||.++.|..
T Consensus       275 ~~~~~~~Vi-nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisG  318 (414)
T PF07959_consen  275 DSEASSCVI-NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISG  318 (414)
T ss_pred             ccCCCeeEE-EeEecCCceECCCCEEEeeecCCCCEECCCCEEEC
Confidence            344555553 45888889999999999999999999999999985

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=91.51  E-value=0.44  Score=39.82  Aligned_cols=42  Identities=26%  Similarity=0.435  Sum_probs=31.8

Q ss_pred             CcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCC
Q 030076           70 KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSC  112 (183)
Q Consensus        70 ~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~  112 (183)
                      ++.+.+++.++++++|+ ++.++.++.||++|.|.++-+.+..
T Consensus       284 nSil~~~~~vg~~svIe-~s~l~~~~~IG~~cIisGv~~~~~~  325 (414)
T PF07959_consen  284 NSILEGGVSVGPGSVIE-HSHLGGPWSIGSNCIISGVDINSWS  325 (414)
T ss_pred             EeEecCCceECCCCEEE-eeecCCCCEECCCCEEECCcccccc
Confidence            66778888888888884 4488888888888888777554443

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins

Probab=87.64  E-value=1.1  Score=29.43  Aligned_cols=21  Identities=33%  Similarity=0.343  Sum_probs=8.7

Q ss_pred             CcEECCCcEEeceEECCCCEE
Q 030076           94 STNIGFNVALSNCIIGDSCII  114 (183)
Q Consensus        94 ~~~Ig~~~~i~~~~I~~~~~I  114 (183)
                      ...|+.++.+...+-.+++.+
T Consensus        36 ~v~i~~~~~v~G~i~~~~~~i   56 (101)
T PF04519_consen   36 KVKIGGNGEVKGDIKADDVII   56 (101)
T ss_pred             EEEEcCCCEEEEEEEEeEEEE
Confidence            344444444443333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
3eh0_A	341	Crystal Structure Of Lpxd From Escherichia Coli Len		1e-17
2iu8_A	374	Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Com		2e-16
3pmo_A	372	The Structure Of Lpxd From Pseudomonas Aeruginosa A		1e-14
4e75_A	357	Structure Of Lpxd From Acinetobacter Baumannii At 2		7e-12
3t57_A	305	Activity And Crystal Structure Of Arabidopsis Udp-N		1e-05

>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli Length = 341

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 8/136 (5%)
Query: 52  SACIDST------VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN 105
           SA ID+T      V I   A++ S   LG NV IG+G  VG    IG  + +  NV + +
Sbjct: 103 SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYH 162
Query: 106 CI-IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164
            I IG +C+I +G  +G DGFG+  ++ GN +K PQ+    IG+ VEIGA + IDRG+  
Sbjct: 163 EIQIGQNCLIQSGTVVGADGFGY-ANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALD 221
Query: 165 DTVIGDHSKIDNLVQV 180
           DT+IG+   IDN  Q+
Sbjct: 222 DTIIGNGVIIDNQCQI 237

>pdb|2IU8|A Chain A, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I) Length = 374

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
Query: 20  FGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCI 79
           F +   LF T  D      F   H    + H +A I+  V IE  A+V   A +G+   I
Sbjct: 109 FQKCLELFITPVD----SGFPGIHPTA-VIHPTAIIEDHVCIEPYAVVCQHAHVGSACHI 163
Query: 80  GSGTVVGPAVTIGQSTNIGFNVALSNCI-IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 138
           GSG+V+G   T+G+ + I   V +   + IG   II  G  IG  GFG+     G     
Sbjct: 164 GSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHL 223
Query: 139 PQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
             L    I + VEIGAN+ IDRG ++ +V+ + SKIDNLVQ+ 
Sbjct: 224 KHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIA 266

>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A Resolution Length = 372

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNC 106
           I    A +D +  +   A++ S A +GA V IG+  V+G    IG+   +   V L  + 
Sbjct: 127 IVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDV 186
Query: 107 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT 166
            IG    I +G  IG +GFGF  +E G   K  Q+    IG+ VEIGAN+ IDRG+  DT
Sbjct: 187 TIGARVSIQSGAVIGGEGFGF-ANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDT 245
Query: 167 VIGDHSKIDNLVQV 180
           +IG+  K+DN + +
Sbjct: 246 LIGNGVKLDNQIMI 259

>pdb|4E75|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a Resolution (p21 Form) Length = 357

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 52  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIG- 109
           S  I+ST  I   A++   A +G  V IG   VVG    I   T +  NV +  +C I  
Sbjct: 102 STGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDS 161
Query: 110 -----------DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158
                      D   IH+   IG +GFGF     G   +  QL +  IGN V IG+N  I
Sbjct: 162 YVTITGSSKLRDRVRIHSSTVIGGEGFGF-APYQGKWHRIAQLGSVLIGNDVRIGSNCSI 220
Query: 159 DRGSWRDTVIGDHSKIDNLVQVG 181
           DRG+  +T++ D   IDNLVQ+ 
Sbjct: 221 DRGALDNTILEDGVIIDNLVQIA 243

>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis Udp-N-Acetylglucosamine Acyltransferase Length = 305

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 62/143 (43%), Gaps = 30/143 (20%)
Query: 56  DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------SNCII 108
           DS VLI   A+VH  AV      IG G  VGP  TIG S  +G    L        N  +
Sbjct: 5   DSEVLIHPSAVVHPNAV------IGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTEL 58
Query: 109 GDSCIIHNGVCIGQDGFGF-------FVDEHGNMLKKPQLLNAR--------IGNHVEIG 153
           G+SC++  G  +G +  G+        +  H  +  K Q L  +        IGN+ EI 
Sbjct: 59  GESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIR 118
Query: 154 ANSCIDRGSWRD--TVIGDHSKI 174
               I R S     TVIGD++ I
Sbjct: 119 EFCSIHRSSKPSDKTVIGDNNLI 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	1e-49
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	2e-48
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	3e-48
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	8e-24
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	2e-10
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	2e-12
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	2e-12
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	6e-04
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	1e-11
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	9e-05
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	2e-11
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	2e-11
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	1e-04
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	6e-11
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	4e-10
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	1e-07
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	3e-07
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	7e-10
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	4e-09
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	6e-06
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	6e-09
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	1e-08
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	4e-08
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	2e-08
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	5e-08
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	4e-05
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	9e-07
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	1e-06
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	2e-06
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	4e-06
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	7e-06
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	3e-05
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	7e-05
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	7e-05
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	1e-04
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	5e-04
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	7e-04

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score =  163 bits (415), Expect = 1e-49
 Identities = 52/133 (39%), Positives = 72/133 (54%), Gaps = 1/133 (0%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 108
           H +A I+  V IE  A+V   A +G+   IGSG+V+G   T+G+ + I   V +     I
Sbjct: 134 HPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSI 193

Query: 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168
           G   II  G  IG  GFG+     G       L    I + VEIGAN+ IDRG ++ +V+
Sbjct: 194 GKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVV 253

Query: 169 GDHSKIDNLVQVG 181
            + SKIDNLVQ+ 
Sbjct: 254 REGSKIDNLVQIA 266

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score =  160 bits (406), Expect = 2e-48
 Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 108
              A +D +  +   A++ S A +GA V IG+  V+G    IG+   +   V L  +  I
Sbjct: 129 AADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTI 188

Query: 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168
           G    I +G  IG +GFGF  +E G   K  Q+    IG+ VEIGAN+ IDRG+  DT+I
Sbjct: 189 GARVSIQSGAVIGGEGFGF-ANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLI 247

Query: 169 GDHSKIDNLVQVG 181
           G+  K+DN + + 
Sbjct: 248 GNGVKLDNQIMIA 260

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score =  158 bits (403), Expect = 3e-48
 Identities = 52/133 (39%), Positives = 76/133 (57%), Gaps = 2/133 (1%)

Query: 50  HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCII 108
             +A + + V I   A++ S   LG NV IG+G  VG    IG  + +  NV +     I
Sbjct: 107 DATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQI 166

Query: 109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI 168
           G +C+I +G  +G DGFG+  ++ GN +K PQ+    IG+ VEIGA + IDRG+  DT+I
Sbjct: 167 GQNCLIQSGTVVGADGFGY-ANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTII 225

Query: 169 GDHSKIDNLVQVG 181
           G+   IDN  Q+ 
Sbjct: 226 GNGVIIDNQCQIA 238

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 93.7 bits (233), Expect = 8e-24
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 9/137 (6%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNV---ALS 104
           I  +   I   V IE    +    ++  NV I  G+ +G    +G+     +N       
Sbjct: 10  IIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKH 69

Query: 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164
             IIG++ +I     I  D       + G+  K     N +IGN+V+IG  S I      
Sbjct: 70  PLIIGENALIRTENVIYGDTIIGDNFQTGH--KVTIRENTKIGNNVKIGTLSDIQ----H 123

Query: 165 DTVIGDHSKIDNLVQVG 181
              IG++  I + V VG
Sbjct: 124 HVYIGNYVNIHSNVFVG 140

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 28/137 (20%), Positives = 42/137 (30%), Gaps = 15/137 (10%)

Query: 46  GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-S 104
             +      I    +I        K  +  N  IG+   +G    I     IG  V + S
Sbjct: 76  NALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHS 135

Query: 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR 164
           N  +G+  II + V +        V  +       +LL   I     I A S        
Sbjct: 136 NVFVGEKSIIKDFVWLF----PHVVLTNDPTPPSNELLGVTIELFAVIAARS-------- 183

Query: 165 DTVIGDHSKIDNLVQVG 181
             V+     I+    VG
Sbjct: 184 --VVLPGIHINEDALVG 198

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 26/140 (18%)

Query: 43  HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVA 102
           H+ G +  Q+    S   I   AI+   A L   V +G   +VG  VTIG  T IG +  
Sbjct: 7   HHMGTLEAQTQGPGSMSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSV 66

Query: 103 LS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLL-------NARIGNHVEIGA 154
           +  +  IG+   I +   +G                 PQ +          IG+   I  
Sbjct: 67  IEGHTTIGEDNRIGHYASVGGR---------------PQDMKYKDEPTRLVIGDRNTIRE 111

Query: 155 NSCIDRGSWRD---TVIGDH 171
            + I  G+ +D   T +GD 
Sbjct: 112 FTTIHTGTVQDAGVTTLGDD 131

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 62.2 bits (152), Expect = 2e-12
 Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 26/128 (20%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCI 113
           ID +  +   AIV   A +GAN  IG   +VGP V IG+ T +  +V ++ +  IG    
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61

Query: 114 IHNGVCIGQDGFGFFVDEHGNMLKKPQLL-------NARIGNHVEIGANSCIDRGSWRD- 165
           I+    IG+                 Q L          IG+   I  +  I RG+ +  
Sbjct: 62  IYQFASIGEV---------------NQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGG 106

Query: 166 --TVIGDH 171
             T +G  
Sbjct: 107 GLTKVGSD 114

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 13/86 (15%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI---------- 97
           I  + A I +   I    IV     +G    + S  VV     IG+   I          
Sbjct: 13  IVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVN 72

Query: 98  ---GFNVALSNCIIGDSCIIHNGVCI 120
               +    +   IGD   I   V I
Sbjct: 73  QDLKYAGEPTRVEIGDRNRIRESVTI 98

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIG-- 121
           AI+  KA L  +V +G  +++   V+I + T I  +V +     IG     H G  IG  
Sbjct: 7   AIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVM 66

Query: 122 -QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD--TVIGDH 171
            QD    F  +              IG+H      S I +G+  D  TVIG+ 
Sbjct: 67  PQD--LGFNQQLLTKTV--------IGDHNIFREYSNIHKGTKEDSPTVIGNK 109

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 40.6 bits (96), Expect = 9e-05
 Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 40/152 (26%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL---- 103
           I    A +  +V +   +I+     +     I     +     IG+         +    
Sbjct: 8   IIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMP 67

Query: 104 ----------SNCIIGDSCIIHNGVCI----GQDGFGFFVDEHGNMLKKPQLLNARIGNH 149
                     +  +IGD  I      I     +D                      IGN 
Sbjct: 68  QDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSP------------------TVIGNK 109

Query: 150 VEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
                NS +      D ++G+++ + +   + 
Sbjct: 110 NYFMGNSHVG----HDCILGNNNILTHGAVLA 137

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 17/123 (13%)

Query: 56  DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCII 114
           ++   I   A++   A LG +V I +   V     IG +  I     +  +  IGD   +
Sbjct: 2   NAMKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRV 61

Query: 115 HNGVCIG---QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD---TVI 168
            +   +G   QD    + +E  + +         IG +  I   + I+ G+ +    T I
Sbjct: 62  FSYAIVGDIPQD--ISYKEEQKSGVV--------IGKNATIREFATINSGTAKGDGFTRI 111

Query: 169 GDH 171
           GD+
Sbjct: 112 GDN 114

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 26/118 (22%)

Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQD 123
           AI+  KA +   V IG   V+G  V + +   +  NV L  +  +G +  I     +G  
Sbjct: 8   AIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQ 67

Query: 124 GFGFFVDEHGNMLKKPQLL-------NARIGNHVEIGANSCIDRGSWRD---TVIGDH 171
                          PQ L          IG    I     I+ G+      T+IGD 
Sbjct: 68  ---------------PQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDK 110

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 13/86 (15%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI---------- 97
           I    A I+  V I    ++     L   V + +   +     +G++T I          
Sbjct: 9   IISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQP 68

Query: 98  ---GFNVALSNCIIGDSCIIHNGVCI 120
               +    S  IIG+  +I     I
Sbjct: 69  QDLKYKGEYSELIIGEDNLIREFCMI 94

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 58.6 bits (142), Expect = 6e-11
 Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 24/139 (17%)

Query: 54  CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSC 112
             DS VLI   A+VH  AV+G  V +G    +G +V +G    +  +  +  N  +G+SC
Sbjct: 3   SRDSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESC 62

Query: 113 IIHNGVCIGQDGFGFFVDEHGNML-------KKPQLLNARIG--NHVEIGANSCI----- 158
           ++  G  +G +  G+      N++        K Q L  + G    + IG N+ I     
Sbjct: 63  VLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCS 122

Query: 159 ------DRGSWRDTVIGDH 171
                        TVIGD+
Sbjct: 123 IHRSSKPSDK---TVIGDN 138

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 36/127 (28%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           +D+ V  +    V     +   V I     +     I     IG         IG +  +
Sbjct: 223 LDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIG-----KGSEIGPNSYL 277

Query: 115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
                + +                      +IG  VE+           +++VI + SKI
Sbjct: 278 RPYTILVE--------------------KNKIGASVEV-----------KESVIMEGSKI 306

Query: 175 DNLVQVG 181
            +L  VG
Sbjct: 307 PHLSYVG 313

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 30/153 (19%), Positives = 45/153 (29%), Gaps = 45/153 (29%)

Query: 47  GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC 106
           G    +  I   V+IE  A + S   +   V IG G+ +GP   +   T +         
Sbjct: 233 GNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILV-----EKN 287

Query: 107 IIGDSC-----IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA-----NS 156
            IG S      +I  G  I           H + +      ++ I   V  GA     N 
Sbjct: 288 KIGASVEVKESVIMEGSKIP----------HLSYVG-----DSVIAEDVNFGAGTLIANL 332

Query: 157 CIDRGSWRD---------------TVIGDHSKI 174
             D    +                  IG H + 
Sbjct: 333 RFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRT 365

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 31/144 (21%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSC-- 112
           I+    I+ G  +     +G    IG  + + P   + +   IG +V +   +I +    
Sbjct: 247 IEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKI 306

Query: 113 ---------IIHNGVCIG---------QDGFGFFVDEHGNML----KKPQLLNARIGNHV 150
                    +I   V  G          D     V+  G  +    +K   L A IG HV
Sbjct: 307 PHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRK---LGAFIGGHV 363

Query: 151 EIGANSCIDRGSWRDTVIGDHSKI 174
             G N  I  G      IG +++I
Sbjct: 364 RTGINVTILPG----VKIGAYARI 383

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 55.2 bits (133), Expect = 7e-10
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 60  LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVC 119
           L  + A +   A++  +V IG   V+    TI     IG        +I  + ++     
Sbjct: 87  LKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIG-----EGSMIDMNAVLGGRAT 141

Query: 120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
           +G++           +++ P      + + V IGAN  +  G      +G  + +
Sbjct: 142 VGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEG----VTVGKGAVV 192

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 27/120 (22%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS--- 104
             H SA +  +V +  G  V +   + A+  IG   ++     +     +G    L    
Sbjct: 101 AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPAS 160

Query: 105 ----NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR 160
                  +G+   +  G  +                         IG    +GA   + R
Sbjct: 161 ALAGGVSVGERAFLGVGARVIP--------------------GVTIGADTIVGAGGVVVR 200

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 46  GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN-VALS 104
           G   +  + I    +I  GA+V     LGA   +G  + +   V++G+   +G     + 
Sbjct: 123 GVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIP 182

Query: 105 NCIIGDSCIIHNGVCIGQD 123
              IG   I+  G  + +D
Sbjct: 183 GVTIGADTIVGAGGVVVRD 201

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 17/98 (17%)

Query: 55  IDSTV----LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGD 110
           + S V    +I   A+  S  +L   V   S + +  AV +  S  IG +  LSN +I  
Sbjct: 323 VSSVVSGDCIISGAALNRS--LLFTGVRANSYSRLENAV-VLPSVKIGRHAQLSNVVIDH 379

Query: 111 SCIIHNGVCIG----QDGFGFFVDEHG------NMLKK 138
             +I  G+ +G     D   F   E G      +M+ K
Sbjct: 380 GVVIPEGLIVGEDPELDAKRFRRTESGICLITQSMIDK 417

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 59  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNG 117
             I   AIV   A +GA+  I     +     IG+  ++G NV + +   IG+   I N 
Sbjct: 4   ATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNN 63

Query: 118 VCIGQD-----------GFGFFVDEHGNMLK--KPQLLNARIGNHVEIGANSCIDRGSWR 164
           V +  +              F    +       K +  +  +     +GAN  +  G   
Sbjct: 64  VSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCG--- 120

Query: 165 DTVIGDHSKI 174
              IG ++ +
Sbjct: 121 -ATIGRYAFV 129

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 50.0 bits (119), Expect = 4e-08
 Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 23/106 (21%)

Query: 74  GANVCIGSGTVVGPAVTIGQSTNIG-FNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEH 132
           G    I    +V     IG  + I  +        IG+ C +   V +G           
Sbjct: 1   GHMATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGN---------- 50

Query: 133 GNMLKKPQLLNARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDN 176
                       RIGN V+I  N  +    +   D   G      N
Sbjct: 51  ----------RVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTN 86

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 15/127 (11%)

Query: 59  VLIEVGAIVH--SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC----IIGDSC 112
           VLI   A ++      +G NV I    ++   VTIG  ++I    AL        + D  
Sbjct: 39  VLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFA 98

Query: 113 IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNAR-----IGNHVEIGANSCIDRGSWRDTV 167
            I +   +      F  +         Q  N +     +  HV IGA+S I        V
Sbjct: 99  NISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPN----VV 154

Query: 168 IGDHSKI 174
           IG+   +
Sbjct: 155 IGEGVAV 161

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 41/145 (28%)

Query: 36  RQQFQKWHNGGGIF----HQSACIDSTVLIE--VGAIVHSKAVLGANVCIGSGTVVGPAV 89
           ++ +QK    G       H+SA I  + ++E   G ++    V+ A   I  G ++  + 
Sbjct: 61  KKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSS 120

Query: 90  TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNH 149
            I              C+IG+   +  G                         N +IG +
Sbjct: 121 VIE-----------HECVIGEFSHVSVGAKCAG--------------------NVKIGKN 149

Query: 150 VEIGANSCIDRGSWRDTVIGDHSKI 174
             +G NSC+         + D S +
Sbjct: 150 CFLGINSCVLPN----LSLADDSIL 170

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 53  ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI-IGDS 111
           A I+  V++   +++  + V+G    +  G      V IG++  +G N  +   + + D 
Sbjct: 108 AKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADD 167

Query: 112 CIIHNGVCIGQD 123
            I+  G  + ++
Sbjct: 168 SILGGGATLVKN 179

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 47.1 bits (113), Expect = 9e-07
 Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 51/156 (32%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           ID  V I     + +  +L     IG+ TV+     +  ST IG    ++N +I +   +
Sbjct: 271 IDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDST-IGAGAVITNSMI-EESSV 328

Query: 115 HNGVCIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGS--------- 162
            +GV +G      +   H    + L         IGN VE+   S I   +         
Sbjct: 329 ADGVTVGP-----YA--HIRPNSSLGA----QVHIGNFVEV-KGSSIGENTKAGHLTYIG 376

Query: 163 ------------------------WRDTVIGDHSKI 174
                                   ++ TVIGD+  +
Sbjct: 377 NCEVGSNVNFGAGTITVNYDGKNKYK-TVIGDNVFV 411

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 32/156 (20%), Positives = 48/156 (30%), Gaps = 51/156 (32%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           ID  V I    ++H    L     IG   VVGP  T+     +G   ++       S  I
Sbjct: 280 IDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVA-VGDGASVVRTHG-SSSSI 337

Query: 115 HNGVCIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGS--------- 162
            +G  +G      F   +   G  L      + ++G  VE+  NS I  G+         
Sbjct: 338 GDGAAVGP-----FT--YLRPGTALGA----DGKLGAFVEV-KNSTIGTGTKVPHLTYVG 385

Query: 163 ------------------------WRDTVIGDHSKI 174
                                    R T +G H + 
Sbjct: 386 DADIGEYSNIGASSVFVNYDGTSKRR-TTVGSHVRT 420

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 22/107 (20%)

Query: 59  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGV 118
           V I+V  I+     LG  V IG+G V+   V IG    I     L + I+G+   I    
Sbjct: 272 VEIDVNVIIEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAI---- 326

Query: 119 CIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGS 162
                  G F       G  L         +GN VEI   S + +GS
Sbjct: 327 -------GPFS--RLRPGAELAA----ETHVGNFVEI-KKSTVGKGS 359

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 22/107 (20%)

Query: 59  VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGV 118
           + I+   I+    +LG  V IG+G V+     IG  + I     L +  +  +C +    
Sbjct: 275 ITIDTNVIIEGHVILGDRVRIGTGCVL-KNCVIGDDSEISPYTVLEDARLDANCTV---- 329

Query: 119 CIGQDGFGFFVDEH---GNMLKKPQLLNARIGNHVEIGANSCIDRGS 162
                  G F       G  L +     A +GN VEI   + + +GS
Sbjct: 330 -------GPFA--RLRPGAELAE----GAHVGNFVEI-KKARLGKGS 362

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 10/133 (7%)

Query: 46  GGIFHQSACIDSTVLIEVGAIVHSK--AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL 103
            G+  +   +      EV A  H    A   +   +    V+     IG++  +     L
Sbjct: 247 TGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL 306

Query: 104 SNCIIGD-SCIIHNGVCIGQDGFGFFVD-EHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161
            N  +G  S    N   I            HG       ++NA +G+ +  G NS +   
Sbjct: 307 DNAWMGKGSNAQENCY-IINSRLERNCVTAHGGK-----IINAHLGDMIFTGFNSFLQGS 360

Query: 162 SWRDTVIGDHSKI 174
                 IGD   +
Sbjct: 361 ESSPLKIGDGCVV 373

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 17/96 (17%)

Query: 70  KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV 129
            A +G          +  +  + ++        + N  +GD               GF  
Sbjct: 308 NAWMGKGSNAQENCYIINS-RLERNCVTAHGGKIINAHLGDMIFT-----------GF-- 353

Query: 130 DEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD 165
               + L+  +    +IG+   +  ++ ID     +
Sbjct: 354 ---NSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLE 386

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} Length = 310

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 32/112 (28%)

Query: 68  HSKAVLGANVCI--GSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGF 125
           H  A +G +  I  G+G V      IG +            IIG++  ++ GV +G    
Sbjct: 194 HPGAQIGHHFTIDHGTGVV------IGAT-----------SIIGNNVKLYQGVTLG--AK 234

Query: 126 GFFVDEHGNMLKKPQLLNAR---IGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
            F +D +GN +K       R   + + V + +N+ I  G      IG  + +
Sbjct: 235 SFPLDNNGNPIKG----IPRHPILEDDVIVYSNATI-LG---RVTIGKGATV 278

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A Length = 213

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 32/133 (24%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTV----VGPAVTIGQSTNI---------GFNV 101
           I  T  +   + +     +   V I  GT      G    IG  TNI             
Sbjct: 42  IAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGR 101

Query: 102 ALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161
            + +     S  I + V I           H  ++  P    A IG+   IG  S +   
Sbjct: 102 VIGDDGQEYSVWIGDNVSIT----------HMALIHGP----AYIGDGCFIGFRSTV--- 144

Query: 162 SWRDTVIGDHSKI 174
              +  +G    +
Sbjct: 145 --FNARVGAGCVV 155

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A Length = 313

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 33/112 (29%)

Query: 68  HSKAVLGANVCI--GSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGF 125
           H  A +  +  I  G G V      IG++            IIG+ C I+  V +G   F
Sbjct: 167 HPGASIKGHFFIDHGVGVV------IGET-----------AIIGEWCRIYQSVTLGAMHF 209

Query: 126 GFFVDEHGNMLKKPQLLNAR---IGNHVEIGANSCIDRGSWRDTVIGDHSKI 174
               +E G + +       R   +G++V IG  + +  G   + ++G H +I
Sbjct: 210 Q---EEGGVIKRG----TKRHPTVGDYVTIGTGAKV-LG---NIIVGSHVRI 250

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 20/151 (13%), Positives = 42/151 (27%), Gaps = 16/151 (10%)

Query: 45  GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS 104
                   A I   V I+  ++    A+ G    +    ++       +   I       
Sbjct: 99  DRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIY--D 156

Query: 105 NCIIGDSCIIHNGVCIGQDGFGFFVDEH-----------GNMLKKPQLL-NARIGNHVEI 152
              +  S I+H     G         EH           G+      +   A++  H  +
Sbjct: 157 RATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARV 216

Query: 153 GANSCIDRGSW--RDTVIGDHSKIDNLVQVG 181
            A +  D        + + +H+ I+    + 
Sbjct: 217 IAGTEEDAIPTLRYSSQVAEHALIEGNCVLK 247

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 34/116 (29%)

Query: 49  FHQSACIDSTV----LIEVGAIVHSKAVLGANVCIGSGTVV-------GPAVTIGQSTNI 97
              +   DS +    +I+   I HS  V+G   CI  G ++                  +
Sbjct: 323 MLDADVTDSVIGEGCVIKNCKIHHS--VVGLRSCISEGAIIEDSLLMGADYYETDADRKL 380

Query: 98  GFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG 153
                     IG +C I     I        +D+           NARIG++V+I 
Sbjct: 381 LAAKGSVPIGIGKNCHIKR--AI--------IDK-----------NARIGDNVKII 415

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.89
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.88
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.87
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.86
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.85
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.82
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.82
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.81
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.81
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.8
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.8
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.8
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.8
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.8
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.79
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.79
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.79
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.78
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.78
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.78
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.78
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.78
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.77
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.77
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.77
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.77
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.77
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.77
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.76
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.76
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.76
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.76
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.76
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.76
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.76
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.75
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.75
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.75
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.75
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.75
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.75
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.74
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.74
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.74
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.74
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.73
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.73
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.72
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.72
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.72
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.72
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.71
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.71
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.71
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.71
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.7
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.7
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.7
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.7
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.69
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.69
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.69
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.69
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.69
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.68
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.67
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.67
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.65
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.65
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.63
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.62
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.62
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.61
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.6
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.6
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.6
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.59
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.59
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.59
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.58
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.58
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.58
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.57
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.56
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.56
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.56
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.55
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.54
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.54
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.54
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.53
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.53
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.52
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.52
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.52
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.51
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.5
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.49
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.48
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.47
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.46
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.46
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.45
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.45
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.44
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.43
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.4
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.38
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.38
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.35
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.32
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.31
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.31
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.26
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	99.17
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.15
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.14
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	99.03

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.89  E-value=1.4e-21  Score=157.16  Aligned_cols=136  Identities=35%  Similarity=0.501  Sum_probs=98.2

Q ss_pred             CCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-eceEECCCCEECCCcEECCC
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD  123 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~  123 (183)
                      ....+++++.|++++.|++++.|++++.||++|.|+++++|+++++||++|.|++++.| .+++|+++|.|++++.|+.+
T Consensus       107 p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~Ig~d  186 (357)
T 4e79_A          107 STARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSKLRDRVRIHSSTVIGGE  186 (357)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEESCC
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEecccEEEeEeeccCCeEECcc
Confidence            34444445555555555555555556666666666666666666777777777777777 67889999999999999998


Q ss_pred             CCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +|+|.. .++...+..+.+.++||++|+|+++++|.++..++++||+++.|+++++|+
T Consensus       187 gfg~~~-~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~I~~~v~I~  243 (357)
T 4e79_A          187 GFGFAP-YQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILEDGVIIDNLVQIA  243 (357)
T ss_dssp             CCCEEE-ETTEEEECCCCCCEEECTTCEECTTCEECCCSSSCEEECTTCEECTTCEEC
T ss_pred             cCcccc-cCCceeeccccCcEEEcCCcEEccccEEeccccCCccccCCcccCCCcccC
Confidence            888876 345455566777899999999999999987766667777776666666654

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.88  E-value=6.1e-21  Score=154.09  Aligned_cols=136  Identities=37%  Similarity=0.572  Sum_probs=90.2

Q ss_pred             CCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-eceEECCCCEECCCcEECCC
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD  123 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~  123 (183)
                      ....+.+.+.|++++.|++++.|++++.||+++.|+++++|++++.||++|.|++++.| .++.|+++|.|++++.|+.+
T Consensus       124 p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~~~~IG~~v~I~~g~~Ig~d  203 (372)
T 3pmo_A          124 PTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVIGGE  203 (372)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEEEEC
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcccCCCcEEEeeeEECceeeccCCcEEecC
Confidence            33344444444444455555555555555555555555555555566666666666666 35778888888888988888


