Citrus Sinensis ID: 030093

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MSPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
Secondary Structure (PSIPRED)
cccEEEccccccEEEEEEEEEcccccEEEEEEEEccccccccccccEEEccccEEEEEEEEEcccccccccccccccccEEEEEEEEEcccccccHHHHHccccccEEEEEEEEEEccccccccHHHHHHHHHccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccEEccccccEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEcccccccHHHHccccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEcEEEEHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mspiffqdeAGKQVRSAIKIKNtskshvafkfqttapkscfmrppgailapgeSLIATVFKFvelpennekpmyqksRDKFKIISMKVkadvdyvpelfdeQKDQTAAEQILRVVflnperpepALEKLKRQLADADAAVAarkkppedtgpriigeglvIDEWKERRERYLARQQVEGVDSV
Flexible Loop (DISEMBL)
mspiffqdeagkQVRSAIKikntskshvaFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVelpennekpmyqksrdkFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVaarkkppedtgpriigeglvidewKERRERYlarqqvegvdsv
Low Complexity Region (SEG)
MSPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLadadaavaaRKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
Disordered region (IsUnstruct)
**************************HVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP*************KFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL************************************IIGEGLVIDEWKE*****************
Disordered Region (DISOPRED)
MSPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV*****************FKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF************************************************KERRERYLA***VE*****
Disordered Region (DISEMBL)
MSPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQ***************EDTGPRIIGEGLVIDEWKERRERYL***********
Disordered Region (DISPRO)
*SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q8VYN2	295	Vesicle-associated protei	yes	no	0.983	0.610	0.822	2e-82
Q1ECE0	266	Vesicle-associated protei	no	no	0.994	0.684	0.754	2e-76
Q8LPQ7	287	Vesicle-associated protei	no	no	0.972	0.620	0.727	5e-65
Q9LVU1	220	Vesicle-associated protei	no	no	0.644	0.536	0.32	1e-07
Q8VZ95	256	Vesicle-associated protei	no	no	0.617	0.441	0.283	2e-06
B9DHD7	386	Vesicle-associated protei	no	no	0.622	0.295	0.311	7e-06
Q84WW5	239	Vesicle-associated protei	no	no	0.612	0.468	0.286	1e-05
Q9SHC8	239	Vesicle-associated protei	no	no	0.617	0.472	0.283	1e-05
P40075	244	Vesicle-associated membra	yes	no	0.469	0.352	0.340	2e-05
Q9SYC9	571	Vesicle-associated protei	no	no	0.841	0.269	0.244	0.0001

>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1

 Score =  304 bits (778), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/180 (82%), Positives = 164/180 (91%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           ++F  E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFV
Sbjct: 116 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFV 175

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 123
           E PENNEKPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PER  
Sbjct: 176 EPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSN 235

Query: 124 PALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 183
           PALEKLKRQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 236 PALEKLKRQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADSV 295

May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1

 Score =  284 bits (727), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/183 (75%), Positives = 161/183 (87%), Gaps = 1/183 (0%)

Query: 2   SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61
           S ++F  E GKQVRSAIK+KNTSKSH AFKFQTTAPKSC+MRPPG +LAPGES+ ATVFK
Sbjct: 83  SYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFATVFK 142

Query: 62  FVELPENNEK-PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120
           FVE PENNEK P+ QKS+ KFKI+S+KVK  V+YVPELFDEQKDQ A EQ+LRV+F++ +
Sbjct: 143 FVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPELFDEQKDQVAVEQVLRVIFIDAD 202

Query: 121 RPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGV 180
           RP  ALEKLKRQL +A+AAV ARKKPP +TGPR++GEGLVIDEWKERRE+YLARQQVE V
Sbjct: 203 RPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGEGLVIDEWKERREKYLARQQVESV 262

Query: 181 DSV 183
           DS+
Sbjct: 263 DSL 265

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43 PE=2 SV=1

 Score =  246 bits (628), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 149/180 (82%), Gaps = 2/180 (1%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           ++F  E GKQVRSAIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IATVFKFV
Sbjct: 108 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFV 167

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 123
           E PENNEKPM QKS  KFKI+S+K+K   DY+PELF+EQKD  + EQ++RVVFL+PE P 
Sbjct: 168 EPPENNEKPMEQKSGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPENPN 227

Query: 124 PALEKLKRQLADADAAVAARKKPPED-TGPRIIGEGLVIDEWKERRERYLARQQVEGVDS 182
             +EKLK QLA+ADAA  ARKK  E   GP+ IGEGLVIDEWK+RRERYLA+QQ  GVD+
Sbjct: 228 SMMEKLKSQLAEADAADEARKKASEGIVGPKPIGEGLVIDEWKQRRERYLAQQQ-GGVDA 286

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 7/125 (5%)

Query: 6   FQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEL 65
           F  E  KQ    +K+ N ++++VAFK +TT+PK  F+RP   ++ P +S I      V L
Sbjct: 19  FLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIR----VTL 74

Query: 66  PENNEKPMYQKSRDKFKIISMKV--KADVDYVPE-LFDEQKDQTAAEQILRVVFLNPERP 122
               E P   + +DKF + S  V    DVD +P+  F +   +T  E  L+V ++ P   
Sbjct: 75  QAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITPSTT 134

Query: 123 EPALE 127
           + + E
Sbjct: 135 QRSSE 139

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 6   FQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEL 65
           F  E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P     +T    V +
Sbjct: 32  FPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR----STCEVLVTM 87

Query: 66  PENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFLNPERP 122
               E P   + +DKF +  +     V   +  PE+F ++      E  LRV ++ P RP
Sbjct: 88  QAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPRP 147

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 8/122 (6%)

Query: 6   FQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEL 65
           F  +  KQ    +++ NT+  +VAFK +TT+PK   +RP   ++AP  +   TV     +
Sbjct: 15  FAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI----M 70

Query: 66  PENNEKPMYQKSRDKFKIISMKVKA---DVDYVPELFDEQKDQTAAEQILRVVFLNP-ER 121
               E P     +DKF I S  V A   D D    +F + + +   E  LRV  + P + 
Sbjct: 71  QAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPSDS 130

Query: 122 PE 123
           PE
Sbjct: 131 PE 132

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 10/122 (8%)

Query: 9   EAGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 67
           E  KQ   ++++ N T+   VAFK +TT P+   +RP   ++ PG+S   T    V +  
Sbjct: 19  ELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVT----VTMQA 74

Query: 68  NNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFL--NPERP 122
             E P+  + +DKF + ++ V       + + E+F+++  +   +  LRVV++  NP  P
Sbjct: 75  QKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIPANPPSP 134

