Citrus Sinensis ID: 030090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWNHHLGFP
Secondary Structure (PSIPRED)
ccccccHHHHHcccccccccccccccccHHHHHHHHHHHcccEEEEEEcccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATgklfesssssMKDIIARYNMhssnisklnhpslelqlensKYLSLSREIADKSRQLRQMRgedlhgltIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLwnhhlgfp
Flexible Loop (DISEMBL)
marekikirkidnitarqvtfskrrrglfkkaeelsvlcdAEVGVIIFSAtgklfesssSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWNHHLGFP
Low Complexity Region (SEG)
MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAklleenknlkQKVRLFDLWNHHLGFP
Disordered region (IsUnstruct)
*******IRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSAT*****************************************************************GLTIEELQHLETMLEQGLSRVLQT****IM******************NLKQKVRLFDLWNHHL***
Disordered Region (DISOPRED)
MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYN********************SKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKN******************
Disordered Region (DISEMBL)
MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWNHHLGFP
Disordered Region (DISPRO)
*****IKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLW*******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKxxxxxxxxxxxxxxxxxxxxxDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNExxxxxxxxxxxxxxxxxxxxxVRLFDLWNHHLGFP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q9FVC1	240	MADS-box protein SVP OS=A	yes	no	0.994	0.758	0.661	1e-62
Q9FUY6	265	MADS-box protein JOINTLES	N/A	no	0.928	0.641	0.695	6e-61
O82794	220	MADS-box protein AGL24 OS	no	no	0.928	0.772	0.643	2e-58
Q9XJ66	228	MADS-box transcription fa	yes	no	0.928	0.745	0.588	1e-50
Q5K4R0	246	MADS-box transcription fa	no	no	0.928	0.691	0.578	3e-49
Q69TG5	245	MADS-box transcription fa	no	no	0.852	0.636	0.513	8e-42
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.967	0.737	0.480	5e-37
Q6EP49	240	MADS-box transcription fa	no	no	0.978	0.745	0.475	9e-37
Q6VAM4	159	MADS-box transcription fa	no	no	0.846	0.974	0.470	5e-32
Q9SZJ6	228	Agamous-like MADS-box pro	no	no	0.934	0.75	0.450	2e-31

>sp|Q9FVC1|SVP_ARATH MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/183 (66%), Positives = 149/183 (81%), Gaps = 1/183 (0%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MAREKI+IRKIDN TARQVTFSKRRRGLFKKAEELSVLCDA+V +IIFS+TGKLFE  SS
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQL-ENSKYLSLSREIADKSRQLRQMRGEDLHGLT 119
           SMK+++ R+N+ S N+ KL+ PSLELQL ENS +  +S+EIADKS +LRQMRGE+L GL 
Sbjct: 61  SMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLD 120

Query: 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWNHH 179
           IEELQ LE  LE GL+RV++TK D+IM+EIS L++KG +L++ENK L+Q+       N  
Sbjct: 121 IEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLTEENER 180

Query: 180 LGF 182
           LG 
Sbjct: 181 LGM 183

Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1

 Score =  233 bits (594), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 119/171 (69%), Positives = 145/171 (84%), Gaps = 1/171 (0%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MAREKI+I+KIDN TARQVTFSKRRRGLFKKAEELSVLCDA+V +IIFS+TGKLF+ SSS
Sbjct: 1   MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQL-ENSKYLSLSREIADKSRQLRQMRGEDLHGLT 119
           SMK I+ R ++HS N+ KL+ PSLELQL ENS Y  LS+EI++KS +LRQMRGE+L GL 
Sbjct: 61  SMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLN 120

Query: 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170
           IEELQ LE  LE GLSRV++ KGD+IM EI+ L++KG  L+EEN+ L+Q+V
Sbjct: 121 IEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQV 171

Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Solanum lycopersicum (taxid: 4081)

>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 146/171 (85%), Gaps = 1/171 (0%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MAREKI+I+KIDNITARQVTFSKRRRG+FKKA+ELSVLCDA+V +IIFSATGKLFE SSS
Sbjct: 1   MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61  SMKDIIARYNMHSSNISKL-NHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLT 119
            M+DI+ RY++H+SNI+KL + PS  L+LEN     LS+E+ DK++QLR++RGEDL GL 
Sbjct: 61  RMRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLN 120

Query: 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170
           +EELQ LE +LE GLSRV + KG+ +M++I +LE++G++L++ENK L+ K+
Sbjct: 121 LEELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDENKRLRDKL 171

Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XJ66|MAD22_ORYSJ MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1

 Score =  199 bits (505), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 133/170 (78%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MARE+ +I++I++  ARQVTFSKRRRGLFKKAEELSVLCDA+V +I+FS+TGKL   +SS
Sbjct: 1   MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SM +II +YN HS+N+ K   PSL+L LE+SKY  L+ ++A+ S +LRQMRGE+L GL+I
Sbjct: 61  SMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSI 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170
           +ELQ LE  LE GL RV+ TK  + M +IS L+RK ++L EEN  L+ +V
Sbjct: 121 DELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQV 170

Probable transcription factor. May be required for spikelet (rice flower) development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5K4R0|MAD47_ORYSJ MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2

 Score =  194 bits (493), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/171 (57%), Positives = 132/171 (77%), Gaps = 1/171 (0%)

Query: 3   REKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSM 62
           RE+I IR+IDN+ ARQVTFSKRRRGLFKKAEELS+LCDAEVG+++FSATGKLF+ +S+SM
Sbjct: 22  RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSM 81

Query: 63  KDIIARYNMHSSNISKLNHPSLELQLENSKYLS-LSREIADKSRQLRQMRGEDLHGLTIE 121
           + II RYN HS  + +     L+LQ E+S   + L  E+A+ S +LRQMRGE+LH L +E
Sbjct: 82  EQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVE 141

Query: 122 ELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRL 172
           +LQ LE  LE GL  VL+TK  +I++EI  LERK  +L+EEN  LK+++++
Sbjct: 142 QLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQV 192

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69TG5|MAD55_ORYSJ MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2

 Score =  169 bits (429), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 92/179 (51%), Positives = 122/179 (68%), Gaps = 23/179 (12%)

Query: 15  TARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSS 74
            ARQVTFSKRRRGLFKKAEEL+VLCDA+V +++FS+TGKL + +SS+M +II +Y  HS 
Sbjct: 15  AARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSK 74

Query: 75  NISKLN-HPSLE----------------------LQLENSKYLSLSREIADKSRQLRQMR 111
           N+ K +  PS++                      LQLE+SK  SL+ ++A+ S QLRQMR
Sbjct: 75  NLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMR 134

Query: 112 GEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170
           GE+L GL++EELQ +E  LE GL RVL TK  + M EIS L+RKG +L EEN  L+ ++
Sbjct: 135 GEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQM 193

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score =  153 bits (387), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/177 (48%), Positives = 115/177 (64%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           M R KI I++I+N T+RQVTFSKRR GL KKA+EL++LCDAEVGVIIFS+TG+L++ SSS
Sbjct: 1   MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SMK +I RY+      S  N P+ E+Q    +   L R++ +     RQM GE+L GL++
Sbjct: 61  SMKSVIERYSDAKGETSSENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLSV 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWN 177
           E LQ+LE  LE  L  V   K   ++ EI  L R+G  + +EN +L +KV L    N
Sbjct: 121 EALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLHKKVNLMHQQN 177