Q ss_pred             CCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .|+|.. .++...+..+.+.++||++++||+++++..+...+++||+++.|+++++|+
T Consensus       204 gfg~~~-~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~  260 (372)
T 3pmo_A          204 GFGFAN-EKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIA  260 (372)
T ss_dssp             CCCEEE-ETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEEC
T ss_pred             cccccc-cCCcceeccccCCeEECCCCEECCCcEEccCcccceEECCCCEECCCCEEC
Confidence            888876 344445566677899999999999998887666667777777777666664

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.87  E-value=8e-21  Score=151.91  Aligned_cols=138  Identities=38%  Similarity=0.645  Sum_probs=99.4

Q ss_pred             cCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-eceEECCCCEECCCcEEC
Q 030076           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~  121 (183)
                      +.....+.+++.|++++.|++++.|++++.||++|.|++++.|+.++.||++|.|++++.| .++.|+++|.|++++.|+
T Consensus       100 i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I~  179 (341)
T 3eh0_A          100 IAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVG  179 (341)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTCEEE
T ss_pred             cCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECCCCEECCccEEcCCcEEC
Confidence            3445556666666666666666666666777777777777777777777777778788877 678999999999999999


Q ss_pred             CCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .++|+|... .+...+..+.+.+.||++++|++++++..+..++++||+++.|+++++++
T Consensus       180 ~~~fg~~~~-~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~  238 (341)
T 3eh0_A          180 ADGFGYAND-RGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIA  238 (341)
T ss_dssp             ECCSCEEEE-TTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEEC
T ss_pred             Ccccccccc-CCccccccccCcEEECCCcEECCccEeeccccCceEeccceEECCCCEEe
Confidence            888887655 33344555667888999999998888876655556666666666666553

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.86  E-value=2.3e-20  Score=137.75  Aligned_cols=126  Identities=20%  Similarity=0.283  Sum_probs=81.5

Q ss_pred             cEEccceEECCCcEECCCcEE------ccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-eceEECCCCEECCCcE
Q 030076           47 GIFHQSACIDSTVLIEVGAIV------HSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVC  119 (183)
Q Consensus        47 ~~i~~~~~i~~~~~i~~~~~i------~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~  119 (183)
                      ..|+|.++|++++.|++++.|      .+++.||++|.|++++.|+++++||++|.|++++.| .++.|++++.|++++.
T Consensus         4 ~~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~   83 (192)
T 3mqg_A            4 ATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMV   83 (192)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCB
T ss_pred             CEECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceE
Confidence            345555555555555555555      455555555555555555555666666666666666 4566666666666666


Q ss_pred             ECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       120 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +.+..+.     ...........+++||+++|||++++|.+|    ++||++++|+++++|.
T Consensus        84 ~~~~~~~-----~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g----~~Ig~~~~IgagsvV~  136 (192)
T 3mqg_A           84 FTNVYNP-----RAAIERKSEYRDTIVRQGATLGANCTVVCG----ATIGRYAFVGAGAVVN  136 (192)
T ss_dssp             CCSCSSC-----BTTBCCGGGCCCEEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             EecccCC-----ccccccccccCCcEECCCcEECCCCEECCC----CEECCCCEEcCCCEEC
Confidence            6542111     111122233458999999999999999998    9999999999999985

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.85  E-value=5.5e-20  Score=148.77  Aligned_cols=119  Identities=36%  Similarity=0.558  Sum_probs=88.1

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-eceEECCCCEECCCcEECC
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~  122 (183)
                      .....+.+++.|++++.|++++.|++++.||++|.|++++.|+++++||++|.|++++.| .+++|+++|.|++++.|+.
T Consensus       128 ~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~  207 (374)
T 2iu8_A          128 HPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGS  207 (374)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEEE
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEECc
Confidence            344555556666666666666666666666777777777777677777888888878877 5788999999999999998


Q ss_pred             CCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076          123 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (183)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~  162 (183)
                      +.|+|....++...+..+.+.++||++|+||++++|..+.
T Consensus       208 ~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~  247 (374)
T 2iu8_A          208 CGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGR  247 (374)
T ss_dssp             ECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECS
T ss_pred             CCcccccccCCceeEeeeeccEEECCCCEECCCcEEccCc
Confidence            8888876655444455566789999999999999887553

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.82  E-value=9.3e-20  Score=148.26  Aligned_cols=163  Identities=20%  Similarity=0.215  Sum_probs=91.3

Q ss_pred             hhhHHHhhhhhhcccchhhhhhh---hhcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEEC
Q 030076           16 YKQDFGRFCNLFSTKSDIESRQQ---FQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIG   92 (183)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig   92 (183)
                      +|.++.+++++..++..++....   ....+..+..+.+++.+++++.|++++.|.+++.||++|.|++++.|+++++||
T Consensus       205 ~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig  284 (401)
T 2ggo_A          205 YWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILV  284 (401)
T ss_dssp             CEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEEC
T ss_pred             eEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEEC
Confidence            56666666666555444433211   111222333344444444444444444444444455555555555554444445


Q ss_pred             CCcEECCCc-----------------EEeceEECCCCEECCCcEECCCCCc----eeeccCCccccCCceeceEECCCCE
Q 030076           93 QSTNIGFNV-----------------ALSNCIIGDSCIIHNGVCIGQDGFG----FFVDEHGNMLKKPQLLNARIGNHVE  151 (183)
Q Consensus        93 ~~~~Ig~~~-----------------~i~~~~I~~~~~Ig~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~Ig~~~~  151 (183)
                      ++|.|+++|                 .|.+++|+++|+|++++.+.+..+.    .....+..........+++||++||
T Consensus       285 ~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~  364 (401)
T 2ggo_A          285 EKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVR  364 (401)
T ss_dssp             SSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCE
T ss_pred             CCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeE
Confidence            544444444                 4445566777777777777632211    1111111111122235899999999


Q ss_pred             ECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          152 IGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       152 Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      ||++++|.+|    ++||++++|+++++|.+
T Consensus       365 Ig~~~~I~~g----v~Ig~~~vi~~gsvv~~  391 (401)
T 2ggo_A          365 TGINVTILPG----VKIGAYARIYPGAVVNR  391 (401)
T ss_dssp             ECTTCEECTT----CEECTTCEECTTCEECS
T ss_pred             ECCCcEEcCC----cEECCCcEECCCCeEcc
Confidence            9999999999    99999999999999853

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.82  E-value=2e-19  Score=132.80  Aligned_cols=106  Identities=25%  Similarity=0.337  Sum_probs=72.4

Q ss_pred             cceEECCCcEECCCcEEccCcEECCCcEECCCCEECC---CCEECCCcEECCCcEEe------ceEECCCCEECCCcEEC
Q 030076           51 QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVALS------NCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        51 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i~------~~~I~~~~~Ig~~~~i~  121 (183)
                      +.+.|++++.|.+++.|.+++.||+++.|++++.|.+   .++||++|.|+++|.|.      +++|+++|.|++++.+.
T Consensus        32 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~  111 (191)
T 3ixc_A           32 VSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILH  111 (191)
T ss_dssp             BCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEEC
T ss_pred             CCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEE
Confidence            3345555555555666666666777777777777653   33777777777777775      67777777777777776


Q ss_pred             CCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                           +++||++|+|+++++|.++    ++||++++|+++++|.
T Consensus       112 ---------------------~~~Ig~~~~Ig~~~~I~~~----~~Ig~~~~Ig~gsvV~  146 (191)
T 3ixc_A          112 ---------------------ACTLGNNAFVGMGSIVMDR----AVMEEGSMLAAGSLLT  146 (191)
T ss_dssp             ---------------------SCEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             ---------------------CCEECCCCEECCCCEEeCC----eEECCCCEECCCCEEC
Confidence                                 6777777777777777766    6777777777766664

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.81  E-value=3e-19  Score=133.04  Aligned_cols=125  Identities=24%  Similarity=0.202  Sum_probs=96.9

Q ss_pred             eEECCCcEECCCcEEcc--CcEECCCcEECCCCEECCCCEECCCcEECCCcEE----eceEECCCCEECCCcEECCCCCc
Q 030076           53 ACIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL----SNCIIGDSCIIHNGVCIGQDGFG  126 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i~~--~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i----~~~~I~~~~~Ig~~~~i~~~~~~  126 (183)
                      +.+++++.|++++.|.+  ++.||++|.|++++.|.++++||++|.|++++.|    .+++|+++|.|++++.|.+..++
T Consensus        33 ~~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~  112 (205)
T 3vbi_A           33 LSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDD  112 (205)
T ss_dssp             SEECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECC
T ss_pred             eEECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCC
Confidence            44566666666666666  7899999999999999889999999999999999    34999999999999999653221


Q ss_pred             eeec--cCCc---cccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          127 FFVD--EHGN---MLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       127 ~~~~--~~~~---~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +...  ....   ........+++||++|+||++++|.+|    ++||++|+|+++++|.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g----v~Ig~~~~Ig~gsvV~  168 (205)
T 3vbi_A          113 FSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPN----VVIGEGVAVGAMSMVK  168 (205)
T ss_dssp             CSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSS----CEECTTCEECTTCEEC
T ss_pred             cccccccCcccccccceeccCCEEECCCCEECCCCEEcCC----CEECCCCEEcCCCEEC
Confidence            1100  0000   011223458999999999999999998    9999999999999985

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.81  E-value=1.2e-18  Score=128.86  Aligned_cols=107  Identities=15%  Similarity=0.259  Sum_probs=73.1

Q ss_pred             ccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC---CCCEECCCcEECCCcEEe-----------------ceEEC
Q 030076           50 HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVALS-----------------NCIIG  109 (183)
Q Consensus        50 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~---~~~~Ig~~~~Ig~~~~i~-----------------~~~I~  109 (183)
                      .+++.|++++.|.+++.|.+++.||++|.|++++.|.   +.++||++|.|++++.|.                 .++|+
T Consensus        10 ~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig   89 (194)
T 3tv0_A           10 QKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIG   89 (194)
T ss_dssp             --CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEEC
T ss_pred             CCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEEC
Confidence            3445566666666666666666777777777777663   345777777777777773                 35677


Q ss_pred             CCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       110 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++.|+.++.+.                     .+.||++++|+++++|.++    ++||++|+|+++++|.
T Consensus        90 ~~~~i~~~~~i~---------------------~~~Ig~~~~Ig~~~~I~~g----v~IG~~~~IgagsvV~  136 (194)
T 3tv0_A           90 TNNVFEVGCYSQ---------------------AMKMGDNNVIESKAYVGRN----VILTSGCIIGACCNLN  136 (194)
T ss_dssp             SSCEECTTCEEC---------------------CSEECSSCEECTTCEECTT----EEECSSCEECTTCEEC
T ss_pred             CcceEecceeEe---------------------eeeecccceecceeeECCe----EEECCCCEECCCCEEC
Confidence            777777777765                     6777777777777777776    7777777777777774

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.80  E-value=3e-18  Score=132.60  Aligned_cols=134  Identities=22%  Similarity=0.298  Sum_probs=81.7

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE--------------eceEEC
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL--------------SNCIIG  109 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i--------------~~~~I~  109 (183)
                      .+...+++++.|++++.|++++.|++++.||+++.|++++.|.++++||++|.|++++.|              .+++||
T Consensus         8 ~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG   87 (266)
T 3r0s_A            8 HPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIG   87 (266)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEEC
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEEC
Confidence            344455555566666666666666666666666666666666666677777777777766              356666


Q ss_pred             CCCEECCCcEECCCCC---ceee------------------ccCCccc-cCCce-eceEECCCCEECCCcEEcCCCCCCe
Q 030076          110 DSCIIHNGVCIGQDGF---GFFV------------------DEHGNML-KKPQL-LNARIGNHVEIGANSCIDRGSWRDT  166 (183)
Q Consensus       110 ~~~~Ig~~~~i~~~~~---~~~~------------------~~~~~~~-~~~~~-~~~~Ig~~~~Ig~~~~v~~g~~~~~  166 (183)
                      ++|.|++++.|.....   +.+.                  ..+.... ..... +++.||+++|||++++|.++    +
T Consensus        88 ~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~----v  163 (266)
T 3r0s_A           88 KNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQF----V  163 (266)
T ss_dssp             TTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT----C
T ss_pred             CCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCC----c
Confidence            7666666666654211   0011                  1111111 11122 25788888888888888877    8


Q ss_pred             EECCCCEECCCCeEe
Q 030076          167 VIGDHSKIDNLVQVG  181 (183)
Q Consensus       167 ~Ig~~~~I~~~~~v~  181 (183)
                      +||++++|+++++|.
T Consensus       164 ~Ig~~a~Vg~~s~V~  178 (266)
T 3r0s_A          164 KVGEGCMIAGASALS  178 (266)
T ss_dssp             EECTTCEECSSCBBC
T ss_pred             EECCCCEEccCCeEe
Confidence            888888888888774

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.80  E-value=1.5e-18  Score=135.48  Aligned_cols=136  Identities=26%  Similarity=0.312  Sum_probs=86.5

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-------------eceEE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------------SNCII  108 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-------------~~~~I  108 (183)
                      .+.....|.+++.|++++.|++++.|++++.||+++.|++++.|.++++||++|.|++++.|             .+++|
T Consensus        24 ~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~I  103 (283)
T 4eqy_A           24 RIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVI  103 (283)
T ss_dssp             CBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEE
T ss_pred             ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEE
Confidence            34555556666666666666666666666666666666666666666777777777777777             25667


Q ss_pred             CCCCEECCCcEECCCCC---cee------------------eccCCcccc-CCce-eceEECCCCEECCCcEEcCCCCCC
Q 030076          109 GDSCIIHNGVCIGQDGF---GFF------------------VDEHGNMLK-KPQL-LNARIGNHVEIGANSCIDRGSWRD  165 (183)
Q Consensus       109 ~~~~~Ig~~~~i~~~~~---~~~------------------~~~~~~~~~-~~~~-~~~~Ig~~~~Ig~~~~v~~g~~~~  165 (183)
                      ++++.|++++.|.....   +..                  ...+..... .... .++.||+++|||++++|.++    
T Consensus       104 G~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~----  179 (283)
T 4eqy_A          104 GDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQY----  179 (283)
T ss_dssp             CSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT----
T ss_pred             CCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCC----
Confidence            77777777766654210   001                  111111111 1222 25888888888888888877    


Q ss_pred             eEECCCCEECCCCeEe
Q 030076          166 TVIGDHSKIDNLVQVG  181 (183)
Q Consensus       166 ~~Ig~~~~I~~~~~v~  181 (183)
                      ++||++++|+++++|.
T Consensus       180 v~Ig~~~vvg~~s~V~  195 (283)
T 4eqy_A          180 VRIGAHSMLGGASALV  195 (283)
T ss_dssp             CEECTTCEECTTCEEC
T ss_pred             eEECCCcEECCCCeEe
Confidence            8889999998888874

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.80  E-value=6.6e-19  Score=134.31  Aligned_cols=110  Identities=23%  Similarity=0.349  Sum_probs=82.2

Q ss_pred             CCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076           56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGN  134 (183)
Q Consensus        56 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~  134 (183)
                      ++++.|.+++.|.+++.||++|.|++++.|..+++||++|.|+.++.|. +++|+++|+|++++.+.+...         
T Consensus        89 ~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~---------  159 (240)
T 3r8y_A           89 GIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIE---------  159 (240)
T ss_dssp             TCSSEECTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCS---------
T ss_pred             CCCCEECCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcc---------
Confidence            4455666666666677777777777777777777777777777777774 688888888888888875210         


Q ss_pred             cccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          135 MLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       135 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                         .....+++|+++|+||++++|.++    ++||++++|+++++|.
T Consensus       160 ---~~~~~~~~Ig~~~~IG~~~~I~~~----~~Ig~~~~I~~gsvV~  199 (240)
T 3r8y_A          160 ---PPSAKPVIVEDDVVIGANVVVLEG----VTVGKGAVVAAGAVVT  199 (240)
T ss_dssp             ---CTTSCCCEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             ---CCCCCCcEECCCCEECCCCEECCC----cEECCCCEECCCCEEC
Confidence               111236899999999999999887    8999999999998884

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.80  E-value=6.9e-19  Score=127.85  Aligned_cols=102  Identities=24%  Similarity=0.259  Sum_probs=52.4

Q ss_pred             EECCCcEECCCcEEccCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEe-----ceEECCCCEECCCcEECCCCC
Q 030076           54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALS-----NCIIGDSCIIHNGVCIGQDGF  125 (183)
Q Consensus        54 ~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~-----~~~I~~~~~Ig~~~~i~~~~~  125 (183)
                      .|++++.|++++.|.+++.||+++.|++++.|.+.   ++||++|.|+++|.|.     +++|++++.|++++.+.    
T Consensus        14 ~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~----   89 (173)
T 1xhd_A           14 KIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILH----   89 (173)
T ss_dssp             EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEE----
T ss_pred             EECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEe----
Confidence            34444444444444444555555555555555432   4555555555555554     45555555555555554    


Q ss_pred             ceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          126 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                                       +++||++++|++++++.++    ++||+++.|+++++|
T Consensus        90 -----------------~~~Ig~~~~Ig~~~~i~~~----~~Ig~~~~Ig~~s~V  123 (173)
T 1xhd_A           90 -----------------SCHIKKDALIGMGSIILDG----AEIGEGAFIGAGSLV  123 (173)
T ss_dssp             -----------------SCEECTTCEECTTCEECTT----CEECTTCEECTTCEE
T ss_pred             -----------------CCEECCCCEEcCCCEEcCC----CEECCCCEECCCCEE
Confidence                             4555555555555555544    555555555555544

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.80  E-value=5.1e-18  Score=131.19  Aligned_cols=134  Identities=25%  Similarity=0.266  Sum_probs=78.0

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-------------eceEECC
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------------SNCIIGD  110 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-------------~~~~I~~  110 (183)
                      .+...+.+++.|++++.|++++.|++++.||+++.|++++.|.++++||++|.|++++.|             .+++|++
T Consensus        11 ~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~   90 (265)
T 4e6u_A           11 HSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGN   90 (265)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECS
T ss_pred             CCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECC
Confidence            334444444455555555555555555555555555555555555666666666666666             3456666


Q ss_pred             CCEECCCcEECCCCC---c------------------eeeccCCccc-cCCce-eceEECCCCEECCCcEEcCCCCCCeE
Q 030076          111 SCIIHNGVCIGQDGF---G------------------FFVDEHGNML-KKPQL-LNARIGNHVEIGANSCIDRGSWRDTV  167 (183)
Q Consensus       111 ~~~Ig~~~~i~~~~~---~------------------~~~~~~~~~~-~~~~~-~~~~Ig~~~~Ig~~~~v~~g~~~~~~  167 (183)
                      ++.|++++.|.....   +                  .....+.... ..... .++.||+++|||++++|.++    ++
T Consensus        91 ~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~----v~  166 (265)
T 4e6u_A           91 NNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQF----CK  166 (265)
T ss_dssp             SCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTT----CE
T ss_pred             CeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCC----cE
Confidence            666666666653210   0                  0111111111 11222 25888888888888888888    89


Q ss_pred             ECCCCEECCCCeEe
Q 030076          168 IGDHSKIDNLVQVG  181 (183)
Q Consensus       168 Ig~~~~I~~~~~v~  181 (183)
                      ||++++|+++++|.
T Consensus       167 Ig~~~~i~~~svV~  180 (265)
T 4e6u_A          167 IDSYSMIGGASLIL  180 (265)
T ss_dssp             ECTTCEECTTCEEC
T ss_pred             ECCCCEEcCCCEEc
Confidence            99999999998874

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.79  E-value=1.1e-18  Score=128.21  Aligned_cols=99  Identities=29%  Similarity=0.375  Sum_probs=46.7

Q ss_pred             CCcEECCCcEEccCcEECCCcEECCCCEECCCC---EECCCcEECCCcEE------------eceEECCCCEECCCcEEC
Q 030076           57 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV---TIGQSTNIGFNVAL------------SNCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        57 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~---~Ig~~~~Ig~~~~i------------~~~~I~~~~~Ig~~~~i~  121 (183)
                      +++.|++++.|.+++.||+++.|++++.|.+++   +||++|.|++++.|            .+++|+++|+|++++.|.
T Consensus        20 ~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~   99 (187)
T 3r3r_A           20 QRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLH   99 (187)
T ss_dssp             TTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEE
T ss_pred             CCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEe
Confidence            333333333333444444444444444444322   45555555555555            344555555555555554


Q ss_pred             CCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                                           ++.||++++|+++++|.++    ++||++++|+++++|
T Consensus       100 ---------------------~~~Ig~~~~Ig~~~~I~~~----~~Ig~~~~Ig~~s~V  133 (187)
T 3r3r_A          100 ---------------------GCTIGNRVLVGMGSIVLDG----AIIEDDVMIGAGSLV  133 (187)
T ss_dssp             ---------------------SCEECSSEEECTTCEECTT----CEECSSEEECTTCEE
T ss_pred             ---------------------CcEECCCCEECCCCEECCC----CEECCCCEECCCCEE
Confidence                                 4555555555555555444    444444444444444

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.79  E-value=3.5e-18  Score=132.51  Aligned_cols=133  Identities=21%  Similarity=0.174  Sum_probs=78.8

Q ss_pred             CCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-------------eceEECCC
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-------------SNCIIGDS  111 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-------------~~~~I~~~  111 (183)
                      +...+++++.|++++.|++++.|++++.||+++.|++++.|.++++||++|.|+++|.|             .+++|+++
T Consensus         6 p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~   85 (270)
T 1j2z_A            6 KTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGED   85 (270)
T ss_dssp             TTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSS
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCC
Confidence            34445555555666666666666666666666666666666656666666666666666             34556666


Q ss_pred             CEECCCcEECCCCC---ceeeccC------------------Ccccc-CCce-eceEECCCCEECCCcEEcCCCCCCeEE
Q 030076          112 CIIHNGVCIGQDGF---GFFVDEH------------------GNMLK-KPQL-LNARIGNHVEIGANSCIDRGSWRDTVI  168 (183)
Q Consensus       112 ~~Ig~~~~i~~~~~---~~~~~~~------------------~~~~~-~~~~-~~~~Ig~~~~Ig~~~~v~~g~~~~~~I  168 (183)
                      +.|++++.|.....   +.+...+                  ..... .... +++.||++++||++++|.++    ++|
T Consensus        86 ~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~----v~I  161 (270)
T 1j2z_A           86 NLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQF----VRI  161 (270)
T ss_dssp             CEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTT----CEE
T ss_pred             CEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCC----cEe
Confidence            66666555554211   0111111                  11110 1111 36778888888888888877    889


Q ss_pred             CCCCEECCCCeEe
Q 030076          169 GDHSKIDNLVQVG  181 (183)
Q Consensus       169 g~~~~I~~~~~v~  181 (183)
                      |++++|+++++|.
T Consensus       162 G~~a~Ig~~s~V~  174 (270)
T 1j2z_A          162 AKGCMIAGKSALG  174 (270)
T ss_dssp             CTTCEECTTCEEC
T ss_pred             CCceEEecCcEec
Confidence            9999999888873

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.79  E-value=2.9e-18  Score=133.29  Aligned_cols=112  Identities=17%  Similarity=0.235  Sum_probs=84.7

Q ss_pred             CCcEEccceEECCCcEECCCcEEcc-----CcEECCCcEECCCCEECCCCEECCCcEECCCcEEe---------ceEECC
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVHS-----KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS---------NCIIGD  110 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~---------~~~I~~  110 (183)
                      .+..+++++.|++++.|++++.|.+     ++.||++|.|++++.|+.+++||++|.|+.++.|.         +++|++
T Consensus       103 ~g~~I~p~a~I~~~~~Ig~g~~I~~~~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd  182 (276)
T 3gos_A          103 EGFRVVPPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED  182 (276)
T ss_dssp             HCCEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECT
T ss_pred             CCcEECCCcEECCCCEECCCCEEcCCEEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECC
Confidence            3455666677777777776666655     66666666666666776667777777777777774         488999


Q ss_pred             CCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCC-------EECCCCeE
Q 030076          111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS-------KIDNLVQV  180 (183)
Q Consensus       111 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~-------~I~~~~~v  180 (183)
                      +|+||+++.|.+                    ++.||++++|+++++|.++    ++|++.+       .|.+++++
T Consensus       183 ~v~IG~~a~I~~--------------------gv~IG~~avIgagsvV~~~----~~I~~~~~~~~~~g~Vp~~svv  235 (276)
T 3gos_A          183 NCFVGARSEVVE--------------------GVIVEEGSVISMGVFIGQS----TRIYDRETGEVHYGRVPAGSVV  235 (276)
T ss_dssp             TCEECTTCEECT--------------------TCEECTTCEECTTCEECTT----CCEEETTTCCEECSEECTTEEE
T ss_pred             CCEECCCCEECC--------------------CCEECCCCEECCCCEECCC----cEEccccccceeccccCCCcEE
Confidence            999999998887                    8889999999999999887    7777766       77777776

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.78  E-value=7.7e-18  Score=132.71  Aligned_cols=83  Identities=18%  Similarity=0.186  Sum_probs=66.2

Q ss_pred             cccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-----ceEECCCCEEC
Q 030076           41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-----NCIIGDSCIIH  115 (183)
Q Consensus        41 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-----~~~I~~~~~Ig  115 (183)
                      ..+.+...|++++.|++++.|++++.|++++.||++|.|++++.|.++++||++|.|++++.|.     +++||+++.|+
T Consensus         8 ~~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig   87 (305)
T 3t57_A            8 VLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIG   87 (305)
T ss_dssp             -CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEEC
T ss_pred             CeECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEEC
Confidence            3445566677777777777777777777788888888888888888888888889999888886     58999999999


Q ss_pred             CCcEECCC
Q 030076          116 NGVCIGQD  123 (183)
Q Consensus       116 ~~~~i~~~  123 (183)
                      +++.|+.+
T Consensus        88 ~~a~Ig~~   95 (305)
T 3t57_A           88 HHAVVGVK   95 (305)
T ss_dssp             TTCEEEEC
T ss_pred             CccEeCcc
Confidence            99999643

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.78  E-value=1.6e-17  Score=133.44  Aligned_cols=121  Identities=13%  Similarity=0.209  Sum_probs=71.0

Q ss_pred             hhhhhHHHhhhhhhcccchhhhhhhhhc------ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC-
Q 030076           14 KTYKQDFGRFCNLFSTKSDIESRQQFQK------WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG-   86 (183)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~-   86 (183)
                      ..++..+.+...+|.+.... .......      .+..+..|+++++|++++.|++++.|+++++|++++.||++|.|. 
T Consensus        83 ~~p~~~~~~~~~~~~~~~~~-~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~  161 (357)
T 4e79_A           83 DNPYLAFAILTHVFDKKISS-TGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDS  161 (357)
T ss_dssp             SCHHHHHHHHHTTSSCCCCC-CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECT
T ss_pred             CCHHHHHHHHHHHhcccccc-CeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence            45666666666666554333 2222222      334445555555555566666666666655555555555555554 


Q ss_pred             -----CCCEECCCcEECCCcEEe--------------------ceEECCCCEECCCcEECCCCCceeeccCCcc
Q 030076           87 -----PAVTIGQSTNIGFNVALS--------------------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNM  135 (183)
Q Consensus        87 -----~~~~Ig~~~~Ig~~~~i~--------------------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~  135 (183)
                           ++++||++|.|++++.|.                    +++|+++|.|+++++|....++.....+.+.
T Consensus       162 ~~~I~~~~~IG~~~~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~~~~t~Ig~~~~  235 (357)
T 4e79_A          162 YVTITGSSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGALDNTILEDGVI  235 (357)
T ss_dssp             TCEECTTCEECSSCEECTTCEESCCCCCEEEETTEEEECCCCCCEEECTTCEECTTCEECCCSSSCEEECTTCE
T ss_pred             CcEEecccEEEeEeeccCCeEECcccCcccccCCceeeccccCcEEEcCCcEEccccEEeccccCCccccCCcc
Confidence                 455566666666666663                    6889999999999999865444444444443

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.78  E-value=1.4e-17  Score=134.51  Aligned_cols=164  Identities=21%  Similarity=0.263  Sum_probs=96.8

Q ss_pred             hhhhhHHHhhhhhhcccchhhhhhhh------hcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECC
Q 030076           14 KTYKQDFGRFCNLFSTKSDIESRQQF------QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP   87 (183)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~   87 (183)
                      ..++.++.+...+|.+..........      ...+..+..|+++++|++++.|++++.|+++++|++++.||++|.|..
T Consensus        99 ~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~  178 (372)
T 3pmo_A           99 ANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAP  178 (372)
T ss_dssp             SCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcccCC
Confidence            34556666666666544322211111      223455556666666666666666666666666666666666666654


Q ss_pred             C------CEECCCcEECCCcEEe--------------------ceEECCCCEECCCcEECCCCCceeeccCCcccc-CC-
Q 030076           88 A------VTIGQSTNIGFNVALS--------------------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK-KP-  139 (183)
Q Consensus        88 ~------~~Ig~~~~Ig~~~~i~--------------------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~-~~-  139 (183)
                      +      ++||++|.|++++.|.                    +++|+++|.|+++++|....++.+...+++... .. 
T Consensus       179 ~~~I~~~~~IG~~v~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~  258 (372)
T 3pmo_A          179 RVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIM  258 (372)
T ss_dssp             TCEECTTEEECTTCEECTTCEEEECCCCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCE
T ss_pred             CcEEEeeeEECceeeccCCcEEecCcccccccCCcceeccccCCeEECCCCEECCCcEEccCcccceEECCCCEECCCCE
Confidence            4      4555555555555553                    688999999999999875433333333333221 01 


