Citrus Sinensis ID: 030083

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MLTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPSLLLFVLGFVVLKYY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHccccccEEEEEEccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHEEcccccccccccHHHHHHHHHHccccccEEEEEcccccccccccHHHHHcccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlttftpcmnfltnssgsgtspssdccgslknltgnslDCVCLIVtasvpfrvpinrtlaislpracnmpsvpvqckasgaplpapgpaslgsapspgespaaspkapvvpqptpsgeapesdttpgltppsppspdvgsgsgtptgtpasrpdltpsaampsyifspSLLLFVLGFVVLKYY
Flexible Loop (DISEMBL)
MLTTFTPCMNFltnssgsgtspsSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPSLLLFVLGFVVLKYY
Low Complexity Region (SEG)
MLTTFTPCMNFLTNssgsgtspssdccgsLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVPVQCkasgaplpapgpaslgsapspgespaaspkapvvpqpTPSGEAPEsdttpgltppsppspdvgsgsgtptgtpASRPDLTPSAAMPSYIFSPSlllfvlgfvvlKYY
Disordered region (IsUnstruct)
*************************CCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSV******************************************************************************************SYIFSPSLLLFVLGFVVLKY*
Disordered Region (DISOPRED)
MLTTFTPCMNFLTN************CGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSV************************************************************************************************SLLLFVLGFVVLKYY
Disordered Region (DISEMBL)
MLTTFTPCMNFLTNS***********CGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVPVQCKASGAPLPAP****************************************************************SRPDLTPSAAMPSYIFSPSLLLFVLGFVVLKYY
Disordered Region (DISPRO)
MLTTFTPCMNFLTNSS*SGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVPVQCKA**************************************************************************************IFSPSLLLFVLGFVVLKYY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPSLLLFVLGFVVLKYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
356534201	227	PREDICTED: non-specific lipid-transfer p	0.972	0.784	0.607	3e-48
255552121	206	lipid binding protein, putative [Ricinus	0.923	0.820	0.668	1e-47
225432724	217	PREDICTED: uncharacterized protein LOC10	0.972	0.820	0.607	6e-43
297737081	195	unnamed protein product [Vitis vinifera]	0.972	0.912	0.607	1e-42
351726126	202	uncharacterized protein LOC100527734 pre	0.885	0.801	0.558	4e-41
388503524	208	unknown [Lotus japonicus]	0.918	0.807	0.516	5e-39
224112975	196	predicted protein [Populus trichocarpa]	0.863	0.806	0.576	7e-39
357480989	212	hypothetical protein MTR_5g006940 [Medic	0.939	0.811	0.535	3e-37
359479645	214	PREDICTED: uncharacterized protein LOC10	0.961	0.822	0.551	7e-37
296085222	178	unnamed protein product [Vitis vinifera]	0.961	0.988	0.551	3e-36

>gi|356534201|ref|XP_003535646.1| PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Glycine max]

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 138/191 (72%), Gaps = 13/191 (6%)

Query: 3   TTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAIS 62
           T FTPCMNFLTNSSG+GTSP+++CC +LK+LT   +DC+CLIVT SVPFR+P+NRTLAIS
Sbjct: 40  TFFTPCMNFLTNSSGNGTSPTTECCSALKSLTSGGMDCLCLIVTGSVPFRIPVNRTLAIS 99

Query: 63  LPRACNMPSVPVQCKASGAPLPAPGPASLG--------SAPSPGESPAASPKAP-VVPQP 113
           LPRACNM  VPVQCKASG+PLPAPGP SLG         +   G +P  SP+A  V+P P
Sbjct: 100 LPRACNMAGVPVQCKASGSPLPAPGPVSLGPSPSPASAPSAPSGFTPTPSPQASTVLPSP 159

Query: 114 TPSGEAPESD-TTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPSLLL 172
           T    AP+SD TTP L  P  PS D G+ S  PTG  + R +L+PS+AM SY  SPSLL 
Sbjct: 160 TSPSLAPQSDTTTPSLLTPPSPSADSGNPS-VPTG--SGRTNLSPSSAMTSYSVSPSLLF 216

Query: 173 FVLGFVVLKYY 183
             LGF +LKYY
Sbjct: 217 IALGFALLKYY 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552121|ref|XP_002517105.1| lipid binding protein, putative [Ricinus communis] gi|223543740|gb|EEF45268.1| lipid binding protein, putative [Ricinus communis]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/184 (66%), Positives = 140/184 (76%), Gaps = 15/184 (8%)

Query: 1   MLTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLA 60
           +L+ FTPCM+FLTNS+ +GTSP+SDCC SLKNLTGN +DC+CLIVT SVPF++PINRTLA
Sbjct: 37  LLSVFTPCMSFLTNSTANGTSPTSDCCSSLKNLTGNGMDCLCLIVTGSVPFQIPINRTLA 96

Query: 61  ISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAP 120
           ISLPRACNM  VPVQCK         GPASLG  PSP  SP+ASPKA VVP+PTPS   P
Sbjct: 97  ISLPRACNMAGVPVQCK---------GPASLGPTPSPRISPSASPKASVVPEPTPSTSPP 147

Query: 121 ESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLT-PSAAMPSYIFSPSLLLFVLGFVV 179
           ES TTP LTP SP        +G PT T  SRP LT PSAA+PSY  SPS+LLF +GF+V
Sbjct: 148 ESSTTPVLTPSSP-----TVDTGAPTSTTGSRPVLTPPSAAIPSYSISPSVLLFAIGFLV 202

Query: 180 LKYY 183
           LKYY
Sbjct: 203 LKYY 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432724|ref|XP_002278974.1| PREDICTED: uncharacterized protein LOC100257872 [Vitis vinifera]

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/186 (60%), Positives = 136/186 (73%), Gaps = 8/186 (4%)

Query: 1   MLTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLA 60
           M+++FTPC+NF+TNSSG+GTSP++DCC +L++LT  S+DC+CLIVT SVPF++PINRTLA
Sbjct: 37  MISSFTPCINFVTNSSGNGTSPTADCCNALRSLTSTSMDCLCLIVTGSVPFQMPINRTLA 96

Query: 61  ISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPA---ASPKAPVVPQPTPSG 117
           ISLPRACN  SVPVQCKA+GAP+PAPGPA+LG   SP  +P+    SPKA  VP  T   
Sbjct: 97  ISLPRACNTASVPVQCKATGAPVPAPGPAALGPTLSPQATPSPTGPSPKASSVPGSTSPA 156

Query: 118 EAPESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPSLLLFVLGF 177
            AP SDTTP LTP SP        S  PT T  SRP LTPSA       SPSL+LFVLG 
Sbjct: 157 LAPGSDTTPSLTPDSP-----TVDSDAPTTTTGSRPVLTPSAGNRPQSLSPSLVLFVLGI 211

Query: 178 VVLKYY 183
           + + YY
Sbjct: 212 IFIMYY 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737081|emb|CBI26282.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/186 (60%), Positives = 136/186 (73%), Gaps = 8/186 (4%)

Query: 1   MLTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLA 60
           M+++FTPC+NF+TNSSG+GTSP++DCC +L++LT  S+DC+CLIVT SVPF++PINRTLA
Sbjct: 15  MISSFTPCINFVTNSSGNGTSPTADCCNALRSLTSTSMDCLCLIVTGSVPFQMPINRTLA 74

Query: 61  ISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPA---ASPKAPVVPQPTPSG 117
           ISLPRACN  SVPVQCKA+GAP+PAPGPA+LG   SP  +P+    SPKA  VP  T   
Sbjct: 75  ISLPRACNTASVPVQCKATGAPVPAPGPAALGPTLSPQATPSPTGPSPKASSVPGSTSPA 134

Query: 118 EAPESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPSLLLFVLGF 177
            AP SDTTP LTP SP        S  PT T  SRP LTPSA       SPSL+LFVLG 
Sbjct: 135 LAPGSDTTPSLTPDSP-----TVDSDAPTTTTGSRPVLTPSAGNRPQSLSPSLVLFVLGI 189

Query: 178 VVLKYY 183
           + + YY
Sbjct: 190 IFIMYY 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726126|ref|NP_001236604.1| uncharacterized protein LOC100527734 precursor [Glycine max] gi|255633076|gb|ACU16893.1| unknown [Glycine max]

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/181 (55%), Positives = 126/181 (69%), Gaps = 19/181 (10%)

Query: 5   FTPCMNFLTNSSGSG--TSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAIS 62
           F PCMNFLTNSSG+G  TSP+++CC S+K+LT   +DC+CLI+T +VPFR+PINRTLAIS
Sbjct: 39  FNPCMNFLTNSSGNGNGTSPTAECCNSIKSLTSGGMDCLCLIMTGNVPFRIPINRTLAIS 98