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2

 Score =  152 bits (385), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 121/181 (66%), Gaps = 2/181 (1%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           M R KI IR+IDN T+RQVTFSKRR G+FKKA+EL++LCDAEVG++IFS+TG+L+E SS+
Sbjct: 1   MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SMK +I RY         + +P+ EL+    +  SL +++ +     RQ+ GEDL GL +
Sbjct: 61  SMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNV 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIM-NEISTLERKGAKLLEENKNLKQKVRLFDLWNHH 179
           +ELQ LE  LE  L R ++TK D ++ +EI  L RKG+ + +EN  L +K+ L    N  
Sbjct: 121 KELQSLENQLEISL-RSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIRQENAE 179

Query: 180 L 180
           L
Sbjct: 180 L 180

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1

 Score =  137 bits (344), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 106/155 (68%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           M R KI+I++IDN T+RQVTFSKRR GLFKKA ELS+LCDAEVG+++FS+T +L++ +SS
Sbjct: 1   MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SMK II RYN    +  +  + S E +L   +  SL +++ +     RQ+ G+ L GL +
Sbjct: 61  SMKSIIERYNETKEDPHQTMNASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDV 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 155
           E+LQ+LE+ LE  L  +   K + +M++I  L RK
Sbjct: 121 EDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SZJ6|AGL21_ARATH Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 111/171 (64%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           M R KI I++ID+ T+RQVTFSKRR+GL KKA+EL++LCDAEVG+IIFS+TGKL++ +SS
Sbjct: 1   MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SMK +I RYN       +L +P+ E++    +   L +E+       RQM GE L+GL++
Sbjct: 61  SMKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSV 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVR 171
            EL  LE  +E  L  +   K   +  EI  L +K   + +EN +L +KV+
Sbjct: 121 NELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQ 171

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
224063317	225	MADS9, AGL24 mads-box transcription fact	0.928	0.755	0.805	1e-73
40806814	225	MADS box transcription factor [Populus t	0.928	0.755	0.794	3e-72
224081933	227	predicted protein [Populus trichocarpa]	0.928	0.748	0.770	2e-69
225459099	226	PREDICTED: MADS-box protein SVP [Vitis v	0.945	0.765	0.745	9e-68
375155238	232	SVP3 [Actinidia chinensis]	0.939	0.741	0.720	1e-63
316890774	227	MADS-box protein STMADS11 subfamily [Cof	0.945	0.762	0.728	2e-63
375155230	230	SVP3 [Actinidia deliciosa]	0.928	0.739	0.729	3e-63
147769366	208	hypothetical protein VITISV_009637 [Viti	0.846	0.745	0.774	5e-62
449451385	228	PREDICTED: MADS-box protein SVP-like [Cu	0.989	0.793	0.683	2e-61
110741167	240	short vegegative phase protein [Arabidop	0.994	0.758	0.661	4e-61

>gi|224063317|ref|XP_002301093.1| MADS9, AGL24 mads-box transcription factor [Populus trichocarpa] gi|222842819|gb|EEE80366.1| MADS9, AGL24 mads-box transcription factor [Populus trichocarpa]

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 137/170 (80%), Positives = 156/170 (91%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MAREKIKI+KIDN+TARQVTFSKRRRGLFKKAEELSVLCDAEV VIIFSATGKLFE SSS
Sbjct: 1   MAREKIKIKKIDNVTARQVTFSKRRRGLFKKAEELSVLCDAEVAVIIFSATGKLFEYSSS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SMKD++ARYN+HS+N+ K+N PSLELQLENS ++ LS+E+++KS QLR+MRGEDLHGL I
Sbjct: 61  SMKDVLARYNLHSNNLDKINPPSLELQLENSNHMRLSKEVSEKSHQLRRMRGEDLHGLNI 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170
           EELQ LE  LE GLSRVL+TKG+RIMNEISTLERKG +LLEENK LKQK+
Sbjct: 121 EELQQLEKALEVGLSRVLETKGERIMNEISTLERKGVQLLEENKQLKQKI 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40806814|gb|AAR92206.1| MADS box transcription factor [Populus tomentosa]

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 135/170 (79%), Positives = 154/170 (90%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MAREKIKI+KIDN+TARQVTFSKRRRGLFKKAEELSVLCDAEV VIIFSATGKLFE SSS
Sbjct: 1   MAREKIKIKKIDNVTARQVTFSKRRRGLFKKAEELSVLCDAEVAVIIFSATGKLFEYSSS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SMK ++ARYN+HS+N+ K+N PSLELQLENS ++ LS+E+++KS QLR+MRGEDL GL I
Sbjct: 61  SMKGVLARYNLHSNNLDKINQPSLELQLENSNHMRLSKEVSEKSHQLRRMRGEDLQGLNI 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170
           EELQ LE  LE GLSRVL+TKG+RIMNEISTLERKG +LLEENK LKQK+
Sbjct: 121 EELQQLEKALEVGLSRVLETKGERIMNEISTLERKGVQLLEENKQLKQKI 170

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081933|ref|XP_002306534.1| predicted protein [Populus trichocarpa] gi|222855983|gb|EEE93530.1| predicted protein [Populus trichocarpa]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/170 (77%), Positives = 152/170 (89%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MAREKIKI+KIDN+ ARQVTFSKRRRGL KKAEELSVLCD EV VIIFSATGKLFE SSS
Sbjct: 1   MAREKIKIKKIDNVAARQVTFSKRRRGLLKKAEELSVLCDVEVAVIIFSATGKLFEYSSS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SMKD++ARYN+HS+N+ KLN PSLELQLENS ++ L +E+++KS QLR+MRGE+L GL I
Sbjct: 61  SMKDVLARYNLHSNNLDKLNQPSLELQLENSNHMRLRKEVSEKSHQLRRMRGEELQGLNI 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170
           EELQ LE +LE GL  VL+TKG+RIMNEISTLERKGA+LLEENK+LKQK+
Sbjct: 121 EELQQLEKVLEVGLCCVLETKGERIMNEISTLERKGAQLLEENKHLKQKM 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459099|ref|XP_002285687.1| PREDICTED: MADS-box protein SVP [Vitis vinifera] gi|302142059|emb|CBI19262.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (667), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 129/173 (74%), Positives = 150/173 (86%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MAREKIKIRKIDN++ARQVTFSKRRRGLFKKAEELSVLCDAEV +IIFS+TGKLF+ SSS
Sbjct: 1   MAREKIKIRKIDNVSARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSSTGKLFDYSSS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SMKDI+ RY MHS+N+ KL  PSLELQLENS ++ LS+EIADKS QLRQMRGED+ GL I
Sbjct: 61  SMKDILGRYTMHSNNLEKLEGPSLELQLENSNHVRLSKEIADKSHQLRQMRGEDIQGLNI 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLF 173
           EEL  LE MLE GLSRVL++K DRIM EI+TL+ KGA+L+EEN  L+QK+ + 
Sbjct: 121 EELLKLEKMLEAGLSRVLKSKSDRIMTEIATLQTKGAQLMEENNKLRQKMEII 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|375155238|gb|AFA37969.1| SVP3 [Actinidia chinensis]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/172 (72%), Positives = 154/172 (89%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MAREKIKI+KIDNITARQVTFSKRRRGLFKKAEEL+VLCDAEV +IIFSATGKLFE +SS
Sbjct: 1   MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELAVLCDAEVALIIFSATGKLFEYASS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SM DII +Y++H++NI +++ PSL LQLE+S  + L +++++K+ QLRQMRGEDL GL I
Sbjct: 61  SMSDIIGKYSLHTNNIEQIDQPSLALQLEDSNLVKLGKDVSEKTTQLRQMRGEDLQGLNI 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRL 172
            ELQHLE MLE GLSRVL+TKG+RIMNEI+TL+RKGA+L+EEN+ LKQK+++
Sbjct: 121 NELQHLEKMLEAGLSRVLETKGERIMNEIATLQRKGAELVEENQRLKQKLQM 172