Q ss_pred             -----------------ce-eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          140 -----------------QL-LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       140 -----------------~~-~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                       .. +++.||++||||+++.|.++    ++||++++|++++.|.
T Consensus       259 I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~----v~Ig~~~vI~a~s~V~  314 (372)
T 3pmo_A          259 IAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGH----IEICDNVFVTGMTMVT  314 (372)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSS----CEECSSEEECTTCEEC
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCC----CEECCCCEEeeCCEEc
Confidence                             11 24667777777777777666    7777777777777663

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.78  E-value=1.2e-18  Score=136.95  Aligned_cols=98  Identities=18%  Similarity=0.274  Sum_probs=73.0

Q ss_pred             CCCcEEccceEECCCcEECCCcEEcc-----CcEECCCcEECCCCEECCCCEECCCcEECCCcEEec---------eEEC
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHS-----KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN---------CIIG  109 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~---------~~I~  109 (183)
                      ..+..+++++.|++++.|++++.|.+     ++.||++|.|..++.|+.++.||++|.|+.++.|.+         ++|+
T Consensus       127 ~~g~~I~p~a~I~~~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IG  206 (304)
T 3eg4_A          127 KAGFRAVPNCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIE  206 (304)
T ss_dssp             HHCCEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEEC
T ss_pred             cCCcEEcCCEEECCCcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEc
Confidence            34556777777777777777776666     555555555555555555566666666666666655         8899


Q ss_pred             CCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       110 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      ++|+||+++.|.+                    ++.||++|+|+++++|.++
T Consensus       207 d~v~IG~~a~I~~--------------------gv~IG~~avIgagsvV~~g  238 (304)
T 3eg4_A          207 DNCFIGARSEVVE--------------------GCIVREGSVLGMGVFIGKS  238 (304)
T ss_dssp             TTCEECTTCEECT--------------------TCEECTTCEECTTCEECTT
T ss_pred             CCCEECCCCEEcC--------------------CcEECCCcEECCCCEEcCC
Confidence            9999999999987                    8999999999999999887

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.78  E-value=8e-18  Score=129.83  Aligned_cols=129  Identities=20%  Similarity=0.247  Sum_probs=71.7

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------ceEECCCCEEC
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDSCIIH  115 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------~~~I~~~~~Ig  115 (183)
                      +++++.|++++.|++++.|++++.||++|.|++++.|.++++||++|.|++++.|.             +++|++++.|+
T Consensus        14 I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig   93 (262)
T 2qia_A           14 VEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIR   93 (262)
T ss_dssp             ECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEEC
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeC
Confidence            33344444444444444444444455555555555555555566666666666653             35556666555


Q ss_pred             CCcEECCCCCc---eee------------------ccCCcccc-CCce-eceEECCCCEECCCcEEcCCCCCCeEECCCC
Q 030076          116 NGVCIGQDGFG---FFV------------------DEHGNMLK-KPQL-LNARIGNHVEIGANSCIDRGSWRDTVIGDHS  172 (183)
Q Consensus       116 ~~~~i~~~~~~---~~~------------------~~~~~~~~-~~~~-~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~  172 (183)
                      +++.|......   ...                  ..+..... .... .++.||++++||+++.|.++    ++||+++
T Consensus        94 ~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~----v~Ig~~~  169 (262)
T 2qia_A           94 ESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQF----CIIGAHV  169 (262)
T ss_dssp             TTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT----CEECTTC
T ss_pred             CCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCC----CEECCCC
Confidence            55555432100   011                  01111111 1111 25888888999999999888    9999999


Q ss_pred             EECCCCeEe
Q 030076          173 KIDNLVQVG  181 (183)
Q Consensus       173 ~I~~~~~v~  181 (183)
                      +|+++++|.
T Consensus       170 ~ig~~s~V~  178 (262)
T 2qia_A          170 MVGGCSGVA  178 (262)
T ss_dssp             EECSSCEEC
T ss_pred             EEccCCEEC
Confidence            999999874

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.77  E-value=2.9e-18  Score=126.04  Aligned_cols=62  Identities=24%  Similarity=0.406  Sum_probs=34.1

Q ss_pred             CEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEE
Q 030076           89 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI  168 (183)
Q Consensus        89 ~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~I  168 (183)
                      ++||++|.|++++.|.+++|+++|+|++++.|.+                    ++.||++++|+++++|.++    ..|
T Consensus        88 ~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~--------------------~v~Ig~~~~Ig~~s~V~~g----~~i  143 (189)
T 3r1w_A           88 LIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMD--------------------GAIVEDEVIVAAGATVSPG----KVL  143 (189)
T ss_dssp             EEECSSEEECTTCEEESCEECSSEEECTTCEECT--------------------TCEECSSCEECTTCEECTT----CEE
T ss_pred             eEECCCCEECCCCEEeCcEECCCcEECCCCEEcC--------------------CCEECCCCEEccCCEECCC----CEe
Confidence            3555555555555555555555555555555554                    5555555555555555544    444


Q ss_pred             CCCCEE
Q 030076          169 GDHSKI  174 (183)
Q Consensus       169 g~~~~I  174 (183)
                      ++++++
T Consensus       144 ~~~~vv  149 (189)
T 3r1w_A          144 ESGFVY  149 (189)
T ss_dssp             CTTEEE
T ss_pred             CCCCEE
Confidence            444444

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.77  E-value=4.7e-18  Score=123.46  Aligned_cols=102  Identities=23%  Similarity=0.326  Sum_probs=71.5

Q ss_pred             ECCCcEECCCcEEccC---cEECCCcEECCCCEECC----CCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCce
Q 030076           55 IDSTVLIEVGAIVHSK---AVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF  127 (183)
Q Consensus        55 i~~~~~i~~~~~i~~~---~~ig~~~~I~~~~~I~~----~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~  127 (183)
                      |++++.|++++.|.++   +.||+++.|++++.|..    +++||+++.|++++.|.+++|+++|+|++++.|.+     
T Consensus        31 IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~-----  105 (173)
T 1v3w_A           31 LEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILD-----  105 (173)
T ss_dssp             ECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTTCEECT-----
T ss_pred             ECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCEECCCCEEeC-----
Confidence            3344444444444332   56677777777777753    36788888888888888888888888888888876     


Q ss_pred             eeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE-CCCCeE
Q 030076          128 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI-DNLVQV  180 (183)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I-~~~~~v  180 (183)
                                     ++.||++++|++++++.++    +.|++++++ ++.+.+
T Consensus       106 ---------------~~~Ig~~~~Ig~~s~V~~~----~~i~~~~~v~G~pa~~  140 (173)
T 1v3w_A          106 ---------------GAKIGDHVIIGAGAVVPPN----KEIPDYSLVLGVPGKV  140 (173)
T ss_dssp             ---------------TCEECSSEEECTTCEECTT----CEECTTEEEEETTEEE
T ss_pred             ---------------CCEECCCCEECCCCEECCC----cEeCCCcEEECcCCEE
Confidence                           7888888888888888876    777777777 454443

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.77  E-value=1.8e-17  Score=133.99  Aligned_cols=136  Identities=22%  Similarity=0.270  Sum_probs=86.6

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC------CCCEECCCcEECCCcEEe-----------
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG------PAVTIGQSTNIGFNVALS-----------  104 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~------~~~~Ig~~~~Ig~~~~i~-----------  104 (183)
                      .+..+..|+++++|++++.|++++.|++++.|++++.|+++|.|.      .+++||++|.|++++.|.           
T Consensus       138 ~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~~~~~~~~  217 (374)
T 2iu8_A          138 IIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAF  217 (374)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEEEECSCEEEETT
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEECcCCcccccccC
Confidence            445555666666666666666666666666665555555555554      455666777777777762           


Q ss_pred             ----------ceEECCCCEECCCcEECCCCCceeeccCCccccC-C------------------ce-eceEECCCCEECC
Q 030076          105 ----------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK-P------------------QL-LNARIGNHVEIGA  154 (183)
Q Consensus       105 ----------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~-~------------------~~-~~~~Ig~~~~Ig~  154 (183)
                                .++|+++|+||++++|..+.++++...++++... .                  .. +.+.||++|+|+.
T Consensus       218 ~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~~~~t~ig~~~~i~~~v~I~~~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~  297 (374)
T 2iu8_A          218 GQHKHLKHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGG  297 (374)
T ss_dssp             TEEEECCCCCCEEECTTCEECTTCEEEECSSSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECT
T ss_pred             CceeEeeeeccEEECCCCEECCCcEEccCcccceeECCCcEECCccccCCccEECCCCEEccCcccCCCcEECCCeEEec
Confidence                      3889999999999999876555544444433221 0                  11 2455666666666


Q ss_pred             CcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          155 NSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       155 ~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ++.|.++    ++||++++|++++.|.
T Consensus       298 ~~~i~~~----v~Ig~~~~I~a~s~V~  320 (374)
T 2iu8_A          298 QAGITGH----ICIADHVIMMAQTGVT  320 (374)
T ss_dssp             TCEECSS----CEECTTEEECTTCEEC
T ss_pred             CcEECCC----cccCCCcEEccCceee
Confidence            6666655    7777777777777763

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.77  E-value=4.6e-18  Score=123.53  Aligned_cols=104  Identities=27%  Similarity=0.381  Sum_probs=88.7

Q ss_pred             eEECCCcEECCCcEEccCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEe-----ceEECCCCEECCCcEECCCC
Q 030076           53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALS-----NCIIGDSCIIHNGVCIGQDG  124 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~-----~~~I~~~~~Ig~~~~i~~~~  124 (183)
                      ..+++++.|.+++.+.+++.||+++.|++++.|.+.   ++||++|.|++++.|.     +++|++++.|++++.+.   
T Consensus        11 ~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~---   87 (173)
T 1v3w_A           11 PRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVH---   87 (173)
T ss_dssp             CEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEE---
T ss_pred             CEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEEC---
Confidence            445666666666667778888888888888888764   7999999999999996     58999999999999997   


Q ss_pred             CceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          125 FGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                        +++||++++|++++++.++    ++||+++.|+++++|.
T Consensus        88 ------------------~~~Ig~~~~Ig~~~~i~~~----~~Ig~~~~Ig~~s~V~  122 (173)
T 1v3w_A           88 ------------------GAKVGNYVIIGISSVILDG----AKIGDHVIIGAGAVVP  122 (173)
T ss_dssp             ------------------SCEECSSEEECTTCEECTT----CEECSSEEECTTCEEC
T ss_pred             ------------------CCEECCCCEECCCCEEeCC----CEECCCCEECCCCEEC
Confidence                              7999999999999999988    8888888888888874

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.77  E-value=3.4e-17  Score=130.86  Aligned_cols=164  Identities=20%  Similarity=0.225  Sum_probs=96.5

Q ss_pred             hhhhhHHHhhhhhhcccchhhhhhhh------hcccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC-
Q 030076           14 KTYKQDFGRFCNLFSTKSDIESRQQF------QKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG-   86 (183)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~-   86 (183)
                      ..++..+.+...+|.+..........      ...+..+..|+++++|++++.|++++.|+++++|++++.||++|.|. 
T Consensus        77 ~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~  156 (341)
T 3eh0_A           77 KNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWA  156 (341)
T ss_dssp             SCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECC
Confidence            34555665555555443322212122      23344555555566666666666666666666665555555555554 


Q ss_pred             -----CCCEECCCcEECCCcEE--------------------eceEECCCCEECCCcEECCCCCceeeccCCcccc-C--
Q 030076           87 -----PAVTIGQSTNIGFNVAL--------------------SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK-K--  138 (183)
Q Consensus        87 -----~~~~Ig~~~~Ig~~~~i--------------------~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~-~--  138 (183)
                           ++++||++|.|++++.|                    .+++|+++|.|++++.|....++.....++.... .  
T Consensus       157 ~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~  236 (341)
T 3eh0_A          157 NVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQ  236 (341)
T ss_dssp             SCEECTTCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCE
T ss_pred             CcEECCCCEECCccEEcCCcEECCccccccccCCccccccccCcEEECCCcEECCccEeeccccCceEeccceEECCCCE
Confidence                 45566666667777666                    2478999999999998865433333222222211 1  


Q ss_pred             ----------------Cc-eeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          139 ----------------PQ-LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       139 ----------------~~-~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                      .. .+++.||++||||+++.|.++    +.||++++|++++.|.
T Consensus       237 I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~----v~Ig~~~vv~a~s~V~  292 (341)
T 3eh0_A          237 IAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH----MEICDKVTVTGMGMVM  292 (341)
T ss_dssp             ECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSS----EEECSSEEECTTCEEC
T ss_pred             EeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCC----CEECCCCEEeeCCEEC
Confidence                            11 125777777777777777776    7778888877777763

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.77  E-value=7.4e-18  Score=129.04  Aligned_cols=112  Identities=21%  Similarity=0.295  Sum_probs=78.2

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCc----------EECCCcEECCCCEECC-----------------------CCE
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKA----------VLGANVCIGSGTVVGP-----------------------AVT   90 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~----------~ig~~~~I~~~~~I~~-----------------------~~~   90 (183)
                      ....++++++.+.+++.|++++.|++++          .||++|.|++++.|..                       .++
T Consensus        63 ~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~  142 (247)
T 1qre_A           63 DPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVY  142 (247)
T ss_dssp             CTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEE
T ss_pred             CCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceE
Confidence            3344444444443344555555555544          6777777777777753                       267


Q ss_pred             ECCCcEECCCcEEec-eEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEEC
Q 030076           91 IGQSTNIGFNVALSN-CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG  169 (183)
Q Consensus        91 Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig  169 (183)
                      ||++|.|+++|.|.+ ++|+++|+||+++.|.                     ++.||++++|+++++| ++    +.|+
T Consensus       143 IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~---------------------~v~Ig~~~~IgagsvV-~~----~~I~  196 (247)
T 1qre_A          143 IGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVF---------------------KSKVGNNCVLEPRSAA-IG----VTIP  196 (247)
T ss_dssp             ECTTCEECTTCEEEEEEEECTTCEECTTCEEE---------------------EEEECTTCEECTTCEE-ES----CEEC
T ss_pred             ECCCCEECCCCEEcCCcEECCCCEECCCCEEe---------------------ceEECCCCEECCCCEE-CC----eEeC
Confidence            788888888888866 7788888888888886                     5888888888888888 66    7788


Q ss_pred             CCCEECCCCeEe
Q 030076          170 DHSKIDNLVQVG  181 (183)
Q Consensus       170 ~~~~I~~~~~v~  181 (183)
                      +++++++++++.
T Consensus       197 ~~~~v~~g~vv~  208 (247)
T 1qre_A          197 DGRYIPAGMVVT  208 (247)
T ss_dssp             TTBEECTTCEEC
T ss_pred             CCCEECCCCEEe
Confidence            888888887763

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.76  E-value=1.3e-17  Score=121.04  Aligned_cols=114  Identities=19%  Similarity=0.316  Sum_probs=89.1

Q ss_pred             cCCCcEEccceEE------CCCcEECCCcEEccC---cEECCCcEECCCCEECC----CCEECCCcEECCCcEEeceEEC
Q 030076           43 HNGGGIFHQSACI------DSTVLIEVGAIVHSK---AVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSNCIIG  109 (183)
Q Consensus        43 ~~~~~~i~~~~~i------~~~~~i~~~~~i~~~---~~ig~~~~I~~~~~I~~----~~~Ig~~~~Ig~~~~i~~~~I~  109 (183)
                      +.++..|++++.+      ++++.|++++.|.+.   +.||+++.|++++.|..    .++|+++|.|++++.|.+++|+
T Consensus        15 ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig   94 (173)
T 1xhd_A           15 IASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIK   94 (173)
T ss_dssp             ECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEEC
T ss_pred             ECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEEC
Confidence            4445555555544      444444444544443   56888899999998863    6799999999999999999999


Q ss_pred             CCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE-CCCCeE
Q 030076          110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI-DNLVQV  180 (183)
Q Consensus       110 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I-~~~~~v  180 (183)
                      ++|+|++++.|.+                    ++.||++++|++++++.++    ..|++++++ ++.+.+
T Consensus        95 ~~~~Ig~~~~i~~--------------------~~~Ig~~~~Ig~~s~V~~~----~~i~~~~vv~G~pa~~  142 (173)
T 1xhd_A           95 KDALIGMGSIILD--------------------GAEIGEGAFIGAGSLVSQG----KKIPPNTLAFGRPAKV  142 (173)
T ss_dssp             TTCEECTTCEECT--------------------TCEECTTCEECTTCEECTT----CEECTTEEEEETTEEE
T ss_pred             CCCEEcCCCEEcC--------------------CCEECCCCEECCCCEECCC----cEeCCCCEEECCCCEE
Confidence            9999999999987                    8999999999999999987    778888877 554543

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.76  E-value=1.2e-17  Score=125.03  Aligned_cols=85  Identities=22%  Similarity=0.296  Sum_probs=55.1

Q ss_pred             cEECCCcEECCCCEECC--------------CCEECCCcEECCCcEEec-eEECCCCEECCCcEECCCCCceeeccCCcc
Q 030076           71 AVLGANVCIGSGTVVGP--------------AVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCIGQDGFGFFVDEHGNM  135 (183)
Q Consensus        71 ~~ig~~~~I~~~~~I~~--------------~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~  135 (183)
                      +.||++|.|++++.|..              .++||++|.|++++.|.+ ++|+++|+||+++.|.              
T Consensus        80 v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~--------------  145 (213)
T 3kwd_A           80 FHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVF--------------  145 (213)
T ss_dssp             EEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEE--------------
T ss_pred             eEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCCCEECCCCEECCCCEEe--------------
Confidence            34555666666665543              256666666666666655 6777777777777775              


Q ss_pred             ccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          136 LKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       136 ~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                             +++||++++|+++++|. +    ++|++++.|++++++.
T Consensus       146 -------~~~Ig~~~~Igags~V~-~----~~i~~~~~v~~~~vv~  179 (213)
T 3kwd_A          146 -------NARVGAGCVVMMHVLIQ-D----VEIPPGKYVPSGMVIT  179 (213)
T ss_dssp             -------EEEECTTCEECSSCEEE-S----CEECTTBEECTTCEEC
T ss_pred             -------CcEECCCCEEcCCCEEC-C----cEeCCCCEECCCcEEc
Confidence                   57777777777777773 4    6666666666666654

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.76  E-value=3e-17  Score=126.44  Aligned_cols=88  Identities=19%  Similarity=0.252  Sum_probs=52.9

Q ss_pred             CCCCEECCCcEECCCcEEe-------ceEECCCCEECCCcEECCCCCceeeccCCcccc-CCce-eceEECCCCEECCCc
Q 030076           86 GPAVTIGQSTNIGFNVALS-------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK-KPQL-LNARIGNHVEIGANS  156 (183)
Q Consensus        86 ~~~~~Ig~~~~Ig~~~~i~-------~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~Ig~~~~Ig~~~  156 (183)
                      ...++||+++.|++++.|.       .+.|++++.|++++.|.++    ....+..... .... .++.||++++||+++
T Consensus        77 ~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~----~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a  152 (259)
T 3hsq_A           77 LTKTVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHD----CILGNNNILTHGAVLAGHVTLGNFAFISGLV  152 (259)
T ss_dssp             CCCEEECSSCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTT----CEECSSCEECTTCEECTTCEECSSCEECSSE
T ss_pred             CCcEEECCCcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCC----cEECCccEEcCCceECCccEECCCcEEeCCC
Confidence            3344555555555555554       4555555555555554432    1111111111 1112 368899999999999


Q ss_pred             EEcCCCCCCeEECCCCEECCCCeEe
Q 030076          157 CIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       157 ~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +|.++    ++||++++|+++++|.
T Consensus       153 ~V~~~----v~Ig~~~~Vg~~s~V~  173 (259)
T 3hsq_A          153 AVHQF----CFVGDYSMVAGLAKVV  173 (259)
T ss_dssp             EECTT----CEECTTCEECSSEEEC
T ss_pred             EECCC----CEECCCCEECCCCEEc
Confidence            99988    9999999999998874

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.76  E-value=2.3e-17  Score=127.82  Aligned_cols=76  Identities=24%  Similarity=0.413  Sum_probs=43.4

Q ss_pred             cEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCC--------------CEECCCcEECCCcEE-eceEECCC
Q 030076           47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA--------------VTIGQSTNIGFNVAL-SNCIIGDS  111 (183)
Q Consensus        47 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~--------------~~Ig~~~~Ig~~~~i-~~~~I~~~  111 (183)
                      ..|++++.|++++.|++++.|++++.||+++.|++++.|+..              ++||++|.|++++.| .++.|+++
T Consensus        15 a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~Ig~~   94 (273)
T 3fs8_A           15 VIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTIIGDN   94 (273)
T ss_dssp             CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCEECTT
T ss_pred             cEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCEECCC
Confidence            333344444444444444444444444555555555555443              566777777777776 46777777


Q ss_pred             CEECCCcEECC
Q 030076          112 CIIHNGVCIGQ  122 (183)
Q Consensus       112 ~~Ig~~~~i~~  122 (183)
                      +.|++++.|.+
T Consensus        95 ~~Ig~~~~I~~  105 (273)
T 3fs8_A           95 FQTGHKVTIRE  105 (273)
T ss_dssp             CEECSSCEECS
T ss_pred             CEECCceEECC
Confidence            77777777764

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.76  E-value=1.8e-17  Score=130.79  Aligned_cols=111  Identities=18%  Similarity=0.235  Sum_probs=71.4

Q ss_pred             CcEEccceEECCCcEECCCcEEcc-----CcEECCCcEECCCCEECCCCEECCCcEECCCcEEec---------eEECCC
Q 030076           46 GGIFHQSACIDSTVLIEVGAIVHS-----KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN---------CIIGDS  111 (183)
Q Consensus        46 ~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~---------~~I~~~  111 (183)
                      +..+++++.|++++.|++++.|.+     ++.||++|.|..++.|++++.||++|.|+.++.|.+         ++|+++
T Consensus       145 ~~~I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~  224 (316)
T 3tk8_A          145 GFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDN  224 (316)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTT
T ss_pred             CcEEeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCC
Confidence            455666666666666666665555     444555555555555555556666666666665543         677777


Q ss_pred             CEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCC-------EECCCCeE
Q 030076          112 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHS-------KIDNLVQV  180 (183)
Q Consensus       112 ~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~-------~I~~~~~v  180 (183)
                      |+||+++.|.+                    ++.||++++|+++++|.++    +.|++.+       .|.++++|
T Consensus       225 v~IG~~a~I~~--------------------gv~IG~g~vIgagsvV~~~----t~I~d~~~~~v~~g~Vp~gsvV  276 (316)
T 3tk8_A          225 CFIGARSEVVE--------------------GVIVEENSVISMGVYLGQS----TKIYDRETGEVTYGRIPAGSVV  276 (316)
T ss_dssp             CEECTTCEECT--------------------TCEECTTCEECTTCEECTT----CCEEETTTCCEECSEECTTEEE
T ss_pred             CEECCCCEEcC--------------------CCEECCCCEEcCCCEEcCC----eeecccccccccccEeCCCCEE
Confidence            77777777776                    7777888888888777776    5555544       55555555

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.76  E-value=2.5e-17  Score=121.71  Aligned_cols=111  Identities=21%  Similarity=0.275  Sum_probs=89.4

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCc---------EECCCcEECCCCEECC----------------CCEECCCcE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKA---------VLGANVCIGSGTVVGP----------------AVTIGQSTN   96 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~---------~ig~~~~I~~~~~I~~----------------~~~Ig~~~~   96 (183)
                      .+.++..|++++.|.+++.|++++.|++++         .||++|.|++++.|..                .++|++++.
T Consensus        14 ~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~   93 (194)
T 3tv0_A           14 KIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNV   93 (194)
T ss_dssp             EECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCE
T ss_pred             EECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcce
Confidence            445566666666666777777777777665         4667777777777632                347899999


Q ss_pred             ECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECC
Q 030076           97 IGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDN  176 (183)
Q Consensus        97 Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~  176 (183)
                      |+.++.+.++.|+++|+|+.++.|.+                    ++.||++|+|+++++|.++    +.|++++++.-
T Consensus        94 i~~~~~i~~~~Ig~~~~Ig~~~~I~~--------------------gv~IG~~~~IgagsvV~~~----~~Ip~~svv~G  149 (194)
T 3tv0_A           94 FEVGCYSQAMKMGDNNVIESKAYVGR--------------------NVILTSGCIIGACCNLNTF----EVIPENTVIYG  149 (194)
T ss_dssp             ECTTCEECCSEECSSCEECTTCEECT--------------------TEEECSSCEECTTCEECCC----EEECTTEEEES
T ss_pred             EecceeEeeeeecccceecceeeECC--------------------eEEECCCCEECCCCEECCC----cEECCCCEEEC
Confidence            99999999999999999999999998                    9999999999999999988    88888887754

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.76  E-value=1.8e-17  Score=124.10  Aligned_cols=103  Identities=24%  Similarity=0.243  Sum_probs=86.2

Q ss_pred             eEECCCcEECCCcEEccCcEECCCcEECCCCEECC----CCEECCCcEECCCcEEec---------------eEECCCCE
Q 030076           53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSN---------------CIIGDSCI  113 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~----~~~Ig~~~~Ig~~~~i~~---------------~~I~~~~~  113 (183)
                      ..+++++.|.+++.|.+++.||++|.|++++.|.+    .++||++|.|+++|.|..               ++|+++|+
T Consensus        40 ~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~  119 (213)
T 3kwd_A           40 PEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVS  119 (213)
T ss_dssp             CEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCE
T ss_pred             CcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcE
Confidence            45666666666777777778888888888888854    478999999999999863               88999999


Q ss_pred             ECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          114 IHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       114 Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      |++++.|..                    ++.||++|+||++++|. +    ++||++++|+++++|
T Consensus       120 Ig~~~~I~~--------------------~v~Ig~~v~IG~~a~I~-~----~~Ig~~~~Igags~V  161 (213)
T 3kwd_A          120 ITHMALIHG--------------------PAYIGDGCFIGFRSTVF-N----ARVGAGCVVMMHVLI  161 (213)
T ss_dssp             ECTTCEEEE--------------------EEEECTTCEECTTCEEE-E----EEECTTCEECSSCEE
T ss_pred             ECCCcEEcC--------------------CCEECCCCEECCCCEEe-C----cEECCCCEEcCCCEE
Confidence            999999985                    69999999999999997 3    889999999999988

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.75  E-value=4.7e-17  Score=125.38  Aligned_cols=133  Identities=16%  Similarity=0.208  Sum_probs=92.2

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE--------------eceEEC
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL--------------SNCIIG  109 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i--------------~~~~I~  109 (183)
                      .+...|++++.|++++.|++.+.|++++.||++|.|++++.|.++++||++|.|++++.|              .+++||
T Consensus         4 ~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG   83 (259)
T 3hsq_A            4 HPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIG   83 (259)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEEC
T ss_pred             CCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEEC
Confidence            345567777888888888888888888888888888888888888899999999999999              468899


Q ss_pred             CCCEECCCcEECCCCC--ceeeccCCcccc-CCce-eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          110 DSCIIHNGVCIGQDGF--GFFVDEHGNMLK-KPQL-LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       110 ~~~~Ig~~~~i~~~~~--~~~~~~~~~~~~-~~~~-~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      ++|.|++++.|.....  +.....+..... .... .++.||++++++.++.+..+    ++||+++.|++++.|
T Consensus        84 ~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~----v~Igd~~~Ig~~a~V  154 (259)
T 3hsq_A           84 DHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGH----VTLGNFAFISGLVAV  154 (259)
T ss_dssp             SSCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT----CEECSSCEECSSEEE
T ss_pred             CCcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCc----cEECCCcEEeCCCEE
Confidence            9999999999985322  112222222111 1222 25566666666666666554    666666666666655

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.75  E-value=1.7e-17  Score=137.02  Aligned_cols=130  Identities=17%  Similarity=0.256  Sum_probs=89.9

Q ss_pred             EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCC---
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG---  124 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~---  124 (183)
                      .+.+++.+++++.|++++.|.+++.||++|.|++++.|++ ++||++|.|++++.|.+++|+++|.|++++.|.+..   
T Consensus       264 ~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~-~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig  342 (459)
T 4fce_A          264 DLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKN-CVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELA  342 (459)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEES-CEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEEC
T ss_pred             EEeCcEEECCCcEECCCeeeccceEECCCCEECCCCEEec-cEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEEC
Confidence            4556667777777777777777777777777777777763 677888888877777777777777777766665320   


Q ss_pred             ----Cce------e-----------------eccCCcccc-CC--------ceeceEECCCCEECCCcEEcCCCCCCeEE
Q 030076          125 ----FGF------F-----------------VDEHGNMLK-KP--------QLLNARIGNHVEIGANSCIDRGSWRDTVI  168 (183)
Q Consensus       125 ----~~~------~-----------------~~~~~~~~~-~~--------~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~I  168 (183)
                          ++.      .                 ...+..... ..        ...++.||++||||++++|.+|    ++|
T Consensus       343 ~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~g----v~I  418 (459)
T 4fce_A          343 EGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP----VTV  418 (459)
T ss_dssp             TTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESS----EEE
T ss_pred             CCcEECCCeEEeeeEEcCCCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCC----cEE
Confidence                000      0                 000111110 00        1126899999999999999988    999


Q ss_pred             CCCCEECCCCeEee
Q 030076          169 GDHSKIDNLVQVGF  182 (183)
Q Consensus       169 g~~~~I~~~~~v~~  182 (183)
                      |++|+|+++++|.+
T Consensus       419 g~~~~igagsvV~~  432 (459)
T 4fce_A          419 ANGATIGAGTTVTR  432 (459)
T ss_dssp             CTTCEECTTCEECS
T ss_pred             CCCCEECCCCEEcc
Confidence            99999999999853

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.75  E-value=1.7e-17  Score=121.75  Aligned_cols=109  Identities=22%  Similarity=0.328  Sum_probs=86.1