Query: 63  LPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPES 122
           LPR CN+P +P+QCK+S  PLPAPGPA+ G + SP     +   + V+P P+    AP S
Sbjct: 99  LPRTCNLPRLPLQCKSS--PLPAPGPAAFGPSLSPSAPSLSPEASSVLPSPS---LAPLS 153

Query: 123 DTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPSLLLFVLGFVVLKY 182
           D TP L  PS  S   GSG          R DLTPS+AMPSY F PS++L  LGF VLK+
Sbjct: 154 DITPPLLTPS--SATTGSG----------RSDLTPSSAMPSYRFLPSVVLIALGFAVLKH 201

Query: 183 Y 183
           Y
Sbjct: 202 Y 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503524|gb|AFK39828.1| unknown [Lotus japonicus]

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 96/186 (51%), Positives = 124/186 (66%), Gaps = 18/186 (9%)

Query: 3   TTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAIS 62
           T+FTPCM+FLTNSSG+GTSP+++CC S+K+LT    DC+CL+VT +VPF +PINRTLAIS
Sbjct: 36  TSFTPCMSFLTNSSGNGTSPTAECCDSIKSLTSGGRDCLCLVVTGNVPFSIPINRTLAIS 95

Query: 63  LPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAP-----VVPQPTPSG 117
           LPRAC +P VP+QCK SG+PLPAPGPASLG + SP  +P A+  +P      +P P    
Sbjct: 96  LPRACKLPGVPLQCKTSGSPLPAPGPASLGPSSSPESTPFATSPSPQGSSSALPSPVTPS 155

Query: 118 EAPESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPSLLLFVLGF 177
            AP   T P LTP             + + T + R +LTPS+A+P Y   PS +  V GF
Sbjct: 156 LAPSDSTPPLLTP-------------SSSTTGSGRSNLTPSSAVPPYSLFPSFVFIVFGF 202

Query: 178 VVLKYY 183
            V K+Y
Sbjct: 203 AVFKHY 208

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112975|ref|XP_002332676.1| predicted protein [Populus trichocarpa] gi|222836470|gb|EEE74877.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 106/184 (57%), Positives = 124/184 (67%), Gaps = 26/184 (14%)

Query: 1   MLTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLA 60
           +L TF PCM FLT+S+ +G+SP++ CCGSLKNLT + +DC+CL+VT SVPF VPINRTLA
Sbjct: 37  VLATFAPCMTFLTSSTANGSSPTAGCCGSLKNLTSDGMDCLCLVVTGSVPFGVPINRTLA 96

Query: 61  ISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAP 120
           ISLPRACNMP VPVQC+A+GAP+PAP                    A VVP+PTPS   P
Sbjct: 97  ISLPRACNMPGVPVQCEATGAPIPAP--------------------ASVVPEPTPSALPP 136

Query: 121 ESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLT-PSAAMPSYIFSPSLLLFVLGFVV 179
            S TTP L PPS         SG P  T  S P LT PSA++PS   SPSLLLF LGFV+
Sbjct: 137 ASGTTPLLAPPSS-----TGDSGAPASTTGSHPILTPPSASVPSDSLSPSLLLFALGFVL 191

Query: 180 LKYY 183
            KYY
Sbjct: 192 FKYY 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480989|ref|XP_003610780.1| hypothetical protein MTR_5g006940 [Medicago truncatula] gi|355512115|gb|AES93738.1| hypothetical protein MTR_5g006940 [Medicago truncatula]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/183 (53%), Positives = 133/183 (72%), Gaps = 11/183 (6%)

Query: 3   TTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAIS 62
           +T +PC++FLTNSSG+GTSP++DCC ++K LT  S DC+CLI T +VPF +PINRTLAIS
Sbjct: 39  STISPCLSFLTNSSGNGTSPTADCCNAIKTLTSGSKDCMCLIATGNVPFALPINRTLAIS 98

Query: 63  LPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKA-PVVPQPTPSGEAPE 121
           LPRACN+P VP+QCK SG+PLPAPGPAS G + SP  +P+ SP+A  ++P P     +P+
Sbjct: 99  LPRACNLPGVPLQCKTSGSPLPAPGPASFGPSLSPASTPSLSPQASSILPSPVTPSLSPQ 158

Query: 122 SDTTPGLTPPSPPSPDVGSGSGTPTGTPAS-RPDLTPSAAMPSYIFSPSLLLFVLGFVVL 180
            +TT  L+P +  +PD+      P+ TP S R DLTPS+A  S  +S  L + V+GF +L
Sbjct: 159 PETTNPLSPSA--NPDI------PSATPGSGRSDLTPSSAG-SSSYSLLLSVLVMGFSIL 209

Query: 181 KYY 183
           K+Y
Sbjct: 210 KHY 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479645|ref|XP_003632315.1| PREDICTED: uncharacterized protein LOC100852532 [Vitis vinifera]

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 102/185 (55%), Positives = 124/185 (67%), Gaps = 9/185 (4%)

Query: 1   MLTTFTPCMNFLTNS-SGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTL 59
           M+++FTPC+NF+T S SG+G+SP++ CC SL++LT  ++DC CLI+T SVP ++PINRTL
Sbjct: 37  MISSFTPCLNFITGSTSGNGSSPTAGCCSSLRSLTSTTMDCACLIITGSVPLQLPINRTL 96

Query: 60  AISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEA 119
           AISLPRACNM SVP+QCKASG PLPAPGP  LG    P  + A                A
Sbjct: 97  AISLPRACNMGSVPIQCKASGTPLPAPGPVLLGPTLPP-PAAAPLSPRASKAAAATLAPA 155

Query: 120 PESDTTPGLTPPSPPSPDVGSGSGTP-TGTPASRPDLTPSAAMPSYIFSPSLLLFVLGFV 178
           PE +T   L+P SPP       S TP T TP  RP LTPSA+ PSYI SP LLL VLG +
Sbjct: 156 PEPETAIELSPASPP-----VDSETPTTTTPGIRPVLTPSASNPSYISSP-LLLIVLGIM 209

Query: 179 VLKYY 183
            LK Y
Sbjct: 210 FLKCY 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085222|emb|CBI28717.3| unnamed protein product [Vitis vinifera]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/185 (55%), Positives = 124/185 (67%), Gaps = 9/185 (4%)

Query: 1   MLTTFTPCMNFLTNS-SGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTL 59
           M+++FTPC+NF+T S SG+G+SP++ CC SL++LT  ++DC CLI+T SVP ++PINRTL
Sbjct: 1   MISSFTPCLNFITGSTSGNGSSPTAGCCSSLRSLTSTTMDCACLIITGSVPLQLPINRTL 60

Query: 60  AISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEA 119
           AISLPRACNM SVP+QCKASG PLPAPGP  LG    P  + A                A
Sbjct: 61  AISLPRACNMGSVPIQCKASGTPLPAPGPVLLGPTLPP-PAAAPLSPRASKAAAATLAPA 119

Query: 120 PESDTTPGLTPPSPPSPDVGSGSGTP-TGTPASRPDLTPSAAMPSYIFSPSLLLFVLGFV 178
           PE +T   L+P SPP       S TP T TP  RP LTPSA+ PSYI SP LLL VLG +
Sbjct: 120 PEPETAIELSPASPP-----VDSETPTTTTPGIRPVLTPSASNPSYISSP-LLLIVLGIM 173

Query: 179 VLKYY 183
            LK Y
Sbjct: 174 FLKCY 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2828523	203	AT3G22620 [Arabidopsis thalian	0.415	0.374	0.526	1.1e-22
TAIR|locus:2201046	205	AT1G05450 "AT1G05450" [Arabido	0.398	0.356	0.552	6.7e-17
TAIR|locus:2039341	200	EDA4 "AT2G48140" [Arabidopsis	0.415	0.38	0.480	1.6e-15
TAIR|locus:2039366	183	AT2G48130 [Arabidopsis thalian	0.393	0.393	0.324	1.6e-06
TAIR|locus:2077001	170	AT3G22600 [Arabidopsis thalian	0.393	0.423	0.285	3.4e-05

TAIR|locus:2828523 AT3G22620 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 40/76 (52%), Positives = 51/76 (67%)

Query:     1 MLTTFTPCMNFLTNXXXXXXXXXXXXXXXLKNLTGNSLDCVCLIVTASVPFRVPINRTLA 60
             M+TT +PCM F+TN               L++LT   + C+CLIVT +VPF +PINRT A
Sbjct:    33 MMTTVSPCMGFITNSSSNGTSPSSDCCNSLRSLTTGGMGCLCLIVTGTVPFNIPINRTTA 92

Query:    61 ISLPRACNMPSVPVQC 76
             +SLPRACNMP VP+QC
Sbjct:    93 VSLPRACNMPRVPLQC 108

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2201046 AT1G05450 "AT1G05450" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 42/76 (55%), Positives = 50/76 (65%)