Source: Actinidia chinensis

Species: Actinidia chinensis

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316890774|gb|ADU56833.1| MADS-box protein STMADS11 subfamily [Coffea arabica]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 151/173 (87%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MAREKIKI+KIDNITARQVTFSKRRRGLFKKAEEL+VLCDA+V +IIFSATGKLFE +SS
Sbjct: 1   MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELAVLCDADVALIIFSATGKLFEFASS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SM DI+ +Y +HSSN+ K   PSLELQLENS ++ LS+E+AD++ QLRQM+GEDL GL I
Sbjct: 61  SMSDILGKYKLHSSNLEKTEQPSLELQLENSCHVRLSKEVADRTHQLRQMKGEDLQGLKI 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLF 173
           EELQ LE +LE GL+RVLQTKG+RIMNEI+ L++KGA+L EENK LKQK+ + 
Sbjct: 121 EELQQLEKVLEAGLTRVLQTKGERIMNEINALQKKGAELFEENKQLKQKMAML 173

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|375155230|gb|AFA37965.1| SVP3 [Actinidia deliciosa]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 152/170 (89%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MAREKIKI+KIDNITARQVTFSKRRRGLFKKAEEL+VLCDAEV +IIFSATGKLFE +SS
Sbjct: 1   MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELAVLCDAEVALIIFSATGKLFEYASS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SM DII +Y++H++NI +++ PSL LQLE+S  + L +++++K+ QLRQMRGEDL GL I
Sbjct: 61  SMSDIIGKYSLHTNNIEQIDQPSLALQLEDSNLVKLGKDVSEKTTQLRQMRGEDLQGLNI 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKV 170
            ELQHLE MLE GLSRVL+TKG+RIMNEI+TL+RKGA+L+EEN+ LKQK+
Sbjct: 121 NELQHLEKMLEAGLSRVLETKGERIMNEIATLQRKGAELVEENQRLKQKM 170

Source: Actinidia deliciosa

Species: Actinidia deliciosa

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769366|emb|CAN68106.1| hypothetical protein VITISV_009637 [Vitis vinifera]

 Score =  242 bits (617), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 120/155 (77%), Positives = 136/155 (87%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MAREKIKIRKIDN++ARQVTFSKRRRGLFKKAEELSVLCDAEV +IIFS+TGKLF+ SSS
Sbjct: 1   MAREKIKIRKIDNVSARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSSTGKLFDYSSS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
           SMKDI+ RY MHS+N+ KL  PSLELQLENS ++ LS+EIADKS QLRQMRGED+ GL I
Sbjct: 61  SMKDILGRYTMHSNNLEKLEGPSLELQLENSNHVRLSKEIADKSHQLRQMRGEDIQGLNI 120

Query: 121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 155
           EEL  LE MLE GLSRVL++K DRIM EI+TL+ K
Sbjct: 121 EELLKLEKMLEAGLSRVLKSKSDRIMTEIATLQTK 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451385|ref|XP_004143442.1| PREDICTED: MADS-box protein SVP-like [Cucumis sativus]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/183 (68%), Positives = 148/183 (80%), Gaps = 2/183 (1%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MA+EKI+IRKIDN TARQVTFSKRRRGLFKKA+ELSVLCDA+V +IIFSATGKLFE SSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQL-ENSKYLSLSREIADKSRQLRQMRGEDLHGLT 119
           SMK II R+N+HS N+ KL  PSLELQL ENS Y  L++EIA+K+ QLRQMRGE+L  L 
Sbjct: 61  SMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120

Query: 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWNHH 179
           IEELQ LE  LE GLSRV++ KG+RIM EI+ L+RK A+L++ENK LKQ+    +    H
Sbjct: 121 IEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMN-GVRH 179

Query: 180 LGF 182
           LG 
Sbjct: 180 LGV 182

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110741167|dbj|BAE98676.1| short vegegative phase protein [Arabidopsis thaliana]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 121/183 (66%), Positives = 149/183 (81%), Gaps = 1/183 (0%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           MAREKI+IRKIDN TARQVTFSKRRRGLFKKAEELSVLCDA+V +IIFS+TGKLFE  SS
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61  SMKDIIARYNMHSSNISKLNHPSLELQL-ENSKYLSLSREIADKSRQLRQMRGEDLHGLT 119
           SMK+++ R+N+ S N+ KL+ PSLELQL ENS +  +S+EIADKS +LRQMRGE+L GL 
Sbjct: 61  SMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLD 120

Query: 120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLWNHH 179
           IEELQ LE  LE GL+RV++TK D+IM+EIS L++KG +L++ENK L+Q+       N  
Sbjct: 121 IEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQGTQLTEENER 180

Query: 180 LGF 182
           LG 
Sbjct: 181 LGM 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2041233	240	SVP "AT2G22540" [Arabidopsis t	0.852	0.65	0.713	8.9e-54
TAIR|locus:2121924	220	AGL24 "AT4G24540" [Arabidopsis	0.857	0.713	0.658	6.5e-51
UNIPROTKB|Q9XJ66	228	MADS22 "MADS-box transcription	0.857	0.688	0.598	4.4e-45
UNIPROTKB|Q5K4R0	246	MADS47 "MADS-box transcription	0.836	0.621	0.603	1e-43
TAIR|locus:2082618	240	AGL16 "AGAMOUS-like 16" [Arabi	0.983	0.75	0.461	8.3e-35
TAIR|locus:2042182	234	AGL44 "AGAMOUS-like 44" [Arabi	0.841	0.658	0.515	2.6e-31
TAIR|locus:2121070	228	AGL21 "AT4G37940" [Arabidopsis	0.846	0.679	0.464	1.4e-30
TAIR|locus:2066050	227	AGL17 "AGAMOUS-like 17" [Arabi	0.841	0.678	0.461	1.3e-29
UNIPROTKB|Q9ATE3	215	FBP28 "MADS-box transcription	0.830	0.706	0.467	7.1e-29
UNIPROTKB|D2T2F8	249	grcd4 "GRCD4 protein" [Gerbera	0.846	0.622	0.435	2.8e-27

TAIR|locus:2041233 SVP "AT2G22540" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 112/157 (71%), Positives = 135/157 (85%)

Query:     1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
             MAREKI+IRKIDN TARQVTFSKRRRGLFKKAEELSVLCDA+V +IIFS+TGKLFE  SS
Sbjct:     1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query:    61 SMKDIIARYNMHSSNISKLNHPSLELQL-ENSKYLSLSREIADKSRQLRQMRGEDLHGLT 119
             SMK+++ R+N+ S N+ KL+ PSLELQL ENS +  +S+EIADKS +LRQMRGE+L GL 
Sbjct:    61 SMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLD 120