Query: 123 EP 124
            P
Sbjct: 135 VP 136

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)

Query: 6   FQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEL 65
           F  E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P  S        V +
Sbjct: 15  FPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSSEV----LVTM 70

Query: 66  PENNEKPMYQKSRDKF---KIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERP 122
               E P   + +DKF    +++       D   E+F ++      E  LRVV++ P RP
Sbjct: 71  QAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYVAPPRP 130

Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 4  IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
          + ++    +Q      I N S   +AFK +TTAPK   +RP  A++APGE++   V  F+
Sbjct: 11 LVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVI-FL 69

Query: 64 ELPENNEKPMYQ-KSRDKFKIISMKVKADVD 93
           L    E+P    K RDKF +I++    D++
Sbjct: 70 GL---TEEPAADFKCRDKFLVITLPSPYDLN 97

Targets proteins containing a FFAT motif to endoplasmic reticulum membranes. Regulates phospholipid biosynthesis by modulating the subcellular localization of the transcriptional repressor OPI1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 18/172 (10%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           I F  E  KQ   ++ + N + ++VAFK QTT PK   ++P   ++ P  S        V
Sbjct: 14  IRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSSCEV----LV 69

Query: 64  ELPENNEKPMYQKSRDKFKIISMKV----KADVDYVPELFDEQKDQTAAEQILRVVFLNP 119
            +    E P  ++ +DK  +   KV      D +   E+F ++      E I +++++ P
Sbjct: 70  VMQALKEAPADRQCKDKL-LFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKIIYVAP 128

Query: 120 ERPEPALEKLKRQLADADAAVAARKKPPED-TGP--------RIIGEGLVID 162
            +P+  +++     +   A+V+ +    E   GP        R+  E L+ID
Sbjct: 129 PQPQSPVQEGLEDGSSPSASVSDKGNASEVFVGPSVGIVDLIRMSDELLIID 180

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
224116236	235	predicted protein [Populus trichocarpa]	0.994	0.774	0.868	7e-86
255567425	281	structural molecule, putative [Ricinus c	0.983	0.640	0.861	2e-83
297804004	300	vesicle-associated membrane family prote	0.983	0.6	0.827	2e-81
18415696	295	vesicle-associated membrane family prote	0.983	0.610	0.822	1e-80
334186769	314	vesicle-associated membrane family prote	0.961	0.560	0.835	5e-80
224076792	233	predicted protein [Populus trichocarpa]	0.994	0.781	0.862	9e-80
388503260	266	unknown [Lotus japonicus]	0.983	0.676	0.772	8e-79
359495700	264	PREDICTED: vesicle-associated protein 4-	0.983	0.681	0.85	8e-79
357144664	235	PREDICTED: vesicle-associated protein 4-	0.994	0.774	0.807	6e-76
147801604	278	hypothetical protein VITISV_011094 [Viti	0.983	0.647	0.788	8e-76

>gi|224116236|ref|XP_002317246.1| predicted protein [Populus trichocarpa] gi|222860311|gb|EEE97858.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (823), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 158/182 (86%), Positives = 168/182 (92%)

Query: 2   SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61
           S ++F  E GKQVRSAI+IKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGES+IATVFK
Sbjct: 54  SKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFK 113

Query: 62  FVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 121
           FVELPENNEKPM QKS+ KFKI+S+KVK  +DYVPELFDEQKDQ A EQILRV+FL+PER
Sbjct: 114 FVELPENNEKPMEQKSKVKFKIMSLKVKGVMDYVPELFDEQKDQVAIEQILRVIFLDPER 173

Query: 122 PEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVD 181
           P PALEKLKRQLADADAAV ARKKPPED GPRIIGEGLVIDEWKERRERYLARQQ EGVD
Sbjct: 174 PSPALEKLKRQLADADAAVEARKKPPEDAGPRIIGEGLVIDEWKERRERYLARQQGEGVD 233

Query: 182 SV 183
           SV
Sbjct: 234 SV 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567425|ref|XP_002524692.1| structural molecule, putative [Ricinus communis] gi|223536053|gb|EEF37711.1| structural molecule, putative [Ricinus communis]

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 155/180 (86%), Positives = 165/180 (91%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           ++F  E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGES+IATVFKFV
Sbjct: 102 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFV 161

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 123
           E PENNEKP+ QKS+ KFKI+S+KV   +DYVPELF+EQKDQ A EQILRVVFL+PERP 
Sbjct: 162 EHPENNEKPVEQKSKVKFKIMSLKVNGMMDYVPELFEEQKDQIAMEQILRVVFLDPERPS 221

Query: 124 PALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 183
           PALEKLKRQLADADAAV ARKKPPED GPRIIGEGLVIDEWKE RERYLARQQVEGVDSV
Sbjct: 222 PALEKLKRQLADADAAVEARKKPPEDAGPRIIGEGLVIDEWKEGRERYLARQQVEGVDSV 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804004|ref|XP_002869886.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297315722|gb|EFH46145.1| vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/180 (82%), Positives = 165/180 (91%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           ++F  E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFV
Sbjct: 121 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFV 180

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 123
           E PENNEKPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PERP 
Sbjct: 181 EPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERPN 240

Query: 124 PALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 183
           PAL+KLKRQLA+ADAAV ARKKPPE+TGP+IIGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 241 PALDKLKRQLAEADAAVEARKKPPEETGPKIIGEGLVIDEWKERRERYLAQQQGEGADSV 300

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415696|ref|NP_567627.1| vesicle-associated membrane family protein [Arabidopsis thaliana] gi|75161506|sp|Q8VYN2.1|VAP42_ARATH RecName: Full=Vesicle-associated protein 4-2; AltName: Full=Plant VAP homolog 4-2; Short=AtPVA42; AltName: Full=VAMP-associated protein 4-2 gi|17979373|gb|AAL49912.1| putative membrane associated protein [Arabidopsis thaliana] gi|20465773|gb|AAM20375.1| putative membrane associated protein [Arabidopsis thaliana] gi|21592907|gb|AAM64857.1| putative membrane associated protein [Arabidopsis thaliana] gi|332659054|gb|AEE84454.1| vesicle-associated membrane family protein [Arabidopsis thaliana]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 148/180 (82%), Positives = 164/180 (91%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           ++F  E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFV
Sbjct: 116 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFV 175

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 123
           E PENNEKPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PER  
Sbjct: 176 EPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSN 235

Query: 124 PALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 183
           PALEKLKRQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 236 PALEKLKRQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADSV 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186769|ref|NP_001190786.1| vesicle-associated membrane family protein [Arabidopsis thaliana] gi|332659055|gb|AEE84455.1| vesicle-associated membrane family protein [Arabidopsis thaliana]