Query:     1 MLTTFTPCMNFLTNXXXXXXXXXXXXXXXLKNLTGNSLDCVCLIVTASVPFRVPINRTLA 60
             ML++ T C +FLT                LK+LTG  +DC+CLIVTA VP  +PINRTLA
Sbjct:    37 MLSSVTGCTSFLTGGGSFPTSDCCGA---LKSLTGTGMDCLCLIVTAGVPISIPINRTLA 93

Query:    61 ISLPRACNMPSVPVQC 76
             ISLPRAC +P VPVQC
Sbjct:    94 ISLPRACGIPGVPVQC 109

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2039341 EDA4 "AT2G48140" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 37/77 (48%), Positives = 47/77 (61%)

Query:     1 MLTTFTPCMNFLTNXXXXXXXXXXXXXXXLKNLTGNSLDCVCLIVTASVPFRVP-INRTL 59
             M++TFTPC+NF+T                LK LT   + C CLI+TA+VP     INRTL
Sbjct:    31 MISTFTPCLNFITGSSGGSVTPTAGCCDSLKTLTNTGMGCACLILTANVPLPTGFINRTL 90

Query:    60 AISLPRACNMPSVPVQC 76
             A++LPRAC M  VP+QC
Sbjct:    91 ALALPRACKMGGVPIQC 107

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009561 "megagametogenesis" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2039366 AT2G48130 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 25/77 (32%), Positives = 41/77 (53%)

Query:     2 LTTFTPCMNFLTNXXXXXXXXXXXXXXXLKNLTGNSLDCVCLIVTASVP-FRVPINRTLA 60
             LTT +PC++++T                L ++  +S  C+C  V + +P   + INRT A
Sbjct:    34 LTTLSPCLSYITGNSTTPSQPCCSR---LDSVIKSSPQCICSAVNSPIPNIGLNINRTQA 90

Query:    61 ISLPRACNMPSVPV-QC 76
             + LP ACN+ + P+ QC
Sbjct:    91 LQLPNACNIQTPPLTQC 107

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2077001 AT3G22600 [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 22/77 (28%), Positives = 39/77 (50%)

Query:     2 LTTFTPCMNFLTNXXXXXXXXXXXXXXXLKNLTGNSLDCVCLIVTAS-VPFRVPINRTLA 60
             L + +PC+N++T                L  +  +S DC+C ++        + +N+T A
Sbjct:    32 LISMSPCLNYITGNSTSPNQQCCNQ---LSRVVQSSPDCLCQVLNGGGSQLGINVNQTQA 88

Query:    61 ISLPRACNMPSVPV-QC 76
             + LPRACN+ + PV +C
Sbjct:    89 LGLPRACNVQTPPVSRC 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      183        92   0.00091  102 3  11 22  0.47    29
                                                     29  0.40    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  512 (54 KB)
  Total size of DFA:  100 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.63u 0.18s 7.81t   Elapsed:  00:00:00
  Total cpu time:  7.63u 0.18s 7.81t   Elapsed:  00:00:00
  Start:  Fri May 10 07:19:07 2013   End:  Fri May 10 07:19:07 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
pfam14368	95	pfam14368, LTP_2, Probable lipid transfer	2e-13
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	1e-10
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	2e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	3e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	4e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	0.002
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	0.002
pfam05616	502	pfam05616, Neisseria_TspB, Neisseria meningitidis	0.002
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.002
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.004
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.004

>gnl|CDD|222713 pfam14368, LTP_2, Probable lipid transfer

 Score = 62.5 bits (152), Expect = 2e-13
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 3  TTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAIS 62
           +  PC+           +PS  CC +LK      + C+C +VT+ +     IN T A++
Sbjct: 24 DSLLPCLG--YCYVNGTAAPSPACCAALKAAVKADVPCLCDLVTSPLAAGFGINLTRAVA 81

Query: 63 LPRACNMPSVPVQC 76
          LP+AC + S P +C
Sbjct: 82 LPKACGLTSPPSKC 95

The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 54.4 bits (131), Expect = 1e-10
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 5  FTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVP-INRTLAISL 63
            PC+++LT  +   T+P SDCC  LK++  +   C+C  +       +   N T A++L
Sbjct: 1  LAPCLSYLTGGA---TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALAL 57

Query: 64 PRACNM 69
          P AC +
Sbjct: 58 PAACGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 2  LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASV---PFRVPINRT 58
          L    PC+++L   S     PS  CC  L+ L  NS  C CL + A+V        +N  
Sbjct: 5  LLQLAPCLSYLVGGSRGAP-PSQQCCSQLRGL--NSAQCRCLALRAAVLGILEIPGLNAQ 61

Query: 59 LAISLPRACNMPSVPVQC 76
           A SLP AC +P     C
Sbjct: 62 NAASLPSACGVPPPYTDC 79

Length = 79

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 78  ASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPD 137
           A+ AP  AP PA+   A +   +PAA+P+    P P P   AP S         +P  P 
Sbjct: 402 AAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAP---APPSPAGNAPAGGAPSPPP 458

Query: 138 VGSGSGTPTGTPASRPDLTPSAA 160
             + S  P   PA+ P+ T + A
Sbjct: 459 AAAPSAQPAPAPAAAPEPTAAPA 481

Length = 824

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 1  MLTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLA 60
          +L    PC  +L    G    PS  CC  L+ L      C C  + A V     IN   A
Sbjct: 4  VLLKLAPCAGYLQ---GGCQVPSQQCCSQLRQL---QAQCRCTAIRAIVLGIEGINPQAA 57

Query: 61 ISLPRACNMPSVP 73
           SLP  C +    
Sbjct: 58 ASLPSMCGVNVPY 70

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 90  SLGSAPSPGESPAASPKAPVVPQPTPSGE-APESDTTPGLTPPSPPSPDVGSGSGTPTGT 148
             G APSP  SP    KAP    P P     P     PG  P   PSP           T
Sbjct: 377 DGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAP-------T 429

Query: 149 PASRPDLTPSAAMP 162
           P  +P +  SA +P
Sbjct: 430 PEQQPPVARSAPLP 443

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 86  PGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPDVGSGSGTP 145
           PG  +  +A +   + AAS  A       P+  AP         P +PP P   + +   
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA--PPAAAAPAAPPKPAAAAAAAAA 95

Query: 146 TGTPASRPDLTPSAA 160
              P +       AA
Sbjct: 96  PAAPPAAAAAAAPAA 110

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 21/113 (18%), Positives = 31/113 (27%), Gaps = 7/113 (6%)

Query: 48  SVPFRVPINRTLAISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKA 107
            +P  + +   L + +P        P +  A+      P PA   + P    +    PK 
Sbjct: 348 QLPLELAVIEALLVPVP-----APQPAKPTAAAPSPVRPTPAPS-TRPKAAAAANIPPKE 401

Query: 108 PVVPQPTPSGEAPESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAA 160
           PV    TP    P     P    P        +        P   P   P   
Sbjct: 402 PVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDE-KPKYTPPAPPKEE 453

Length = 585

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 22/102 (21%), Positives = 28/102 (27%), Gaps = 1/102 (0%)

Query: 45  VTASVPFRVPINRTLAISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAAS 104
             A     V                 S P    A+  P P   PA+   A +P  +PAA 
Sbjct: 386 AAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

Query: 105 PKAPVVP-QPTPSGEAPESDTTPGLTPPSPPSPDVGSGSGTP 145
             AP  P Q  P   A      P     S       + +   
Sbjct: 446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487

Length = 618

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 97  PGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPDV-GSGSGTPTGTPA 150
           PGE+ +    A   P+  P  EAP    TP    P+P +P   GSG  T    P 
Sbjct: 79  PGEAGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGGSGEATEVKMPE 133

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 70  PSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLT 129
           P+      A+ A  PA  PA+   A      PAA+  A   P+P  +  A  +   P   
Sbjct: 44  PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA-PPKPAAAAAAAAAPAAPPAA 102

Query: 130 PPSPPSPDVGSGSGT 144
             +            
Sbjct: 103 AAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 70  PSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTT-PGL 128
           P+     + + AP PAP P S       G +P+  P A    QP P+  A    T  P  
Sbjct: 423 PAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAP 482

Query: 129 TPPSPPSPDVGSGSGTPTGTPASRPD 154
            PP+ P+P     +      PA   D
Sbjct: 483 APPAAPAPAAAPAAPAAPAAPAGADD 508

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 14/80 (17%), Positives = 27/80 (33%)

Query: 78  ASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPD 137
           ++ AP  A   A+  ++       A +P AP    P  +  A            + P+  
Sbjct: 40  STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAP 99