Query:   120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKG 156
             IEELQ LE  LE GL+RV++TK D+IM+EIS L++KG
Sbjct:   121 IEELQQLEKALETGLTRVIETKSDKIMSEISELQKKG 157

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048438 "floral whorl development" evidence=IGI

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2121924 AGL24 "AT4G24540" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 104/158 (65%), Positives = 135/158 (85%)

Query:     1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
             MAREKI+I+KIDNITARQVTFSKRRRG+FKKA+ELSVLCDA+V +IIFSATGKLFE SSS
Sbjct:     1 MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query:    61 SMKDIIARYNMHSSNISKL-NHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLT 119
              M+DI+ RY++H+SNI+KL + PS  L+LEN     LS+E+ DK++QLR++RGEDL GL 
Sbjct:    61 RMRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLN 120

Query:   120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGA 157
             +EELQ LE +LE GLSRV + KG+ +M++I +LE++G+
Sbjct:   121 LEELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGS 158

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010220 "positive regulation of vernalization response" evidence=IEP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048438 "floral whorl development" evidence=IGI

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q9XJ66 MADS22 "MADS-box transcription factor 22" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 94/157 (59%), Positives = 124/157 (78%)

Query:     1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
             MARE+ +I++I++  ARQVTFSKRRRGLFKKAEELSVLCDA+V +I+FS+TGKL   +SS
Sbjct:     1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS 60

Query:    61 SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
             SM +II +YN HS+N+ K   PSL+L LE+SKY  L+ ++A+ S +LRQMRGE+L GL+I
Sbjct:    61 SMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSI 120

Query:   121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGA 157
             +ELQ LE  LE GL RV+ TK  + M +IS L+RK +
Sbjct:   121 DELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSS 157

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IMP

UNIPROTKB|Q5K4R0 MADS47 "MADS-box transcription factor 47" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 93/154 (60%), Positives = 119/154 (77%)

Query:     3 REKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSM 62
             RE+I IR+IDN+ ARQVTFSKRRRGLFKKAEELS+LCDAEVG+++FSATGKLF+ +S+SM
Sbjct:    22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSM 81

Query:    63 KDIIARYNMHSSNISKLNHPSLELQLENSKYLS-LSREIADKSRQLRQMRGEDLHGLTIE 121
             + II RYN HS  + +     L+LQ E+S   + L  E+A+ S +LRQMRGE+LH L +E
Sbjct:    82 EQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVE 141

Query:   122 ELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 155
             +LQ LE  LE GL  VL+TK  +I++EI  LERK
Sbjct:   142 QLQELEKSLESGLGSVLKTKSKKILDEIDGLERK 175

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

TAIR|locus:2082618 AGL16 "AGAMOUS-like 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 83/180 (46%), Positives = 110/180 (61%)

Query:     1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
             M R KI I++I+N T+RQVTFSKRR GL KKA+EL++LCDAEVGVIIFS+TG+L++ SSS
Sbjct:     1 MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query:    61 SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
             SMK +I RY+      S  N P+ E+Q    +   L R++ +     RQM GE+L GL++
Sbjct:    61 SMKSVIERYSDAKGETSSENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLSV 120

Query:   121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAXXXXXXXXXXQKVRLFDLWNHHL 180
             E LQ+LE  LE  L  V   K   ++ EI  L R+G           +KV L    N  L
Sbjct:   121 EALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLHKKVNLMHQQNMEL 180

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010440 "stomatal lineage progression" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2042182 AGL44 "AGAMOUS-like 44" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 82/159 (51%), Positives = 107/159 (67%)

Query:     1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSS 59
             M R KI IR+IDN T+RQVTFSKRR GL KKA+ELS+LCDAEVGVIIFS+TGKL++ +S+
Sbjct:     1 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

Query:    60 SSMKDIIARYN-MHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGL 118
             SSMK II RYN +       LNH S E++    +  SL +++       R++ GE+L G+
Sbjct:    61 SSMKTIIERYNRVKEEQHQLLNHAS-EIKFWQREVASLQQQLQYLQECHRKLVGEELSGM 119

Query:   119 TIEELQHLETMLEQGLSRVLQTKGDRIM-NEISTLERKG 156
                +LQ+LE  L   L  V + K D++M NEI  L RKG
Sbjct:   120 NANDLQNLEDQLVTSLKGV-RLKKDQLMTNEIRELNRKG 157

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0007584 "response to nutrient" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0071249 "cellular response to nitrate" evidence=IEP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010167 "response to nitrate" evidence=IMP

TAIR|locus:2121070 AGL21 "AT4G37940" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 72/155 (46%), Positives = 101/155 (65%)

Query:     1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
             M R KI I++ID+ T+RQVTFSKRR+GL KKA+EL++LCDAEVG+IIFS+TGKL++ +SS
Sbjct:     1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query:    61 SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
             SMK +I RYN       +L +P+ E++    +   L +E+       RQM GE L+GL++
Sbjct:    61 SMKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSV 120

Query:   121 EELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 155
              EL  LE  +E  L  +   K   +  EI  L +K
Sbjct:   121 NELNSLENQIEISLRGIRMRKEQLLTQEIQELSQK 155

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2066050 AGL17 "AGAMOUS-like 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 72/156 (46%), Positives = 108/156 (69%)

Query:     1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
             M R KI I+KID+ T+RQVTFSKRR+GL KKA+EL++LCDAEV +IIFS T KL++ +SS
Sbjct:     1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

Query:    61 SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTI 120
             S+K  I R+N       +L +P+ E++    +  +L +E+       RQ+ G +L+GL++
Sbjct:    61 SVKSTIERFNTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSV 120

Query:   121 EELQHLETMLEQGLSRVLQTKGDRIM-NEISTLERK 155
             +ELQ++E+ LE  L R ++ K ++I+ NEI  L RK
Sbjct:   121 KELQNIESQLEMSL-RGIRMKREQILTNEIKELTRK 155

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048578 "positive regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q9ATE3 FBP28 "MADS-box transcription factor FBP28" [Petunia x hybrida (taxid:4102)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 73/156 (46%), Positives = 101/156 (64%)

Query:     1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
             M R K ++R+I+N T+RQVTFSKRR GL KKA ELSVLCDAEV +IIFS  GKL+E SSS
Sbjct:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSTRGKLYEFSSS 60

Query:    61 SMKDIIARYNMHSSNISKLNHPSLELQ-LENSKY--LSLSREIADKSRQLRQMRGEDLHG 117
             SM++II RY  HS ++     P++E   ++N K    SL ++I       R++ GEDL  
Sbjct:    61 SMQEIIERYRRHSEDVQG-EKPAVEQNNMQNLKLDAASLMKKIEILETSKRKLLGEDLGS 119

Query:   118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLE 153
              ++EELQ +E  LE+ +S +   K +    +I  L+
Sbjct:   120 CSLEELQQIEKQLERSISTIRARKMEVFREQIERLK 155

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|D2T2F8 grcd4 "GRCD4 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 68/156 (43%), Positives = 96/156 (61%)