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCc---------EECCCcEECCCCEE-----------CCCCEECCCcEECCCc
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKA---------VLGANVCIGSGTVV-----------GPAVTIGQSTNIGFNV  101 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~---------~ig~~~~I~~~~~I-----------~~~~~Ig~~~~Ig~~~  101 (183)
                      .+..+..|++++.+.+++.|++++.|++++         .||++|.|++++.|           ...++||++|.|++++
T Consensus        17 ~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~   96 (187)
T 3r3r_A           17 GIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKV   96 (187)
T ss_dssp             EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTC
T ss_pred             ccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCC
Confidence            344555555555555555555555554443         77888888888888           4678999999999999


Q ss_pred             EEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076          102 ALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI  174 (183)
Q Consensus       102 ~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I  174 (183)
                      .|.+++|+++|+|++++.|.+                    ++.||++++|+++++|.++    ..|++++++
T Consensus        97 ~i~~~~Ig~~~~Ig~~~~I~~--------------------~~~Ig~~~~Ig~~s~V~~~----~~i~~~~vv  145 (187)
T 3r3r_A           97 MLHGCTIGNRVLVGMGSIVLD--------------------GAIIEDDVMIGAGSLVPQH----KRLESGYLY  145 (187)
T ss_dssp             EEESCEECSSEEECTTCEECT--------------------TCEECSSEEECTTCEECTT----CEECTTEEE
T ss_pred             EEeCcEECCCCEECCCCEECC--------------------CCEECCCCEECCCCEECCC----cCcCCCcEE
Confidence            999999999999999999987                    8999999999999999987    777777763

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.75  E-value=2.1e-17  Score=121.37  Aligned_cols=104  Identities=23%  Similarity=0.344  Sum_probs=88.9

Q ss_pred             eEECCCcEECCCcEEccCcEECCCcEECCCCEECC---CCEECCCcEECCCcEEec------------eEECCCCEECCC
Q 030076           53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVALSN------------CIIGDSCIIHNG  117 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i~~------------~~I~~~~~Ig~~  117 (183)
                      ..+++++.|++++.|.+++.||+++.|++++.|.+   .+.||++|.|++++.|..            ++|+++|+|+++
T Consensus        20 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~   99 (189)
T 3r1w_A           20 PKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQ   99 (189)
T ss_dssp             CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTT
T ss_pred             CEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCC
Confidence            45666666666777777888888888888888874   459999999999999965            499999999999


Q ss_pred             cEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       118 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +.|.                     +++||++|+|+++++|.++    ++||++++|+++++|.
T Consensus       100 ~~i~---------------------~~~Ig~~~~Ig~~~~i~~~----v~Ig~~~~Ig~~s~V~  138 (189)
T 3r1w_A          100 AMLH---------------------GCTIGNRVLIGMKSMIMDG----AIVEDEVIVAAGATVS  138 (189)
T ss_dssp             CEEE---------------------SCEECSSEEECTTCEECTT----CEECSSCEECTTCEEC
T ss_pred             CEEe---------------------CcEECCCcEECCCCEEcCC----CEECCCCEEccCCEEC
Confidence            9997                     7999999999999999988    8999999999998885

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.75  E-value=9.2e-17  Score=124.44  Aligned_cols=121  Identities=21%  Similarity=0.281  Sum_probs=75.2

Q ss_pred             CcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCC--ceeeccCCc
Q 030076           58 TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGF--GFFVDEHGN  134 (183)
Q Consensus        58 ~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~--~~~~~~~~~  134 (183)
                      ++.|.+++.|.+++.|++++.|++++.|+++++|++++.|+.++.|. +++|+++|.|++++.|.++..  ++....+..
T Consensus        76 ~~~I~~~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~  155 (273)
T 3fs8_A           76 NALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHV  155 (273)
T ss_dssp             TCEECTTCEEESSCEECTTCEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred             CCEECCCCEEeCCCEECCCCEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCce
Confidence            33333344444445555555555566665566666666666666663 566666666666666664310  011111111


Q ss_pred             c------ccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          135 M------LKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       135 ~------~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      .      .....+.++.||++||||++++|.+|    ++||++|+|+++++|.+
T Consensus       156 ~i~~~~~~~~~~~~~v~Ig~~~~IG~~~~I~~g----~~IG~~~~IgagsvV~~  205 (273)
T 3fs8_A          156 VLTNDPTPPSNELLGVTIELFAVIAARSVVLPG----IHINEDALVGAGAVVTK  205 (273)
T ss_dssp             EECCCSSSSCSCCCCCEECTTCEECTTCEECTT----CEECTTCEECTTCEECS
T ss_pred             EecCCCCCcccccCCcEECCCeEEcCCCEEcCC----CEECCCCEECCCCEECc
Confidence            1      11123447999999999999999999    99999999999999853

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.75  E-value=3.6e-17  Score=120.58  Aligned_cols=109  Identities=21%  Similarity=0.287  Sum_probs=87.7

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCc---------EECCCcEECCCCEECC-----CCEECCCcEECCCcEEeceE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKA---------VLGANVCIGSGTVVGP-----AVTIGQSTNIGFNVALSNCI  107 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~---------~ig~~~~I~~~~~I~~-----~~~Ig~~~~Ig~~~~i~~~~  107 (183)
                      .+..+..|++++.|.+++.|++++.|++++         .||++|.|++++.|..     +++|+++|.|++++.|.+++
T Consensus        35 ~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~  114 (191)
T 3ixc_A           35 SVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACT  114 (191)
T ss_dssp             EECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCE
T ss_pred             EECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCE
Confidence            345555666666555555555555555544         5588899999999863     77999999999999999999


Q ss_pred             ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076          108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI  174 (183)
Q Consensus       108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I  174 (183)
                      |+++|+|++++.|.+                    ++.||++++|+++++|.++    ..|++++++
T Consensus       115 Ig~~~~Ig~~~~I~~--------------------~~~Ig~~~~Ig~gsvV~~~----~~i~~~~~v  157 (191)
T 3ixc_A          115 LGNNAFVGMGSIVMD--------------------RAVMEEGSMLAAGSLLTRG----KIVKSGELW  157 (191)
T ss_dssp             ECTTCEECTTCEECT--------------------TCEECTTCEECTTCEECTT----CEECTTEEE
T ss_pred             ECCCCEECCCCEEeC--------------------CeEECCCCEECCCCEECCC----cCcCCCeEE
Confidence            999999999999997                    8999999999999999987    777777764

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.74  E-value=1.8e-17  Score=136.65  Aligned_cols=76  Identities=25%  Similarity=0.304  Sum_probs=60.1

Q ss_pred             CcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076           46 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        46 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~  122 (183)
                      ...+++++.|++++.|++++.|++++.||++|.|++++.|+ +++||++|.|++++.|.+++|++++.|++++.|.+
T Consensus       259 ~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~  334 (456)
T 2v0h_A          259 RFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRP  334 (456)
T ss_dssp             GEEEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEE-EEEECTTCEECSSCEEEEEEECTTCEECSSEEECT
T ss_pred             ccEEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEE-eEEEeCCCEEcCCeEEccCcCCCCcEECCccEECC
Confidence            34566677777788888888887888888888888888886 66888888888888888888888888887777764

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.74  E-value=1e-16  Score=126.31  Aligned_cols=137  Identities=18%  Similarity=0.127  Sum_probs=85.6

Q ss_pred             cccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECC----------CCEECCCcEECCCcEEe------
Q 030076           41 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----------AVTIGQSTNIGFNVALS------  104 (183)
Q Consensus        41 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~----------~~~Ig~~~~Ig~~~~i~------  104 (183)
                      ..+.++..|++.++|++++.|++++.|++++.|.+++.||++|.|.+          .++||+++.|++++.|.      
T Consensus        20 a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~Ig~~~q~~   99 (305)
T 3t57_A           20 AVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDL   99 (305)
T ss_dssp             SEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEEEECCCCT
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEeCcccccc
Confidence            34566666666666666666666666666555554444444444443          34666777777777772      


Q ss_pred             --------ceEECCCCEECCCcEECCCCC--ceeec------------------cCCcccc-CCce-eceEECCCCEECC
Q 030076          105 --------NCIIGDSCIIHNGVCIGQDGF--GFFVD------------------EHGNMLK-KPQL-LNARIGNHVEIGA  154 (183)
Q Consensus       105 --------~~~I~~~~~Ig~~~~i~~~~~--~~~~~------------------~~~~~~~-~~~~-~~~~Ig~~~~Ig~  154 (183)
                              ...||+++.|++++.|.....  +.+..                  .+...+. .... +++.||+++|||+
T Consensus       100 ~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v~Igd~~~Ig~  179 (305)
T 3t57_A          100 KYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAG  179 (305)
T ss_dssp             TCCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECT
T ss_pred             ceecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCCCEECCceEEcC
Confidence                    256777777776666653210  01111                  1111111 1122 3688999999999


Q ss_pred             CcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          155 NSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       155 ~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ++.|.++    ++||++|+|+++++|.
T Consensus       180 ~~~V~~~----v~IG~~a~ig~gs~V~  202 (305)
T 3t57_A          180 ASVVHQF----CHIGSFAFIGGGSVVS  202 (305)
T ss_dssp             TCEECTT----CEECTTCEECTTCEEC
T ss_pred             CCEEcCC----eEECCCCEEcCCCeEc
Confidence            9999988    9999999999999984

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.74  E-value=8e-17  Score=121.15  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=16.9

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      ++.||++|+||+++++.++    ++||++++|+++++|
T Consensus       165 ~v~Ig~~~~Ig~~~~i~~~----~~Ig~~~~igagsvv  198 (220)
T 4ea9_A          165 GVSVGERAFLGVGARVIPG----VTIGADTIVGAGGVV  198 (220)
T ss_dssp             SCEECTTCEECTTCEECTT----CEECTTCEECTTCEE
T ss_pred             CCEECCCCEECCCCEEcCC----cEECCCCEECCCCEE
Confidence            4455555555555555444    455555555554444

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.74  E-value=6e-17  Score=134.07  Aligned_cols=128  Identities=22%  Similarity=0.265  Sum_probs=74.1

Q ss_pred             EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCC---
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDG---  124 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~---  124 (183)
                      .+++++.|++++.|++++.|.+++.||++|.|++++.|+ ++.||++|.|+ ++.|.+++|+++|.|++++.|.++.   
T Consensus       270 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig  347 (468)
T 1hm9_A          270 YIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVV-DSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLG  347 (468)
T ss_dssp             EECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEE-SCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEEC
T ss_pred             EECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEe-ccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEEC
Confidence            455555566666666666666666666666666666664 44566666666 5555555555555555555554210   


Q ss_pred             ----Cce-e----------------------eccCCcccc-CC--------ceeceEECCCCEECCCcEEcCCCCCCeEE
Q 030076          125 ----FGF-F----------------------VDEHGNMLK-KP--------QLLNARIGNHVEIGANSCIDRGSWRDTVI  168 (183)
Q Consensus       125 ----~~~-~----------------------~~~~~~~~~-~~--------~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~I  168 (183)
                          ++. .                      ...+..... ..        ...++.||++|+||++++|.++    ++|
T Consensus       348 ~~~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~----v~I  423 (468)
T 1hm9_A          348 AQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAP----VEL  423 (468)
T ss_dssp             TTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESS----CEE
T ss_pred             CccEECCCcEEeeeEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCC----cEE
Confidence                000 0                      000000000 00        0125888888888888888877    888


Q ss_pred             CCCCEECCCCeEe
Q 030076          169 GDHSKIDNLVQVG  181 (183)
Q Consensus       169 g~~~~I~~~~~v~  181 (183)
                      |++++|+++++|.
T Consensus       424 g~~~~i~~~s~v~  436 (468)
T 1hm9_A          424 GDNSLVGAGSTIT  436 (468)
T ss_dssp             CTTCEECTTCEEC
T ss_pred             CCCCEECCCCEEC
Confidence            9999999888874

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.73  E-value=1.1e-16  Score=118.20  Aligned_cols=34  Identities=26%  Similarity=0.462  Sum_probs=18.1

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      ++.||++++|++++++.++    ++||++++|+++++|
T Consensus       143 ~~~Ig~~~~Ig~~~~i~~~----~~Ig~~~~Igagsvv  176 (194)
T 3bfp_A          143 NVKIGKNCFLGINSCVLPN----LSLADDSILGGGATL  176 (194)
T ss_dssp             TCEECTTCEECTTCEECTT----CEECTTCEECTTCEE
T ss_pred             CcEECCCCEEcCCCEECCC----CEECCCCEECCCCEE
Confidence            4555555555555555544    555555555555544

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.73  E-value=1.6e-16  Score=117.05  Aligned_cols=111  Identities=15%  Similarity=0.188  Sum_probs=71.9

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEE------CCCcEECCCcEE------------
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI------GQSTNIGFNVAL------------  103 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~I------g~~~~Ig~~~~i------------  103 (183)
                      .++.+..|.+.+.|.+++.|++++.|++++.|+.++.||+++.|+.++.|      ++++.|++++.+            
T Consensus        17 ~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~   96 (192)
T 3mqg_A           17 RIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIER   96 (192)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCSSCBTTBCC
T ss_pred             EECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEecccCCcccccc
Confidence            34455555555555555666666666655555555555555555544444      444444444443            


Q ss_pred             ----eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC-eEECCCC
Q 030076          104 ----SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD-TVIGDHS  172 (183)
Q Consensus       104 ----~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~-~~Ig~~~  172 (183)
                          .+++|+++|+||.++.|.+                    ++.||++++|++++++.+..++. .+.|..+
T Consensus        97 ~~~~~~~~Ig~~v~IG~~~~I~~--------------------g~~Ig~~~~IgagsvV~~~vp~~~v~~G~PA  150 (192)
T 3mqg_A           97 KSEYRDTIVRQGATLGANCTVVC--------------------GATIGRYAFVGAGAVVNKDVPDFALVVGVPA  150 (192)
T ss_dssp             GGGCCCEEECTTCEECTTCEECT--------------------TCEECTTCEECTTCEECSCBCTTEEEETTTT
T ss_pred             ccccCCcEECCCcEECCCCEECC--------------------CCEECCCCEEcCCCEECcccCCCCEEEccCC
Confidence                3578999999999999987                    89999999999999998765433 3334433

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.72  E-value=2.6e-16  Score=118.35  Aligned_cols=112  Identities=21%  Similarity=0.329  Sum_probs=79.4

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEec-eEECCCCEECCCcEECC
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i~~  122 (183)
                      .....+.+.+.+++++.|++++.|.+++.||++|.|++++.|+.+++||++|.|++++.|.+ ++|+++|+|++++.|.+
T Consensus       103 ~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~  182 (220)
T 4ea9_A          103 HPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIP  182 (220)
T ss_dssp             CTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECT
T ss_pred             CCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcC
Confidence            33444444455555555555555555666666666666666666667777777777777754 89999999999999987


Q ss_pred             CCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCC-CCeEECCCCEEC
Q 030076          123 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW-RDTVIGDHSKID  175 (183)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~-~~~~Ig~~~~I~  175 (183)
                                          ++.||+++.|++++++.++.+ ..++.|..+.|-
T Consensus       183 --------------------~~~Ig~~~~igagsvv~~~v~~~~~~~G~Pa~i~  216 (220)
T 4ea9_A          183 --------------------GVTIGADTIVGAGGVVVRDLPDSVLAIGVPAKIK  216 (220)
T ss_dssp             --------------------TCEECTTCEECTTCEECSCBCTTCEEETTTTEEC
T ss_pred             --------------------CcEECCCCEECCCCEEccccCCCcEEEEeCCEEe
Confidence                                899999999999999988763 345666666553

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.72  E-value=2.2e-16  Score=116.69  Aligned_cols=96  Identities=19%  Similarity=0.423  Sum_probs=65.0

Q ss_pred             cEEccceEECCCcEEC--CCcEEccCcEECCCcEECC------CCEECCCCEECCCcEECCCcEEec-eEECCCCEECCC
Q 030076           47 GIFHQSACIDSTVLIE--VGAIVHSKAVLGANVCIGS------GTVVGPAVTIGQSTNIGFNVALSN-CIIGDSCIIHNG  117 (183)
Q Consensus        47 ~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~I~~------~~~I~~~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~  117 (183)
                      ..+++.+++++++.|+  +++.|.+++.|++++.||+      ++.|+.++.||++|.|++++.|.+ ++|+++|+|+++
T Consensus        76 ~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~  155 (194)
T 3bfp_A           76 NLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGIN  155 (194)
T ss_dssp             CEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             cccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCC
Confidence            3455666666555565  5555555555555454444      455555556666666666666654 788888888888


Q ss_pred             cEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076          118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (183)
Q Consensus       118 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~  162 (183)
                      +.+.+                    ++.||++++|++++++.++.
T Consensus       156 ~~i~~--------------------~~~Ig~~~~Igagsvv~~~v  180 (194)
T 3bfp_A          156 SCVLP--------------------NLSLADDSILGGGATLVKNQ  180 (194)
T ss_dssp             CEECT--------------------TCEECTTCEECTTCEECSCB
T ss_pred             CEECC--------------------CCEECCCCEECCCCEEcccc
Confidence            88876                    88899999999999998775

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.72  E-value=6.9e-17  Score=123.99  Aligned_cols=107  Identities=24%  Similarity=0.247  Sum_probs=83.7

Q ss_pred             CcEECCCcEECCCCEEC--CCCEECCCcEECCCcEEe----ceEECCCCEECCCcEECCCCCceeeccCCccccCCceec
Q 030076           70 KAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVALS----NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLN  143 (183)
Q Consensus        70 ~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i~----~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~  143 (183)
                      ++.||+++.|.+++.|.  ..++||++|.|++++.|.    +++||++|.|++++.|.+.+.+.... ..........++
T Consensus        85 ~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~-~~~~~~~~~~~~  163 (252)
T 3jqy_B           85 YVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFD-IHSKKRINWAKD  163 (252)
T ss_dssp             EEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEE-TTTCBBCCCCCC
T ss_pred             eEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCccccc-ccccccccccCC
Confidence            44566666666666663  367999999999999997    89999999999999998754332221 122223344558


Q ss_pred             eEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          144 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       144 ~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ++||++|+||++++|.++    ++||++|+|+++++|.
T Consensus       164 v~Igd~v~IG~~a~I~~g----v~IG~~~~IgagsvV~  197 (252)
T 3jqy_B          164 IIISSYVWVGRNVSIMKG----VSVGSGSVIGYGSIVT  197 (252)
T ss_dssp             EEECSSCEECSSEEECTT----CEECTTCEECTTCEEC
T ss_pred             eEEecCcEECCCCEECCC----CEECCCCEECCCCEEC
Confidence            999999999999999998    9999999999999985

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.72  E-value=2.8e-16  Score=121.12  Aligned_cols=64  Identities=25%  Similarity=0.363  Sum_probs=36.2

Q ss_pred             CCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEE
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCII  108 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I  108 (183)
                      .+..|+|.++|++++.|++++.|++++.|++++.|++++.|+++++|+.++.||++|.|. ++.|
T Consensus         4 ~~~~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I   68 (262)
T 2qia_A            4 KSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASI   68 (262)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEE
T ss_pred             CCCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEE
Confidence            344555666666666666666666666665555555555555555555555555555552 3444

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.71  E-value=2.2e-16  Score=123.14  Aligned_cols=79  Identities=24%  Similarity=0.335  Sum_probs=53.1

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEEC------------C
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIG------------D  110 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~------------~  110 (183)
                      .....|+|.+.|.+++.|++++.|+++++|++++.||+++.|..+++|+.++.||++|.|. ++.|+            .
T Consensus        20 ~~~~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~   99 (283)
T 4eqy_A           20 GSMSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPT   99 (283)
T ss_dssp             ---CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCC
T ss_pred             CCCcccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCc
Confidence            3344577777777777777777777777777777777777777777777777777777763 45563            2


Q ss_pred             CCEECCCcEECC
Q 030076          111 SCIIHNGVCIGQ  122 (183)
Q Consensus       111 ~~~Ig~~~~i~~  122 (183)
                      ++.||+++.|++
T Consensus       100 ~v~IG~~~~Ig~  111 (283)
T 4eqy_A          100 RLVIGDRNTIRE  111 (283)
T ss_dssp             EEEECSSCEECT
T ss_pred             eEEECCCcccCc
Confidence            566677777764

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.71  E-value=1.8e-16  Score=121.33  Aligned_cols=104  Identities=20%  Similarity=0.329  Sum_probs=86.7

Q ss_pred             ceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCC----EECCCcEECCCcEEe-----------------------
Q 030076           52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV----TIGQSTNIGFNVALS-----------------------  104 (183)
Q Consensus        52 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~----~Ig~~~~Ig~~~~i~-----------------------  104 (183)
                      ...|++++.|++++.|.+++.||+++.|++++.|.+..    +||++|.|+++|.|.                       
T Consensus        59 ~~~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~  138 (247)
T 1qre_A           59 APVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKE  138 (247)
T ss_dssp             CCEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEE
T ss_pred             CcEECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCcc
Confidence            35567777777777777788888888888888887654    899999999999985                       


Q ss_pred             -ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          105 -NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       105 -~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                       +++||++|.|++++.|..                    +++||++|+||+++++.+     ++||+++.|+++++|
T Consensus       139 ~~v~IG~~v~Ig~~~~I~~--------------------~~~Ig~~v~IG~~a~I~~-----v~Ig~~~~IgagsvV  190 (247)
T 1qre_A          139 YAVYIGNNVSLAHQSQVHG--------------------PAAVGDDTFIGMQAFVFK-----SKVGNNCVLEPRSAA  190 (247)
T ss_dssp             ESEEECTTCEECTTCEEEE--------------------EEEECTTCEECTTCEEEE-----EEECTTCEECTTCEE
T ss_pred             CceEECCCCEECCCCEEcC--------------------CcEECCCCEECCCCEEec-----eEECCCCEECCCCEE
Confidence             389999999999999984                    699999999999999873     778888888888877

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.71  E-value=2.1e-17  Score=129.39  Aligned_cols=109  Identities=18%  Similarity=0.171  Sum_probs=81.1

Q ss_pred             EECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCC
Q 030076           54 CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHG  133 (183)
Q Consensus        54 ~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~  133 (183)
                      .+.+++.|++.++|.+++.||+++.|+++++|..++.|+++|.|..++.+. ++||++|.|++++.|..+.         
T Consensus       180 vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~---------  249 (347)
T 3r5d_A          180 VVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAG-VFVGKGSDLGGGCSTMGTL---------  249 (347)
T ss_dssp             CCCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTT-CEECTTEEECTTCEECC-----------
T ss_pred             eccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEe-EEECCCCEECCCCEEcccc---------
Confidence            344555556666666666677777777777777777777777777777665 8999999999999998520         


Q ss_pred             ccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          134 NMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       134 ~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                         ...+..++.||++|+||+|++|  +    ++||++|+|++|++|.
T Consensus       250 ---~~~~~~~V~IGdnv~IGAnAtI--G----VtIGd~~iIGAGSVVt  288 (347)
T 3r5d_A          250 ---SGGGNIVISVGEGCLIGANAGI--G----IPLGDRNIVEAGLYIT  288 (347)
T ss_dssp             -------CCCCEECTTCEECTTCEE--C----SCBCTTCEECTTCEEC
T ss_pred             ---CCCCccceEECCCCEECCCCEE--e----eEECCCCEECCCCEEC
Confidence               1112337999999999999999  6    8899999999998885

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.71  E-value=2.6e-16  Score=118.01  Aligned_cols=124  Identities=19%  Similarity=0.193  Sum_probs=92.8

Q ss_pred             eEECCCcEECCC-cEEcc---CcEECCCcEECCCCEECC---CCEECCCcEECCCcEE----eceEECCCCEECCCcEEC
Q 030076           53 ACIDSTVLIEVG-AIVHS---KAVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVAL----SNCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        53 ~~i~~~~~i~~~-~~i~~---~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i----~~~~I~~~~~Ig~~~~i~  121 (183)
                      .++++++.|... +.|.+   .+.||++|.|++++.|..   .+.||++|.|++.+.+    .+++|+++|.|++++.|.
T Consensus        37 v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~  116 (215)
T 2wlg_A           37 VYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIR  116 (215)
T ss_dssp             EEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEE
T ss_pred             EEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEE
Confidence            455666666555 44544   378888888888888853   4899999999995555    578999999999999999


Q ss_pred             CCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          122 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +.+.+.+.... .........+++||++||||++++|.+|    ++||++|+|+++++|.
T Consensus       117 ~~~~h~~~~~~-~~~~~~~~~~v~Igd~v~IG~~~~I~~g----v~Ig~~~vIgagsvV~  171 (215)
T 2wlg_A          117 NTDMHPIYSLE-NGERINHGKDVIIGNHVWLGRNVTILKG----VCIPNNVVVGSHTVLY  171 (215)
T ss_dssp             SCCSSCEEETT-TCBBCCCCCCEEECTTCEECTTCEECTT----CEECSSCEECTTCEEC
T ss_pred             CCCCccccccc-ccccccCCCCeEECCCcEECCCCEECCC----CEECCCCEECCCCEEc
Confidence            75322222111 1112233458999999999999999998    9999999999999985

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.70  E-value=4.9e-16  Score=118.36  Aligned_cols=102  Identities=20%  Similarity=0.297  Sum_probs=72.5

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcE------ECCCcEECCCCEECCCCEECCCcEECCCcEEec---------eEE
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAV------LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN---------CII  108 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~------ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~---------~~I  108 (183)
                      .....+++++.|.+++.|++++.|++++.      ||++|.|+.++.|+++++||++|.|++++.+.+         ++|
T Consensus        89 ~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~I  168 (240)
T 3r8y_A           89 GIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIV  168 (240)
T ss_dssp             TCSSEECTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEE
T ss_pred             CCCCEECCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEE
Confidence            33455666666666666665555555554      555555555555555667777777777777765         889


Q ss_pred             CCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC
Q 030076          109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD  165 (183)
Q Consensus       109 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~  165 (183)
                      +++|+||.++.|.+                    ++.||+++.|++++++....++.
T Consensus       169 g~~~~IG~~~~I~~--------------------~~~Ig~~~~I~~gsvV~~~vp~~  205 (240)
T 3r8y_A          169 EDDVVIGANVVVLE--------------------GVTVGKGAVVAAGAVVTEDVPPY  205 (240)
T ss_dssp             CTTCEECTTCEECT--------------------TCEECTTCEECTTCEECSCBCTT
T ss_pred             CCCCEECCCCEECC--------------------CcEECCCCEECCCCEECCCcCCC
Confidence            99999999999976                    89999999999999998764433

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.70  E-value=2.6e-16  Score=122.20  Aligned_cols=107  Identities=21%  Similarity=0.236  Sum_probs=78.8

Q ss_pred             CcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEec-eEECCCCEECCCcEECCCCCceeeccCCccc
Q 030076           58 TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCIGQDGFGFFVDEHGNML  136 (183)
Q Consensus        58 ~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~  136 (183)
                      ++.|.+++.|.+++.|++++.|+++ .|..++.||++|.|++++.|.+ +.||++|.|++++.+...            .
T Consensus       104 g~~I~p~a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~------------~  170 (276)
T 3gos_A          104 GFRVVPPATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV------------L  170 (276)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCC------------C
T ss_pred             CcEECCCcEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCc------------c
Confidence            4555556666666666666666665 6666777777777777777755 788888888888888531            0


Q ss_pred             cCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          137 KKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       137 ~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +.....+++||++|+||++++|.+|    ++||++|+|+++++|+
T Consensus       171 ~~~~~~~v~IGd~v~IG~~a~I~~g----v~IG~~avIgagsvV~  211 (276)
T 3gos_A          171 EPLQANPTIIEDNCFVGARSEVVEG----VIVEEGSVISMGVFIG  211 (276)
T ss_dssp             SSTTSCCCEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             ccCCCCCeEECCCCEECCCCEECCC----CEECCCCEECCCCEEC
Confidence            1112237999999999999999988    8999999999998885

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.70  E-value=2.6e-17  Score=135.80  Aligned_cols=109  Identities=18%  Similarity=0.340  Sum_probs=52.4

Q ss_pred             hhhhhHHHhhhhhhcccchhhhhh-hhhcccCCCcEEccceEECCC----------cEECCCcEEcc----CcEECCCcE
Q 030076           14 KTYKQDFGRFCNLFSTKSDIESRQ-QFQKWHNGGGIFHQSACIDST----------VLIEVGAIVHS----KAVLGANVC   78 (183)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~i~~~----------~~i~~~~~i~~----~~~ig~~~~   78 (183)
                      .++|.+++++..++..+..++... ....+......+++++.|+++          +.|+++|.|.+    ++.||++|.
T Consensus       275 ~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~~~i~~~~Ig~~~~  354 (451)
T 1yp2_A          275 DGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSC  354 (451)
T ss_dssp             CSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCE
T ss_pred             CCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEEeCeEECCCCEEcceEEeccEECCCCE
Confidence            357888888888777766654332 111122222223333333333          33333333333    444455555


Q ss_pred             ECCCCEECCCCEECCC------------------cEECCCcEEeceEECCCCEECCCcEECC
Q 030076           79 IGSGTVVGPAVTIGQS------------------TNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        79 I~~~~~I~~~~~Ig~~------------------~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~  122 (183)
                      |++++.|.++++++++                  +.||+++.|.+++|+++|+||+++.|.+
T Consensus       355 Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~  416 (451)
T 1yp2_A          355 ISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIIN  416 (451)
T ss_dssp             ECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECC
T ss_pred             ECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeC
Confidence            5555555444333332                  5555555555555555555555555553

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.70  E-value=4.4e-16  Score=115.86  Aligned_cols=94  Identities=22%  Similarity=0.196  Sum_probs=75.8

Q ss_pred             ceEECCCcEECCCcEEccCcEECCCcEECCCCEECCC---CEECCCcEECCCcEE-------------------------
Q 030076           52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVAL-------------------------  103 (183)
Q Consensus        52 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i-------------------------  103 (183)
                      ++.|++++.|++++.|.+++.||++|.|++++.|...   ++||++|.|+++|.|                         
T Consensus        52 ~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~  131 (205)
T 3vbi_A           52 VISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVK  131 (205)
T ss_dssp             GEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSCCSTTSCGGGCCCE
T ss_pred             eeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCcccccccCcccccccceec
Confidence            3455555556666666666777888888888888443   799999999999999                         