Query: 138 VGSGSGTPTGTPASRPDLTP 157
             + +       A   ++TP
Sbjct: 100 PAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 72  VPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPT----PSGEAPESDTTPG 127
           V V    +G    AP  A+  SAP+P  SP ASP + +   P         + ES T   
Sbjct: 72  VMVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATA 131

Query: 128 LTPPSP--PSPDVGSGSGTPTGT 148
              PS   PS    + S    G+
Sbjct: 132 PESPSTSVPSSGSDAASTLVVGS 154

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 20/94 (21%), Positives = 27/94 (28%)

Query: 52  RVPINRTLAISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVP 111
             P   +L     R+    + P      G     P      S P+P  +P  +   P   
Sbjct: 373 HHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPA 432

Query: 112 QPTPSGEAPESDTTPGLTPPSPPSPDVGSGSGTP 145
            P PS E    D         PP+P        P
Sbjct: 433 TPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDP 466

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 16/86 (18%), Positives = 22/86 (25%), Gaps = 3/86 (3%)

Query: 78  ASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPD 137
           A+ A            AP+P  +P +               A      P   P + P P 
Sbjct: 418 AAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPT 477

Query: 138 VGSGSGTPTGTPASRPDLTPSAAMPS 163
                  P    A  P   P+A    
Sbjct: 478 AAPA---PAPPAAPAPAAAPAAPAAP 500

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 22/94 (23%), Positives = 32/94 (34%)

Query: 70  PSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLT 129
           P+ P    A      A  PA   +AP+PG +        V       G         G  
Sbjct: 618 PAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAA 677

Query: 130 PPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPS 163
           P +PP     +    P G   ++P   P+A  P+
Sbjct: 678 PAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPA 711

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 12/86 (13%)

Query: 78  ASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPD 137
           A   P+PAP PA           P A+  +PV P P PS     +       PP  P  +
Sbjct: 358 ALLVPVPAPQPA----------KPTAAAPSPVRPTPAPSTRPKAAAAAN--IPPKEPVRE 405

Query: 138 VGSGSGTPTGTPASRPDLTPSAAMPS 163
             +    P    A     TP +A   
Sbjct: 406 TATPPPVPPRPVAPPVPHTPESAPKL 431

Length = 585

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 70  PSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLT 129
           P+     +A+ AP PA  PA+  SAP+   + A                AP +       
Sbjct: 389 PAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPA-AAAPAAAPAAAPAAVAL 447

Query: 130 PPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPS 163
            P+PP+         P    A  P +  +A  P+
Sbjct: 448 APAPPAQAAPETVAIPVRV-APEPAVASAAPAPA 480

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 62   SLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPE 121
             L R         +        PA  PA++  AP+    PAASP  P+ P  +       
Sbjct: 2782 RLTRPAVASLSESRESLPSPWDPADPPAAV-LAPAAALPPAASPAGPLPPPTSAQ----- 2835

Query: 122  SDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPS 163
              T P   P  PP      GS  P G    RP     AA P+
Sbjct: 2836 -PTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPA 2876

Length = 3151

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 12/90 (13%)

Query: 74  VQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSP 133
           V+   +G  LP   P          +S  A+P       P P  +  ++ T         
Sbjct: 190 VEVTTAGDLLP---PGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAAT------EEE 240

Query: 134 PSPDVGSGSGT---PTGTPASRPDLTPSAA 160
              D    +          A++P+  P   
Sbjct: 241 LIADAKKAATGEPAANAAKAAKPEPMPDDQ 270

Length = 423

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 78  ASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTP 130
              AP  AP      +AP+P  + A +P A    +     E  E+D     TP
Sbjct: 281 EGAAPAAAPAKQE-AAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATP 332

Length = 633

>gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 82  PLPAPGPA-SLGSAPSPGESPAASPKAPVVPQPTPS---GEAPESDTTPGLTPPSPPSPD 137
           PLP   PA +  + P+P E+P   P     P+P P       P++D  PG  P SP  PD
Sbjct: 331 PLPEVSPAENPANNPNPRENPGTRPN----PEPDPDLNPDANPDTDGQPGTRPDSPAVPD 386

Query: 138 VGSG 141
             +G
Sbjct: 387 RPNG 390

This family consists of several Neisseria meningitidis TspB virulence factor proteins. Length = 502

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 1/98 (1%)

Query: 72  VPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPP 131
            P     S AP  +   A+     +     A +   P    P  +   P  +TT  L   
Sbjct: 367 EPEVPPQSAAPAASA-QATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAA 425

Query: 132 SPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPS 169
                     +      PA+     P  +    + S  
Sbjct: 426 RQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVR 463

Length = 647

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 1/105 (0%)

Query: 60  AISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEA 119
           A + P A   P+      A+ AP   P   +   A +      A+  A   P P     A
Sbjct: 377 AAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAA 436

Query: 120 PE-SDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPS 163
            + S   PG  P   P+P     +         RP    +AA P+
Sbjct: 437 RQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPA 481

Length = 700

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 78  ASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPS-P 136
           A  A        +   A +P  +P A   A   P   P+  A      P   PP+P + P
Sbjct: 370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP 429

Query: 137 DVGSGSGTPTGTPASRP 153
              + +  P   PA+  
Sbjct: 430 AAAAPAAAPAAAPAAVA 446

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 81   APLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPDVGS 140
             P P    ++    P P  +  ASP  P  P P      P +   P   P  PP+     
Sbjct: 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA-RPARPPTT---- 2763

Query: 141  GSGTPTGTPASRPDLTPSAAMP 162
             +G P   P + P   P   + 
Sbjct: 2764 -AGPPAPAPPAAPAAGPPRRLT 2784

Length = 3151

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 30/134 (22%), Positives = 44/134 (32%), Gaps = 10/134 (7%)

Query: 45  VTASVPFRVPINRTLAISLPRACNMPSV-PVQCKASGAPLP---APGPASLGSAPSPGES 100
           V A V   VP     A +   A  +P+V  V   A  A  P   A   A+   AP    +
Sbjct: 372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPA 431

Query: 101 PAAS------PKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPD 154
           P A+            P P  +     +D+        PP+    + +      P +  +
Sbjct: 432 PPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFE 491

Query: 155 LTPSAAMPSYIFSP 168
             P AA PS     
Sbjct: 492 PAPRAAAPSAATPA 505

Length = 830

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.46
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.45
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.39
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.31
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.08
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	98.92
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.38
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	92.79
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	91.3

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.46  E-value=4.6e-14  Score=96.51  Aligned_cols=62  Identities=34%  Similarity=0.795  Sum_probs=53.3

Q ss_pred             ccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcccCC-CHHHHhhccccCCC
Q 030083            5 FTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPI-NRTLAISLPRACNM   69 (183)
Q Consensus         5 LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i~I-N~trAlsLP~~Cgv   69 (183)
                      |++|++|++++   ...|+.+||++|+++++.+..|+|..+++......++ |.++++.||++||+
T Consensus         1 L~~C~~y~~~~---~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGG---ATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCC---CCCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            68999999985   3689999999999999889999999998754333345 89999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.45  E-value=4e-14  Score=103.58  Aligned_cols=68  Identities=26%  Similarity=0.614  Sum_probs=53.2

Q ss_pred             CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-----CCCceeeeecCCCCcccC-CCHHHHhhccccCCCCCCC
Q 030083            2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-----SLDCVCLIVTASVPFRVP-INRTLAISLPRACNMPSVP   73 (183)
Q Consensus         2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-----~~~CLC~~~~~~~~~~i~-IN~trAlsLP~~Cgv~~pp   73 (183)
                      +..|++|++||+++   ...|+++||+++|+|++.     +..|+|+.+++.. .++. ||.+||++||++||++.++
T Consensus         7 ~~~l~~C~~y~~g~---~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~-~~~~~i~~~~a~~LP~~C~v~~~~   80 (89)
T cd01960           7 TSLLAPCLGYLTGG---GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAA-AGISGLNPGRAAGLPGKCGVSIPY   80 (89)
T ss_pred             HhhHHhHHHHHhCC---CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccc-cccCCCCHHHHHhChHhcccCCCC
Confidence            46799999999986   368999999999999864     3345555444432 3454 9999999999999999765

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.39  E-value=2.6e-13  Score=96.61  Aligned_cols=68  Identities=29%  Similarity=0.723  Sum_probs=54.5