Query:     1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSS 59
             M R ++++++I+N   RQVTF+KRR GL KKA ELSVLCDAEV +IIFS  GKL+E  SS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    60 SSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLT 119
             SSM   + +Y+  S    K + P  E Q    +YL L   +    R  R + GEDL  L 
Sbjct:    61 SSMVKTLEKYHSCSYGSLKASQPENESQYNYHEYLRLKARVEVLQRSQRNLLGEDLAPLN 120

Query:   120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 155
              +EL+ LE  LE  L ++  TK   ++++++ L+RK
Sbjct:   121 TKELEQLEHQLEMSLRKIRSTKTQSMLDQLADLQRK 156

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XJ66	MAD22_ORYSJ	No assigned EC number	0.5882	0.9289	0.7456	yes	no
Q9FVC1	SVP_ARATH	No assigned EC number	0.6612	0.9945	0.7583	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	3e-37
smart00432	59	smart00432, MADS, MADS domain	2e-29
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	2e-28
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	2e-25
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	8e-19
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-12
pfam01486	100	pfam01486, K-box, K-box region	4e-12

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  123 bits (310), Expect = 3e-37
 Identities = 48/74 (64%), Positives = 58/74 (78%)

Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
           R KI+I++I+N T RQVTFSKRR GL KKA ELSVLCDAEV +IIFS++GKL+E SS S
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 62 MKDIIARYNMHSSN 75
          M+ II RY   S +
Sbjct: 61 MEKIIERYQKTSGS 74

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  102 bits (257), Expect = 2e-29
 Identities = 41/58 (70%), Positives = 49/58 (84%)

Query: 3  REKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
          R KI+I++I+N T RQVTFSKRR GLFKKA ELSVLCDAEV +I+FS TGKL+E +S 
Sbjct: 2  RRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  100 bits (251), Expect = 2e-28
 Identities = 42/59 (71%), Positives = 50/59 (84%)

Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           R KI+I++I+N T+RQVTFSKRR GLFKKA ELSVLCDAEV VI+FS +GKL+E  SS
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 93.1 bits (232), Expect = 2e-25
 Identities = 40/74 (54%), Positives = 56/74 (75%), Gaps = 1/74 (1%)

Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSS 60
           R+KIKI++I+N   R VTFSKRR+GLFKKA ELS LC AEV VI++S +GKL+    SS
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 61 SMKDIIARYNMHSS 74
           ++ +I+R+ + S+
Sbjct: 61 EVEGVISRFEVLSA 74

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 75.5 bits (186), Expect = 8e-19
 Identities = 38/49 (77%), Positives = 43/49 (87%)

Query: 11 IDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS 59
          I+N + RQVTFSKRR G+FKKA ELSVLCDAEV VIIFS+TGKL+E SS
Sbjct: 3  IENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 64.7 bits (157), Expect = 1e-12
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
           +   KI I  I N T R VTFSKR+ G+ KKA ELSVL   EV +++ S  G +   ++ 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  SMKDIIARYN-MHSSNISKLNHPS 83
            ++ ++              N PS
Sbjct: 141 KLESVVKSLEGKSLIQSPCSNAPS 164

Length = 412

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 59.5 bits (145), Expect = 4e-12
 Identities = 29/66 (43%), Positives = 45/66 (68%)

Query: 105 RQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENK 164
           R+ R + GEDL  L+++ELQ LE  LE GL  +   K + ++N+I  L++K  +L EEN+
Sbjct: 33  REQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKNELLLNQIEELQKKERELQEENR 92

Query: 165 NLKQKV 170
           NL+QK+
Sbjct: 93  NLRQKL 98

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.98
smart00432	59	MADS MADS domain.	99.97
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.97
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.95
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.85
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.8
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.56
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.7
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	90.52
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.23
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	88.6
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	88.41
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	87.56
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	87.49
PRK13169	110	DNA replication intiation control protein YabA; Re	86.15
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	85.34
PRK10884	206	SH3 domain-containing protein; Provisional	84.85
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	84.1
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	82.68
smart00338	65	BRLZ basic region leucin zipper.	80.05

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=1.1e-39  Score=253.97  Aligned_cols=163  Identities=42%  Similarity=0.589  Sum_probs=127.3

Q ss_pred             CCccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcch--hHHHHHHhhhcccCccc
Q 030090            1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS--MKDIIARYNMHSSNISK   78 (183)
Q Consensus         1 mgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~--v~~vl~RY~~~~~~~~~   78 (183)
                      |||+||+|++|+|.++|+|||+|||+||||||+||||||||+||||||||+|++|+|++++  |.+|++||...+.....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999998865  99999999886554322


Q ss_pred             CCCCchHHH---------------------hhHHHHHHhHHHHHHHH---HHHHhhcCCCCCCCCH-HHHHHHHHHHHHH
Q 030090           79 LNHPSLELQ---------------------LENSKYLSLSREIADKS---RQLRQMRGEDLHGLTI-EELQHLETMLEQG  133 (183)
Q Consensus        79 ~~~~~~~~q---------------------~~~~~~~~Lk~eie~l~---~~lr~~~ge~l~~Ls~-~eL~~Le~~Le~~  133 (183)
                      .........                     ........+....+.+.   ...+++.|+++.+++. .+|..++.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            111111110                     01122333444444443   3367888999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 030090          134 LSRVLQTKGDRIMNEIS-TLERKGAKLLEEN  163 (183)
Q Consensus       134 L~~IR~rK~~ll~~~i~-~l~~k~~~l~~~n  163 (183)
                      +..++..+...+.+++. .++.++..+.+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKEKSLEAEN  191 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccchhccccC
Confidence            99999999988888776 5555555554433

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=3.3e-36  Score=200.93  Aligned_cols=73  Identities=66%  Similarity=0.958  Sum_probs=71.1

Q ss_pred             CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhhccc
Q 030090            2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSS   74 (183)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~~~~   74 (183)
                      ||+||+|++|+|+.+|++||+||++||||||+||||||||+||+|||||+|++|+|+||++++||+||...+.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999998764

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.98  E-value=5.1e-33  Score=188.18  Aligned_cols=75  Identities=53%  Similarity=0.819  Sum_probs=70.4

Q ss_pred             CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcch-hHHHHHHhhhcccCc
Q 030090            2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS-MKDIIARYNMHSSNI   76 (183)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~-v~~vl~RY~~~~~~~   76 (183)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|++++ +..++++|...+...
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~   76 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALE   76 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhh
Confidence            899999999999999999999999999999999999999999999999999999987754 999999999876543

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.97  E-value=2.9e-32  Score=172.07  Aligned_cols=59  Identities=69%  Similarity=1.037  Sum_probs=57.7

Q ss_pred             CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcc
Q 030090            2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS   60 (183)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~   60 (183)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999998875

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.97  E-value=1.2e-31  Score=169.29  Aligned_cols=59  Identities=71%  Similarity=1.026  Sum_probs=57.5

Q ss_pred             CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcc
Q 030090            2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS   60 (183)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~   60 (183)
                      ||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|++|+|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            89999999999999999999999999999999999999999999999999999998874

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.95  E-value=4.4e-30  Score=157.07  Aligned_cols=51  Identities=55%  Similarity=0.947  Sum_probs=47.1

Q ss_pred             eeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCc
Q 030090            9 RKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS   59 (183)
Q Consensus         9 k~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s   59 (183)
                      |+|+|++.|++||+||+.||||||+||||||||+||+|||||+|++|+|||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999987