 Score =  301 bits (772), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 147/176 (83%), Positives = 162/176 (92%)

Query: 8   DEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 67
           +E GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PE
Sbjct: 139 NEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPE 198

Query: 68  NNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALE 127
           NNEKPM Q+SR KFKI+S+KVK  +DYVPELFDEQKD  + EQILRV+FL+PER  PALE
Sbjct: 199 NNEKPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSNPALE 258

Query: 128 KLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 183
           KLKRQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 259 KLKRQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADSV 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076792|ref|XP_002304997.1| predicted protein [Populus trichocarpa] gi|222847961|gb|EEE85508.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (770), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 157/182 (86%), Positives = 166/182 (91%)

Query: 2   SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61
           S ++F  E GKQVRSAI+IKNT KSHVAFKFQTTAPKSCFMRPPGAILAPGES+IATVFK
Sbjct: 52  SKLYFPYEPGKQVRSAIRIKNTCKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFK 111

Query: 62  FVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 121
           F+ELPE NEKPM QKSR KFKI+S+KVK  +DYVPELFDEQKDQ A EQILRV FLNPER
Sbjct: 112 FIELPEINEKPMEQKSRVKFKIMSLKVKGVMDYVPELFDEQKDQVAVEQILRVFFLNPER 171

Query: 122 PEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVD 181
           P PALEKLKRQLADADAA+ ARKKPPED GPRIIGEGLVIDEWKERRERYLARQQVEGVD
Sbjct: 172 PGPALEKLKRQLADADAALEARKKPPEDAGPRIIGEGLVIDEWKERRERYLARQQVEGVD 231

Query: 182 SV 183
           SV
Sbjct: 232 SV 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503260|gb|AFK39696.1| unknown [Lotus japonicus]

 Score =  298 bits (762), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 139/180 (77%), Positives = 164/180 (91%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           ++F  E GKQVRSAI IKNT K+HVAFKFQTTAPKSC+MRPPG IL+PGES+IATVFKFV
Sbjct: 87  LYFPYEPGKQVRSAIAIKNTCKTHVAFKFQTTAPKSCYMRPPGGILSPGESIIATVFKFV 146

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 123
           E PENNEKP+ +KS+ KFKI+S+KV+ + DYVPELFDEQ+DQ A EQ+LRV+FL+PERP 
Sbjct: 147 EPPENNEKPLDRKSKVKFKIMSLKVQGETDYVPELFDEQRDQVAVEQVLRVIFLDPERPS 206

Query: 124 PALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 183
           PA++KLKRQLA+A+AA+ +RKKPPE+TGPR+ GEGLVIDEWKERRERYLARQQVEGVDSV
Sbjct: 207 PAMDKLKRQLAEAEAALESRKKPPEETGPRVAGEGLVIDEWKERRERYLARQQVEGVDSV 266

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495700|ref|XP_002275178.2| PREDICTED: vesicle-associated protein 4-2 [Vitis vinifera] gi|297745648|emb|CBI40859.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (762), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 153/180 (85%), Positives = 165/180 (91%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           ++F  E GKQVRSAI+IKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV
Sbjct: 85  LYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 144

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 123
           E PENNEKPM QKS+ KFKI+S+KVK  +DYVPE+FDE KDQ A EQILRVVFL+ ERP 
Sbjct: 145 EHPENNEKPMEQKSKVKFKIMSLKVKGPMDYVPEMFDELKDQVAVEQILRVVFLDVERPS 204

Query: 124 PALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 183
           PAL+KLKRQLA+A+AAV ARKKPPED GPRIIGEGLVIDEWKERRERYLARQQVEGVDSV
Sbjct: 205 PALDKLKRQLAEAEAAVEARKKPPEDAGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357144664|ref|XP_003573371.1| PREDICTED: vesicle-associated protein 4-2-like [Brachypodium distachyon]

 Score =  288 bits (737), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 147/182 (80%), Positives = 164/182 (90%)

Query: 2   SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61
           S ++F  E GKQVRSA++IKN SKSHVAFKFQTTAPKSCFMRPPG ILAPGES+IATVFK
Sbjct: 54  SKLYFPYEPGKQVRSAVRIKNVSKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFK 113

Query: 62  FVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 121
           FVE PENNEKP+ QK +DKFKI+S+KVK  V+YVPELFDEQKDQ A EQILRVVFL+ ER
Sbjct: 114 FVEHPENNEKPLDQKCKDKFKIVSLKVKGPVEYVPELFDEQKDQVAVEQILRVVFLDAER 173

Query: 122 PEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVD 181
           P   L++LKRQLA+A+AA+ ARKKPPEDTGPRI+GEGLVIDEWKERRERYLARQQVEGVD
Sbjct: 174 PSAQLDRLKRQLAEAEAALEARKKPPEDTGPRIVGEGLVIDEWKERRERYLARQQVEGVD 233

Query: 182 SV 183
           SV
Sbjct: 234 SV 235

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801604|emb|CAN74544.1| hypothetical protein VITISV_011094 [Vitis vinifera]

 Score =  288 bits (736), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/194 (78%), Positives = 165/194 (85%), Gaps = 14/194 (7%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           ++F  E GKQVRSAI+IKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV
Sbjct: 85  LYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 144

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 123
           E PENNEKPM QKS+ KFKI+S+KVK  +DYVPE+FDE KDQ A EQILRVVFL+ ERP 
Sbjct: 145 EHPENNEKPMEQKSKVKFKIMSLKVKGPMDYVPEMFDELKDQVAVEQILRVVFLDVERPS 204

Query: 124 P--------------ALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRE 169
           P              AL+KLKRQLA+A+AAV ARKKPPED GPRIIGEGLVIDEWKERRE
Sbjct: 205 PRMPIYEIXPLYPVKALDKLKRQLAEAEAAVEARKKPPEDAGPRIIGEGLVIDEWKERRE 264