Q ss_pred             CcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCCCCc
Q 030083            3 TTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVPVQC   76 (183)
Q Consensus         3 ~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp~~C   76 (183)
                      ..|++|++||++++ +...|+..||++||++   +..|+|.+.+... .. .||.+||++||++||+++++.+|
T Consensus         6 ~~L~~C~~yl~~~~-~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~~-~~-~i~~~~a~~Lp~~Cgv~~p~~~C   73 (73)
T cd04660           6 DLLAECQPYVTGPN-PPPPPSRECCAALRRA---DLPCLCRYKTSLV-LQ-IIDPDKAVYLPAKCGLPLPPSSC   73 (73)
T ss_pred             HHHHHHHHHHcCCC-CCCCCCHHHHHHHHcC---CcCCEeeccCCCc-cc-ccCHHHHHHHHHHcCCCCCCCCC
Confidence            57899999999863 1246999999999984   5569999987532 22 49999999999999999876555

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.31  E-value=2.2e-13  Score=98.83  Aligned_cols=70  Identities=33%  Similarity=0.789  Sum_probs=47.3

Q ss_pred             CcccCc---HHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCCCCc
Q 030083            3 TTFTPC---MNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVPVQC   76 (183)
Q Consensus         3 ~~LaPC---l~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp~~C   76 (183)
                      ..|++|   +.|+++    ...|+.+||+++|++++.+..|||..+++....+++||.+|++.||++||++.++.+|
T Consensus        24 ~~l~~c~~~~~~~~~----~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~~~~~C   96 (96)
T PF14368_consen   24 NSLLPCCPCLCYVTG----GPAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPVPPSKC   96 (96)
T ss_dssp             CCCCHH--HHHHHCC---------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-S----
T ss_pred             HHHhccccchhccCC----CCCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCCCCCCC
Confidence            357777   788875    4789999999999998889999999998753245689999999999999999877555

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.08  E-value=1e-10  Score=82.92  Aligned_cols=61  Identities=26%  Similarity=0.628  Sum_probs=51.0

Q ss_pred             CcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCC
Q 030083            3 TTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSV   72 (183)
Q Consensus         3 ~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~p   72 (183)
                      ..|++|++|++++    ..|+.+||+.||.    +..|||.++++.. +...||..+|+.|+++|||..+
T Consensus         4 ~~L~~C~~ai~~~----~~Ps~~CC~~Lk~----~~~CLC~y~~~p~-l~~~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILGG----SPPSAACCAKLKE----QQSCLCQYAKNPS-LKQYVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhCC----CCCCHHHHHHHhc----CCCCeeeeecCcc-HHhhcCcHHHHHHHHHcCCCCC
Confidence            5799999999974    5899999999998    3389999987643 3334999999999999999874

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=98.92  E-value=1.3e-09  Score=74.71  Aligned_cols=72  Identities=39%  Similarity=0.794  Sum_probs=55.1

Q ss_pred             CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCccc---CCCHHHHhhccccCCCCCCCCCc
Q 030083            2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRV---PINRTLAISLPRACNMPSVPVQC   76 (183)
Q Consensus         2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i---~IN~trAlsLP~~Cgv~~pp~~C   76 (183)
                      +..+.+|+.|+++.. ....|+.+||++|+.+.  +..|+|.++.......+   .+|..++..||+.||+..++..|
T Consensus         5 ~~~~~~c~~~~~~~~-~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~~~C   79 (79)
T smart00499        5 LLQLAPCLSYLTGGS-PGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPYTDC   79 (79)
T ss_pred             hhhHHhhHHHHcCCC-CCCCCchHHHHHHHHhc--ccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCCCCC
Confidence            345679999999752 13678899999999986  77899998876432122   26999999999999998764444

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.38  E-value=6.9e-09  Score=74.98  Aligned_cols=66  Identities=29%  Similarity=0.677  Sum_probs=53.3

Q ss_pred             cccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcc-----------cCCCHHHHhhccccCCCCCC
Q 030083            4 TFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFR-----------VPINRTLAISLPRACNMPSV   72 (183)
Q Consensus         4 ~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~-----------i~IN~trAlsLP~~Cgv~~p   72 (183)
                      .|.+|..|++++   ...+..+||++|++|   +..|+|..+.... .+           ..++..+|..||+.||+..+
T Consensus        14 ~l~~c~~~~~~~---~~~~~~~CC~~L~~l---~~~C~C~~i~~~~-~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~   86 (90)
T PF00234_consen   14 RLSPCLPYLQGG---CQQPSQQCCQQLRQL---DPQCRCEAIRQMV-RQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPP   86 (90)
T ss_dssp             HHHGGHHHHTTS---SSHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred             cccccHHHHhcc---cccchHHHhHHHHHH---hHHhhCHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCC
Confidence            388999999986   347899999999998   6789999887532 12           26899999999999999987


Q ss_pred             CCCc
Q 030083           73 PVQC   76 (183)
Q Consensus        73 p~~C   76 (183)
                      +++|
T Consensus        87 ~~~C   90 (90)
T PF00234_consen   87 YTDC   90 (90)
T ss_dssp             SS-G
T ss_pred             CCCC
Confidence            6455

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=92.79  E-value=0.08  Score=39.63  Aligned_cols=72  Identities=28%  Similarity=0.535  Sum_probs=45.9

Q ss_pred             cccCcHHHhhcCCC-CCCCCCHHHHHHHHHhhCCC-CCceeeeecCCCCcccCCCHHHHhh-ccccCCCCCCC-CCc
Q 030083            4 TFTPCMNFLTNSSG-SGTSPSSDCCGSLKNLTGNS-LDCVCLIVTASVPFRVPINRTLAIS-LPRACNMPSVP-VQC   76 (183)
Q Consensus         4 ~LaPCl~Yltg~s~-~~~sPs~~CC~gLksl~~~~-~~CLC~~~~~~~~~~i~IN~trAls-LP~~Cgv~~pp-~~C   76 (183)
                      +|--|.+-+..... .+..+..+||.-++.+.+.+ ..|+|..++.+. +++.+|....++ |-..||-..+. |+|
T Consensus        10 kLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~-lgi~~~~pv~l~llln~CGk~~P~gf~C   85 (85)
T cd01958          10 KLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANI-LGISINIPVALSLLLNSCGRNVPPGFTC   85 (85)
T ss_pred             HhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeeccc-cCcccccChhHHHHHHHHcCcCCCCCcC
Confidence            35557776632100 12467799999999998875 579999998753 455444444443 33568887654 455

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=91.30  E-value=0.039  Score=41.17  Aligned_cols=73  Identities=25%  Similarity=0.508  Sum_probs=46.9

Q ss_pred             cccCcHHHhhcC-CCCCCCCCHHHHHHHHHhhCCC-CCceeeeecCCCCcc-cCCCHHHHh-hccccCCCCCCC-CCcC
Q 030083            4 TFTPCMNFLTNS-SGSGTSPSSDCCGSLKNLTGNS-LDCVCLIVTASVPFR-VPINRTLAI-SLPRACNMPSVP-VQCK   77 (183)
Q Consensus         4 ~LaPCl~Yltg~-s~~~~sPs~~CC~gLksl~~~~-~~CLC~~~~~~~~~~-i~IN~trAl-sLP~~Cgv~~pp-~~C~   77 (183)
                      +|--|.+.+--. -..+..+..+||.-++.+.+.+ ..|||..++.+. ++ +.||....+ .|-..||...+. |+|.
T Consensus         8 kLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~v-lg~i~~~ipv~l~~lln~CGk~~p~gf~C~   85 (85)
T PF14547_consen    8 KLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANV-LGLINVNIPVALNLLLNACGKTVPSGFTCP   85 (85)
T ss_pred             hhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhc-ccccccccccHHHHHHHHhCCcCcCCCcCC
Confidence            566788888110 0012357899999999998875 579999887653 34 343333333 456779987654 5773

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	4e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	9e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-04

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 42.5 bits (100), Expect = 4e-06
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 2  LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNL-----TGNSLDCVCLIVTASVPFRVPIN 56
           +   PC+++     G G+ PS+ CC  +++L     T       C  +  +      +N
Sbjct: 8  ASAIAPCISYAR---GQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLN 64

Query: 57 RTLAISLPRACN 68
             A S+P  C 
Sbjct: 65 AGNAASIPSKCG 76

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 8/98 (8%)

Query: 79  SGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPDV 138
           SG            ++ +   S   +   P V  P P+   P      G  P +     V
Sbjct: 12  SGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPP-PAPAAGNPPDTVTGDSV 70

Query: 139 G-------SGSGTPTGTPASRPDLTPSAAMPSYIFSPS 169
                   +G GT +  PA R    P    P+     +
Sbjct: 71  LQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAA 108

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 38.2 bits (88), Expect = 9e-04
 Identities = 17/102 (16%), Positives = 28/102 (27%)

Query: 54  PINRTLAISLPRACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQP 113
            + R   + +P A    +      A   P+  P PA          +P  +     V Q 
Sbjct: 14  LVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQR 73