Q ss_pred             -eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC
Q 030076          104 -SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD  165 (183)
Q Consensus       104 -~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~  165 (183)
                       .+++|+++|+||+++.|.+                    ++.||++|+|+++++|.++.++.
T Consensus       132 ~~~v~IG~~v~IG~~~~I~~--------------------gv~Ig~~~~Ig~gsvV~~~v~~~  174 (205)
T 3vbi_A          132 TGKVILKKHVIIGAHSIIFP--------------------NVVIGEGVAVGAMSMVKESLDDW  174 (205)
T ss_dssp             ECCEEECTTCEECTTCEECS--------------------SCEECTTCEECTTCEECSCBCTT
T ss_pred             cCCEEECCCCEECCCCEEcC--------------------CCEECCCCEEcCCCEECCccCCC
Confidence             4689999999999999998                    89999999999999998775433

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.69  E-value=9.5e-16  Score=118.39  Aligned_cols=79  Identities=27%  Similarity=0.381  Sum_probs=50.3

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEEC------------C
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIG------------D  110 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~------------~  110 (183)
                      +....|+|.+.|.+++.|++++.|+++++|++++.|++++.|.++++|+.++.||++|.|. ++.|+            .
T Consensus         5 g~~~~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~   84 (265)
T 4e6u_A            5 SNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEET   84 (265)
T ss_dssp             ---CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCC
T ss_pred             CCCCeECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCC
Confidence            3455666777777777777777777777777777777777776666666666666666663 45552            3


Q ss_pred             CCEECCCcEECC
Q 030076          111 SCIIHNGVCIGQ  122 (183)
Q Consensus       111 ~~~Ig~~~~i~~  122 (183)
                      ++.||+++.|++
T Consensus        85 ~~~IG~~~~Ig~   96 (265)
T 4e6u_A           85 WLEIGNNNLIRE   96 (265)
T ss_dssp             EEEECSSCEECT
T ss_pred             eEEECCCeEECC
Confidence            556666666664

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.69  E-value=1e-16  Score=124.72  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=76.2

Q ss_pred             ECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN  134 (183)
Q Consensus        55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~  134 (183)
                      +.+++.|++.++|.+++.|++++.|+++++|..++.++.+|.|...+.+ +++||++|.|++++.|..+.          
T Consensus       158 I~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~i-Gv~IGd~v~IgpGa~IgG~~----------  226 (332)
T 3fsy_A          158 VPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISA-GVVVGDGSDVGGGASIMGTL----------  226 (332)
T ss_dssp             CCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECT-TCEECTTCEECTTCEECSBC----------
T ss_pred             cCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceec-ceEECCCCEECCCCEEcCCC----------
Confidence            4445555555555556666666666666666666666666666555444 38899999999999997521          


Q ss_pred             cccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          135 MLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       135 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                        +..+..++.||++|+||+|++|  +    ++||++|+|++|++|.
T Consensus       227 --~~~~~~~V~IGDnv~IGanAtI--g----VtIGd~~iIGAGSVVt  265 (332)
T 3fsy_A          227 --SGGGTHVISIGKRCLLGANSGL--G----ISLGDDCVVEAGLYVT  265 (332)
T ss_dssp             --C---CCBCEECTTCEECTTCEE--C----SCBCSSCEECTTCEEC
T ss_pred             --CCCCccceEECCCCEECCCCEE--e----eEECCCCEECCCCEEC
Confidence              1122347999999999999999  6    8889999999988885

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.69  E-value=8.5e-16  Score=119.05  Aligned_cols=55  Identities=24%  Similarity=0.321  Sum_probs=22.6

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL  103 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i  103 (183)
                      |+|.++|.+++.|++++.|++++.|++++.||+++.|+++++|..++.||++|.|
T Consensus         4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I   58 (270)
T 1j2z_A            4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEI   58 (270)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEE
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEE
Confidence            3444444444444444444444444444444444444333344333333333333

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.69  E-value=2.5e-16  Score=130.78  Aligned_cols=107  Identities=21%  Similarity=0.270  Sum_probs=63.9

Q ss_pred             eEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccC
Q 030076           53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEH  132 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~  132 (183)
                      ..+++++.|++++.+.+++.||++|.|++++.| ..++||++|.|+++|.|.+++||++|.|++++.+.           
T Consensus       274 ~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~-----------  341 (496)
T 3c8v_A          274 AGSASGASVSGYAVIKGDTVIGENVLVSQRAYL-DNAWMGKGSNAQENCYIINSRLERNCVTAHGGKII-----------  341 (496)
T ss_dssp             --CCTTCEECTTSEEESSCEECTTCEECTTCEE-EEEEECTTCEECTTCEEEEEEEEESCEECTTCEEE-----------
T ss_pred             cccCCCcEECCCcEEeCCeEECCCCEECCCcEE-eceEecCCCEECCCceEeceEeCCCCEECCCcEEc-----------
Confidence            334444555555555555666666666666666 45566666666666666666666666666666665           


Q ss_pred             CccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          133 GNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       133 ~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                +++||++|+||++++|.++....++||++|+|+++++|.
T Consensus       342 ----------gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~  380 (496)
T 3c8v_A          342 ----------NAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIID  380 (496)
T ss_dssp             ----------SEEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEE
T ss_pred             ----------CceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEe
Confidence                      566666666666666665433335566666666665554

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.69  E-value=1.1e-15  Score=118.12  Aligned_cols=75  Identities=23%  Similarity=0.341  Sum_probs=53.6

Q ss_pred             EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-eceEEC-------------CCCE
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIG-------------DSCI  113 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-~~~~I~-------------~~~~  113 (183)
                      .|+|.++|++++.|++++.|+++++|++++.||+++.|.++++|..++.||++|.| .++.|+             ..+.
T Consensus         6 ~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~   85 (266)
T 3r0s_A            6 KIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVV   85 (266)
T ss_dssp             CBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEE
T ss_pred             ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEE
Confidence            36777777777777777777777777777777777777777777777777777777 345664             4666


Q ss_pred             ECCCcEECC
Q 030076          114 IHNGVCIGQ  122 (183)
Q Consensus       114 Ig~~~~i~~  122 (183)
                      ||+++.|++
T Consensus        86 IG~~~~Ig~   94 (266)
T 3r0s_A           86 IGKNATIRE   94 (266)
T ss_dssp             ECTTCEECT
T ss_pred             ECCCCEECC
Confidence            777777765

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.68  E-value=8.8e-16  Score=120.63  Aligned_cols=107  Identities=21%  Similarity=0.204  Sum_probs=68.7

Q ss_pred             CcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEec-eEECCCCEECCCcEECCCCCceeeccCCccc
Q 030076           58 TVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCIGQDGFGFFVDEHGNML  136 (183)
Q Consensus        58 ~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~  136 (183)
                      ++.|.+++.|.+++.|++++.|+++ +|..++.||++|.|..++.|.+ +.|+++|.|++++.+....            
T Consensus       129 g~~I~p~a~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~------------  195 (304)
T 3eg4_A          129 GFRAVPNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVL------------  195 (304)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCC------------
T ss_pred             CcEEcCCEEECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCcc------------
Confidence            3444444444444555555555444 4445555566666655555533 5666666666666665421            


Q ss_pred             cCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          137 KKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       137 ~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ...+..+++||++|+||++++|.++    ++||++|+|+++++|+
T Consensus       196 ~~~~~~~v~IGd~v~IG~~a~I~~g----v~IG~~avIgagsvV~  236 (304)
T 3eg4_A          196 EPMQAGPTIIEDNCFIGARSEVVEG----CIVREGSVLGMGVFIG  236 (304)
T ss_dssp             SSTTCCCCEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             ccCccCCeEEcCCCEECCCCEEcCC----cEECCCcEECCCCEEc
Confidence            1112347999999999999999988    8888888888888885

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.67  E-value=3e-16  Score=123.32  Aligned_cols=100  Identities=26%  Similarity=0.309  Sum_probs=68.3

Q ss_pred             CCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-----eceEECCCCEECCCcE
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVC  119 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-----~~~~I~~~~~Ig~~~~  119 (183)
                      .+..|++++.|++++.|+.    +.+++||+++.||++|.|..+++|++++.+++++.+     .+++||++|+||+++.
T Consensus       162 ~gv~I~p~a~IG~~v~I~~----g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~  237 (313)
T 3q1x_A          162 TSIDIHPGASIKGHFFIDH----GVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAK  237 (313)
T ss_dssp             HCCEECTTCEECSSCEESS----CTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCE
T ss_pred             CCeEECCCCEECCCEEECC----CCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCE
Confidence            3445555555555555532    234555555555566666555566665555555555     3469999999999999


Q ss_pred             ECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEE
Q 030076          120 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVI  168 (183)
Q Consensus       120 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~I  168 (183)
                      |.+                    +++||++|+||+|++|.+++..++++
T Consensus       238 Ilg--------------------gv~IG~~a~IGagsvV~~dVp~gs~v  266 (313)
T 3q1x_A          238 VLG--------------------NIIVGSHVRIGANCWIDRDVDSNQTV  266 (313)
T ss_dssp             EES--------------------SCEECSSEEECTTCEECSCBCSSEEC
T ss_pred             ECC--------------------CcEECCCCEECCCCEECCCcCCCCEE
Confidence            987                    89999999999999999886444443

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.67  E-value=6.1e-16  Score=121.98  Aligned_cols=102  Identities=24%  Similarity=0.216  Sum_probs=66.4

Q ss_pred             CcEEccCcEECCCcEECCCCE-----ECCCCEECCCcEECCCcEE-eceEECCCCEECCCcEECCCCCceeeccCCcccc
Q 030076           64 GAIVHSKAVLGANVCIGSGTV-----VGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK  137 (183)
Q Consensus        64 ~~~i~~~~~ig~~~~I~~~~~-----I~~~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~  137 (183)
                      ++.|.+++.|++++.|++++.     |..++.||++|.|..++.| .++.||++|.|++++.|....+            
T Consensus       145 ~~~I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~------------  212 (316)
T 3tk8_A          145 GFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLE------------  212 (316)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCS------------
T ss_pred             CcEEeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcc------------
Confidence            444444444444444444444     4445555666666655555 3356666666666666654211            


Q ss_pred             CCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          138 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       138 ~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ..+..+++||++|+||++++|.+|    ++||++++|+++++|+
T Consensus       213 ~~~~~~v~IGd~v~IG~~a~I~~g----v~IG~g~vIgagsvV~  252 (316)
T 3tk8_A          213 PLQANPVIIEDNCFIGARSEVVEG----VIVEENSVISMGVYLG  252 (316)
T ss_dssp             STTSCCCEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             cccCCCcEECCCCEECCCCEEcCC----CEECCCCEEcCCCEEc
Confidence            112337999999999999999988    8999999999998886

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.65  E-value=3e-15  Score=118.88  Aligned_cols=132  Identities=16%  Similarity=0.181  Sum_probs=93.0

Q ss_pred             CCCcEEcc-ceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076           44 NGGGIFHQ-SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        44 ~~~~~i~~-~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~  122 (183)
                      ....++.+ ++.+++++.|++++.|++++.|+++|.|+++|.|+ +++|++++.|++++.|.+++|+++|.|..++.+.+
T Consensus        56 ~~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~  134 (334)
T 2pig_A           56 QGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLN  134 (334)
T ss_dssp             SSSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEE-SCEEESSCEECTTCEEESCEEESSEEECTTCEEES
T ss_pred             CCceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeC
Confidence            34457777 78888888888888888889999999999999997 77999999999999998888888888877777765


Q ss_pred             CCCc-----eee-ccCCccc-cCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          123 DGFG-----FFV-DEHGNML-KKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       123 ~~~~-----~~~-~~~~~~~-~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .-+-     ++. ..++... .......+.|+++|.|+++++|. +    ++|++++.|++++.|.
T Consensus       135 ~s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~-~----svI~~~a~I~~~a~V~  195 (334)
T 2pig_A          135 QSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATIT-H----AFIEHRAEVFDFALIE  195 (334)
T ss_dssp             SCEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEE-S----EEECTTCEECTTCEEE
T ss_pred             CEEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEe-C----cEEcCCCEECCCcEEC
Confidence            3210     000 0111111 22344567777777777777776 5    6666666666666653

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.65  E-value=5.3e-16  Score=114.75  Aligned_cols=35  Identities=31%  Similarity=0.398  Sum_probs=26.0

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++||++||||++++|.+|    ++||++++|+++++|.
T Consensus       132 ~v~IG~~v~IG~~~~I~~g----v~IG~~~vIgagsvV~  166 (195)
T 3nz2_A          132 PIVIEDDVWIGGNVVINQG----VTIGARSVVAANSVVN  166 (195)
T ss_dssp             CEEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             CeEECCCCEEcCCCEECCC----CEECCCCEECCCCEEc
Confidence            6777777777777777776    7777777777777764

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.63  E-value=4.6e-15  Score=109.06  Aligned_cols=101  Identities=23%  Similarity=0.362  Sum_probs=60.3

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECC--CCEECCCcEECCCcEE-------------------eceE
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP--AVTIGQSTNIGFNVAL-------------------SNCI  107 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~--~~~Ig~~~~Ig~~~~i-------------------~~~~  107 (183)
                      ++++++|.+++.+..+    .++.||+++.|+.++.|.+  .++||++|.|+++|.|                   .+++
T Consensus        59 ig~~~~I~~~~~~~~g----~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~  134 (188)
T 3srt_A           59 VGKQINVEQNIRCDYG----YNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVK  134 (188)
T ss_dssp             CCSCEEECSCEEESSS----TTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEE
T ss_pred             cCCCCEEcCCEEEEeC----CCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcE
Confidence            5555666666655322    3445555555555555533  3367777777777776                   3466


Q ss_pred             ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCC-CCeEECCCCE
Q 030076          108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW-RDTVIGDHSK  173 (183)
Q Consensus       108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~-~~~~Ig~~~~  173 (183)
                      ||++|+||+++.|.+                    +++||++++|+++++|.+..+ ..+++|..|.
T Consensus       135 IG~~v~IG~~~~I~~--------------------gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~  181 (188)
T 3srt_A          135 IGDNVWIGGGVIITP--------------------GITIGDNVVIGAGSVVTKDIPPNTVAVGNPCR  181 (188)
T ss_dssp             ECSSCEECTTCEECT--------------------TCEECSSEEECTTCEECSCBCSSEEEETTTTE
T ss_pred             ECCCcEEcCCCEECC--------------------CcEECCCCEECCCCEECcccCCCCEEEccCCE
Confidence            777777777777765                    677777777777777766542 2234444443

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.62  E-value=2.3e-15  Score=110.84  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=25.4

Q ss_pred             ceEECCCcEECCCcEEccCcEECCCcEECCCCEECC--CCEECCCcEECCCcEE
Q 030076           52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP--AVTIGQSTNIGFNVAL  103 (183)
Q Consensus        52 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~--~~~Ig~~~~Ig~~~~i  103 (183)
                      +++|.+++.+.-    +.++.||+++.|++++.|.+  .++||++|.|++++.|
T Consensus        64 ~~~I~~~~~~~~----g~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I  113 (190)
T 3hjj_A           64 KAQINPDFRCDY----GYNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHI  113 (190)
T ss_dssp             CCEECSSCEESS----STTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEE
T ss_pred             CcEECCCEEEEe----CCceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEE
Confidence            455555444421    23455555555555555543  3466666666666666

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.62  E-value=1e-14  Score=118.48  Aligned_cols=118  Identities=22%  Similarity=0.282  Sum_probs=78.0

Q ss_pred             cEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEec-eEECCCCEECCCcEECCCCC
Q 030076           47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCIGQDGF  125 (183)
Q Consensus        47 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i~~~~~  125 (183)
                      ..+++.+.+.+++.|++++.|++++.|.+++.||+++.|+.+++|+.++.||++|.|.. +.| .++.|++++.|++   
T Consensus       233 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i-~~~~i~~~~~i~~---  308 (401)
T 2ggo_A          233 GNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEV-KESVIMEGSKIPH---  308 (401)
T ss_dssp             SEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEE-ESEEECTTCEEEE---
T ss_pred             ceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEE-ecCEEcCCcEECC---
Confidence            45677777777777888888888888877888888888877778877788888877742 333 3333333333332   


Q ss_pred             ceeeccCCccccCCceeceEECCCCEECCCcEEcCCC--------------------CCCeEECCCCEECCCCeE
Q 030076          126 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS--------------------WRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~--------------------~~~~~Ig~~~~I~~~~~v  180 (183)
                                  .+...+++||++++|++++.+....                    ..+++||+++.|+++++|
T Consensus       309 ------------~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I  371 (401)
T 2ggo_A          309 ------------LSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTI  371 (401)
T ss_dssp             ------------SCEEESCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEE
T ss_pred             ------------CceEcceEECCCcEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEE
Confidence                        1122278899999999998886210                    123666666666666665

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.61  E-value=5e-15  Score=115.23  Aligned_cols=98  Identities=14%  Similarity=0.261  Sum_probs=85.5

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECC----CCEECCCcEECCCcEEec---------eEE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSN---------CII  108 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~----~~~Ig~~~~Ig~~~~i~~---------~~I  108 (183)
                      .+..+..|+|.+.|.+++.|++++.|+++++|..++.++.+|.|..    +++||++|.|++++.|..         ++|
T Consensus       157 vI~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~I  236 (332)
T 3fsy_A          157 VVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISI  236 (332)
T ss_dssp             CCCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---CCBCEE
T ss_pred             ecCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCccceEE
Confidence            4567788999999999999999999999888888888888888754    379999999999999954         899


Q ss_pred             CCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       109 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      |++|+||.+++|                      ++.||++|.||+|++|.++
T Consensus       237 GDnv~IGanAtI----------------------gVtIGd~~iIGAGSVVtkd  267 (332)
T 3fsy_A          237 GKRCLLGANSGL----------------------GISLGDDCVVEAGLYVTAG  267 (332)
T ss_dssp             CTTCEECTTCEE----------------------CSCBCSSCEECTTCEECTT
T ss_pred             CCCCEECCCCEE----------------------eeEECCCCEECCCCEECCC
Confidence            999999999999                      3779999999999999887

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.60  E-value=3e-14  Score=105.59  Aligned_cols=90  Identities=22%  Similarity=0.258  Sum_probs=47.5

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC--CCCEECCCcEECCCcEEe-------------------ceE
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVALS-------------------NCI  107 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i~-------------------~~~  107 (183)
                      ++++++|.++..+.-    +.++.||+++.|++++.|.  ..++||++|.|+++|.|.                   +++
T Consensus        57 ~g~~~~i~~~~~~~~----g~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~  132 (199)
T 3ftt_A           57 TTDNVSISIPFDTDY----GWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIH  132 (199)
T ss_dssp             CCSSEEECSSEEESS----STTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEE
T ss_pred             cCCCeEEeCCEEEEe----cCCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeE
Confidence            445555555555421    1234444444444444442  224666666666666652                   234


Q ss_pred             ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076          108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (183)
Q Consensus       108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~  162 (183)
                      ||++|+||.++.|.+                    ++.||++++|+++++|.+.+
T Consensus       133 IG~~v~IG~~~~I~~--------------------gv~IG~~~vIgagsvV~~dv  167 (199)
T 3ftt_A          133 IGSNTWFGGHVAVLP--------------------GVTIGEGSVIGAGSVVTKDI  167 (199)
T ss_dssp             ECSSEEECTTCEECT--------------------TCEECTTCEECTTCEECSCB
T ss_pred             EcCCcEEcCCCEECC--------------------CCEECCCCEECCCCEECccc
Confidence            666666666666655                    55666666666666665543

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.60  E-value=5.6e-15  Score=115.74  Aligned_cols=98  Identities=17%  Similarity=0.268  Sum_probs=82.6

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECC----CCEECCCcEECCCcEEec---------eEE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSN---------CII  108 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~----~~~Ig~~~~Ig~~~~i~~---------~~I  108 (183)
                      .++.+..|+|.+.|.+++.|++++.|.+++.|..++.|+++|.|..    +++||++|.|+++|.|..         ++|
T Consensus       180 vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~I  259 (347)
T 3r5d_A          180 VVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISV  259 (347)
T ss_dssp             CCCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------CCCCEE
T ss_pred             eccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEE
Confidence            4466788888888888888888888888888888888888887754    379999999999999954         799


Q ss_pred             CCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       109 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      |++|+||+++.|                      ++.||++|.||+|++|.++
T Consensus       260 Gdnv~IGAnAtI----------------------GVtIGd~~iIGAGSVVtkd  290 (347)
T 3r5d_A          260 GEGCLIGANAGI----------------------GIPLGDRNIVEAGLYITAG  290 (347)
T ss_dssp             CTTCEECTTCEE----------------------CSCBCTTCEECTTCEECTT
T ss_pred             CCCCEECCCCEE----------------------eeEECCCCEECCCCEECCC
Confidence            999999999999                      3778999999999999877

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.60  E-value=4.5e-15  Score=115.12  Aligned_cols=50  Identities=26%  Similarity=0.270  Sum_probs=40.0

Q ss_pred             ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCC-CCeEECCCCEE
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW-RDTVIGDHSKI  174 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~-~~~~Ig~~~~I  174 (183)
                      +++|+++|+||+++.|.+                    +++||++++||++++|.+.++ ..+++|..+.+
T Consensus       216 ~~~IGd~v~IGaga~Il~--------------------gv~IG~~a~IGagsvV~kdVp~~svvvG~PAki  266 (287)
T 3mc4_A          216 HPKIRQGVLIGAGAKILG--------------------NIQVGQCSKIAAGSVVLKSVPHNVTVAGVPARI  266 (287)
T ss_dssp             SCEECTTCEECTTCEEES--------------------SCEECTTCEECTTCEECSCBCTTEEEETTTTEE
T ss_pred             CCEECCCCEECCCCEECC--------------------CcEECCCCEECCCCEEccccCCCCEEEccCCEE
Confidence            478999999999999987                    899999999999999987763 33555555543

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.59  E-value=1.1e-14  Score=121.79  Aligned_cols=123  Identities=18%  Similarity=0.257  Sum_probs=79.3

Q ss_pred             cCCCcEEccceEECCCcEECCCcEEccCcE---------------------ECCCcEECCCCEECCCCEECCCcEECCCc
Q 030076           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAV---------------------LGANVCIGSGTVVGPAVTIGQSTNIGFNV  101 (183)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~---------------------ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~  101 (183)
                      ++....|.+++++.+.+.++.++.+++++.                     +++++.+++++.+++++.|++++.||..+
T Consensus       286 IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v  365 (501)
T 3st8_A          286 IGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFV  365 (501)
T ss_dssp             ECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETE
T ss_pred             ECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeE
Confidence            445566777777776666666666555442                     34555555555555555666655555555


Q ss_pred             EEeceEECC-----------------CCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCC
Q 030076          102 ALSNCIIGD-----------------SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR  164 (183)
Q Consensus       102 ~i~~~~I~~-----------------~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~  164 (183)
                      .+.+++|++                 +|.||+++.+-+    +         .......++||++|+||.++.+.++   
T Consensus       366 ~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n----~---------dg~~~~~t~IGd~~~iG~~~~l~~~---  429 (501)
T 3st8_A          366 EVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVN----Y---------DGTSKRRTTVGSHVRTGSDTMFVAP---  429 (501)
T ss_dssp             EEESCEECTTCEEEESCEEESEEECSSCEECTTCEEEC----B---------CSSSBCCEEECTTCEECTTCEEESS---
T ss_pred             EEccceecCCcEEeccceecCceEcCCCEECCCEEEEc----c---------cCCcccCCEECCCcEECCCCEEcCC---
Confidence            555554444                 444444444322    0         0112236999999999999999988   


Q ss_pred             CeEECCCCEECCCCeEee
Q 030076          165 DTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       165 ~~~Ig~~~~I~~~~~v~~  182 (183)
                       ++||++|.|+++|+|.+
T Consensus       430 -v~Ig~~~~i~ags~v~~  446 (501)
T 3st8_A          430 -VTIGDGAYTGAGTVVRE  446 (501)
T ss_dssp             -EEECTTCEECTTCEECS
T ss_pred             -cEECCCCEECCCCEECc
Confidence             99999999999999853

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.59  E-value=8e-15  Score=121.72  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=85.6

Q ss_pred             cCCCcEEccceEECCCcEECCCcEEccC-----cEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCC
Q 030076           43 HNGGGIFHQSACIDSTVLIEVGAIVHSK-----AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNG  117 (183)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~-----~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~  117 (183)
                      +..+..+.+.+.+.+++.|++++.|+++     +.||++|.|+++|.|. +++||++|.|++++.|.+++||++|+||++
T Consensus       276 I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~-~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~  354 (496)
T 3c8v_A          276 SASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYII-NSRLERNCVTAHGGKIINAHLGDMIFTGFN  354 (496)
T ss_dssp             CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEE-EEEEEESCEECTTCEEESEEEEETCEECTT
T ss_pred             cCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEe-ceEeCCCCEECCCcEEcCceECCCcEECCC
Confidence            3445566666655555555555555554     4566777777777775 568899999999999999999999999999


Q ss_pred             cEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEc--CCCCCCeEECCCCEEC
Q 030076          118 VCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCID--RGSWRDTVIGDHSKID  175 (183)
Q Consensus       118 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~--~g~~~~~~Ig~~~~I~  175 (183)
                      +.|.++.                ...+.||++|+||++++|.  .+    ..|++++++.
T Consensus       355 a~I~~~~----------------~~~v~IG~~a~IGagsvV~~~~~----~~I~~~s~v~  394 (496)
T 3c8v_A          355 SFLQGSE----------------SSPLKIGDGCVVMPHTIIDLEEP----LEIPAGHLVW  394 (496)
T ss_dssp             CEEECCS----------------SSCEEECTTCEECTTCEEECSSC----EEECSSEEEC
T ss_pred             CEEeCCC----------------CcceEECCCCEECCCCEEecCCC----cEeCCCCEEE
Confidence            9998610                0028999999999999999  77    8889988887

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.59  E-value=1.8e-14  Score=106.46  Aligned_cols=101  Identities=23%  Similarity=0.332  Sum_probs=65.6

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEEC--CCCEECCCcEECCCcEEe-------------------ceE
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVALS-------------------NCI  107 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i~-------------------~~~  107 (183)
                      ++++++|.++..    +.++.++.||+++.|++++.|.  ..++||++|.|+++|.|.                   +++
T Consensus        59 ig~~~~I~~p~~----~~ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~  134 (195)
T 3nz2_A           59 LGHKSCVQPPFH----CEFGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIV  134 (195)
T ss_dssp             ECTTCEECSSEE----ESCSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEE
T ss_pred             cCCCcEEcCCeE----EEeCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeE
Confidence            555555555332    1223334444444444444442  223667777777777653                   468


Q ss_pred             ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC-eEECCCCE
Q 030076          108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD-TVIGDHSK  173 (183)
Q Consensus       108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~-~~Ig~~~~  173 (183)
                      ||++|+||.++.|.+                    ++.||++++|+++++|.+..+++ ++.|..+.
T Consensus       135 IG~~v~IG~~~~I~~--------------------gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~  181 (195)
T 3nz2_A          135 IEDDVWIGGNVVINQ--------------------GVTIGARSVVAANSVVNQDVPPDTLVGGTPAR  181 (195)
T ss_dssp             ECTTCEECTTCEECT--------------------TCEECTTCEECTTCEECSCBCSSEEEETTTTE
T ss_pred             ECCCCEEcCCCEECC--------------------CCEECCCCEECCCCEEccccCCCcEEEccCCE
Confidence            999999999999988                    89999999999999999876433 34454443

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.58  E-value=8.8e-15  Score=108.47  Aligned_cols=69  Identities=20%  Similarity=0.174  Sum_probs=51.5

Q ss_pred             eEECCCCEECCCcEECCCCCc--eeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          106 CIIGDSCIIHNGVCIGQDGFG--FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       106 ~~I~~~~~Ig~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      ++||++|.|++++.|....+.  +.....    ......+++||++||||++++|.+|    ++||++|+|+++++|.+
T Consensus        95 v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~----~~~~~~~v~IG~~v~IG~~~~I~~g----v~IG~~~vIgagsvV~~  165 (199)
T 3ftt_A           95 ITIGDNVFIGPNCGFYTATHPLNFHHRNE----GFEKAGPIHIGSNTWFGGHVAVLPG----VTIGEGSVIGAGSVVTK  165 (199)
T ss_dssp             EEECSSEEECTTCEEECEECCSSHHHHHT----TEEEECCEEECSSEEECTTCEECTT----CEECTTCEECTTCEECS
T ss_pred             EEECCCCEECCCCEEecCCCcCccccccc----cceecCCeEEcCCcEEcCCCEECCC----CEECCCCEECCCCEECc
Confidence            489999999999999753110  000000    0111348899999999999999999    99999999999999854

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.58  E-value=2.4e-14  Score=109.83  Aligned_cols=87  Identities=26%  Similarity=0.334  Sum_probs=71.8

Q ss_pred             cEECCCcEEcc--------CcEECCCcEECCCCEECC---CCEECCCcEECCCcEEec--------------------eE
Q 030076           59 VLIEVGAIVHS--------KAVLGANVCIGSGTVVGP---AVTIGQSTNIGFNVALSN--------------------CI  107 (183)
Q Consensus        59 ~~i~~~~~i~~--------~~~ig~~~~I~~~~~I~~---~~~Ig~~~~Ig~~~~i~~--------------------~~  107 (183)
                      +.|++++.|.+        ++.||+++.|++++.|..   .++||++|.|+++|.|.+                    ++
T Consensus        86 v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~  165 (252)
T 3jqy_B           86 VRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDII  165 (252)
T ss_dssp             EEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEE
T ss_pred             EEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeE
Confidence            34555555554        567788888888888865   789999999999999966                    48