Query: 170 RYLARQQVEGVDSV 183
           RYLARQQVEGVDSV
Sbjct: 265 RYLARQQVEGVDSV 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
UNIPROTKB|Q6YZ10	233	P0473D02.15 "cDNA clone:001-01	0.989	0.776	0.767	1.8e-71
TAIR|locus:2166582	266	MAMI "membrane-associated mann	0.994	0.684	0.726	1e-68
TAIR|locus:2138401	287	AT4G05060 [Arabidopsis thalian	0.972	0.620	0.694	2.7e-61
TAIR|locus:2171594	220	AT5G47180 [Arabidopsis thalian	0.644	0.536	0.32	4.1e-10
CGD|CAL0002790	411	orf19.1212 [Candida albicans (	0.639	0.284	0.308	4.1e-08
TAIR|locus:2101766	256	VAP27-1 "VAMP/SYNAPTOBREVIN-AS	0.617	0.441	0.283	5e-08
UNIPROTKB|Q5F419	151	VAPA "Uncharacterized protein"	0.601	0.728	0.286	1.1e-07
TAIR|locus:2025585	386	VAP27-2 "vamp/synaptobrevin-as	0.622	0.295	0.311	1.6e-07
TAIR|locus:2126921	239	AT4G00170 [Arabidopsis thalian	0.628	0.481	0.288	2e-07
SGD|S000000922	244	SCS2 "Integral ER membrane pro	0.639	0.479	0.320	2.2e-07

UNIPROTKB|Q6YZ10 P0473D02.15 "cDNA clone:001-014-D04, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 139/181 (76%), Positives = 154/181 (85%)

Query:     2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61
             S +FF  E GKQVRSA+KIKN SKSHVAFKFQTTAPKSCFMRPPG ILAPGES+IATVFK
Sbjct:    52 SKLFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIATVFK 111

Query:    62 FVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 121
             FVE PENNEKP+ QK + KFKI+S+KVK  ++YVPELFDEQK+Q A EQILRVVFL+ ER
Sbjct:   112 FVEHPENNEKPLDQKCKVKFKIVSLKVKGPMEYVPELFDEQKNQVAVEQILRVVFLDAER 171

Query:   122 PEPALEKLKRQLXXXXXXXXXRKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVD 181
               P ++KLKRQL         RKKPPEDTGPRI+GEGLVIDEWKERRERYLARQQ+EGVD
Sbjct:   172 QTPQMDKLKRQLAEAEAALEARKKPPEDTGPRIVGEGLVIDEWKERRERYLARQQIEGVD 231

Query:   182 S 182
             S
Sbjct:   232 S 232

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2166582 MAMI "membrane-associated mannitol-induced" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 133/183 (72%), Positives = 154/183 (84%)

Query:     2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 61
             S ++F  E GKQVRSAIK+KNTSKSH AFKFQTTAPKSC+MRPPG +LAPGES+ ATVFK
Sbjct:    83 SYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFATVFK 142

Query:    62 FVELPENNEK-PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120
             FVE PENNEK P+ QKS+ KFKI+S+KVK  V+YVPELFDEQKDQ A EQ+LRV+F++ +
Sbjct:   143 FVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPELFDEQKDQVAVEQVLRVIFIDAD 202

Query:   121 RPEPALEKLKRQLXXXXXXXXXRKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGV 180
             RP  ALEKLKRQL         RKKPP +TGPR++GEGLVIDEWKERRE+YLARQQVE V
Sbjct:   203 RPSAALEKLKRQLDEAEAAVEARKKPPPETGPRVVGEGLVIDEWKERREKYLARQQVESV 262

Query:   181 DSV 183
             DS+
Sbjct:   263 DSL 265

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006970 "response to osmotic stress" evidence=IEP

TAIR|locus:2138401 AT4G05060 [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 125/180 (69%), Positives = 142/180 (78%)

Query:     4 IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
             ++F  E GKQVRSAIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IATVFKFV
Sbjct:   108 LYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFV 167

Query:    64 ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 123
             E PENNEKPM QKS  KFKI+S+K+K   DY+PELF+EQKD  + EQ++RVVFL+PE P 
Sbjct:   168 EPPENNEKPMEQKSGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPENPN 227

Query:   124 PALEKLKRQLXXXXXXXXXRKKPPED-TGPRIIGEGLVIDEWKERRERYLARQQVEGVDS 182
               +EKLK QL         RKK  E   GP+ IGEGLVIDEWK+RRERYLA+QQ  GVD+
Sbjct:   228 SMMEKLKSQLAEADAADEARKKASEGIVGPKPIGEGLVIDEWKQRRERYLAQQQ-GGVDA 286

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 40/125 (32%), Positives = 64/125 (51%)

Query:     6 FQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEL 65
             F  E  KQ    +K+ N ++++VAFK +TT+PK  F+RP   ++ P +S I  V     L
Sbjct:    19 FLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRV----TL 74

Query:    66 PENNEKPMYQKSRDKFKIISMKVK--ADVDYVPE-LFDEQKDQTAAEQILRVVFLNPERP 122
                 E P   + +DKF + S  V    DVD +P+  F +   +T  E  L+V ++ P   
Sbjct:    75 QAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITPSTT 134

Query:   123 EPALE 127
             + + E
Sbjct:   135 QRSSE 139

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

CGD|CAL0002790 orf19.1212 [Candida albicans (taxid:5476)]

 Score = 133 (51.9 bits), Expect = 4.1e-08, P = 4.1e-08
 Identities = 41/133 (30%), Positives = 70/133 (52%)

Query:     1 MSPI-FFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL-IAT 58
             ++P  FF     KQ+   + + N + + +AFK +TTAPK   +RP  +I+ PG+SL I+ 
Sbjct:    46 LTPFTFFSGSFTKQITEYLTLSNPTNTPLAFKVKTTAPKLYCVRPNASIVQPGDSLQISI 105

Query:    59 VFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAE---QI---- 111
             + +    P  N+   Y K +DKF ++S+     +D  P    E   Q  A+   Q+    
Sbjct:   106 ILQGFSQPLPND---Y-KCKDKFLLVSVPAPNSID--PSKVGESWSQLEAQFKPQVVSKK 159

Query:   112 LRVVFL-NPERPE 123
             LRV ++  P++P+
Sbjct:   160 LRVNYVVGPDKPD 172

GO:0031965 "nuclear membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0042992 "negative regulation of transcription factor import into nucleus" evidence=IEA

GO:0048309 "endoplasmic reticulum inheritance" evidence=IEA

GO:0006348 "chromatin silencing at telomere" evidence=IEA

GO:0032377 "regulation of intracellular lipid transport" evidence=IEA

GO:0033149 "FFAT motif binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 34/120 (28%), Positives = 57/120 (47%)

Query:     6 FQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEL 65
             F  E  KQ+  ++ + N + ++VAFK +TT PK   +RP   ++ P     +T    V +
Sbjct:    32 FPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR----STCEVLVTM 87

Query:    66 PENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFLNPERP 122
                 E P   + +DKF +  +     V   +  PE+F ++      E  LRV ++ P RP
Sbjct:    88 QAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPRP 147

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006886 "intracellular protein transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

UNIPROTKB|Q5F419 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 33/115 (28%), Positives = 57/115 (49%)