Query: 114 TPSGEAPESDTTPGLTPPSPPSPDVGSGSGTPTGTPASRPDL 155
              G      T+          P   + +  P     + P L
Sbjct: 74  ILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 11/87 (12%), Positives = 19/87 (21%), Gaps = 3/87 (3%)

Query: 82  PLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLTPPSPPSPDVGSG 141
           P     P + G A +   + AA+        P                 P  P+P   +G
Sbjct: 2   PAAPTSPGTPGVAAA---TQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58

Query: 142 SGTPTGTPASRPDLTPSAAMPSYIFSP 168
                    +               + 
Sbjct: 59  DNATVAAGHATLREHLRDIKAENTDAN 85

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 17/100 (17%), Positives = 25/100 (25%), Gaps = 9/100 (9%)

Query: 70  PSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTPSGEAPESDTTPGLT 129
           P+ P      G            + P+P    AA    P   +                T
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNP---------T 52

Query: 130 PPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPS 169
           PP P   +    +G  T     R     +     Y+  P 
Sbjct: 53  PPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPP 92

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 10/108 (9%)

Query: 70   PSVPVQCKASGAPLPAPGPASLGSAPSPG---ESPAASPKAPVV----PQPTPSGEAPES 122
                    A      +P  A   +  SPG    SP  SP +P      P  +P+  +  S
Sbjct: 1506 GGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSY-S 1564

Query: 123  DTTPGLTPPSPP-SPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPS 169
             T+P  +P SP  SP   S S T      + P  +P++   S   SPS
Sbjct: 1565 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPS 1611

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 78   ASGAPLPAPGPASLGSAPSPGESPAASPKAPVVPQPTP--SGEAPE-SDTTPGLTP---- 130
            A      A G A  G A SP  +   +P +P     +P  S  +P  S T+P  +P    
Sbjct: 1503 AMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPS 1562

Query: 131  PSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSPS 169
             SP SP     S + + T  S    +PS +  S  +SP+
Sbjct: 1563 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1601

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 69   MPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVP--QPTPSGEAPESDTTP 126
             P+ P     S A  P     S  S      SP+ SP +P      P+ S  +P    T 
Sbjct: 1543 SPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1602

Query: 127  GLTPPSPPSPDVGSGSGTPTGTPASRPDLTPSAAMPSYIFSP 168
                P+ PS    S S +PT    S    + S   PSY  + 
Sbjct: 1603 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1644

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 13/112 (11%)

Query: 66   ACNMPSVPVQCKASGAPLPAPGPASLGSAPSPGESPAASPKAPVVP--QPTPSGEAPESD 123
                P         G   P+  P+S G + SP   P++   +P  P   PT    +P S 
Sbjct: 1538 GYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSP 1597

Query: 124  ----TTPGLTPPSP-PSPDVGSGSGT-PTGTPASRPDLTPSAAMPSYIFSPS 169
                T+P  +  SP  SP   S S T P+ +P S     PS +  S  +SP+
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTS-----PSYSPTSPSYSPT 1644

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.52
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.51
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.49
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.49
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.48
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.48
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.43
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.3
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.27
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	93.07
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	89.38

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.52  E-value=2.8e-16  Score=116.60  Aligned_cols=74  Identities=24%  Similarity=0.578  Sum_probs=58.6

Q ss_pred             CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-----CCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCC---
Q 030083            2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-----SLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVP---   73 (183)
Q Consensus         2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-----~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp---   73 (183)
                      +..|+||++||+|+    ..|+..||+++|+|++.     |+.|+|..+++......+||.+||++||++|||++++   
T Consensus         8 ~~~L~pCl~Yv~g~----~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p~~Is   83 (93)
T 2ljo_A            8 TSDLSPCLTYLTGG----PGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKIS   83 (93)
T ss_dssp             HHHHHHHHHHHTTS----SCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCSSCCS
T ss_pred             HHHHHhHHHHHcCC----CCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCCCCCC
Confidence            45799999999985    36999999999999864     4567776666533333479999999999999999985   


Q ss_pred             --CCcCCC
Q 030083           74 --VQCKAS   79 (183)
Q Consensus        74 --~~C~~~   79 (183)
                        +||++.
T Consensus        84 ~~~dC~~v   91 (93)
T 2ljo_A           84 TTTNCNTV   91 (93)
T ss_dssp             TTCCGGGC
T ss_pred             CCCCCCCC
Confidence              489864

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.51  E-value=5e-16  Score=114.56  Aligned_cols=73  Identities=25%  Similarity=0.620  Sum_probs=58.8

Q ss_pred             CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-------CCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCC-
Q 030083            2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-------SLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVP-   73 (183)
Q Consensus         2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-------~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp-   73 (183)
                      +..|+||++|++++   +..|+++||++||++++.       +..|+|++.... .++ +||.++|++||++|||++++ 
T Consensus         8 ~~~L~pCl~y~~~~---~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~-~~~-~in~~~A~~LP~~C~v~~p~~   82 (93)
T 1afh_A            8 ASAIAPCISYARGQ---GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAA-GVS-GLNAGNAASIPSKCGVSIPYT   82 (93)
T ss_dssp             HHHHGGGHHHHTTS---CCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHT-TST-TCCHHHHHHHHHHHHCCCSSC
T ss_pred             HHhccCcHHHHcCC---CCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccc-ccc-CcCHHHHHHHHHHcCCCCCCC
Confidence            45799999999986   467999999999999741       368999876432 123 79999999999999999886 


Q ss_pred             ----CCcCCC
Q 030083           74 ----VQCKAS   79 (183)
Q Consensus        74 ----~~C~~~   79 (183)
                          ++|+..
T Consensus        83 is~~~dC~~v   92 (93)
T 1afh_A           83 ISTSTDCSRV   92 (93)
T ss_dssp             CSTTCCSSSC
T ss_pred             CCCCCCCccC
Confidence                489864

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.49  E-value=1.1e-15  Score=112.60  Aligned_cols=70  Identities=30%  Similarity=0.678  Sum_probs=56.5

Q ss_pred             CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-------CCCceeeeecCCCCccc-CCCHHHHhhccccCCCCCCC
Q 030083            2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-------SLDCVCLIVTASVPFRV-PINRTLAISLPRACNMPSVP   73 (183)
Q Consensus         2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-------~~~CLC~~~~~~~~~~i-~IN~trAlsLP~~Cgv~~pp   73 (183)
                      +..|+||++|++++   +. |+ +||++||+|++.       +..|+|++...   ..+ +||.++|++||++|||++++
T Consensus         8 ~~~L~pCl~y~~~~---~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~---~~~~~in~~~A~~LP~~C~v~~p~   79 (91)
T 1t12_A            8 TSNLAPCLAYLRNT---GP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAA---GAISGINLGKAAGLPSTCGVNIPY   79 (91)
T ss_dssp             HHHTHHHHHHHTTS---SC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHH---HHCTTCCHHHHHHHHHHTTCCCSS
T ss_pred             HHhccCcHHHHcCC---CC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccc---cccCCcChhHHHHHHHHcCCCCCC
Confidence            35799999999986   34 88 999999999864       47899985321   233 79999999999999999886


Q ss_pred             -----CCcCCC
Q 030083           74 -----VQCKAS   79 (183)
Q Consensus        74 -----~~C~~~   79 (183)
                           ++|+..
T Consensus        80 ~is~~~dC~~v   90 (91)
T 1t12_A           80 KISPSTDCSKV   90 (91)
T ss_dssp             CSSSSSCCTTC
T ss_pred             CCCCCCCCccC
Confidence                 488864

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.49  E-value=9.9e-16  Score=112.80  Aligned_cols=71  Identities=20%  Similarity=0.575  Sum_probs=57.2

Q ss_pred             CcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhC-------CCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCC--
Q 030083            3 TTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTG-------NSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVP--   73 (183)
Q Consensus         3 ~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~-------~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp--   73 (183)
                      ..|+||++|++++    ..|+.+||++||+|++       .+..|+|++.... .++ +||.++|++||++|||++++  
T Consensus         9 ~~L~pCl~y~~~~----~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~-~~~-~in~~~A~~LP~~Cgv~~p~~i   82 (92)
T 2alg_A            9 SSLAPCIPYVRGG----GAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSA-SVP-GVNPNNAAALPGKCGVSIPYKI   82 (92)
T ss_dssp             HHHGGGHHHHHHC----SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-HST-TCCHHHHHHHHHHTTCCCSSCS
T ss_pred             HhccCcHHHHcCC----CCCCHHHHHHHHHHHhhhcccCCCCcCCccccCccc-ccC-ccChHHHHHHHHHcCCCCCCCC
Confidence            4799999999986    3588999999999973       3478999975431 123 79999999999999999886  