Q ss_pred             ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC
Q 030076          108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD  165 (183)
Q Consensus       108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~  165 (183)
                      |+++|+||+++.|.+                    ++.||++++|+++++|.+.+++.
T Consensus       166 Igd~v~IG~~a~I~~--------------------gv~IG~~~~IgagsvV~~~vp~~  203 (252)
T 3jqy_B          166 ISSYVWVGRNVSIMK--------------------GVSVGSGSVIGYGSIVTKDVPSM  203 (252)
T ss_dssp             ECSSCEECSSEEECT--------------------TCEECTTCEECTTCEECSCBCTT
T ss_pred             EecCcEECCCCEECC--------------------CCEECCCCEECCCCEECcccCCC
Confidence            999999999999998                    99999999999999998775443

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.58  E-value=3.4e-15  Score=122.20  Aligned_cols=124  Identities=15%  Similarity=0.107  Sum_probs=96.5

Q ss_pred             hhhhhHHHhhhhhhcccchhhhhhhhhcccCCCcEEccceEECCCcEECC-----CcEEccCcEECCCcEECCCCEECCC
Q 030076           14 KTYKQDFGRFCNLFSTKSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEV-----GAIVHSKAVLGANVCIGSGTVVGPA   88 (183)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-----~~~i~~~~~ig~~~~I~~~~~I~~~   88 (183)
                      .++|.+++++..++.++..++.......+......+...+.+.+++.+++     ++.+ .++.||++|.| +++.|. +
T Consensus       264 ~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~i-~~~~ig~~~~I-~~~~i~-~  340 (420)
T 3brk_X          264 EPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSA-VSSVVSGDCII-SGAALN-R  340 (420)
T ss_dssp             SCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCCCEEECBCSSCBCEE-ESCEECSSCEE-ESCEEE-S
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCCcEEecccccCCcEe-cCCEECCCCEE-cCCEEe-C
Confidence            45788888888888777766544322223333334555566666776665     6666 68888888888 888885 5


Q ss_pred             CEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076           89 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus        89 ~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      ++||++|.|+++|.|.+++|+++|.|++++.|.                     +++||+++.|++++++...
T Consensus       341 ~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~---------------------~~~ig~~~~i~~~~~i~~~  392 (420)
T 3brk_X          341 SLLFTGVRANSYSRLENAVVLPSVKIGRHAQLS---------------------NVVIDHGVVIPEGLIVGED  392 (420)
T ss_dssp             CEECTTCEECTTCEEEEEEECTTCEECTTCEEE---------------------EEEECTTCEECTTCEESSC
T ss_pred             cEEcCCCEECCCCEEcceEEcCCCEECCCCEEe---------------------ceEECCCCEECCCCEEeCC
Confidence            799999999999999999999999999999998                     7999999999999999865

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.57  E-value=7.3e-14  Score=102.77  Aligned_cols=35  Identities=34%  Similarity=0.526  Sum_probs=22.1

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++||++||||++++|.+|    ++||++++|+++++|.
T Consensus       134 ~v~IG~~v~IG~~~~I~~g----v~IG~~~vIgagsvV~  168 (190)
T 3hjj_A          134 PVKIGNNVWVGGGAIINPG----VSIGDNAVIASGAVVT  168 (190)
T ss_dssp             CEEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             CeEECCCCEECCCCEECCC----CEECCCCEECCCCEEC
Confidence            4566666666666666665    6666666666666653

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.56  E-value=7.2e-14  Score=116.79  Aligned_cols=127  Identities=20%  Similarity=0.271  Sum_probs=72.3

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCC---------------EECCCcEECCCcEEe-ceEECCCC
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV---------------TIGQSTNIGFNVALS-NCIIGDSC  112 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~---------------~Ig~~~~Ig~~~~i~-~~~I~~~~  112 (183)
                      +.+.+.|++++.|+.++.+.+++.++.+|.+++++.+.+.+               .+++++.+++.+.+. +++|++++
T Consensus       280 i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v  359 (501)
T 3st8_A          280 IDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADG  359 (501)
T ss_dssp             ECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTC
T ss_pred             ccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEcccc
Confidence            34444555555555555555555555555555555543221               233444444444442 34444444


Q ss_pred             EECCCcEECCCCCceeeccCCcc-ccCCceeceEECCCCEECCCcEEc--CCC-CCCeEECCCCEECCCCeE
Q 030076          113 IIHNGVCIGQDGFGFFVDEHGNM-LKKPQLLNARIGNHVEIGANSCID--RGS-WRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       113 ~Ig~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~Ig~~~~Ig~~~~v~--~g~-~~~~~Ig~~~~I~~~~~v  180 (183)
                      .||.++.+.+     ....++++ .+.+..+++.||++|.||+|+++.  .|. .+.|+||+++.||.++.+
T Consensus       360 ~IG~~v~ik~-----s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l  426 (501)
T 3st8_A          360 KLGAFVEVKN-----STIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMF  426 (501)
T ss_dssp             EEEETEEEES-----CEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEE
T ss_pred             ccCCeEEEcc-----ceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEE
Confidence            4444444432     11122232 245677789999999999999873  344 566999999999888876

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.56  E-value=1.7e-14  Score=113.10  Aligned_cols=39  Identities=21%  Similarity=0.324  Sum_probs=32.9

Q ss_pred             eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC
Q 030076          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS  162 (183)
Q Consensus       104 ~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~  162 (183)
                      .+++||++|+||+++.|.+                    ++.||++++||+|++|.+++
T Consensus       250 ~~~~IGd~V~IGaga~Il~--------------------gv~IGd~a~IGagsvV~~dV  288 (310)
T 3f1x_A          250 RHPILEDDVIVYSNATILG--------------------RVTIGKGATVGGNIWVTENV  288 (310)
T ss_dssp             CSCEECTTCEECTTCEEES--------------------SCEECTTCEECSSCEECSCB
T ss_pred             CCCEECCCcEEcCCCEECC--------------------CcEECCCCEECCCCEECCcc
Confidence            3458999999999999886                    88999999999999998775

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.56  E-value=2.5e-14  Score=105.15  Aligned_cols=86  Identities=21%  Similarity=0.198  Sum_probs=58.2

Q ss_pred             EECCCcEECCCcEEe---ceEECCCCEECCCcEECCCCCceeeccCCccccCC-ceeceEECCCCEECCCcEEcCCCCCC
Q 030076           90 TIGQSTNIGFNVALS---NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKP-QLLNARIGNHVEIGANSCIDRGSWRD  165 (183)
Q Consensus        90 ~Ig~~~~Ig~~~~i~---~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~Ig~~~~Ig~~~~v~~g~~~~  165 (183)
                      .||+++.|+.+|.|.   .+.||++|.|++++.|....+..   ......... ...+++||++||||++++|.+|    
T Consensus        78 ~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~---~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g----  150 (188)
T 3srt_A           78 HVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPI---DAQLRNSGIEYGSPVKIGDNVWIGGGVIITPG----  150 (188)
T ss_dssp             EECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCS---SHHHHHTTEEEECCEEECSSCEECTTCEECTT----
T ss_pred             EECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccC---chhhccccceECCCcEECCCcEEcCCCEECCC----
Confidence            444444444444442   34799999999999996531100   000000111 1238999999999999999998    


Q ss_pred             eEECCCCEECCCCeEee
Q 030076          166 TVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       166 ~~Ig~~~~I~~~~~v~~  182 (183)
                      ++||++++|+++++|.+
T Consensus       151 v~IG~~~vIgagsvV~~  167 (188)
T 3srt_A          151 ITIGDNVVIGAGSVVTK  167 (188)
T ss_dssp             CEECSSEEECTTCEECS
T ss_pred             cEECCCCEECCCCEECc
Confidence            99999999999999854

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.55  E-value=1.7e-14  Score=113.39  Aligned_cols=95  Identities=22%  Similarity=0.349  Sum_probs=62.0

Q ss_pred             CCCcEEccCcEECCCcEE--CCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCC
Q 030076           62 EVGAIVHSKAVLGANVCI--GSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKP  139 (183)
Q Consensus        62 ~~~~~i~~~~~ig~~~~I--~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~  139 (183)
                      ..++.|++++.||+++.|  +.+++|+++++||++|.|++++.     |++++.+++++.+....               
T Consensus       161 ~~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vt-----IG~~~~ig~~~~i~~~~---------------  220 (313)
T 3q1x_A          161 YTSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVT-----LGAMHFQEEGGVIKRGT---------------  220 (313)
T ss_dssp             HHCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCE-----EECCCCCCTTCCCCCCS---------------
T ss_pred             cCCeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcE-----EeCCcEECCCceEcCCC---------------
Confidence            345555555566666666  33455555555555555555544     44444444444444210               


Q ss_pred             ceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          140 QLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       140 ~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                       ...++||++|+||++++|.++    ++||++|+|+++++|.
T Consensus       221 -~~~~~IGd~v~IGaga~Ilgg----v~IG~~a~IGagsvV~  257 (313)
T 3q1x_A          221 -KRHPTVGDYVTIGTGAKVLGN----IIVGSHVRIGANCWID  257 (313)
T ss_dssp             -SCSCEECSSCEECTTCEEESS----CEECSSEEECTTCEEC
T ss_pred             -ccCCEECCCCEECCCCEECCC----cEECCCCEECCCCEEC
Confidence             015699999999999999988    9999999999999984

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.54  E-value=7.2e-15  Score=110.55  Aligned_cols=39  Identities=33%  Similarity=0.296  Sum_probs=34.1

Q ss_pred             ceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          140 QLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       140 ~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      ..++++||++||||++++|.+|    ++||++|+|+++++|.+
T Consensus       116 ~~g~v~IG~~v~IG~~a~I~~g----v~IG~gavIgagsvV~~  154 (220)
T 4hur_A          116 LKGDIEIGNDVWIGRDVTIMPG----VKIGDGAIIAAEAVVTK  154 (220)
T ss_dssp             CCCCEEECSSCEECTTCEECTT----CEECTTCEECTTCEECS
T ss_pred             ccCCeEECCCcEECCCCEEeCC----CEECCCCEEcCCCEEcc
Confidence            3468999999999999999988    99999999999999853

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.54  E-value=3.8e-14  Score=105.27  Aligned_cols=35  Identities=40%  Similarity=0.500  Sum_probs=24.4

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      +++||++||||++++|.+|    ++||++|+|+++++|.
T Consensus       131 ~v~IGd~v~IG~~a~I~~g----v~IG~~~vIgagsvV~  165 (203)
T 1krr_A          131 PITIGNNVWIGSHVVINPG----VTIGDNSVIGAGSIVT  165 (203)
T ss_dssp             CEEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             CcEECCCeEECCCCEEeCC----eEECCCCEECCCCEEC
Confidence            5677777777777777766    7777777777777664

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.54  E-value=5.5e-14  Score=105.71  Aligned_cols=79  Identities=23%  Similarity=0.298  Sum_probs=58.8

Q ss_pred             CCcEECCCCEECCCCEECCCcEECCCcEE------------------------------------eceEECCCCEECCCc
Q 030076           75 ANVCIGSGTVVGPAVTIGQSTNIGFNVAL------------------------------------SNCIIGDSCIIHNGV  118 (183)
Q Consensus        75 ~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i------------------------------------~~~~I~~~~~Ig~~~  118 (183)
                      +++.|++++.|+++++||++|.|++++.|                                    .+++||++|+||.++
T Consensus        53 ~~~vI~~~~~Ig~~v~IG~~~~Ig~~v~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a  132 (220)
T 4hur_A           53 EDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDV  132 (220)
T ss_dssp             GGGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTC
T ss_pred             CCeEEeCCCEECCCeEECCCCEECCCCEEEECCCCcccCCcceeeeeecccccccccccccccccCCeEECCCcEECCCC
Confidence            35666666666666666666666666664                                    357899999999999


Q ss_pred             EECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC-eEECCCCE
Q 030076          119 CIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD-TVIGDHSK  173 (183)
Q Consensus       119 ~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~-~~Ig~~~~  173 (183)
                      .|.+                    ++.||++++||++++|.+.+++. ++.|..+.
T Consensus       133 ~I~~--------------------gv~IG~gavIgagsvV~~dVp~~~vv~G~PAk  168 (220)
T 4hur_A          133 TIMP--------------------GVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLK  168 (220)
T ss_dssp             EECT--------------------TCEECTTCEECTTCEECSCBCTTEEEETTTTE
T ss_pred             EEeC--------------------CCEECCCCEEcCCCEEcccCCCCcEEeCCCCE
Confidence            9998                    89999999999999999876443 33444443

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.53  E-value=3.6e-13  Score=98.66  Aligned_cols=72  Identities=22%  Similarity=0.341  Sum_probs=41.1

Q ss_pred             CcEECCCcEECCCCEEC--CCCEECCCcEECCCcEEe-------------------ceEECCCCEECCCcEECCCCCcee
Q 030076           70 KAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVALS-------------------NCIIGDSCIIHNGVCIGQDGFGFF  128 (183)
Q Consensus        70 ~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i~-------------------~~~I~~~~~Ig~~~~i~~~~~~~~  128 (183)
                      ++.||+++.|..++.|.  ..++||++|.|+++|.|.                   +++||++|+||+++.|.+      
T Consensus        74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~------  147 (185)
T 2p2o_A           74 NIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINP------  147 (185)
T ss_dssp             TEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECT------
T ss_pred             CEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECC------
Confidence            44444444444444442  344666666666666652                   355666666666666655      


Q ss_pred             eccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          129 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       129 ~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                                    ++.||++++|+++++|.++
T Consensus       148 --------------gv~IG~~~vIgagsvV~~~  166 (185)
T 2p2o_A          148 --------------GVTIGDNAVIASGAVVTKD  166 (185)
T ss_dssp             --------------TCEECTTCEECTTCEECSC
T ss_pred             --------------CCEECCCCEECCCCEECCC
Confidence                          5666666666666666554

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.53  E-value=3.3e-14  Score=104.20  Aligned_cols=94  Identities=26%  Similarity=0.298  Sum_probs=62.3

Q ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCc-eeceEECCCCE
Q 030076           73 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ-LLNARIGNHVE  151 (183)
Q Consensus        73 ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~Ig~~~~  151 (183)
                      ++.++.||+++.|..+++|.+.         .+++||++|.|++++.|....+..   .+........ ..+++||++||
T Consensus        71 ~g~~v~IG~~~~i~~~~~i~~~---------~~i~IG~~v~Ig~~v~I~~~~h~~---~~~~~~~~~~~~~~v~IGd~v~  138 (185)
T 2p2o_A           71 YGYNIHVGENFFMNFDGVILDV---------CEVRIGDHCFIGPGVHIYTATHPL---DPHERNSGLEYGKPVVIGHNVW  138 (185)
T ss_dssp             CSTTEEECTTEEECSSEEEECS---------SCEEECTTCEECTTCEEECEECCS---SHHHHHTCCBEECCEEECSSCE
T ss_pred             ecCCEEECCeeEEcCCeEEEec---------cceEECCCcEEeCCCEEEcCCCcC---ChhhcccCccccCCeEEcCCeE
Confidence            4555555544444443333221         346899999999999997521110   0000011111 34899999999


Q ss_pred             ECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          152 IGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       152 Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      ||++++|.+|    ++||++++|+++++|.+
T Consensus       139 IG~~~~I~~g----v~IG~~~vIgagsvV~~  165 (185)
T 2p2o_A          139 IGGRAVINPG----VTIGDNAVIASGAVVTK  165 (185)
T ss_dssp             ECTTCEECTT----CEECTTCEECTTCEECS
T ss_pred             ECCCCEECCC----CEECCCCEECCCCEECC
Confidence            9999999988    99999999999999853

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.52  E-value=4.3e-14  Score=103.33  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=16.4

Q ss_pred             CcEECCCcEECCCCEEC--CCCEECCCcEECCCcEE
Q 030076           70 KAVLGANVCIGSGTVVG--PAVTIGQSTNIGFNVAL  103 (183)
Q Consensus        70 ~~~ig~~~~I~~~~~I~--~~~~Ig~~~~Ig~~~~i  103 (183)
                      ++.||+++.|++++.|.  ..++||++|.|+++|.|
T Consensus        72 ~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I  107 (182)
T 1ocx_A           72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHI  107 (182)
T ss_dssp             TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEE
T ss_pred             CEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEE
Confidence            34444444444444442  23455555555555555

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.52  E-value=2.2e-13  Score=104.85  Aligned_cols=50  Identities=26%  Similarity=0.284  Sum_probs=40.2

Q ss_pred             ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCC-CCeEECCCCEE
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW-RDTVIGDHSKI  174 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~-~~~~Ig~~~~I  174 (183)
                      +++|+++|+||+++.|.+                    +++||++++||+|++|.++++ ..+++|..+.+
T Consensus       189 ~~~IGd~v~IGaga~Il~--------------------gv~IG~~a~IGagsvV~~dVp~~~~v~G~PAr~  239 (267)
T 1ssq_A          189 HPKVREGVMIGAGAKILG--------------------NIEVGKYAKIGANSVVLNPVPEYATAAGVPARI  239 (267)
T ss_dssp             SCEECTTCEECTTCEEES--------------------SCEECTTCEECTTCEECSCBCTTCEEETTTTEE
T ss_pred             CeEECCCeEEcCCCEEeC--------------------CcEECCCCEECCCCEEccCCCCCCEEEecCcEE
Confidence            478999999999999986                    899999999999999988763 33455655544

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.52  E-value=4.4e-13  Score=97.94  Aligned_cols=34  Identities=35%  Similarity=0.522  Sum_probs=18.5

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      +++||++||||++++|.+|    ++||++++|+++++|
T Consensus       128 ~v~IG~~v~Ig~~a~I~~g----v~IG~~~vIgagsvV  161 (182)
T 1ocx_A          128 PVTIGNNVWIGGRAVINPG----VTIGDNVVVASGAVV  161 (182)
T ss_dssp             CEEECTTCEECTTCEECTT----CEECTTCEECTTCEE
T ss_pred             CeEEeCCeEECCCCEECCC----cEECCCCEECCCCEE
Confidence            4555555555555555554    555555555555554

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.51  E-value=3.3e-13  Score=100.99  Aligned_cols=87  Identities=18%  Similarity=0.304  Sum_probs=67.0

Q ss_pred             cEECCCcEEccC---------cEECCCcEECCCCEEC---CCCEECCCcEECCCcEEec--------------------e
Q 030076           59 VLIEVGAIVHSK---------AVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVALSN--------------------C  106 (183)
Q Consensus        59 ~~i~~~~~i~~~---------~~ig~~~~I~~~~~I~---~~~~Ig~~~~Ig~~~~i~~--------------------~  106 (183)
                      +.|++++.|+++         +.||++|.|++.+++.   ..++||++|.|++++.|..                    +
T Consensus        59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v  138 (215)
T 2wlg_A           59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDV  138 (215)
T ss_dssp             EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCE
T ss_pred             EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCe
Confidence            555555555554         5566666666644442   4568999999999999964                    4


Q ss_pred             EECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC
Q 030076          107 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD  165 (183)
Q Consensus       107 ~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~  165 (183)
                      +|+++|+||+++.|.+                    ++.||+++.|++++++.+..++.
T Consensus       139 ~Igd~v~IG~~~~I~~--------------------gv~Ig~~~vIgagsvV~~~vp~~  177 (215)
T 2wlg_A          139 IIGNHVWLGRNVTILK--------------------GVCIPNNVVVGSHTVLYKSFKEP  177 (215)
T ss_dssp             EECTTCEECTTCEECT--------------------TCEECSSCEECTTCEECSCCCCC
T ss_pred             EECCCcEECCCCEECC--------------------CCEECCCCEECCCCEEcCccCCC
Confidence            8999999999999987                    89999999999999998765433

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.50  E-value=3.8e-13  Score=104.45  Aligned_cols=50  Identities=26%  Similarity=0.286  Sum_probs=40.3

Q ss_pred             ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCC-CeEECCCCEE
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWR-DTVIGDHSKI  174 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~-~~~Ig~~~~I  174 (183)
                      +++|+++|+||+++.|.+                    ++.||++++||+|++|.+++++ .++.|..+.+
T Consensus       209 ~~~IGd~v~IGaga~Ilg--------------------gv~IG~~a~IGagsvV~~dVp~~s~v~G~PAr~  259 (289)
T 1t3d_A          209 HPKIREGVMIGAGAKILG--------------------NIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARI  259 (289)
T ss_dssp             SCEECTTCEECTTCEEES--------------------SCEECTTCEECTTCEECSCBCTTCEEETTTTEE
T ss_pred             CeEECCCeEECCCCEEec--------------------CcEECCCCEECCCCEEccCCCCCCEEEecCCEE
Confidence            578999999999999987                    8999999999999999988633 3445555543

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.49  E-value=8e-14  Score=111.81  Aligned_cols=58  Identities=26%  Similarity=0.345  Sum_probs=38.8

Q ss_pred             eEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          106 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       106 ~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ++||++|.|++++.|...            .......+++||++|+||++++  .|    ++||++|+|+++++|.
T Consensus       265 vvIGdnv~Ig~ga~I~g~------------l~g~~~~~VvIGdnv~IGagAv--~G----V~IGdgavIGAGsVVt  322 (387)
T 2rij_A          265 AIVGEGSDVGGGASILGV------------LSGTSGNAISVGKACLLGANSV--TG----IPLGDNCIVDAGIAVL  322 (387)
T ss_dssp             CEECTTCEECTTCEECCB------------CSSTTCCBCEECTTCEECTTCE--EC----SCBCTTCEECTTCEEC
T ss_pred             CEECCCCEECCCceEcce------------ecCCCccCeEEeCCCEECCCCc--CC----cEECCCCEECCCCEEC
Confidence            456666666666655420            0001122588999999999988  56    8888888888888774

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.48  E-value=1.1e-13  Score=114.06  Aligned_cols=16  Identities=25%  Similarity=0.246  Sum_probs=12.4

Q ss_pred             eEECCCCEECCCCeEe
Q 030076          166 TVIGDHSKIDNLVQVG  181 (183)
Q Consensus       166 ~~Ig~~~~I~~~~~v~  181 (183)
                      ++||+++.|++++++.
T Consensus       370 ~~Ig~~v~Ig~~~~i~  385 (456)
T 2v0h_A          370 SEIGSNCNIGAGVITC  385 (456)
T ss_dssp             EEECTTCEECTTCEEE
T ss_pred             cEECCCcEECCceEEe
Confidence            6788888888888764

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.47  E-value=7.6e-13  Score=105.07  Aligned_cols=73  Identities=15%  Similarity=0.217  Sum_probs=39.9

Q ss_pred             cccCC-CcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEE
Q 030076           41 KWHNG-GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII  114 (183)
Q Consensus        41 ~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~I  114 (183)
                      .|+.. ...++++++|.+++.|+.++.|++++.|+++|.|+ +|.|++++.|++++.|+..+.-.++.|++++.+
T Consensus        59 ~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i  132 (334)
T 2pig_A           59 CWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARV  132 (334)
T ss_dssp             CEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEE-SCEEESSCEECTTCEEESCEEESSEEECTTCEE
T ss_pred             eEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEeccEEcCCeEEecCCEE
Confidence            35555 66666666666666666666666666666665555 555555555555555444433333333333333

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.46  E-value=4.5e-13  Score=105.10  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=32.1

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .++||++|+||++++|.++    ++||++|+|+++++|.
T Consensus       251 ~~~IGd~V~IGaga~Il~g----v~IGd~a~IGagsvV~  285 (310)
T 3f1x_A          251 HPILEDDVIVYSNATILGR----VTIGKGATVGGNIWVT  285 (310)
T ss_dssp             SCEECTTCEECTTCEEESS----CEECTTCEECSSCEEC
T ss_pred             CCEECCCcEEcCCCEECCC----cEECCCCEECCCCEEC
Confidence            6789999999999999988    9999999999999985

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.46  E-value=8.7e-13  Score=108.71  Aligned_cols=60  Identities=17%  Similarity=0.230  Sum_probs=26.4

Q ss_pred             cCCCcEEccceEECCCcEECCCcEEccCcE-----ECCCcEECCCCEECCCCEECCCcEECCCcEE
Q 030076           43 HNGGGIFHQSACIDSTVLIEVGAIVHSKAV-----LGANVCIGSGTVVGPAVTIGQSTNIGFNVAL  103 (183)
Q Consensus        43 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~-----ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i  103 (183)
                      +..+..|++++.|.+++.|++++.|++++.     ||++|.|++++.|+ +++||++|.|++++.|
T Consensus       271 ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~-~~~Ig~~~~ig~~~~i  335 (459)
T 4fce_A          271 HGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLE-DARLDANCTVGPFARL  335 (459)
T ss_dssp             ECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEE-SCEECTTCEECSSEEE
T ss_pred             ECCCcEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEe-CCEECCCCEECCccEE
Confidence            344555555555544444455444444433     33333333333331 2234444444444444

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.45  E-value=1e-12  Score=108.65  Aligned_cols=29  Identities=24%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEEC
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKID  175 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~  175 (183)
                      ++.||.++.|.++++|.++    ++||.++.+.
T Consensus       408 ~~~Ig~~~~i~~~v~Ig~~----~~i~~~s~v~  436 (468)
T 1hm9_A          408 NVFVGSNSTIIAPVELGDN----SLVGAGSTIT  436 (468)
T ss_dssp             TCEECTTCEEESSCEECTT----CEECTTCEEC
T ss_pred             CeEECCCCEEeCCcEECCC----CEECCCCEEC
Confidence            6777777777777777766    6666666654

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.45  E-value=3.3e-13  Score=111.26  Aligned_cols=110  Identities=17%  Similarity=0.173  Sum_probs=79.9

Q ss_pred             EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECC----CCEECCCcEECCCcEEeceEECCC------------
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSNCIIGDS------------  111 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~----~~~Ig~~~~Ig~~~~i~~~~I~~~------------  111 (183)
                      .+.+.+.+++++.|++++.| .++.| .++.|+++|.|++    +++||++|.|+++|.|.++++..+            
T Consensus       304 ~~~~~~~i~~~~~i~~~~~i-~~~~I-~~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~  381 (451)
T 1yp2_A          304 FYDRSAPIYTQPRYLPPSKM-LDADV-TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLL  381 (451)
T ss_dssp             SCCSSSCCCCCCCCCCCEEE-EEEEE-EEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHH
T ss_pred             ccCCCCeeccCCccCCCeEE-cceEE-eCeEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccc
Confidence            55667778888888887766 45555 3455555555544    778999999999999988776666            


Q ss_pred             -------CEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC--CCC-------------eEEC
Q 030076          112 -------CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS--WRD-------------TVIG  169 (183)
Q Consensus       112 -------~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~--~~~-------------~~Ig  169 (183)
                             +.||+++.+.                     +++||++|+||+++++..+.  ...             ++||
T Consensus       382 ~~~g~~~~~Ig~~~~i~---------------------~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig  440 (451)
T 1yp2_A          382 AAKGSVPIGIGKNCHIK---------------------RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVI  440 (451)
T ss_dssp             HTTTCCCSEECTTCEEE---------------------SEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEEC
T ss_pred             cccCceeEEECCCCEEe---------------------ccEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCEEEEC
Confidence                   8899998886                     79999999999999998652  111             4566


Q ss_pred             CCCEECCCCeE
Q 030076          170 DHSKIDNLVQV  180 (183)
Q Consensus       170 ~~~~I~~~~~v  180 (183)
                      ++++|+++++|
T Consensus       441 ~~a~i~agsvv  451 (451)
T 1yp2_A          441 KDALIPSGIII  451 (451)
T ss_dssp             TTCEECTTCBC
T ss_pred             CCcEECCCccC
Confidence            66666666553

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.44  E-value=4.8e-13  Score=107.32  Aligned_cols=93  Identities=14%  Similarity=0.330  Sum_probs=73.4

Q ss_pred             CcEEccceEECCCcEECCCcEEccC-cEECCCcE-ECCCCEE----CCCCEECCCcEECCCcEE----ec-----eEECC
Q 030076           46 GGIFHQSACIDSTVLIEVGAIVHSK-AVLGANVC-IGSGTVV----GPAVTIGQSTNIGFNVAL----SN-----CIIGD  110 (183)
Q Consensus        46 ~~~i~~~~~i~~~~~i~~~~~i~~~-~~ig~~~~-I~~~~~I----~~~~~Ig~~~~Ig~~~~i----~~-----~~I~~  110 (183)
                      +..|++++.|.+++.|++++.|+++ +.|+.++. ||+ |.|    +.+++||++|.|+.++.|    .+     ++|++
T Consensus       217 gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~nv~vIG~-~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGd  295 (387)
T 2rij_A          217 NTRILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGA-CMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGK  295 (387)
T ss_dssp             TCEESCGGGBBTTCBCCTTCEECSSSCEECTTCEESSC-CEECSEECTTCEECTTCEECTTCEECCBCSSTTCCBCEECT
T ss_pred             CEEEcCCCEECCCeEEcCCCEEeCCeeEECCCcEEECC-EEEeeEECCCCEECCCCEECCCceEcceecCCCccCeEEeC
Confidence            6677787878778888888888775 77777777 666 644    556788888888888864    32     78889


Q ss_pred             CCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       111 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      +|+||+++.  .                    ++.||++|+|+++++|.++
T Consensus       296 nv~IGagAv--~--------------------GV~IGdgavIGAGsVVt~d  324 (387)
T 2rij_A          296 ACLLGANSV--T--------------------GIPLGDNCIVDAGIAVLEG  324 (387)
T ss_dssp             TCEECTTCE--E--------------------CSCBCTTCEECTTCEECTT
T ss_pred             CCEECCCCc--C--------------------CcEECCCCEECCCCEECCC
Confidence            999988888  3                    8899999999999999988

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.43  E-value=4.3e-12  Score=94.16  Aligned_cols=101  Identities=27%  Similarity=0.339  Sum_probs=67.5