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.85  E-value=1.2e-22  Score=162.67  Aligned_cols=66  Identities=39%  Similarity=0.587  Sum_probs=62.3

Q ss_pred             CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHH
Q 030090            2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIA   67 (183)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~   67 (183)
                      ||+||+|+||||+..|+|||||||.||||||+|||||+|.+|-|+|.|.+|-+|+|+.|.++.||.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~  128 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMIT  128 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccccccccc
Confidence            799999999999999999999999999999999999999999999999999999999976665554

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.80  E-value=1.2e-18  Score=122.10  Aligned_cols=89  Identities=35%  Similarity=0.518  Sum_probs=84.5

Q ss_pred             chHHHhhHHHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090           83 SLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEE  162 (183)
Q Consensus        83 ~~~~q~~~~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~  162 (183)
                      +...+.+..++.+|+.+++.++..+|++.|++|++||++||.+||..|+.+|.+||+||.+++++++..|++++..|.++
T Consensus        11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e   90 (100)
T PF01486_consen   11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE   90 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 030090          163 NKNLKQKVR  171 (183)
Q Consensus       163 n~~L~~~~~  171 (183)
                      |..|+.++.
T Consensus        91 n~~L~~~~~   99 (100)
T PF01486_consen   91 NNQLRQKIE   99 (100)
T ss_pred             HHHHHHHhc
Confidence            999999885

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.56  E-value=1.1e-15  Score=127.82  Aligned_cols=68  Identities=38%  Similarity=0.530  Sum_probs=64.2

Q ss_pred             CCccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHH
Q 030090            1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIAR   68 (183)
Q Consensus         1 mgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~R   68 (183)
                      |||+|+.|.+|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|.+|.+++|+.|..+.|+.-
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~  148 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS  148 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence            78999999999999999999999999999999999999999999999999999999999877766653

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.70  E-value=0.17  Score=33.02  Aligned_cols=49  Identities=29%  Similarity=0.436  Sum_probs=34.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090          118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVR  171 (183)
Q Consensus       118 Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~  171 (183)
                      |+++.+.+||..+..++..|.     ++..++..|+.+...|.++|..|.....
T Consensus         1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~   49 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENE   49 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            578899999999999999886     5555667777775555555555555544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.52  E-value=3.3  Score=26.76  Aligned_cols=52  Identities=21%  Similarity=0.451  Sum_probs=30.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090          118 LTIEELQHLETMLEQGLSRVL---------QTKGDRIMNEISTLERKGAKLLEENKNLKQK  169 (183)
Q Consensus       118 Ls~~eL~~Le~~Le~~L~~IR---------~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~  169 (183)
                      ||++=+.+||..+..++..|-         .-|++.+.++...++.....|..+|.+|+..
T Consensus         1 MSlEv~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e   61 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE   61 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466667777777777766653         1233344455555555555666666666544

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.23  E-value=4.7  Score=26.68  Aligned_cols=41  Identities=24%  Similarity=0.413  Sum_probs=30.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090          118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEEN  163 (183)
Q Consensus       118 Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n  163 (183)
                      ||++=|.+||..+..++..|-     ++.-+|+.|+.+...|.+++
T Consensus         1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~   41 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEV   41 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence            577888999999999988875     56666777777666555543

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=88.60  E-value=1  Score=31.80  Aligned_cols=27  Identities=37%  Similarity=0.486  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090          148 EISTLERKGAKLLEENKNLKQKVRLFD  174 (183)
Q Consensus       148 ~i~~l~~k~~~l~~~n~~L~~~~~~~~  174 (183)
                      ++..|+++.+.|+|||+.|+.+++-+.
T Consensus        73 e~~rlkkk~~~LeEENNlLklKievLL   99 (108)
T cd07429          73 EVLRLKKKNQQLEEENNLLKLKIEVLL   99 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888899999999999987654

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=88.41  E-value=0.077  Score=26.80  Aligned_cols=13  Identities=38%  Similarity=0.772  Sum_probs=10.3

Q ss_pred             eEEEEecCCCccc
Q 030090           43 VGVIIFSATGKLF   55 (183)
Q Consensus        43 vavivfs~~gk~~   55 (183)
                      ..+.+|||.|++|
T Consensus         3 ~~~t~FSp~Grl~   15 (23)
T PF10584_consen    3 RSITTFSPDGRLF   15 (23)
T ss_dssp             SSTTSBBTTSSBH
T ss_pred             CCceeECCCCeEE
Confidence            3456899999987

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=87.56  E-value=4.6  Score=24.49  Aligned_cols=39  Identities=28%  Similarity=0.298  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030090          134 LSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFDLW  176 (183)
Q Consensus       134 L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~  176 (183)
                      -.+.|.||    ...+..|......|..+|..|..++..+..|
T Consensus        16 A~r~R~rk----k~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen   16 ARRSRQRK----KQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34455555    3446778888999999999999999877654

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=87.49  E-value=6.8  Score=27.55  Aligned_cols=50  Identities=26%  Similarity=0.423  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090          120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD  174 (183)
Q Consensus       120 ~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~  174 (183)
                      ++.+.+|+.+|...+..|.+-|     .++..|-.....|.-||..|+..+....
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK-----~~~~~l~EEN~~L~~EN~~Lr~~l~~~~   56 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELK-----KQLQELLEENARLRIENEHLRERLEELE   56 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3556677777777766665444     3445566667777778888888776654

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=86.15  E-value=9.8  Score=26.91  Aligned_cols=49  Identities=22%  Similarity=0.309  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090          120 IEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLF  173 (183)
Q Consensus       120 ~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~  173 (183)
                      ++.+.+|+.+|...+..+.+-|     .++..|-.....|+-||..|+..+...
T Consensus         7 fd~l~~le~~l~~l~~el~~LK-----~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALK-----KQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567778888888777776544     444566667788888888888888865

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=85.34  E-value=2.5  Score=26.49  Aligned_cols=31  Identities=35%  Similarity=0.490  Sum_probs=25.6

Q ss_pred             hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 030090          109 QMRGEDLHGLTIEELQHLETMLEQGLSRVLQ  139 (183)
Q Consensus       109 ~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR~  139 (183)
                      +..|++|+.||++||..--..|+.-+.+++.
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~   42 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEA   42 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999988888877777654

The function of this family is unknown.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.85  E-value=17  Score=28.57  Aligned_cols=76  Identities=8%  Similarity=0.159  Sum_probs=39.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090           90 NSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVL--QTKGDRIMNEISTLERKGAKLLEENKNLK  167 (183)
Q Consensus        90 ~~~~~~Lk~eie~l~~~lr~~~ge~l~~Ls~~eL~~Le~~Le~~L~~IR--~rK~~ll~~~i~~l~~k~~~l~~~n~~L~  167 (183)
                      ...+..++.+++.++.++..+.++ .    -....++...+...-..+.  ...++-+.+++..++.+...|..+|..++
T Consensus        92 ~~rlp~le~el~~l~~~l~~~~~~-~----~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884         92 RTRVPDLENQVKTLTDKLNNIDNT-W----NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677777887777777665432 1    1222333333333222222  23344456666666666666666666666


Q ss_pred             HHH
Q 030090          168 QKV  170 (183)
Q Consensus       168 ~~~  170 (183)
                      ..+
T Consensus       167 ~~~  169 (206)
T PRK10884        167 RTI  169 (206)
T ss_pred             HHH
Confidence            544