Q ss_pred             ---CCcCCC
Q 030083           74 ---VQCKAS   79 (183)
Q Consensus        74 ---~~C~~~   79 (183)
                         +||+..
T Consensus        83 s~~~dC~~v   91 (92)
T 2alg_A           83 SASTNCATV   91 (92)
T ss_dssp             STTSCGGGC
T ss_pred             CCCCCCccC
Confidence               488764

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.48  E-value=2.8e-15  Score=110.21  Aligned_cols=71  Identities=28%  Similarity=0.560  Sum_probs=57.2

Q ss_pred             CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-------CCCceeeeecCCCCccc-CCCHHHHhhccccCCCCCCC
Q 030083            2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-------SLDCVCLIVTASVPFRV-PINRTLAISLPRACNMPSVP   73 (183)
Q Consensus         2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-------~~~CLC~~~~~~~~~~i-~IN~trAlsLP~~Cgv~~pp   73 (183)
                      +..|+||++|++++   +. |+.+||++||+|++.       +..|+|++...   ..+ +||.++|++||++||+++++
T Consensus         7 ~~~L~pCl~yv~~~---~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~---~~~~~in~~~A~~LP~~Cgv~~p~   79 (91)
T 1siy_A            7 QGNLAQCIGFLQKG---GV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAA---GAVRGINPNNAEALPGKCGVNIPY   79 (91)
T ss_dssp             HHHHHHHHHHHTSC---SC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHT---TCCSSCCHHHHHHHHHHHTCCCSS
T ss_pred             HHhccCcHHHHhCC---CC-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcc---cccCCcCHHHHHHHHHHcCCCCCC
Confidence            45799999999986   23 999999999999754       35899984321   244 79999999999999999876


Q ss_pred             -----CCcCCC
Q 030083           74 -----VQCKAS   79 (183)
Q Consensus        74 -----~~C~~~   79 (183)
                           +||+..
T Consensus        80 ~is~~~dC~~v   90 (91)
T 1siy_A           80 KISTSTNCNSI   90 (91)
T ss_dssp             CSCTTSCSSTT
T ss_pred             CCCCCCCCccC
Confidence                 489864

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.48  E-value=1.2e-15  Score=111.98  Aligned_cols=70  Identities=27%  Similarity=0.596  Sum_probs=56.4

Q ss_pred             CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-------CCCceeeeecCCCCccc-CCCHHHHhhccccCCCCCCC
Q 030083            2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-------SLDCVCLIVTASVPFRV-PINRTLAISLPRACNMPSVP   73 (183)
Q Consensus         2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-------~~~CLC~~~~~~~~~~i-~IN~trAlsLP~~Cgv~~pp   73 (183)
                      +..|+||++|++++   +. |+.+||++||+|++.       +..|+|++...   ..+ +||.++|++||++|||++++
T Consensus         7 ~~~L~pCl~y~~~~---~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~---~~~~~in~~~A~~LP~~C~v~~p~   79 (90)
T 1bwo_A            7 DSLVRPCLSYVQGG---PG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIA---RGIHNLNEDNARSIPPKCGVNLPY   79 (90)
T ss_dssp             HHHHGGGHHHHTTC---SC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH---TTCTTCCHHHHHTHHHHHTCCCSS
T ss_pred             HHhhcccHHHHcCC---CC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCch---hccCCcCHHHHHHHHHHcCCCCCC
Confidence            35799999999986   34 999999999999842       46899975432   233 79999999999999999886


Q ss_pred             -----CCcCC
Q 030083           74 -----VQCKA   78 (183)
Q Consensus        74 -----~~C~~   78 (183)
                           +||+.
T Consensus        80 ~is~~~dC~~   89 (90)
T 1bwo_A           80 TISLNIDCSR   89 (90)
T ss_dssp             CCCTTCCGGG
T ss_pred             CCCCCCCCCC
Confidence                 48875

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.43  E-value=4e-15  Score=105.93  Aligned_cols=69  Identities=25%  Similarity=0.598  Sum_probs=55.6

Q ss_pred             CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCCCCc
Q 030083            2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVPVQC   76 (183)
Q Consensus         2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp~~C   76 (183)
                      +..|++|++|++++  +...|+.+||++||+   .|..|||.++++.....++||.++|+.||++||+++++ +|
T Consensus         9 ~~~L~pC~~yv~~~--~~~~Ps~~CC~~lk~---~~~~ClC~~~~~~~~~~~gin~~~A~~LP~~Cgv~~p~-~C   77 (77)
T 2rkn_A            9 QDELNECKPAVSKE--NPTSPSQPCCTALQH---ADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-TC   77 (77)
T ss_dssp             HHHHHHHGGGGBSS--SCCCCCHHHHHHHTT---CCHHHHHTTTTCHHHHHHTBCHHHHHHHHHHTTCSCCC-CC
T ss_pred             HHhHhhCHHHHcCC--CCCCCCHHHHHHHHh---cCcCCcCcccCCcchhhcCcCHHHHHHHHHHcCCCCCC-CC
Confidence            35689999999974  246899999999998   46799999987532234579999999999999999753 44

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.30  E-value=2.5e-13  Score=94.85  Aligned_cols=61  Identities=20%  Similarity=0.519  Sum_probs=51.3

Q ss_pred             CcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCC
Q 030083            3 TTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSV   72 (183)
Q Consensus         3 ~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~p   72 (183)
                      ..|+||++||+++    ..|+.+||++||..    ..|+|.++++.. +...||.++|+.||++|||+++
T Consensus         5 ~~L~pC~~~v~~~----~~Ps~~CC~~lk~~----~~ClC~~~k~~~-~~~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAILSG----AKPSGECCGNLRAQ----QGCFCQYAKDPT-YGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHTTC----CCCCHHHHHHHHHH----SSHHHHGGGCST-THHHHTCHHHHHHHHHHTSCCS
T ss_pred             hhcccCHHHHcCC----CCCCHHHHHhhCCC----CCCCCccccCcc-cccccCHHHHHHHHHHcCCCCC
Confidence            5799999999975    47999999999983    789998877642 3336999999999999999875

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.27  E-value=3.4e-13  Score=94.64  Aligned_cols=64  Identities=20%  Similarity=0.504  Sum_probs=52.6

Q ss_pred             CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCCCCc
Q 030083            2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVPVQC   76 (183)
Q Consensus         2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp~~C   76 (183)
                      ...|+||++||+++    ..|+.+||++||..    ..|+|.++++.. +...||.++|+.||++|||+++  +|
T Consensus         5 ~~~L~pC~~~v~~~----~~Ps~~CC~~lk~~----~~ClC~~~k~~~-~~~~in~~~A~~Lp~~Cgv~~P--~C   68 (69)
T 1l6h_A            5 AGQLTVCTGAIAGG----ARPTAACCSSLRAQ----QGCFCQFAKDPR-YGRYVNSPNARKAVSSCGIALP--TC   68 (69)
T ss_dssp             TTTHHHHHHHHTTC----CSTTHHHHHHHHHH----HHHHHHHTTCSS-HHHHTTTTTGGGCCCCCSSCSC--CC
T ss_pred             hhhcccCHHHHcCC----CCCCHHHHHhhCCC----CCCCCccccCcc-cccccCHHHHHHHHHHcCCCCC--CC
Confidence            35799999999975    47999999999983    689998876532 3336999999999999999875  56

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=93.07  E-value=0.012  Score=42.61  Aligned_cols=67  Identities=21%  Similarity=0.555  Sum_probs=48.6

Q ss_pred             cccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCC-CCceeeeecCCCCcccCCCHHHHhh-ccccCCCCCCC-CCcCC
Q 030083            4 TFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNS-LDCVCLIVTASVPFRVPINRTLAIS-LPRACNMPSVP-VQCKA   78 (183)
Q Consensus         4 ~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~-~~CLC~~~~~~~~~~i~IN~trAls-LP~~Cgv~~pp-~~C~~   78 (183)
                      +|--|.+-+.+.    ..+...||.-++.+.+.+ ..|||..++.   +++ +|...+++ |-..||...+. |+|..
T Consensus        10 kLgvCanvL~g~----~~~~~~CC~Ll~GL~dleAAvCLCtaik~---Lgi-lnlpv~L~llln~Cgk~~P~gF~C~~   79 (80)
T 1hyp_A           10 DLSICLNILGGS----LGTVDDCCALIGGLGDIEAIVCLCIQLRA---LGI-LNLNRNLQLILNSCGRSYPSNATCPR   79 (80)
T ss_dssp             CCGGGGGGGGTC----CTTHHHHHHHHHTSCHHHHHHHHHHHHHH---HTC-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             chhHHHHHhCcC----CCCCCccchhhhCcchhhhhhhhhhhccc---cce-eecChhHHHHHHHhCCcCcCCCCCCC
Confidence            355688877542    236689999999998764 5799988762   455 67766776 55689998776 78863