Query:    14 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
             V + +K++N S   V FK +TTAP+   +RP   I+ PG S+I +V     L   +  P 
Sbjct:    32 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSSVIVSVM----LQPFDYDPN 87

Query:    74 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEK 128
              +KS+ KF + ++    ++  +  ++ E K     +  LR VF  P   +  + K
Sbjct:    88 -EKSKHKFMVQTIYAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNENDKLVSK 141

GO:0005198 "structural molecule activity" evidence=IEA

TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 38/122 (31%), Positives = 58/122 (47%)

Query:     6 FQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEL 65
             F  +  KQ    +++ NT+  +VAFK +TT+PK   +RP   ++AP  +   TV     +
Sbjct:    15 FAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI----M 70

Query:    66 PENNEKPMYQKSRDKFKIISMKVKA---DVDYVPELFDEQKDQTAAEQILRVVFLNP-ER 121
                 E P     +DKF I S  V A   D D    +F + + +   E  LRV  + P + 
Sbjct:    71 QAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPSDS 130

Query:   122 PE 123
             PE
Sbjct:   131 PE 132

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 36/125 (28%), Positives = 64/125 (51%)

Query:     6 FQDEAGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVE 64
             F  E  KQ   ++++ N T+   VAFK +TT P+   +RP   ++ PG+S   TV     
Sbjct:    16 FPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTV----T 71

Query:    65 LPENNEKPMYQKSRDKFKIISMKVK---ADVDYVPELFDEQKDQTAAEQILRVVFL--NP 119
             +    E P+  + +DKF + ++ V       + + E+F+++  +   +  LRVV++  NP
Sbjct:    72 MQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIPANP 131

Query:   120 ERPEP 124
               P P
Sbjct:   132 PSPVP 136

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

SGD|S000000922 SCS2 "Integral ER membrane protein, regulates phospholipid metabolism" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 41/128 (32%), Positives = 64/128 (50%)

Query:     1 MSP--IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 58
             +SP  + ++    +Q      I N S   +AFK +TTAPK   +RP  A++APGE++   
Sbjct:     6 ISPDVLVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQ 65

Query:    59 VFKFVELPENNEKPMYQKSRDKFKIISMKV------KADVDYVPELFDEQKDQTAAEQIL 112
             V  F+ L E  E     K RDKF +I++        KA  D   +L  E K Q  +++I 
Sbjct:    66 VI-FLGLTE--EPAADFKCRDKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAISKKIK 122

Query:   113 RVVFLNPE 120
                 ++P+
Sbjct:   123 VKYLISPD 130

GO:0005634 "nucleus" evidence=IEA

GO:0042992 "negative regulation of transcription factor import into nucleus" evidence=IMP;IPI

GO:0031965 "nuclear membrane" evidence=IEA;IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0033149 "FFAT motif binding" evidence=IMP;IPI

GO:0005198 "structural molecule activity" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IGI;IMP

GO:0006348 "chromatin silencing at telomere" evidence=IGI;IMP

GO:0048309 "endoplasmic reticulum inheritance" evidence=IGI;IMP

GO:0005934 "cellular bud tip" evidence=IDA

GO:0090158 "endoplasmic reticulum membrane organization" evidence=IGI

GO:0060304 "regulation of phosphatidylinositol dephosphorylation" evidence=IGI

GO:0035091 "phosphatidylinositol binding" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0032377 "regulation of intracellular lipid transport" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VYN2	VAP42_ARATH	No assigned EC number	0.8222	0.9836	0.6101	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
pfam00635	109	pfam00635, Motile_Sperm, MSP (Major sperm protein)	2e-22
COG5066	242	COG5066, SCS2, VAMP-associated protein involved in	9e-06

>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain

 Score = 86.7 bits (215), Expect = 2e-22
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           +FF     KQ  S + + N S   VAFK +TT PK   +RP   IL PGES+  T+ +  
Sbjct: 10  LFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGESVTITITR-- 67

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 105
             P + E    +K  DKF I   +   D     E F      
Sbjct: 68  -QPFDKEPGDPKK--DKFVIQYTEAPDDAKDAKEAFKRAWKN 106

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109

>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

 Score = 44.2 bits (104), Expect = 9e-06
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 4  IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
            F      + +    ++N S   V FK +TTAPK   +RP   ++ P  ++   V   +
Sbjct: 9  TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEV---I 65

Query: 64 ELPENNEKPMYQKSRDKFKIISMKVKAD 91
                E     K RDKF I S +    
Sbjct: 66 LQGLTEEPAPDFKCRDKFLIQSYRFDWR 93

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
KOG0439	218	consensus VAMP-associated protein involved in inos	99.97
COG5066	242	SCS2 VAMP-associated protein involved in inositol	99.95
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	99.88
PF14874	102	PapD-like: Flagellar-associated PapD-like	98.12
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	95.4
PF14646	426	MYCBPAP: MYCBP-associated protein family	94.93
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	92.6
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	91.25
PRK09918	230	putative fimbrial chaperone protein; Provisional	87.5
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	86.38
smart00809	104	Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin	84.73
PRK11385	236	putativi pili assembly chaperone; Provisional	83.92
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	83.51
PF02883	115	Alpha_adaptinC2: Adaptin C-terminal domain; InterP	82.98
PF03173	164	CHB_HEX: Putative carbohydrate binding domain; Int	82.55
PRK15299	227	fimbrial chaperone protein StiB; Provisional	82.17
TIGR03079	399	CH4_NH3mon_ox_B methane monooxygenase/ammonia mono	82.0

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.8e-30  Score=213.02  Aligned_cols=177  Identities=34%  Similarity=0.467  Sum_probs=154.8

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      .+|+|++++.+++++.|+|+|+++.++|||||||+|++|||||+.|+|.||+++.|.|.+   +|. ...|.+++|+|||
T Consensus        15 ~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~---q~~-~~~P~d~~~r~kF   90 (218)
T KOG0439|consen   15 DELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTH---QPF-EKSPPDFKSRHKF   90 (218)
T ss_pred             ceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEe---ccC-ccCchhhcccceE
Confidence            479999999999999999999999999999999999999999999999999999999998   773 3457888899999