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECC--CCEECCCcEECCCcEEe-------------------ceE
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP--AVTIGQSTNIGFNVALS-------------------NCI  107 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~--~~~Ig~~~~Ig~~~~i~-------------------~~~  107 (183)
                      ++++++|.++..+.    ++.++.||+++.|+.++.|.+  .++||++|.|+++|.|.                   +++
T Consensus        58 ig~~~~I~~~~~~~----~g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~  133 (203)
T 1krr_A           58 VGENAWVEPPVYFS----YGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPIT  133 (203)
T ss_dssp             CCSSCEECSCEEES----CSTTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEE
T ss_pred             cCCCcEEcCCeEEE----eCCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcE
Confidence            44455555554321    223445555555555555532  35777777777777662                   478


Q ss_pred             ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeE-ECCCCE
Q 030076          108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV-IGDHSK  173 (183)
Q Consensus       108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~-Ig~~~~  173 (183)
                      ||++|+||+++.|.+                    ++.||++++|+++++|.++.+++++ .|..|.
T Consensus       134 IGd~v~IG~~a~I~~--------------------gv~IG~~~vIgagsvV~~dvp~~~vv~G~PAr  180 (203)
T 1krr_A          134 IGNNVWIGSHVVINP--------------------GVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCR  180 (203)
T ss_dssp             ECTTCEECTTCEECT--------------------TCEECTTCEECTTCEECSCBCTTEEEETTTTE
T ss_pred             ECCCeEECCCCEEeC--------------------CeEECCCCEECCCCEECCCcCCCcEEEccCcE
Confidence            999999999999997                    8999999999999999887544433 444443

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.40  E-value=4.7e-13  Score=100.46  Aligned_cols=38  Identities=34%  Similarity=0.332  Sum_probs=34.4

Q ss_pred             ceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          140 QLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       140 ~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ..++++||++|+||++++|.++    ++||++++|+++++|.
T Consensus       115 ~~g~v~Igd~v~IG~~a~I~~g----v~IG~~~~IgagsvV~  152 (219)
T 4e8l_A          115 LKGDIEIGNDVWIGRDVTIMPG----VKIGDGAIIAAEAVVT  152 (219)
T ss_dssp             CCCCEEECSSCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             ccCCcEECCCeEECCCCEEcCC----CEECCCCEECCCCEEc
Confidence            3458999999999999999988    9999999999999985

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.38  E-value=2.3e-12  Score=99.88  Aligned_cols=35  Identities=31%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .++||++|+||++++|.++    ++||++|+|+++++|.
T Consensus       216 ~~~IGd~v~IGaga~Il~g----v~IG~~a~IGagsvV~  250 (287)
T 3mc4_A          216 HPKIRQGVLIGAGAKILGN----IQVGQCSKIAAGSVVL  250 (287)
T ss_dssp             SCEECTTCEECTTCEEESS----CEECTTCEECTTCEEC
T ss_pred             CCEECCCCEECCCCEECCC----cEECCCCEECCCCEEc
Confidence            5889999999999999988    9999999999999885

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.38  E-value=9.9e-13  Score=98.27  Aligned_cols=36  Identities=31%  Similarity=0.329  Sum_probs=28.3

Q ss_pred             eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       142 ~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ++++||++||||++++|.++    ++||++|+|+++++|.
T Consensus       110 g~v~IG~~v~IG~~a~I~~g----v~IG~~~iIgagsvV~  145 (212)
T 3eev_A          110 GDTIIGHDVWIGTEAMIMPG----VKIGHGAIIASRSVVT  145 (212)
T ss_dssp             CCEEECSSCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             CCeEECCCCEECCCCEEcCC----CEECCCCEECCCCEEc
Confidence            46788888888888888877    8888888888888774

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.35  E-value=2.5e-11  Score=93.43  Aligned_cols=80  Identities=19%  Similarity=0.255  Sum_probs=69.5

Q ss_pred             CCCcEEccceEECCCcEEC--CCcEEccCcEECCCcEECCCCEECCC--------CEECCCcEECCCcEEe-ceEECCCC
Q 030076           44 NGGGIFHQSACIDSTVLIE--VGAIVHSKAVLGANVCIGSGTVVGPA--------VTIGQSTNIGFNVALS-NCIIGDSC  112 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~I~~~~~I~~~--------~~Ig~~~~Ig~~~~i~-~~~I~~~~  112 (183)
                      ..+..|++++.|++++.|+  .+++|++++.||++|.|++++.|++.        ++||++|.||.++.|. +++||++|
T Consensus       135 ~~g~~I~p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a  214 (267)
T 1ssq_A          135 AFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYA  214 (267)
T ss_dssp             HHSCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTC
T ss_pred             ccceEeCCCCEECCCEEECCCCceEECCeeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCC
Confidence            4466789999999999998  47899999999999999999999764        6999999999999984 68999999


Q ss_pred             EECCCcEECCC
Q 030076          113 IIHNGVCIGQD  123 (183)
Q Consensus       113 ~Ig~~~~i~~~  123 (183)
                      .||+++.+..+
T Consensus       215 ~IGagsvV~~d  225 (267)
T 1ssq_A          215 KIGANSVVLNP  225 (267)
T ss_dssp             EECTTCEECSC
T ss_pred             EECCCCEEccC
Confidence            99999999853

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.32  E-value=9.5e-13  Score=98.18  Aligned_cols=38  Identities=32%  Similarity=0.285  Sum_probs=32.8

Q ss_pred             ceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          140 QLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       140 ~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ..++++||++|+||++++|.++    ++||++++|+++++|.
T Consensus       110 ~~~~v~Ig~~v~IG~~a~I~~g----v~Ig~~~~Igags~V~  147 (209)
T 1mr7_A          110 IKGDTIIGNDVWIGKDVVIMPG----VKIGDGAIVAANSVVV  147 (209)
T ss_dssp             CCCCEEECSSCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             ccCCcEECCCCEEcCCCEEcCC----CEECCCCEEcCCCEEc
Confidence            3457999999999999999988    9999999999998874

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.31  E-value=8e-12  Score=102.15  Aligned_cols=85  Identities=16%  Similarity=0.092  Sum_probs=71.0

Q ss_pred             CcEECCCcEECC-----CCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCCCCceeeccCCccccCCceece
Q 030076           70 KAVLGANVCIGS-----GTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA  144 (183)
Q Consensus        70 ~~~ig~~~~I~~-----~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  144 (183)
                      .+.+.+.+.|++     ++.+ .++.||++|.| +++.|.+++|+++|.|++++.|.                     ++
T Consensus       302 ~~~i~~~~~i~~~~~~~~~~i-~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~---------------------~~  358 (420)
T 3brk_X          302 YAEITPPAKFVHDDEDRRGSA-VSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLE---------------------NA  358 (420)
T ss_dssp             CCCCCCCCEEECBCSSCBCEE-ESCEECSSCEE-ESCEEESCEECTTCEECTTCEEE---------------------EE
T ss_pred             ccccCCCcEEecccccCCcEe-cCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEc---------------------ce
Confidence            334444444444     6777 57789999999 88999999999999999999997                     89


Q ss_pred             EECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          145 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       145 ~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      +|+++++|++++.|. +    ++||+++.|+++++|++
T Consensus       359 ~i~~~~~i~~~~~i~-~----~~ig~~~~i~~~~~i~~  391 (420)
T 3brk_X          359 VVLPSVKIGRHAQLS-N----VVIDHGVVIPEGLIVGE  391 (420)
T ss_dssp             EECTTCEECTTCEEE-E----EEECTTCEECTTCEESS
T ss_pred             EEcCCCEECCCCEEe-c----eEECCCCEECCCCEEeC
Confidence            999999999999997 3    99999999999999864

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.31  E-value=5.8e-11  Score=92.19  Aligned_cols=80  Identities=23%  Similarity=0.285  Sum_probs=68.7

Q ss_pred             CCCcEEccceEECCCcEEC--CCcEEccCcEECCCcEECCCCEECCC--------CEECCCcEECCCcEEe-ceEECCCC
Q 030076           44 NGGGIFHQSACIDSTVLIE--VGAIVHSKAVLGANVCIGSGTVVGPA--------VTIGQSTNIGFNVALS-NCIIGDSC  112 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~I~~~~~I~~~--------~~Ig~~~~Ig~~~~i~-~~~I~~~~  112 (183)
                      ..+..|++++.|++++.|+  .+++|++++.||++|.|++++.|++.        ++||++|.||.+|.|. +++||++|
T Consensus       155 ~~g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a  234 (289)
T 1t3d_A          155 TFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGA  234 (289)
T ss_dssp             HHSCEECTTCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTC
T ss_pred             ccceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECCCC
Confidence            3466788999999999997  57899999999999999999999753        6999999999999984 68899999


Q ss_pred             EECCCcEECCC
Q 030076          113 IIHNGVCIGQD  123 (183)
Q Consensus       113 ~Ig~~~~i~~~  123 (183)
                      .||+++.+..+
T Consensus       235 ~IGagsvV~~d  245 (289)
T 1t3d_A          235 KIGAGSVVLQP  245 (289)
T ss_dssp             EECTTCEECSC
T ss_pred             EECCCCEEccC
Confidence            99999999863

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.26  E-value=5.1e-11  Score=88.93  Aligned_cols=42  Identities=21%  Similarity=0.274  Sum_probs=36.9

Q ss_pred             eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC
Q 030076          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD  165 (183)
Q Consensus       104 ~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~  165 (183)
                      .+++||++|+||+++.|.+                    ++.||++|+|+++++|.+.+++.
T Consensus       110 g~v~IG~~v~IG~~a~I~~--------------------gv~IG~~~iIgagsvV~~dVp~~  151 (212)
T 3eev_A          110 GDTIIGHDVWIGTEAMIMP--------------------GVKIGHGAIIASRSVVTKDVAPY  151 (212)
T ss_dssp             CCEEECSSCEECTTCEECT--------------------TCEECTTCEECTTCEECSCBCTT
T ss_pred             CCeEECCCCEECCCCEEcC--------------------CCEECCCCEECCCCEEccccCCC
Confidence            3578999999999999998                    89999999999999999775433

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=99.17  E-value=8.8e-11  Score=87.62  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=28.2

Q ss_pred             eceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          142 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       142 ~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ++++||++|+||++++|.+|    ++||++|+|+++++|.
T Consensus       109 ~~v~IG~~v~IG~~a~I~~g----v~Ig~~~~IgagsvV~  144 (212)
T 1xat_A          109 GDTLIGHEVWIGTEAMFMPG----VRVGHGAIIGSRALVT  144 (212)
T ss_dssp             CCEEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             CCeEECCCCEECCCCEEeCC----CEECCCCEECCCCEEc
Confidence            36788888888888888877    8888888888888774

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.15  E-value=1.3e-10  Score=86.63  Aligned_cols=42  Identities=26%  Similarity=0.340  Sum_probs=36.1

Q ss_pred             eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC
Q 030076          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD  165 (183)
Q Consensus       104 ~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~  165 (183)
                      .+++|+++|+||.++.|.+                    ++.||++++|+++++|.+.+++.
T Consensus       112 ~~v~Ig~~v~IG~~a~I~~--------------------gv~Ig~~~~Igags~V~~~v~~~  153 (209)
T 1mr7_A          112 GDTIIGNDVWIGKDVVIMP--------------------GVKIGDGAIVAANSVVVKDIAPY  153 (209)
T ss_dssp             CCEEECSSCEECTTCEECT--------------------TCEECTTCEECTTCEECSCBCTT
T ss_pred             CCcEECCCCEEcCCCEEcC--------------------CCEECCCCEEcCCCEEcCCCCCC
Confidence            4588999999999999987                    89999999999999998764433

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.14  E-value=2.8e-10  Score=85.31  Aligned_cols=43  Identities=21%  Similarity=0.287  Sum_probs=36.8

Q ss_pred             eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCe
Q 030076          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT  166 (183)
Q Consensus       104 ~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~  166 (183)
                      .+++|+++|+||.++.|.+                    ++.||+++.|+++++|.+.+++.+
T Consensus       117 g~v~Igd~v~IG~~a~I~~--------------------gv~IG~~~~IgagsvV~~dv~~~~  159 (219)
T 4e8l_A          117 GDIEIGNDVWIGRDVTIMP--------------------GVKIGDGAIIAAEAVVTKNVAPYS  159 (219)
T ss_dssp             CCEEECSSCEECTTCEECT--------------------TCEECTTCEECTTCEECSCBCTTE
T ss_pred             CCcEECCCeEECCCCEEcC--------------------CCEECCCCEECCCCEEcccCCCCe
Confidence            4588999999999999987                    899999999999999987754443

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=99.03  E-value=4.2e-09  Score=78.49  Aligned_cols=85  Identities=19%  Similarity=0.221  Sum_probs=57.6

Q ss_pred             cCcEECCCcEECCCCEEC-CCC--EECC---------------CcEECCCcEE-eceEECCCCEECCCcEECCCCCceee
Q 030076           69 SKAVLGANVCIGSGTVVG-PAV--TIGQ---------------STNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFV  129 (183)
Q Consensus        69 ~~~~ig~~~~I~~~~~I~-~~~--~Ig~---------------~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~~~~~~~  129 (183)
                      ..+.||++|.|++++.|. .+.  ...+               .+.+++++.+ ..++||++|+||.++.|.+       
T Consensus        55 ~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~~~i~~~~~~~~~v~IG~~v~IG~~a~I~~-------  127 (212)
T 1xat_A           55 DKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMP-------  127 (212)
T ss_dssp             CCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECT-------
T ss_pred             cCEEEcCCCEECCCCEEEeCCCCccccccccccceeeecccccccccccCceecCCeEECCCCEECCCCEEeC-------
Confidence            456677777777777651 110  1111               1334455555 3589999999999999998       


Q ss_pred             ccCCccccCCceeceEECCCCEECCCcEEcCCCCCCe-EECCCCE
Q 030076          130 DEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT-VIGDHSK  173 (183)
Q Consensus       130 ~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~-~Ig~~~~  173 (183)
                                   ++.||+++.|+++++|.+..++.+ +.|..+.
T Consensus       128 -------------gv~Ig~~~~IgagsvV~~~vp~~~~~~G~Pa~  159 (212)
T 1xat_A          128 -------------GVRVGHGAIIGSRALVTGDVEPYAIVGGNPAR  159 (212)
T ss_dssp             -------------TCEECTTCEECTTCEECSCBCTTEEEETTTTE
T ss_pred             -------------CCEECCCCEECCCCEEcccCCCCcEEEccCCE
Confidence                         899999999999999998754443 3344443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	2e-15
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	6e-13
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	4e-11
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	5e-06
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	6e-05
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	0.002
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	5e-06
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	3e-05
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	9e-05
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	2e-04
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	0.002

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 70.3 bits (171), Expect = 2e-15
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 10/132 (7%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCII 114
           ID +  +   AIV   A +GAN  IG   +VGP V IG+ T +      S+ ++     I
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLK-----SHVVVNGHTKI 56

Query: 115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS---WRDTVIGDH 171
                I Q      V++      +P  +   IG+   I  +  I RG+      T +G  
Sbjct: 57  GRDNEIYQFASIGEVNQDLKYAGEPTRVE--IGDRNRIRESVTIHRGTVQGGGLTKVGSD 114

Query: 172 SKIDNLVQVGFC 183
           + +     +   
Sbjct: 115 NLLMINAHIAHD 126

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 63.3 bits (153), Expect = 6e-13
 Identities = 18/135 (13%), Positives = 43/135 (31%), Gaps = 6/135 (4%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
           I+ ++A   +   I   A +     L  NV IG    +  A     +         S+ +
Sbjct: 59  IYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSV 118

Query: 108 IG------DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 161
                   D+ +++    +   G      +   +  +  + ++RI + V++  N+ I   
Sbjct: 119 REECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHA 178

Query: 162 SWRDTVIGDHSKIDN 176
                       +  
Sbjct: 179 FIEHRAEVFDFALIE 193

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 57.7 bits (138), Expect = 4e-11
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 6/120 (5%)

Query: 65  AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQD 123
           AI+  KA +   V IG   V+G  V + +   +  NV L  +  +G +  I     +G  
Sbjct: 7   AIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQ 66

Query: 124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGFC 183
                     + L   +          E    +    G  + T+IGD + +   V V   
Sbjct: 67  PQDLKYKGEYSELIIGE-----DNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHD 121

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (95), Expect = 5e-06
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 67  VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 120
           +      G +V I +  ++   VT+G    IG    + N +IGD C I     +
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVV 64

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (87), Expect = 6e-05
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVALSNCIIG 109
           +  T+       + +  ++  NV +G    +G         IG    I     + +  + 
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 110 DSCII 114
            +C I
Sbjct: 71  AACTI 75

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 27/87 (31%)

Query: 89  VTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIG 147
           +T G+   I  NV +  N  +G    I  G  I                      N+ IG
Sbjct: 15  LTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIK---------------------NSVIG 53

Query: 148 NHVEIGANSCIDRGSWRDTVIGDHSKI 174
           +  EI   + ++     D  +     I
Sbjct: 54  DDCEISPYTVVE-----DANLAAACTI 75

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 52  SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA--------VTIGQSTNIGFN-VA 102
            A +D   +++  A V S A +G NV +  G  +G            I  +  IG     
Sbjct: 131 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEV 190

Query: 103 LSNCIIGDSCIIHNGVCIGQDGFGF 127
           +   I+ +  +I  GV +GQ    +
Sbjct: 191 VEGVIVEEGSVISMGVYLGQSTRIY 215

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 1/108 (0%)

Query: 51  QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGD 110
             + +     I  GAI+    ++GA+           A        IG N  +   II  
Sbjct: 29  HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDK 88

Query: 111 SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 158
           +  I + V I             +     +     +     I +   I
Sbjct: 89  NARIGDNVKIINKDNVQEAARETDG-YFIKSGIVTVIKDALIPSGIII 135

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 9e-05
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 3/115 (2%)

Query: 67  VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFG 126
           +      G +V I +  ++   VT+G    IG    + N +IGD C I     +      
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 127 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG 181
                      +P    A +     +G    + +          H       ++G
Sbjct: 71  AACTIGPFARLRPG---AELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIG 122

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 20/136 (14%), Positives = 32/136 (23%), Gaps = 11/136 (8%)

Query: 48  IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 107
             +      S   I              NV +G  +                 +     I
Sbjct: 7   KMYPIEGNKSVQFI------KPILEKLENVEVGEYSYYDSKNGET----FDKQILYHYPI 56

Query: 108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 167
           + D   I     IG  G    ++   + +          GN  E             DT+
Sbjct: 57  LNDKLKIGKFCSIGP-GVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTI 115

Query: 168 IGDHSKIDNLVQVGFC 183
           IG+   I   V +   
Sbjct: 116 IGNDVWIGKDVVIMPG 131

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 55  IDSTVLIEVGAIVHSKAVLGANVCIGSGTVV----GPAVTIGQSTNI-GFNVALSNCIIG 109
           ID T  I+  A V  +  +GANV +     +    G  + +G  +N+    V  +   I 
Sbjct: 25  IDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETIN 84

Query: 110 DSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQL---LNARIGNHVEIGANSCIDRGSW-RD 165
           +         +  DG  + V    N+    Q      A +G+   IG  + + +     +
Sbjct: 85  EEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNN 144

Query: 166 TVIGDHSKIDNLV 178
            V+   S    + 
Sbjct: 145 CVLEPRSAAIGVT 157

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.82
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.79
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.76
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.74
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.74
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.71
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.71
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.71
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.69
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.69
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.68
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.63
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.61
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.61
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.61
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.6
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.59
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.59
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.57
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.55
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.55
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.54
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.53
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.52
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.49
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.42
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.39
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.38
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.36
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.26
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.19
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	99.1
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.1
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.77

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.82  E-value=3.9e-19  Score=135.22  Aligned_cols=135  Identities=20%  Similarity=0.148  Sum_probs=80.6

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------ceEECC
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGD  110 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------~~~I~~  110 (183)
                      .++..|+|.+.|++++.|+++|+|++++.|+++|.|++++.|.+++.||+++.|.+++.|.             ...+++
T Consensus         4 h~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig~   83 (259)
T d1j2za_           4 AKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGE   83 (259)
T ss_dssp             CTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECS
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEecc
Confidence            3444556666666666666666666666666666666666666666666666666666651             123344


Q ss_pred             CCEECCCcEECCCCC---cee------------------eccCCcccc-CCc-eeceEECCCCEECCCcEEcCCCCCCeE
Q 030076          111 SCIIHNGVCIGQDGF---GFF------------------VDEHGNMLK-KPQ-LLNARIGNHVEIGANSCIDRGSWRDTV  167 (183)
Q Consensus       111 ~~~Ig~~~~i~~~~~---~~~------------------~~~~~~~~~-~~~-~~~~~Ig~~~~Ig~~~~v~~g~~~~~~  167 (183)
                      ++.++.++.+....+   ...                  ...+...+. ... .+.+.||++||||.++.+.++    +.
T Consensus        84 ~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~g----v~  159 (259)
T d1j2za_          84 DNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQF----VR  159 (259)
T ss_dssp             SCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTT----CE
T ss_pred             ccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecc----cE
Confidence            444433333332110   000                  011111111 111 147999999999999999998    99


Q ss_pred             ECCCCEECCCCeEee
Q 030076          168 IGDHSKIDNLVQVGF  182 (183)
Q Consensus       168 Ig~~~~I~~~~~v~~  182 (183)
                      ||++|+|+++++|.+
T Consensus       160 IG~~a~IgagSvV~k  174 (259)
T d1j2za_         160 IAKGCMIAGKSALGK  174 (259)
T ss_dssp             ECTTCEECTTCEECS
T ss_pred             eccceeeeeeeeecc
Confidence            999999999999964

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.79  E-value=1.6e-18  Score=131.95  Aligned_cols=135  Identities=21%  Similarity=0.303  Sum_probs=83.9

Q ss_pred             CCCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-------------------
Q 030076           44 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------------  104 (183)
Q Consensus        44 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-------------------  104 (183)
                      ....+|+|.+.|++++.|++++.|+++++|++++.||++|.|+++++|++++.|++++.+.                   
T Consensus         3 ~~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~   82 (262)
T d2jf2a1           3 DKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPT   82 (262)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCC
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCc
Confidence            3455677777777777777777777777666666666666666666555555555555441                   


Q ss_pred             ceEECCCCEECCCcEECCCCCc---eeeccC------------------Ccccc-CCce-eceEECCCCEECCCcEEcCC
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFG---FFVDEH------------------GNMLK-KPQL-LNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~---~~~~~~------------------~~~~~-~~~~-~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      .+.||+++.|++++.+....+.   .+...+                  ...+. ...+ +.+.||++|+||.++.+.++
T Consensus        83 ~v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~  162 (262)
T d2jf2a1          83 RVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQF  162 (262)
T ss_dssp             EEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             eEEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccc
Confidence            2556666666666666543110   011111                  11110 1122 35888888888888888877


Q ss_pred             CCCCeEECCCCEECCCCeEee
Q 030076          162 SWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       162 ~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                          ++||+++.|+++|.|.+
T Consensus       163 ----v~IG~~a~igagS~Vtk  179 (262)
T d2jf2a1         163 ----CIIGAHVMVGGCSGVAQ  179 (262)
T ss_dssp             ----CEECTTCEECSSCEECS
T ss_pred             ----cEeehhceeeccceEee
Confidence                99999999999998853

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.76  E-value=8.8e-18  Score=123.91  Aligned_cols=101  Identities=21%  Similarity=0.343  Sum_probs=55.9

Q ss_pred             ECCCcEECCCcEEccCcEECCCcEECCCCEEC----CCCEECCCcEECCCcEEe------------------------ce
Q 030076           55 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG----PAVTIGQSTNIGFNVALS------------------------NC  106 (183)
Q Consensus        55 i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~----~~~~Ig~~~~Ig~~~~i~------------------------~~  106 (183)
                      |+++++|+++++|.+++.||++|.|+++|+|+    ..++||++|.|+++|.|.                        .+
T Consensus        25 I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (210)
T d1qrea_          25 IDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAV  104 (210)
T ss_dssp             ECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESE
T ss_pred             cCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccce
Confidence            33333333333444445555555555555552    244555555555555551                        35


Q ss_pred             EECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          107 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       107 ~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      .|+++|+|++++.|.+                    ++.||++++||+++++..     ++||++++|++++.+
T Consensus       105 ~IG~~v~IG~~~~i~g--------------------~~~IGd~~~IG~gs~i~~-----~~IG~~~vIg~~svv  153 (210)
T d1qrea_         105 YIGNNVSLAHQSQVHG--------------------PAAVGDDTFIGMQAFVFK-----SKVGNNCVLEPRSAA  153 (210)
T ss_dssp             EECTTCEECTTCEEEE--------------------EEEECTTCEECTTCEEEE-----EEECTTCEECTTCEE
T ss_pred             eecccccccccccccc--------------------CCcccCCcEeeCCccccc-----cccccCcEEecCcEe
Confidence            6677777777776654                    566666666666666653     345666665555544

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.74  E-value=6.2e-17  Score=117.37  Aligned_cols=38  Identities=29%  Similarity=0.321  Sum_probs=34.8

Q ss_pred             eeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          141 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       141 ~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      ..+++||+++|+|.++.+.++    ++||++++|+++++|.+
T Consensus       140 ~~~~~Ig~~~~iG~~~~I~~g----v~IG~~s~IgagsvVtk  177 (196)
T d1g97a1         140 KYKTVIGNNVFVGSNSTIIAP----VELGDNSLVGAGSTITK  177 (196)
T ss_dssp             BCCEEECTTCEECTTCEEESS----CEECTTCEECTTCEECS
T ss_pred             eeeeEEecCCEEeeeeEEcCC----cEECCCCEECCCCEECc
Confidence            358999999999999999999    99999999999999853

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.74  E-value=3.1e-17  Score=124.76  Aligned_cols=118  Identities=26%  Similarity=0.338  Sum_probs=70.7

Q ss_pred             CCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCc
Q 030076           56 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGN  134 (183)
Q Consensus        56 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~  134 (183)
                      ++++.|++++.|++++.||++|.|+++|+|++++.||++|.|++++.|. ++.|++++.+.+++.++..+..+       
T Consensus         3 ~~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~-------   75 (262)
T d2jf2a1           3 DKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDL-------   75 (262)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCT-------
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccc-------
Confidence            4455555555556666677777777777777777777777777777773 57788888888888877542211       


Q ss_pred             cccCCceeceEECCCCEECCCcEEcCCCC---CCeEECCCCEECCCCeEe
Q 030076          135 MLKKPQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       135 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~---~~~~Ig~~~~I~~~~~v~  181 (183)
                       ........+.||+++.|++++++..+..   ..|+||+++.|+++++|+
T Consensus        76 -~~~~~~~~v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~  124 (262)
T d2jf2a1          76 -KYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIA  124 (262)
T ss_dssp             -TCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEEC
T ss_pred             -cccccCceEEECCeeeecceEeccCccccCccceEECCCCEEecccccc
Confidence             0011112456666666666666655542   124555555555555443

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.71  E-value=1.1e-16  Score=118.02  Aligned_cols=114  Identities=20%  Similarity=0.268  Sum_probs=87.1

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEE----------CCCcEECCCCEECC-----------------------C
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVL----------GANVCIGSGTVVGP-----------------------A   88 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i----------g~~~~I~~~~~I~~-----------------------~   88 (183)
                      .+.++.+|+|.|.|.+++.|++++.|+++++|          |++|.|+++++|+.                       .
T Consensus        24 ~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (210)
T d1qrea_          24 VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYA  103 (210)
T ss_dssp             EECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEES
T ss_pred             ccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccc
Confidence            45666667776665555667777777666554          56666666666631                       3


Q ss_pred             CEECCCcEECCCcEEe-ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeE
Q 030076           89 VTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV  167 (183)
Q Consensus        89 ~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~  167 (183)
                      +.||++|.|++++.|. .+.|+++++||.++.+.                     ++.||++++|++++.+. |    ++
T Consensus       104 ~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~---------------------~~~IG~~~vIg~~svv~-g----~~  157 (210)
T d1qrea_         104 VYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVF---------------------KSKVGNNCVLEPRSAAI-G----VT  157 (210)
T ss_dssp             EEECTTCEECTTCEEEEEEEECTTCEECTTCEEE---------------------EEEECTTCEECTTCEEE-S----CE
T ss_pred             eeeccccccccccccccCCcccCCcEeeCCcccc---------------------ccccccCcEEecCcEec-C----cE
Confidence            5789999999999995 68999999999999998                     56899999999999875 4    67


Q ss_pred             ECCCCEECCCCeEe
Q 030076          168 IGDHSKIDNLVQVG  181 (183)
Q Consensus       168 Ig~~~~I~~~~~v~  181 (183)
                      |++++.|.+++.++
T Consensus       158 i~~g~~I~~g~~v~  171 (210)
T d1qrea_         158 IPDGRYIPAGMVVT  171 (210)
T ss_dssp             ECTTBEECTTCEEC
T ss_pred             eCCCcEECCCcEEe
Confidence            78888888877774

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.71  E-value=1.4e-16  Score=115.87  Aligned_cols=100  Identities=24%  Similarity=0.449  Sum_probs=56.4

Q ss_pred             CcEEccceEECCCcEECC--CcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECCC
Q 030076           46 GGIFHQSACIDSTVLIEV--GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD  123 (183)
Q Consensus        46 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~~  123 (183)
                      ...|+|.+.|++++.++.  ++.|.+++.|++++.||+++.|..++.|+++           +.|+++|.+++++.+.. 
T Consensus        74 ~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~-----------~~Ig~~~~i~~~~~i~g-  141 (193)
T d3bswa1          74 VNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHE-----------CVIGEFSHVSVGAKCAG-  141 (193)
T ss_dssp             CCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTT-----------CEECTTCEECTTCEECT-
T ss_pred             ceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeecccccccccccee-----------eeccccccccccccccc-
Confidence            345666666666666533  3444444444444444444444333333332           34555566666666654 