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=84.10  E-value=3.3  Score=25.77  Aligned_cols=28  Identities=36%  Similarity=0.527  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090          143 DRIMNEISTLERKGAKLLEENKNLKQKV  170 (183)
Q Consensus       143 ~ll~~~i~~l~~k~~~l~~~n~~L~~~~  170 (183)
                      +.+.++|..|..+...|+.||..|+..+
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~   44 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQNA   44 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4677888889899999999999888765

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=82.68  E-value=10  Score=24.24  Aligned_cols=51  Identities=31%  Similarity=0.348  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090          122 ELQHLETMLEQGLSRVLQTKG--DRIMNEISTLERKGAKLLEENKNLKQKVRL  172 (183)
Q Consensus       122 eL~~Le~~Le~~L~~IR~rK~--~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~  172 (183)
                      +|..|+..|+..+.....-+.  .++.++...++..-..|.+.|..=+.+|+.
T Consensus         1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa   53 (65)
T TIGR02449         1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA   53 (65)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477888888887776644332  255555666665555666666666666654

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>smart00338 BRLZ basic region leucin zipper

Probab=80.05  E-value=12  Score=23.40  Aligned_cols=36  Identities=36%  Similarity=0.455  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090          135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD  174 (183)
Q Consensus       135 ~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~  174 (183)
                      .+.|.||.    ..+..|..+...|..+|..|..++..+.
T Consensus        18 ~~~R~rKk----~~~~~Le~~~~~L~~en~~L~~~~~~l~   53 (65)
T smart00338       18 RRSRERKK----AEIEELERKVEQLEAENERLKKEIERLR   53 (65)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555553    4567788888888888888888887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		1e-14
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		3e-14
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		3e-14
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		4e-14
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		7e-14
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		2e-13
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		4e-09
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		7e-07
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		1e-06

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 53/73 (72%)
Query: 1  MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
          M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF++  +LF+ +S+
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 SMKDIIARYNMHS 73
           M  ++ +Y  +S
Sbjct: 61 DMDRVLLKYTEYS 73

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 52/71 (73%)
Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
           R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 MKDIIARYNMH 72
          M  ++ +Y  +
Sbjct: 61 MDKVLLKYTAY 71

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 53/72 (73%)
Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
           R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 MKDIIARYNMHS 73
          M  ++ +Y  ++
Sbjct: 61 MDKVLLKYTEYN 72

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 53/72 (73%)
Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
           R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 MKDIIARYNMHS 73
          M  ++ +Y  ++
Sbjct: 61 MDKVLLKYTEYN 72

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 52/72 (72%)
Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
           R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF++  +LF+ +S+ 
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 62 MKDIIARYNMHS 73
          M  ++ +Y  +S
Sbjct: 61 MDRVLLKYTEYS 72

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 53/72 (73%)
Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
           R+KI+I +I +   RQVTF+KR+ GL KKA ELSVL DAE+ +IIF+++ KLF+ +S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 62 MKDIIARYNMHS 73
          M  ++ +Y  ++
Sbjct: 61 MDKVLLKYTEYN 72

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 3   REKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSM 62
           R KI+I+ I+N T R VTFSKR+ G+ KKA ELSVL   +V +++ S TG ++  S+   
Sbjct: 18  RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 77
Query: 63  KDIIARYNMHSSNISKLNHPSLE 85
           + I+ +    +   + LN P  E
Sbjct: 78  EPIVTQQEGRNLIQACLNAPDDE 100

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
           R KIK+  IDN   R  TFSKR+ G+ KKA ELS L   +V +++ S TG ++  ++  
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 70
Query: 62 MKDIIARYNMHSSNISKLNHP 82
          ++ +I      +   + LN P
Sbjct: 71 LQPMITSETGKALIQTCLNSP 91

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
           R KIK+  IDN   R  TFSKR+ G+ KKA ELS L   +V +++ S TG ++  ++  
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 69
Query: 62 MKDIIARYNMHSSNISKLNHP 82
          ++ +I      +   + LN P
Sbjct: 70 LQPMITSETGKALIQTCLNSP 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	2e-37
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	5e-37
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	7e-37
1hbx_A	92	SRF, serum response factor; gene regulation, trans	4e-36
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-35

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  124 bits (312), Expect = 2e-37
 Identities = 33/85 (38%), Positives = 50/85 (58%)

Query: 1   MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
             R KI+I+ I+N T R VTFSKR+ G+ KKA ELSVL   +V +++ S TG ++  S+ 
Sbjct: 16  KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61  SMKDIIARYNMHSSNISKLNHPSLE 85
             + I+ +    +   + LN P  E
Sbjct: 76  KFEPIVTQQEGRNLIQACLNAPDDE 100

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  122 bits (308), Expect = 5e-37
 Identities = 35/87 (40%), Positives = 56/87 (64%)

Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
           R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 MKDIIARYNMHSSNISKLNHPSLELQL 88
          M  ++ +Y  ++       +  +   L
Sbjct: 61 MDKVLLKYTEYNEPHESRTNSDIVEAL 87

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  122 bits (308), Expect = 7e-37
 Identities = 29/91 (31%), Positives = 48/91 (52%)

Query: 1  MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
            R KIK+  IDN   R  TFSKR+ G+ KKA ELS L   +V +++ S TG ++  ++ 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 SMKDIIARYNMHSSNISKLNHPSLELQLENS 91
           ++ +I      +   + LN P    + + +
Sbjct: 69 KLQPMITSETGKALIQTCLNSPDSPPRSDPT 99

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  120 bits (302), Expect = 4e-36
 Identities = 29/82 (35%), Positives = 45/82 (54%)

Query: 1  MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS 60
            R KIK+  IDN   R  TFSKR+ G+ KKA ELS L   +V +++ S TG ++  ++ 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 SMKDIIARYNMHSSNISKLNHP 82
           ++ +I      +   + LN P
Sbjct: 70 KLQPMITSETGKALIQTCLNSP 91

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  118 bits (298), Expect = 1e-35
 Identities = 34/74 (45%), Positives = 53/74 (71%)

Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
           R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 MKDIIARYNMHSSN 75
          M  ++ +Y  ++  
Sbjct: 61 MDKVLLKYTEYNEP 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.18
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	90.22
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	89.52
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	86.03
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	82.24
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	82.13
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	81.02

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=2.4e-41  Score=223.36  Aligned_cols=74  Identities=46%  Similarity=0.753  Sum_probs=70.2

Q ss_pred             CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhhcccC
Q 030090            2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSN   75 (183)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~~~~~   75 (183)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+|++|++|++||+..+++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~   74 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999987643

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=6.7e-41  Score=226.39  Aligned_cols=76  Identities=45%  Similarity=0.725  Sum_probs=73.3

Q ss_pred             CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhhcccCcc
Q 030090            2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNIS   77 (183)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~~~~~~~   77 (183)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+|++||+||+.+++...
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~   76 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHE   76 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999876544

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=4.6e-39  Score=220.95  Aligned_cols=71  Identities=41%  Similarity=0.584  Sum_probs=69.6

Q ss_pred             CCccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhh
Q 030090            1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNM   71 (183)
Q Consensus         1 mgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~   71 (183)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||++..|+++|..
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G   86 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999964