Q ss_pred             EEEEEEeCCC-CCChhhhhhccC--CCcceEEEeEEEEeCCCCCCchHHHH---HHhHhHHHHHHHhhCCCCCCC---CC
Q 030093           82 KIISMKVKAD-VDYVPELFDEQK--DQTAAEQILRVVFLNPERPEPALEKL---KRQLADADAAVAARKKPPEDT---GP  152 (183)
Q Consensus        82 lIqs~~v~~~-~d~~~elwk~~~--~~~i~e~KLrV~f~~p~~ps~~~e~~---~~~l~~a~~~~~~~~~~~~~~---~~  152 (183)
                      +||++.++.+ .....++|+..+  +..+.+.+++|.|+.|..+....+..   .+..+..++...+........   .+
T Consensus        91 ~v~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (218)
T KOG0439|consen   91 LIQSLKAPPPTTRDVVDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEATKEASDGEVCVKS  170 (218)
T ss_pred             EEEEEecCCccccchhhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCccccccccccccCcccccchh
Confidence            9999999986 567899999988  78889999999999988776666655   667777777788877777543   57


Q ss_pred             ceeccceeechh------------------hHhHHHHHHHhhhcccCC
Q 030093          153 RIIGEGLVIDEW------------------KERRERYLARQQVEGVDS  182 (183)
Q Consensus       153 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~  182 (183)
                      ...++++++++|                  +++++++++.+|.+...|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (218)
T KOG0439|consen  171 KEFGEKLELKEELKAFKLKANKVDEERLLKKKKEGRLLAELQAELVIS  218 (218)
T ss_pred             hhhhccccchhhhhccccccccccccchhhhhhhHHHHHhhhhhhccC
Confidence            789999999999                  899999999999876543

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=99.95  E-value=2.2e-28  Score=202.98  Aligned_cols=114  Identities=22%  Similarity=0.291  Sum_probs=107.0

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      .++.|+.|+....++.+.|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+|   +++.+++.++.+|+|||
T Consensus         7 p~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVil---q~l~eEpapdfKCrdKF   83 (242)
T COG5066           7 PQTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVIL---QGLTEEPAPDFKCRDKF   83 (242)
T ss_pred             CceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEe---eccccCCCCCcccccee
Confidence            368899999999999999999999999999999999999999999999999999999999   89999998999999999


Q ss_pred             EEEEEEeCCCC--CChhhhhhccCCCcceEEEeEEEEeC
Q 030093           82 KIISMKVKADV--DYVPELFDEQKDQTAAEQILRVVFLN  118 (183)
Q Consensus        82 lIqs~~v~~~~--d~~~elwk~~~~~~i~e~KLrV~f~~  118 (183)
                      |||++..+.+.  .+..++|+...+.-|.++||+|+|..
T Consensus        84 Liqs~~~~~~l~g~d~ad~wt~~sk~~i~~rkIrcvyse  122 (242)
T COG5066          84 LIQSYRFDWRLSGSDFADHWTSSSKKPIWTRKIRCVYSE  122 (242)
T ss_pred             EEEEeccChhhccchHHHHHHhhccccchhhheeEEeec
Confidence            99999998754  45799999999888999999999984

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=99.88  E-value=3.7e-22  Score=147.51  Aligned_cols=97  Identities=31%  Similarity=0.459  Sum_probs=77.5

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      +.|.|..++++..++.|+|+|+|+.+||||||||+|.+|+|+|+.|+|.||+++.|.|++   ++......  ...+|||
T Consensus         8 ~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~---~~~~~~~~--~~~~dkf   82 (109)
T PF00635_consen    8 ELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITF---QPFDFEPS--NKKKDKF   82 (109)
T ss_dssp             SEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTTTT--STSSEEE
T ss_pred             cceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEE---EecccCCC--CCCCCEE
Confidence            478999999999999999999999999999999999999999999999999999999999   67544321  2239999


Q ss_pred             EEEEEEeCCCCC----ChhhhhhccC
Q 030093           82 KIISMKVKADVD----YVPELFDEQK  103 (183)
Q Consensus        82 lIqs~~v~~~~d----~~~elwk~~~  103 (183)
                      +|+++.++++..    .+..+|++.+
T Consensus        83 ~I~~~~~~~~~~~~~~~~~~~~~~~~  108 (109)
T PF00635_consen   83 LIQSIVVPDNATDPKKDFKQIWKNGK  108 (109)
T ss_dssp             EEEEEEE-TT-SSSHHHHHCCHHHSS
T ss_pred             EEEEEEcCCCccchhhhHHHHHhccC
Confidence            999999987763    3567777654

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=98.12  E-value=2.4e-05  Score=57.05  Aligned_cols=59  Identities=25%  Similarity=0.382  Sum_probs=50.1

Q ss_pred             ceEEeC-CCCCeEEEEEEEEcCCCCeEEEEEeeCC--ccceeecCCceeeCCCCeEEEEEEe
Q 030093            3 PIFFQD-EAGKQVRSAIKIKNTSKSHVAFKFQTTA--PKSCFMRPPGAILAPGESLIATVFK   61 (183)
Q Consensus         3 eL~F~~-~~~k~~~~~LtL~N~s~~~VAFKVKTTa--P~~Y~VrP~~GiI~Pg~s~~I~V~l   61 (183)
                      +|.|-. ..+...+..|+|+|.|..+..|+|+...  ...|.|.|..|.|+||++..+.|++
T Consensus        10 ~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~   71 (102)
T PF14874_consen   10 ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTF   71 (102)
T ss_pred             EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEE
Confidence            445543 3578899999999999999999997533  5679999999999999999999998

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=95.40  E-value=0.19  Score=37.72  Aligned_cols=49  Identities=24%  Similarity=0.350  Sum_probs=41.6

Q ss_pred             eEEEEEEEEcCCCCeEEEEEeeCC----c-----cceeecCCceeeCCCCeEEEEEEe
Q 030093           13 QVRSAIKIKNTSKSHVAFKFQTTA----P-----KSCFMRPPGAILAPGESLIATVFK   61 (183)
Q Consensus        13 ~~~~~LtL~N~s~~~VAFKVKTTa----P-----~~Y~VrP~~GiI~Pg~s~~I~V~l   61 (183)
                      +....++|+|.++.++.+.+....    +     ..|.|-|+.-.|+||++..|.|..
T Consensus        15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~   72 (122)
T PF00345_consen   15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR   72 (122)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence            347899999999999999987543    1     268999999999999999999943

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>PF14646 MYCBPAP: MYCBP-associated protein family

Probab=94.93  E-value=0.76  Score=42.11  Aligned_cols=115  Identities=14%  Similarity=0.280  Sum_probs=78.9