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=89.38  E-value=0.01  Score=52.95  Aligned_cols=53  Identities=19%  Similarity=0.541  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhhCCCCCceeeeecCCCCc---------ccCCCHHHHhhccccCCCCCCCCCcCC
Q 030083           24 SDCCGSLKNLTGNSLDCVCLIVTASVPF---------RVPINRTLAISLPRACNMPSVPVQCKA   78 (183)
Q Consensus        24 ~~CC~gLksl~~~~~~CLC~~~~~~~~~---------~i~IN~trAlsLP~~Cgv~~pp~~C~~   78 (183)
                      .+||+.|+.+.+ ++.|.|..+...+..         ....=..+|..||..||+. .+..|+-
T Consensus       429 ~~cc~~l~~~~~-~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~-~~~~c~~  490 (500)
T 3ob4_A          429 ERCCNELNEFEN-NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLR-APQRCDL  490 (500)
T ss_dssp             HHHHHHHGGGTT-CHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCC-CCSCCCC
T ss_pred             HHHHHHHHhCCc-ccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCC-CCccCCc
Confidence            789999999732 279999877542110         0111135599999999998 3457874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	1e-09
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	8e-08

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 50.6 bits (121), Expect = 1e-09
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 2  LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLD--CVCLIVTASVPFRVPINRTL 59
           +   PC+++        ++       SL N    + D    C  +  +      +N   
Sbjct: 8  ASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGN 67

Query: 60 AISLPRACN 68
          A S+P  C 
Sbjct: 68 AASIPSKCG 76

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 46.0 bits (109), Expect = 8e-08
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 2  LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNL-----TGNSLDCVCLIVTASVPFRVPIN 56
           +   PC+ ++      G  PS +CC  +++L     +      VC  +         +N
Sbjct: 7  DSKMKPCLTYVQG----GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLN 62

Query: 57 RTLAISLPRACN 68
             A S+P  CN
Sbjct: 63 LNNAASIPSKCN 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.52
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.49
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	98.14
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	98.05
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	89.26

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.52  E-value=1.7e-16  Score=115.60  Aligned_cols=75  Identities=20%  Similarity=0.514  Sum_probs=59.2

Q ss_pred             CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-----CCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCC---
Q 030083            2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-----SLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVP---   73 (183)
Q Consensus         2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-----~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp---   73 (183)
                      +..|+||++||+|+   +..|+..||+++++|++.     ++.|+|..+++......+||.+|+++||++||+++++   
T Consensus         8 ~~~l~pCl~Yltg~---~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~l~~pis   84 (93)
T d1fk5a_           8 ASAIAPCISYARGQ---GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTIS   84 (93)
T ss_dssp             HHHHGGGHHHHTTC---SSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCSSCCS
T ss_pred             HHHhhhhHHHHhCC---CCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCCCCCCCC
Confidence            45799999999986   468999999999999863     4556766665432233579999999999999998875   


Q ss_pred             --CCcCCC
Q 030083           74 --VQCKAS   79 (183)
Q Consensus        74 --~~C~~~   79 (183)
                        +||+..
T Consensus        85 ~~~dCs~i   92 (93)
T d1fk5a_          85 TSTDCSRV   92 (93)
T ss_dssp             TTCCGGGC
T ss_pred             CCCCCCcC
Confidence              489864

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.49  E-value=3.3e-16  Score=113.72  Aligned_cols=74  Identities=22%  Similarity=0.522  Sum_probs=58.5

Q ss_pred             CCcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCC-----CCCceeeeecCCCCcccCCCHHHHhhccccCCCCCCC---
Q 030083            2 LTTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGN-----SLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSVP---   73 (183)
Q Consensus         2 l~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~-----~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~pp---   73 (183)
                      +..|+||++||+++    ..|+..||+++++|++.     ++.|+|..+++......+||.+||++||++||+++++   
T Consensus         7 ~~~l~pCl~Yl~g~----~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~p~pis   82 (91)
T d1mida_           7 DSKMKPCLTYVQGG----PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTIS   82 (91)
T ss_dssp             HHHHGGGHHHHTTC----SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCCSCCC
T ss_pred             HHHHHhhHHHHcCC----CCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCCCCCCC
Confidence            45799999999985    47999999999999863     4567777766532233479999999999999999884   


Q ss_pred             --CCcCCC
Q 030083           74 --VQCKAS   79 (183)
Q Consensus        74 --~~C~~~   79 (183)
                        +||++.
T Consensus        83 ~~~dC~~i   90 (91)
T d1mida_          83 PDIDCSRI   90 (91)
T ss_dssp             TTCCGGGC
T ss_pred             CCCCCCCC
Confidence              489864

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=98.14  E-value=1.9e-07  Score=64.17  Aligned_cols=61  Identities=20%  Similarity=0.529  Sum_probs=51.4

Q ss_pred             CcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCC
Q 030083            3 TTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSV   72 (183)
Q Consensus         3 ~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~p   72 (183)
                      ..|++|++.|+++    ..|+.+||+-||.    +..|||.++++.. +.--||-.+|..+-..|||..+
T Consensus         5 ~~L~~C~~Ai~~g----~~PS~~CC~kLke----Q~~ClC~Y~kdP~-~~~yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           5 SQLAVCASAILSG----AKPSGECCGNLRA----QQGCFCQYAKDPT-YGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             GGGGGGHHHHHHC----CCCCHHHHHHHHH----HGGGHHHHTTCTT-THHHHTSHHHHHHHHHTTCCCC
T ss_pred             hhccccHHHHhcC----CCCcHHHHHHHHh----cCCccceecCCcc-HHHHcCCHHHHHHHHhcCCCCC
Confidence            4799999999985    5899999999999    5679999998752 3335888899999999999865

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.05  E-value=1.9e-07  Score=64.48  Aligned_cols=61  Identities=20%  Similarity=0.483  Sum_probs=51.1

Q ss_pred             CcccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCCCCceeeeecCCCCcccCCCHHHHhhccccCCCCCC
Q 030083            3 TTFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNSLDCVCLIVTASVPFRVPINRTLAISLPRACNMPSV   72 (183)
Q Consensus         3 ~~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~~~CLC~~~~~~~~~~i~IN~trAlsLP~~Cgv~~p   72 (183)
                      ..|.+|++.|+++    ..|+.+||+-||.    +..|||.++++.. +.--||-.+|..+-..|||..+
T Consensus         6 ~~L~~C~~ai~~g----~~PS~~CC~kLke----Q~~ClC~Y~k~P~-~~~yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           6 GQLTVCTGAIAGG----ARPTAACCSSLRA----QQGCFCQFAKDPR-YGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             TTHHHHHHHHTTC----CSTTHHHHHHHHH----HHHHHHHHTTCSS-HHHHTTTTTGGGCCCCCSSCSC
T ss_pred             hhccccHHHHhCC----CCCcHHHHHHHHh----cCCccceeccCcc-HHHHcCCHHHHHHHHhcCCCCC
Confidence            4799999999986    5799999999999    5579999988642 3335888899999999999875

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=89.26  E-value=0.013  Score=40.29  Aligned_cols=67  Identities=21%  Similarity=0.535  Sum_probs=45.9

Q ss_pred             cccCcHHHhhcCCCCCCCCCHHHHHHHHHhhCCC-CCceeeeecCCCCcccCCCHHHHhh-ccccCCCCCCC-CCcCC
Q 030083            4 TFTPCMNFLTNSSGSGTSPSSDCCGSLKNLTGNS-LDCVCLIVTASVPFRVPINRTLAIS-LPRACNMPSVP-VQCKA   78 (183)
Q Consensus         4 ~LaPCl~Yltg~s~~~~sPs~~CC~gLksl~~~~-~~CLC~~~~~~~~~~i~IN~trAls-LP~~Cgv~~pp-~~C~~   78 (183)
                      +|--|.+-+.+.    ..+...||.-++.+.+.+ ..|||..++..   .+ +|...+++ |=..||-..+. |+|..
T Consensus         5 Klg~C~nvLg~~----~~~~~~CC~Ll~GL~dleAAvCLCtaika~---~l-lnvpv~l~llln~Cgk~~P~gF~CP~   74 (75)
T d1hypa_           5 DLSICLNILGGS----LGTVDDCCALIGGLGDIEAIVCLCIQLRAL---GI-LNLNRNLQLILNSCGRSYPSNATCPR   74 (75)
T ss_dssp             CCGGGGGGGGTC----CTTHHHHHHHHHTSCHHHHHHHHHHHHHHH---TC-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             chhhHHHHhcCc----cCCCCCcchHHhhHHHHHHHHHHHHHHHHh---hh-ccccchHHHHHHHcCCcCcCCCcCCC
Confidence            355688877653    345688999999998764 57999988752   22 44444443 44579998776 78865