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=5.8e-39  Score=217.75  Aligned_cols=70  Identities=37%  Similarity=0.520  Sum_probs=68.6

Q ss_pred             CCccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhh
Q 030090            1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYN   70 (183)
Q Consensus         1 mgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~   70 (183)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+|+.+|++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999775

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=2.9e-38  Score=218.27  Aligned_cols=69  Identities=38%  Similarity=0.525  Sum_probs=67.8

Q ss_pred             CCccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHh
Q 030090            1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARY   69 (183)
Q Consensus         1 mgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY   69 (183)
                      |||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+|+.||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999974

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.18  E-value=1.5  Score=28.29  Aligned_cols=43  Identities=26%  Similarity=0.434  Sum_probs=32.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090          118 LTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKN  165 (183)
Q Consensus       118 Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~  165 (183)
                      ||++=|.+||..+..++..|-     ++.-+|+.|+.+...|.++|..
T Consensus         3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            788889999999999998774     5566667777766665554444

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=90.22  E-value=2.5  Score=28.16  Aligned_cols=35  Identities=23%  Similarity=0.224  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 030090          146 MNEISTLERKGAKLLEENKNLKQKVRLFDLWNHHLGFP  183 (183)
Q Consensus       146 ~~~i~~l~~k~~~l~~~n~~L~~~~~~~~~~~~~~~~~  183 (183)
                      ..+|..|..+...|..+|..|...-   ..|.++.++|
T Consensus        64 ~~~v~eLe~everL~~ENq~L~~e~---~~~~~~~~~~   98 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLLTEN---ELHRQQERAP   98 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCC---
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH---HhhccccCCc
Confidence            4456777777777778887776654   4577776665

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=89.52  E-value=2.3  Score=25.65  Aligned_cols=52  Identities=29%  Similarity=0.402  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030090          117 GLTIEELQHLETMLEQGLSRVLQ--TKGDRIMNEISTLERKGAKLLEENKNLKQ  168 (183)
Q Consensus       117 ~Ls~~eL~~Le~~Le~~L~~IR~--rK~~ll~~~i~~l~~k~~~l~~~n~~L~~  168 (183)
                      ..++.|..++...|..+=.+|..  +-+.-+.+++..||++.+.|+.||..|+.
T Consensus         9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A            9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            36788888888888777555532  33445678899999999999999998863

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=86.03  E-value=3.9  Score=24.94  Aligned_cols=36  Identities=28%  Similarity=0.386  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090          135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD  174 (183)
Q Consensus       135 ~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~  174 (183)
                      .+.|.||    .+++..|..+...|..+|..|...+..+.
T Consensus        22 rrsR~RK----~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr   57 (63)
T 2dgc_A           22 RRSRARK----LQRMKQLEDKVEELLSKNYHLENEVARLK   57 (63)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555    45678899999999999999998887654

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=82.24  E-value=6.3  Score=23.87  Aligned_cols=36  Identities=14%  Similarity=0.208  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090          135 SRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD  174 (183)
Q Consensus       135 ~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~  174 (183)
                      .+-|.||    .+.+..|+.+...|..+|..|...+..+.
T Consensus        15 ~rcR~rK----k~~~~~Le~~v~~L~~~n~~L~~ei~~L~   50 (63)
T 2wt7_A           15 AKCRNRR----RELTDTLQAETDQLEDEKSALQTEIANLL   50 (63)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555    45578888889999999999988887544

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=82.13  E-value=5.9  Score=23.43  Aligned_cols=29  Identities=24%  Similarity=0.332  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030090          147 NEISTLERKGAKLLEENKNLKQKVRLFDL  175 (183)
Q Consensus       147 ~~i~~l~~k~~~l~~~n~~L~~~~~~~~~  175 (183)
                      ..++.|..+...|..+|..|..++..+..
T Consensus        22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~   50 (55)
T 1dh3_A           22 EYVKSLENRVAVLENQNKTLIEELKALKD   50 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999999999999987653

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=81.02  E-value=8.1  Score=24.27  Aligned_cols=54  Identities=19%  Similarity=0.217  Sum_probs=36.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030090          114 DLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLKQKVRLFD  174 (183)
Q Consensus       114 ~l~~Ls~~eL~~Le~~Le~~L~~IR~rK~~ll~~~i~~l~~k~~~l~~~n~~L~~~~~~~~  174 (183)
                      .+++++.  +.+|+..|......||.+-.     .|..|.+......++...|+.++..+.
T Consensus        14 ~~~~mgt--i~eLq~~L~~K~eELr~kd~-----~I~eLEk~L~ekd~eI~~LqseLDKfr   67 (72)
T 3nmd_A           14 SIEGRGS--LRDLQYALQEKIEELRQRDA-----LIDELELELDQKDELIQMLQNELDKYR   67 (72)
T ss_dssp             -----CH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcccCCc--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555554  88888888888888875543     257777777777778888888887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-31
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-31
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	2e-31

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 1e-31
 Identities = 29/80 (36%), Positives = 45/80 (56%)

Query: 3  REKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSM 62
          R KIK+  IDN   R  TFSKR+ G+ KKA ELS L   +V +++ S TG ++  ++  +
Sbjct: 4  RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKL 63

Query: 63 KDIIARYNMHSSNISKLNHP 82
          + +I      +   + LN P
Sbjct: 64 QPMITSETGKALIQTCLNSP 83

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (267), Expect = 2e-31
 Identities = 34/70 (48%), Positives = 52/70 (74%)

Query: 3  REKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSM 62
          R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ M
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 63 KDIIARYNMH 72
            ++ +Y  +
Sbjct: 62 DKVLLKYTEY 71

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (267), Expect = 2e-31
 Identities = 32/81 (39%), Positives = 49/81 (60%)

Query: 2  AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS 61
           R KI+I+ I+N T R VTFSKR+ G+ KKA ELSVL   +V +++ S TG ++  S+  
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 62 MKDIIARYNMHSSNISKLNHP 82
           + I+ +    +   + LN P
Sbjct: 63 FEPIVTQQEGRNLIQACLNAP 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-41  Score=217.41  Aligned_cols=71  Identities=48%  Similarity=0.784  Sum_probs=69.4

Q ss_pred             CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhhc
Q 030090            2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMH   72 (183)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~~   72 (183)
                      ||+||+|++|+|+..|+|||+|||+||||||+||||||||+||||||||+|++|+|+||++++|++||..+
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999753

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-39  Score=212.15  Aligned_cols=71  Identities=37%  Similarity=0.497  Sum_probs=69.6

Q ss_pred             CCccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhh
Q 030090            1 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNM   71 (183)
Q Consensus         1 mgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~   71 (183)
                      +||+||+|++|+|+..|+|||+|||.||||||+||||||||+||||||||+|++|+|+||++++|+++|..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999975

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-38  Score=210.34  Aligned_cols=71  Identities=41%  Similarity=0.593  Sum_probs=69.5

Q ss_pred             CccccceeeecCCcccccccccccchhhhhHHhhhhhcCcceEEEEecCCCcccccCcchhHHHHHHhhhc
Q 030090            2 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMH   72 (183)
Q Consensus         2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKA~ELs~LCd~~vavivfs~~gk~~~~~s~~v~~vl~RY~~~   72 (183)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+|+.|++||...
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~   73 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   73 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999864