Q ss_pred             ceEEeCCCCCeEEEEEE-EEcCCCCeEEEEEeeC------------CccceeecCCceeeCCCCeEEEEEEeeccCCCCC
Q 030093            3 PIFFQDEAGKQVRSAIK-IKNTSKSHVAFKFQTT------------APKSCFMRPPGAILAPGESLIATVFKFVELPENN   69 (183)
Q Consensus         3 eL~F~~~~~k~~~~~Lt-L~N~s~~~VAFKVKTT------------aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~   69 (183)
                      .|.|.-.++......|. |.|.+...|-|.=+--            ....|......|+|-||++..+.|++   +|...
T Consensus       238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F---~s~~~  314 (426)
T PF14646_consen  238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMF---KSRKV  314 (426)
T ss_pred             EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEE---eCCCc
Confidence            47899999988888888 9999999999985422            24568899999999999999999998   56421


Q ss_pred             CCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCCCCchHHHHHHhHhHHHH
Q 030093           70 EKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLADADA  138 (183)
Q Consensus        70 e~p~~~~~kDKFlIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~~ps~~~e~~~~~l~~a~~  138 (183)
                           .-.++...+..-+.         +|-    .....-+|+.+-+++..-....+.+++.|+.-.+
T Consensus       315 -----Gif~E~W~L~t~P~---------l~~----~~~l~v~L~G~~~~~~~~~~~~~~~~~~l~~k~~  365 (426)
T PF14646_consen  315 -----GIFKERWELRTFPP---------LFG----GASLTVRLHGVCTPPDEYLDKRKMLEEELARKEA  365 (426)
T ss_pred             -----eEEEEEEEEEEecc---------ccC----CCceEEEEEEEEcCchHhHHHHHHHHHHHHHHHH
Confidence                 23456666655332         222    1124567777766664444455666665554443

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=92.60  E-value=0.53  Score=29.87  Aligned_cols=43  Identities=26%  Similarity=0.164  Sum_probs=34.4

Q ss_pred             EEEEcCCCCeE-EEEEeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093           18 IKIKNTSKSHV-AFKFQTTAPKSCFMRPPGAILAPGESLIATVFK   61 (183)
Q Consensus        18 LtL~N~s~~~V-AFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l   61 (183)
                      ++|+|.++.++ -.+|+|+ =+=..+..+...|.||++..|.|++
T Consensus         2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~y   45 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVTY   45 (45)
T ss_pred             EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEEC
Confidence            68999998776 6777754 5566777888899999999999873

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=91.25  E-value=0.71  Score=34.51  Aligned_cols=50  Identities=16%  Similarity=0.306  Sum_probs=35.2

Q ss_pred             eEEEEEEEEcCCCCeEEEEEeeCCccceee-cCCce-eeCCCCeEEEEEEee
Q 030093           13 QVRSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGA-ILAPGESLIATVFKF   62 (183)
Q Consensus        13 ~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~V-rP~~G-iI~Pg~s~~I~V~l~   62 (183)
                      +..-.|+|.|.+..+..|.|+...+..+.+ .|... .|+||++..+.|.+.
T Consensus        32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~   83 (118)
T PF11614_consen   32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT   83 (118)
T ss_dssp             EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred             EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence            456789999999999999999887778888 66555 499999999888873

>PRK09918 putative fimbrial chaperone protein; Provisional

Probab=87.50  E-value=14  Score=31.19  Aligned_cols=96  Identities=18%  Similarity=0.177  Sum_probs=61.7

Q ss_pred             CeEEEEEEEEcCCCCeEEEEEeeCCc-----cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEE
Q 030093           12 KQVRSAIKIKNTSKSHVAFKFQTTAP-----KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISM   86 (183)
Q Consensus        12 k~~~~~LtL~N~s~~~VAFKVKTTaP-----~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~   86 (183)
                      +....+++|+|.++.++.........     .-|.|-|+.-.|+||++..|.|.+   ..   ..|.+.  ---|.+...
T Consensus        38 ~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~---~~---~lp~dr--Es~f~l~v~  109 (230)
T PRK09918         38 SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFIL---KS---GSPLNT--EHLLRVSFE  109 (230)
T ss_pred             CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEE---CC---CCCCCe--eEEEEEEEE
Confidence            45678999999998877666543211     249999999999999999999987   21   123332  234777777


Q ss_pred             EeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCC
Q 030093           87 KVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER  121 (183)
Q Consensus        87 ~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~~  121 (183)
                      .+++..+.      +..=+.....++++-|-|..-
T Consensus       110 ~IP~~~~~------~~~l~ia~r~~iklfyRP~~l  138 (230)
T PRK09918        110 GVPPKPGG------KNKVVMPIRQDLPVLIQPAAL  138 (230)
T ss_pred             EcCCCCCC------CCEEEEEEEeEEEEEEeCCCC
Confidence            77753321      111122335677777766543

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.38  E-value=2.1  Score=31.67  Aligned_cols=51  Identities=18%  Similarity=0.284  Sum_probs=32.5

Q ss_pred             CCeEEEEEEEEcCCCCeEEEEEeeC-----C---ccceee--c-----------CCceeeCCCCeEEEEEEe
Q 030093           11 GKQVRSAIKIKNTSKSHVAFKFQTT-----A---PKSCFM--R-----------PPGAILAPGESLIATVFK   61 (183)
Q Consensus        11 ~k~~~~~LtL~N~s~~~VAFKVKTT-----a---P~~Y~V--r-----------P~~GiI~Pg~s~~I~V~l   61 (183)
                      +...+..|+|+|.++..+-|++.-.     .   .+.|..  .           |..=.|+||++..|.|++
T Consensus         7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti   78 (112)
T PF06280_consen    7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTI   78 (112)
T ss_dssp             -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEE
T ss_pred             CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEE
Confidence            4557889999999999999997643     1   122221  1           222358999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain

Probab=84.73  E-value=6.3  Score=28.28  Aligned_cols=51  Identities=29%  Similarity=0.518  Sum_probs=39.6

Q ss_pred             CCeEEEEEEEEcCCCCeE-EEEEeeCCccceeec--CCce-eeCCCCeEEEEEEe
Q 030093           11 GKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPGESLIATVFK   61 (183)
Q Consensus        11 ~k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~Pg~s~~I~V~l   61 (183)
                      +....-.+...|.+..++ -|.++-..|+.+.++  |..| .|+||+.+.-.+.+
T Consensus        17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i   71 (104)
T smart00809       17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKV   71 (104)
T ss_pred             CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEE
Confidence            457888999999998777 488888888887765  5554 89999886666665

Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.