Q ss_pred             CCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          124 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                                         .+.||++|+||+++++.++    +.||++|+|+++++|
T Consensus       142 -------------------~v~Ig~~~~IG~~s~I~~~----v~Ig~~~~IgagsvV  175 (193)
T d3bswa1         142 -------------------NVKIGKNCFLGINSCVLPN----LSLADDSILGGGATL  175 (193)
T ss_dssp             -------------------TCEECTTCEECTTCEECTT----CEECTTCEECTTCEE
T ss_pred             -------------------cceeeccccCCceeeEcCC----eEECCCCEECCCCEE
Confidence                               5666666666666666666    666666666666665

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.71  E-value=7.2e-17  Score=115.31  Aligned_cols=104  Identities=23%  Similarity=0.262  Sum_probs=68.0

Q ss_pred             eEECCCcEECCCcEEccCcEECCCcEECCCCEECCC---CEECCCcEECCCcEEec-----eEECCCCEECCCcEECCCC
Q 030076           53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA---VTIGQSTNIGFNVALSN-----CIIGDSCIIHNGVCIGQDG  124 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~---~~Ig~~~~Ig~~~~i~~-----~~I~~~~~Ig~~~~i~~~~  124 (183)
                      +.|++++.|++++.|.+++.||++|.|+++|+|++.   +.||+++.+++++.+..     ++|++++.+..++.+.   
T Consensus        13 ~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~---   89 (172)
T d1xhda_          13 PKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILH---   89 (172)
T ss_dssp             CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEE---
T ss_pred             CEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeeccc---
Confidence            345555555555555556666666666666666432   46677777777666632     5666666666666665   


Q ss_pred             CceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          125 FGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                                        ++.|+++++++.++++.++    ++||++|+|+++|+|.
T Consensus        90 ------------------~~~i~~~~~ig~~~~i~~g----v~IG~~~~IgagsvV~  124 (172)
T d1xhda_          90 ------------------SCHIKKDALIGMGSIILDG----AEIGEGAFIGAGSLVS  124 (172)
T ss_dssp             ------------------SCEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             ------------------ccccccceEEecccEeeCC----cEEcCcccccceEEEe
Confidence                              6777777777777777777    7777777777777763

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.1e-16  Score=115.39  Aligned_cols=35  Identities=40%  Similarity=0.500  Sum_probs=30.1

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ++.||++||||++++|.+|    ++||++|+|+++|+|.
T Consensus       130 ~v~Igd~v~IG~~~~I~~G----v~IG~~~vIgagSvV~  164 (200)
T d1krra_         130 PITIGNNVWIGSHVVINPG----VTIGDNSVIGAGSIVT  164 (200)
T ss_dssp             CEEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             eEEEccCcccceeeecccc----cccCCCcEEeCCCEEe
Confidence            7888888888888888888    8888888888888874

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.69  E-value=4.2e-16  Score=118.26  Aligned_cols=55  Identities=24%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEE
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL  103 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i  103 (183)
                      |+|.|.|++++.|++++.|+++++|++++.|++++.|+++++|++++.||+++.+
T Consensus         3 Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i   57 (259)
T d1j2za_           3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEI   57 (259)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEE
T ss_pred             CCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeeccc
Confidence            5556666666666555555555555555555555555555555555554444444

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.68  E-value=6.3e-16  Score=112.38  Aligned_cols=113  Identities=16%  Similarity=0.338  Sum_probs=99.2

Q ss_pred             hhcccCCCcEEccceEEC--CCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe-ceEECCCCEEC
Q 030076           39 FQKWHNGGGIFHQSACID--STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIH  115 (183)
Q Consensus        39 ~~~~~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~-~~~I~~~~~Ig  115 (183)
                      +..+..+.+.+++++.++  .++.|++++.|++++.||++|.|..++.|+.++.|++++.+++++.+. ++.|+++|+||
T Consensus        73 ~~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG  152 (193)
T d3bswa1          73 IVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLG  152 (193)
T ss_dssp             BCCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             cceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeeccccccccccccccccceeeccccCC
Confidence            345678889999999995  478999999999999999999999999999999999999999999994 58999999999


Q ss_pred             CCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCC-CCeEECCC
Q 030076          116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW-RDTVIGDH  171 (183)
Q Consensus       116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~-~~~~Ig~~  171 (183)
                      .++.|.+                    ++.||+++.|+++++|.+.++ ..+++|..
T Consensus       153 ~~s~I~~--------------------~v~Ig~~~~IgagsvV~~dv~~~~~~~G~P  189 (193)
T d3bswa1         153 INSCVLP--------------------NLSLADDSILGGGATLVKNQDEKGVFVGVP  189 (193)
T ss_dssp             TTCEECT--------------------TCEECTTCEECTTCEECSCBCSCCEECCCC
T ss_pred             ceeeEcC--------------------CeEECCCCEECCCCEECcCCCCCcEEEEeC
Confidence            9999998                    899999999999999987753 33444433

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.63  E-value=3.7e-15  Score=106.27  Aligned_cols=109  Identities=20%  Similarity=0.305  Sum_probs=86.3

Q ss_pred             ccCCCcEEccceEECCCcEECCCcEEccCcEE---------CCCcEECCCCEECCC----CEECCCcEECCCcEEeceEE
Q 030076           42 WHNGGGIFHQSACIDSTVLIEVGAIVHSKAVL---------GANVCIGSGTVVGPA----VTIGQSTNIGFNVALSNCII  108 (183)
Q Consensus        42 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i---------g~~~~I~~~~~I~~~----~~Ig~~~~Ig~~~~i~~~~I  108 (183)
                      .++++.+|++.+.|.+++.|+++|.|++++.|         |.++.+++++.+...    +++++++.+..++.+.++.|
T Consensus        14 ~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i   93 (172)
T d1xhda_          14 KIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHI   93 (172)
T ss_dssp             EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEE
T ss_pred             EECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeeccccccc
Confidence            45666677777777777777777777776655         455555555555332    58899999999999999999


Q ss_pred             CCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076          109 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI  174 (183)
Q Consensus       109 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I  174 (183)
                      +++++|+.++.+.+                    ++.||++|+|+++++|.++    +.|++++++
T Consensus        94 ~~~~~ig~~~~i~~--------------------gv~IG~~~~IgagsvV~~~----~~i~~~~v~  135 (172)
T d1xhda_          94 KKDALIGMGSIILD--------------------GAEIGEGAFIGAGSLVSQG----KKIPPNTLA  135 (172)
T ss_dssp             CTTCEECTTCEECT--------------------TCEECTTCEECTTCEECTT----CEECTTEEE
T ss_pred             ccceEEecccEeeC--------------------CcEEcCcccccceEEEeeC----eEECCCeEE
Confidence            99999999999998                    8999999999999999977    777777766

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.1e-15  Score=110.04  Aligned_cols=35  Identities=34%  Similarity=0.497  Sum_probs=29.2

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ++.||++||||++++|.+|    ++||++|+|+++|+|.
T Consensus       128 ~v~Ig~~~~iG~~~~I~~G----v~IG~~~vIgagsvV~  162 (182)
T d1ocxa_         128 PVTIGNNVWIGGRAVINPG----VTIGDNVVVASGAVVT  162 (182)
T ss_dssp             CEEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             eeEECceEeeCceeeccCc----EEECCCCEECCCCEEc
Confidence            7788888888888888887    8888888888888874

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.61  E-value=4.4e-15  Score=105.89  Aligned_cols=35  Identities=43%  Similarity=0.511  Sum_probs=24.3

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .+.||++++||+++++.++    ++||++|+|+++++|.
T Consensus        88 ~~~Ig~~~~ig~~~~i~~g----v~Ig~~~vIgagsvV~  122 (173)
T d1v3wa_          88 GAKVGNYVIIGISSVILDG----AKIGDHVIIGAGAVVP  122 (173)
T ss_dssp             SCEECSSEEECTTCEECTT----CEECSSEEECTTCEEC
T ss_pred             eeecCCcccccceeeecCC----EEEcceeEEcCCcEEe
Confidence            6677777777777777766    6666666666666664

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=4.2e-15  Score=108.16  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=34.2

Q ss_pred             eeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          141 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       141 ~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      ..++.|++++|+|.++.+.++    ++||++|+|+++++|.
T Consensus       141 ~~~~~Ig~~v~iG~~~~I~~~----v~IG~~s~IgagsvV~  177 (201)
T d2oi6a1         141 KFKTIIGDDVFVGSDTQLVAP----VTVGKGATIAAGTTVT  177 (201)
T ss_dssp             BCCEEECTTCEECTTCEEESS----EEECTTCEECTTCEEC
T ss_pred             ccccEeCCcEEEeEeeeEcCC----cEECCCCEECCCCEEe
Confidence            347899999999999999988    9999999999999984

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.2e-15  Score=94.85  Aligned_cols=55  Identities=25%  Similarity=0.483  Sum_probs=36.2

Q ss_pred             EccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEEC
Q 030076           67 VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG  121 (183)
Q Consensus        67 i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~  121 (183)
                      |.+++.||+++.|+++++|+++++||++|.|+++|.|.++.|++++.|++++.+.
T Consensus        11 I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~   65 (78)
T d1fxja1          11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVE   65 (78)
T ss_dssp             EEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEE
T ss_pred             EeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEE
Confidence            4455566666666666666666666666777777776666677777776666665

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.59  E-value=1.9e-14  Score=107.50  Aligned_cols=78  Identities=24%  Similarity=0.289  Sum_probs=41.7

Q ss_pred             CCEECCCcEECCCcEEec-eEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCe
Q 030076           88 AVTIGQSTNIGFNVALSN-CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT  166 (183)
Q Consensus        88 ~~~Ig~~~~Ig~~~~i~~-~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~  166 (183)
                      +++||++|.|-.++.|.. +.||++|+|++|+.|+..            +...+..+++|+++|+||+++.+-.|    +
T Consensus       131 gA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGv------------lep~~~~p~iIed~~~IGa~s~v~eg----v  194 (274)
T d3tdta_         131 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV------------LEPLQANPTIIEDNCFIGARSEVVEG----V  194 (274)
T ss_dssp             TCEECTTCEECTTEEECTTCEECTTCEECTTCEECCS------------BTTBCSSCCEECTTCEECTTCEECTT----C
T ss_pred             ccEEcCCcEEcccceecceeEECCCeEECCCcEEEec------------cccCCCCCcEEecCcEeccCceEecC----E
Confidence            333444444444444432 245566666666666531            11112236666666666666666666    6


Q ss_pred             EECCCCEECCCCeEe
Q 030076          167 VIGDHSKIDNLVQVG  181 (183)
Q Consensus       167 ~Ig~~~~I~~~~~v~  181 (183)
                      .||++|+|++|++|+
T Consensus       195 ~Vg~~avi~~gv~i~  209 (274)
T d3tdta_         195 IVEEGSVISMGVYLG  209 (274)
T ss_dssp             EECTTCEECTTCEEC
T ss_pred             EecCceEeccceEEe
Confidence            666666666666664

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.59  E-value=2.9e-15  Score=102.77  Aligned_cols=103  Identities=17%  Similarity=0.293  Sum_probs=66.7

Q ss_pred             eEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEE------------------CCCcEECCCcEEeceEECCCCEE
Q 030076           53 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTI------------------GQSTNIGFNVALSNCIIGDSCII  114 (183)
Q Consensus        53 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~I------------------g~~~~Ig~~~~i~~~~I~~~~~I  114 (183)
                      +.|++++.|. ++.+ .+++||++|.|++++.|++++.+                  ++++.|+++|.|.+++|+++|.|
T Consensus        15 s~Ig~g~~I~-~~~i-~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~I   92 (135)
T d1yp2a1          15 SVIGEGCVIK-NCKI-HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARI   92 (135)
T ss_dssp             EEECTTCEEE-EEEE-ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEE
T ss_pred             CEECCCCEEe-CCEE-eccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCEE
Confidence            4455555553 2222 35566666666666666555333                  34577888888888888888888


Q ss_pred             CCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeE
Q 030076          115 HNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQV  180 (183)
Q Consensus       115 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v  180 (183)
                      |+++.+.+                    .+.+.+.+.++.++.+..|   .++||+++.|++|++|
T Consensus        93 G~g~~i~~--------------------~~~~~~~~~~~~~~~i~~g---~vvIg~~~~I~~g~vI  135 (135)
T d1yp2a1          93 GDNVKIIN--------------------KDNVQEAARETDGYFIKSG---IVTVIKDALIPSGIII  135 (135)
T ss_dssp             CTTCEECC--------------------SSCCSCEEEGGGTEEEETT---EEEECTTCEECTTCBC
T ss_pred             CCCcEECC--------------------CcccccceeeCCCEEECCC---eEEECCCCEECcCcCC
Confidence            88888876                    4555555555555555544   2568888888888764

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.57  E-value=7.1e-15  Score=109.80  Aligned_cols=96  Identities=17%  Similarity=0.248  Sum_probs=75.3

Q ss_pred             CCcEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEe---------ceEECCCCEEC
Q 030076           45 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS---------NCIIGDSCIIH  115 (183)
Q Consensus        45 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~---------~~~I~~~~~Ig  115 (183)
                      ++..+..+++|++++.+. .+.|.-+++||++++|..++.|+..+.||++|+|+.++.|.         +++|+++|+||
T Consensus       107 Pga~VR~GayI~~~vVlm-ps~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IG  185 (274)
T d3tdta_         107 PPATVRQGAFIARNTVLM-PSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIG  185 (274)
T ss_dssp             TTCEEBTTCEECTTCEEC-SEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEEC
T ss_pred             CCceeccCcEECCCcEEe-eeEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEec
Confidence            344445555555555444 34556677788888888888888788888888888888884         57899999999


Q ss_pred             CCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCC
Q 030076          116 NGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG  161 (183)
Q Consensus       116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g  161 (183)
                      +++.+..                    ++.|+++++|++|+++.+.
T Consensus       186 a~s~v~e--------------------gv~Vg~~avi~~gv~i~~~  211 (274)
T d3tdta_         186 ARSEVVE--------------------GVIVEEGSVISMGVYLGQS  211 (274)
T ss_dssp             TTCEECT--------------------TCEECTTCEECTTCEECTT
T ss_pred             cCceEec--------------------CEEecCceEeccceEEecc
Confidence            9999987                    9999999999999999876

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=3.8e-14  Score=103.22  Aligned_cols=95  Identities=28%  Similarity=0.376  Sum_probs=68.3

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEE--CCCCEECCCcEECCCcEEe-------------------ceE
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV--GPAVTIGQSTNIGFNVALS-------------------NCI  107 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I--~~~~~Ig~~~~Ig~~~~i~-------------------~~~  107 (183)
                      ++++++|++++.+..+    .++.||+++.|+.+|+|  ...++||++|.|++++.|.                   .++
T Consensus        57 iG~~~~I~p~~~i~~G----~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~  132 (200)
T d1krra_          57 VGENAWVEPPVYFSYG----SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPIT  132 (200)
T ss_dssp             CCSSCEECSCEEESCS----TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEE
T ss_pred             CCCCCEEcCCEEEecC----CccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEE
Confidence            5566666666655322    34455555555555555  2345777777777777772                   468


Q ss_pred             ECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeE
Q 030076          108 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV  167 (183)
Q Consensus       108 I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~  167 (183)
                      |+++|+||.++.|.+                    ++.||++|.|+++++|.+.+++.++
T Consensus       133 Igd~v~IG~~~~I~~--------------------Gv~IG~~~vIgagSvV~kdvp~~~i  172 (200)
T d1krra_         133 IGNNVWIGSHVVINP--------------------GVTIGDNSVIGAGSIVTKDIPPNVV  172 (200)
T ss_dssp             ECTTCEECTTCEECT--------------------TCEECTTCEECTTCEECSCBCTTEE
T ss_pred             EccCcccceeeeccc--------------------ccccCCCcEEeCCCEEeeEcCCCcE
Confidence            999999999999998                    8999999999999999887544433

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.55  E-value=1e-15  Score=112.13  Aligned_cols=39  Identities=31%  Similarity=0.250  Sum_probs=35.5

Q ss_pred             ceeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          140 QLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       140 ~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      ..+++.||++|+||++++|.+|    ++||++|+|+++|+|.+
T Consensus       110 i~g~v~IGd~v~IG~~~~I~~g----v~IG~~~~IgagSvV~k  148 (203)
T d1mr7a_         110 IKGDTIIGNDVWIGKDVVIMPG----VKIGDGAIVAANSVVVK  148 (203)
T ss_dssp             CCCCEEECSSCEECTTCEECTT----CEECTTCEECTTCEECS
T ss_pred             CccCeEECCEEEECCceeEEeE----EEEcCCCEEecCeEEee
Confidence            3468999999999999999998    99999999999999853

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.54  E-value=1.2e-13  Score=99.70  Aligned_cols=70  Identities=24%  Similarity=0.305  Sum_probs=28.7

Q ss_pred             EccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEE
Q 030076           49 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI  120 (183)
Q Consensus        49 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i  120 (183)
                      |.+++.|++++.|+++++|++++.||++|.|+++++|+ ++.||+++.|... .+....+++++.|++++.+
T Consensus        11 I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~-~~~IG~~~~I~~~-~i~~~~~g~~~~Ig~~~~i   80 (196)
T d1g97a1          11 IDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVV-DSTIGAGAVITNS-MIEESSVADGVIVGPYAHI   80 (196)
T ss_dssp             ECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEE-SCEECTTCEECSC-EEESCEECTTCEECSSCEE
T ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCceEcCceEee-eeecccCcccccc-ceeeccccCcceeecceec
Confidence            33444444444444444444444444444444444442 2344444444322 1222334444444444444

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=3.9e-14  Score=100.86  Aligned_cols=47  Identities=32%  Similarity=0.427  Sum_probs=34.3

Q ss_pred             eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCeEECCCCEE
Q 030076          104 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKI  174 (183)
Q Consensus       104 ~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I  174 (183)
                      ..+.|+++|+|+.++.+.+                    ++.||++|+|+++++|.++    +.|++++++
T Consensus        87 ~~~~Ig~~~~ig~~~~i~~--------------------gv~Ig~~~vIgagsvV~~~----~~i~~~~iv  133 (173)
T d1v3wa_          87 HGAKVGNYVIIGISSVILD--------------------GAKIGDHVIIGAGAVVPPN----KEIPDYSLV  133 (173)
T ss_dssp             ESCEECSSEEECTTCEECT--------------------TCEECSSEEECTTCEECTT----CEECTTEEE
T ss_pred             eeeecCCcccccceeeecC--------------------CEEEcceeEEcCCcEEeCC----eEeCCCCEE
Confidence            3577777777777777776                    7777777777777777766    666666655

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2.9e-14  Score=88.40  Aligned_cols=70  Identities=21%  Similarity=0.310  Sum_probs=63.5

Q ss_pred             cEEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCC
Q 030076           47 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNG  117 (183)
Q Consensus        47 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~  117 (183)
                      ..+..++.|++++.|++++.|++++.||++|.|+++|+|. +++|++++.|++++.|++++|+++|.|||.
T Consensus         9 ~~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~-~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGPf   78 (78)
T d1fxja1           9 FDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIK-NSVIGDDCEISPYTVVEDANLAAACTIGPF   78 (78)
T ss_dssp             EEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECTTCEEESEEECTTCEESCC
T ss_pred             EEEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEe-cCEECCCCEEcCCcEEECCEECCCCEECcC
Confidence            3467778899999999999999999999999999999996 569999999999999999999999999873

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=5.4e-14  Score=101.01  Aligned_cols=49  Identities=18%  Similarity=0.348  Sum_probs=39.6

Q ss_pred             ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCe-EECCCCE
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT-VIGDHSK  173 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~-~Ig~~~~  173 (183)
                      .++|+++|+||.++.|.+                    ++.||+++.||++++|.+..++++ +.|..|.
T Consensus       128 ~v~Ig~~~~iG~~~~I~~--------------------Gv~IG~~~vIgagsvV~kdvp~~~i~~G~PAk  177 (182)
T d1ocxa_         128 PVTIGNNVWIGGRAVINP--------------------GVTIGDNVVVASGAVVTKDVPDNVVVGGNPAR  177 (182)
T ss_dssp             CEEECTTCEECTTCEECT--------------------TCEECTTCEECTTCEECSCBCSSEEEETTTTE
T ss_pred             eeEECceEeeCceeeccC--------------------cEEECCCCEECCCCEEccCCCCCeEEEeeCCE
Confidence            478999999999999998                    899999999999999998754443 3444443

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.42  E-value=1.8e-12  Score=96.74  Aligned_cols=50  Identities=26%  Similarity=0.284  Sum_probs=39.9

Q ss_pred             ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCC-CCeEECCCCEE
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSW-RDTVIGDHSKI  174 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~-~~~~Ig~~~~I  174 (183)
                      +++|+++|+||+|++|..                    ++.||+++.||+|++|.++++ ..++.|..+.+
T Consensus       189 ~~~Ig~~v~IGaga~Ilg--------------------~v~IG~~a~IgAgsvV~kdVp~~~vv~G~PAr~  239 (241)
T d1ssqa_         189 HPKVREGVMIGAGAKILG--------------------NIEVGKYAKIGANSVVLNPVPEYATAAGVPARI  239 (241)
T ss_dssp             SCEECTTCEECTTCEEES--------------------SCEECTTCEECTTCEECSCBCTTCEEETTTTEE
T ss_pred             CCccCCCeEECCCCEEcC--------------------CcEECCCCEECCCCEECCCCCCCCEEEecCcEE
Confidence            578999999999998877                    899999999999999998863 44555555543

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.39  E-value=2.2e-13  Score=99.44  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=35.2

Q ss_pred             ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCCe
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDT  166 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~~  166 (183)
                      .++|+++|+||.++.|.+                    ++.||+++.|+++++|.+.+++++
T Consensus       113 ~v~IGd~v~IG~~~~I~~--------------------gv~IG~~~~IgagSvV~kdv~~~~  154 (203)
T d1mr7a_         113 DTIIGNDVWIGKDVVIMP--------------------GVKIGDGAIVAANSVVVKDIAPYM  154 (203)
T ss_dssp             CEEECSSCEECTTCEECT--------------------TCEECTTCEECTTCEECSCBCTTE
T ss_pred             CeEECCEEEECCceeEEe--------------------EEEEcCCCEEecCeEEeeeCCCCE
Confidence            478999999999999987                    899999999999999987644333

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.38  E-value=6.4e-13  Score=97.26  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             eeceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEe
Q 030076          141 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVG  181 (183)
Q Consensus       141 ~~~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~  181 (183)
                      .++++||++|+||++++|.++    ++||++|+|+++|+|.
T Consensus       106 ~g~v~Igd~v~IG~~s~I~~g----v~IG~~~vIgagSvVt  142 (208)
T d1xata_         106 AGDTLIGHEVWIGTEAMFMPG----VRVGHGAIIGSRALVT  142 (208)
T ss_dssp             CCCEEECTTCEECTTCEECTT----CEECTTCEECTTCEEC
T ss_pred             cCCEEEcCCeEECccccccCC----eEeCCCCEEeCceEEe
Confidence            457999999999999999988    9999999999999985

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.36  E-value=1.5e-12  Score=88.91  Aligned_cols=54  Identities=17%  Similarity=0.011  Sum_probs=37.1

Q ss_pred             EECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCC--CCCeE------ECCC-CEECCC
Q 030076          107 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS--WRDTV------IGDH-SKIDNL  177 (183)
Q Consensus       107 ~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~--~~~~~------Ig~~-~~I~~~  177 (183)
                      .+++++.|++++.|.                     +++|+++|+||+++++..+.  ++.+.      ++++ ++|+.+
T Consensus        68 ~i~~~v~Ig~~~~I~---------------------~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~  126 (135)
T d1yp2a1          68 KGSVPIGIGKNCHIK---------------------RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKD  126 (135)
T ss_dssp             TTCCCSEECTTCEEE---------------------SEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTT
T ss_pred             EcCCCCEECcceEec---------------------cceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCC
Confidence            345567788888886                     79999999999999997664  33344      4444 445566


Q ss_pred             CeEe
Q 030076          178 VQVG  181 (183)
Q Consensus       178 ~~v~  181 (183)
                      ++|+
T Consensus       127 ~~I~  130 (135)
T d1yp2a1         127 ALIP  130 (135)
T ss_dssp             CEEC
T ss_pred             CEEC
Confidence            5553

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.26  E-value=2.1e-11  Score=90.89  Aligned_cols=36  Identities=25%  Similarity=0.208  Sum_probs=33.3

Q ss_pred             ceEECCCCEECCCcEEcCCCCCCeEECCCCEECCCCeEee
Q 030076          143 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVGF  182 (183)
Q Consensus       143 ~~~Ig~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~~v~~  182 (183)
                      ..+||++|+||+|++|.++    ++||++++|++|++|.+
T Consensus       189 ~~~Ig~~v~IGaga~Ilg~----v~IG~~a~IgAgsvV~k  224 (241)
T d1ssqa_         189 HPKVREGVMIGAGAKILGN----IEVGKYAKIGANSVVLN  224 (241)
T ss_dssp             SCEECTTCEECTTCEEESS----CEECTTCEECTTCEECS
T ss_pred             CCccCCCeEECCCCEEcCC----cEECCCCEECCCCEECC
Confidence            6889999999999999988    99999999999999853

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.19  E-value=7.1e-11  Score=86.15  Aligned_cols=49  Identities=18%  Similarity=0.270  Sum_probs=40.8

Q ss_pred             ceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEECCCCEECCCcEEcCCCCCC-eEECCCCE
Q 030076          105 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRD-TVIGDHSK  173 (183)
Q Consensus       105 ~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~g~~~~-~~Ig~~~~  173 (183)
                      +++|+++|+||.++.|.+                    ++.||++|+||++++|...+++. .+.|..|.
T Consensus       108 ~v~Igd~v~IG~~s~I~~--------------------gv~IG~~~vIgagSvVtkdvp~~si~~G~PAk  157 (208)
T d1xata_         108 DTLIGHEVWIGTEAMFMP--------------------GVRVGHGAIIGSRALVTGDVEPYAIVGGNPAR  157 (208)
T ss_dssp             CEEECTTCEECTTCEECT--------------------TCEECTTCEECTTCEECSCBCTTEEEETTTTE
T ss_pred             CEEEcCCeEECccccccC--------------------CeEeCCCCEEeCceEEeecCCcCcEEEecCCE
Confidence            589999999999999998                    89999999999999999876433 45555554

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=99.10  E-value=1.8e-09  Score=83.44  Aligned_cols=71  Identities=20%  Similarity=0.141  Sum_probs=39.6

Q ss_pred             ceEECCCcEECCCcEEccCcEECCCcEECCCCEE-----CCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076           52 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVV-----GPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        52 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I-----~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~  122 (183)
                      ++.+.+++.|..+++|.+++.|++++.|++++.|     .+++.|++++.|+.++.+.++.+..++.+.+++.+..
T Consensus        63 nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~i~g  138 (320)
T d2f9ca1          63 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILA  138 (320)
T ss_dssp             TCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCEECC
T ss_pred             CcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcEEEC
Confidence            4555555555555555555555555555555444     4445555555555555555556666666666666654

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=2.7e-10  Score=82.16  Aligned_cols=74  Identities=20%  Similarity=0.321  Sum_probs=62.2

Q ss_pred             EEccceEECCCcEECCCcEEccCcEECCCcEECCCCEECCCCEECCCcEECCCcEEeceEECCCCEECCCcEECC
Q 030076           48 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ  122 (183)
Q Consensus        48 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~I~~~~~Ig~~~~i~~  122 (183)
                      .|++...|+++++|+++++|++++.||++|.|+++++|... .++.++.+...+...++.+++++.++.++.+..
T Consensus        10 ~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~-~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~   83 (201)
T d2oi6a1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNS-VIGDDCEISPYTVVEDANLAAACTIGPFARLRP   83 (201)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESC-EECTTCEECSSCEEESCEECTTCEECSSEEECT
T ss_pred             EECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeee-ccCCceeeeeeecccccccccccccCccccccc
Confidence            57777888888888888888888899999999999988655 777778888888888888888888888888765

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.77  E-value=4.5e-08  Score=75.38  Aligned_cols=93  Identities=14%  Similarity=0.130  Sum_probs=50.5

Q ss_pred             cCcEECCCcEECCCCEECCCCEECCCcEECCCcEE-eceEECCCCEECCCcEECCCCCceeeccCCccccCCceeceEEC
Q 030076           69 SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIG  147 (183)
Q Consensus        69 ~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i-~~~~I~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig  147 (183)
                      ..+.++.++.|+.++.+...+.+..++.|+.++.| .++.|..++.|+.++.+....    ...         ...+.|+
T Consensus       204 ~~~~v~gn~~I~~~~~i~~~~~i~~~~~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~----v~i---------~~~~~I~  270 (320)
T d2f9ca1         204 DCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGP----ILL---------DDRVLIE  270 (320)
T ss_dssp             SSCEECSSCEEECCSSTTCCCEECSSCEECSSCEEESSEEECTEEEECSSCEEESSS----EEE---------CSEEEEC
T ss_pred             ccccccccchhcCCeeeecccccccccccCcceeeeeeccccCceEECCCeEEeCCe----eEE---------CCceEEC
Confidence            34444555555555555555556666666666665 334555555555555554210    000         0045666


Q ss_pred             CCCEECCCcEEcCCCCCCeEECCCCEECCCC
Q 030076          148 NHVEIGANSCIDRGSWRDTVIGDHSKIDNLV  178 (183)
Q Consensus       148 ~~~~Ig~~~~v~~g~~~~~~Ig~~~~I~~~~  178 (183)
                      ++++|+.++.|.+.    +.|++++.|++.+
T Consensus       271 ~~a~I~g~~~I~~~----v~i~~~a~v~a~~  297 (320)
T d2f9ca1         271 GHACIQGEILIERQ----VEISGRAAVIAFD  297 (320)
T ss_dssp             SSCEEESSEEECSE----EEECSSCEEECCS
T ss_pred             CCcEEcccCEEeCC----CEECCCeEEEEec
Confidence            66666666666655    7777777776644