>PRK11385 putativi pili assembly chaperone; Provisional

Probab=83.92  E-value=19  Score=30.67  Aligned_cols=98  Identities=15%  Similarity=0.228  Sum_probs=60.5

Q ss_pred             CeEEEEEEEEcCCCCeEEEEEeeC------------CccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCc
Q 030093           12 KQVRSAIKIKNTSKSHVAFKFQTT------------APKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRD   79 (183)
Q Consensus        12 k~~~~~LtL~N~s~~~VAFKVKTT------------aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kD   79 (183)
                      .....+++|.|.++.++.=-....            ...-|.|-|+.--|+||+...+.|..   ... ...|.|.  -.
T Consensus        40 ~~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~---~~~-~~LP~DR--ES  113 (236)
T PRK11385         40 DRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLR---TES-DILPVDR--ET  113 (236)
T ss_pred             CCceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEE---CCC-CCCCCCc--eE
Confidence            446788999999988744333211            11249999999999999999999997   221 1124432  24


Q ss_pred             eEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCC
Q 030093           80 KFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER  121 (183)
Q Consensus        80 KFlIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~~  121 (183)
                      -|.+....+++..+.      ...=......+|++-|-|..-
T Consensus       114 lf~lnv~~IPp~~~~------~n~L~iair~riKLFyRP~~L  149 (236)
T PRK11385        114 LFELSIASVPSGKVE------NQSVKVAMRSVFKLFWRPEGL  149 (236)
T ss_pred             EEEEEEEecCCCcCC------CceEEEEEEeeEEEEEccccc
Confidence            566766777763221      101123347778887766543

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=83.51  E-value=2.3  Score=29.41  Aligned_cols=53  Identities=23%  Similarity=0.395  Sum_probs=32.5

Q ss_pred             CCCCeEEEEEEEEcCCCCeE-EEEEeeCCcccee--ecCCce-eeCCCCeEEEEEEe
Q 030093            9 EAGKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCF--MRPPGA-ILAPGESLIATVFK   61 (183)
Q Consensus         9 ~~~k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~--VrP~~G-iI~Pg~s~~I~V~l   61 (183)
                      .+|...+-.++++|.++.++ ..++.-..|.-+.  ..|... -|.||++..+.+.+
T Consensus         2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V   58 (78)
T PF10633_consen    2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTV   58 (78)
T ss_dssp             -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEE
Confidence            35778899999999986543 3445445688877  455443 69999999999887

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.98  E-value=4.4  Score=29.77  Aligned_cols=52  Identities=27%  Similarity=0.509  Sum_probs=36.8

Q ss_pred             CCCeEEEEEEEEcCCCCeEE-EEEeeCCccceee--cCC-ceeeCCCCeEEEEEEe
Q 030093           10 AGKQVRSAIKIKNTSKSHVA-FKFQTTAPKSCFM--RPP-GAILAPGESLIATVFK   61 (183)
Q Consensus        10 ~~k~~~~~LtL~N~s~~~VA-FKVKTTaP~~Y~V--rP~-~GiI~Pg~s~~I~V~l   61 (183)
                      .+...+-.++..|.+..++- |.++-..|+.|.+  .|. ...|+|+..+.-.+.+
T Consensus        22 ~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v   77 (115)
T PF02883_consen   22 NPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKV   77 (115)
T ss_dssp             ETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEE
T ss_pred             CCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEE
Confidence            36688899999999988875 8887766776655  466 4599998888777665

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....

>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3

Probab=82.55  E-value=2.6  Score=34.21  Aligned_cols=50  Identities=24%  Similarity=0.377  Sum_probs=33.3

Q ss_pred             CeEEEEEEEEcCCCCeE---------------------EEEEeeCCccceeecCCcee--eCCCCeEEEEEEe
Q 030093           12 KQVRSAIKIKNTSKSHV---------------------AFKFQTTAPKSCFMRPPGAI--LAPGESLIATVFK   61 (183)
Q Consensus        12 k~~~~~LtL~N~s~~~V---------------------AFKVKTTaP~~Y~VrP~~Gi--I~Pg~s~~I~V~l   61 (183)
                      .-....|+|+|+++.++                     .|+|.-=+-+.|++.|.-|+  |+||+++.|.+.-
T Consensus        30 ~c~~~~ltl~n~~~~~~~~~dW~IYf~~ir~i~~~~s~~f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~  102 (164)
T PF03173_consen   30 SCFRAELTLTNPGDAPLPKSDWAIYFSSIRPILQVDSDQFKITHINGDLHKLTPTAGFKGLAPGESLEIPFVG  102 (164)
T ss_dssp             -EEEEEEEEEE-SS-B------EEEEE-SS-EEEESSTTEEEEE-STTEEEEEE-TT---B-TTEEEEEEEEE
T ss_pred             cceEEEEEEEcCCCccCCCCCeEEEEecceeeeccCCCCeEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEc
Confidence            34567788888765332                     36676667788999999997  8999999999885

2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.

>PRK15299 fimbrial chaperone protein StiB; Provisional

Probab=82.17  E-value=26  Score=29.50  Aligned_cols=101  Identities=9%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             eCCCCCeEEEEEEEEcCCCCeEEEEEeeCC--------ccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCC
Q 030093            7 QDEAGKQVRSAIKIKNTSKSHVAFKFQTTA--------PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSR   78 (183)
Q Consensus         7 ~~~~~k~~~~~LtL~N~s~~~VAFKVKTTa--------P~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~k   78 (183)
                      -++.+ ....+|+|+|.++.++.-..-+..        ..-|.|-|+.--|+||+...|.|..   ..  ...|.|.  -
T Consensus        32 i~~~~-~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~---~~--~~lP~Dr--E  103 (227)
T PRK15299         32 IFHGD-AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIR---TG--GNLPEDR--E  103 (227)
T ss_pred             EEeCC-CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEE---CC--CCCCCcc--e
Confidence            33433 457899999998876554432211        1239999999999999999999987   22  1123332  2


Q ss_pred             ceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCC
Q 030093           79 DKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPE  120 (183)
Q Consensus        79 DKFlIqs~~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p~  120 (183)
                      --|.+....+++..+.     ..... ......+|++.|-++.
T Consensus       104 slf~lnv~eIP~~~~~-----~~~n~l~iavr~riKLfyRP~~  141 (227)
T PRK15299        104 SLYWLDIKSIPSSNPD-----NKHNTLMLAVKAEFKLIYRPKA  141 (227)
T ss_pred             EEEEEEeEecCCCCcc-----cccceEEEEEeeeeeEEEcccc
Confidence            3577777777763221     00111 2334677788886654

>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B

Probab=82.00  E-value=4.4  Score=37.19  Aligned_cols=54  Identities=22%  Similarity=0.290  Sum_probs=39.5

Q ss_pred             CCCCeEEEEEEEEcCCCCeEEEEEeeCCccc-------eeecCCc-------e-------eeCCCCeEEEEEEee
Q 030093            9 EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKS-------CFMRPPG-------A-------ILAPGESLIATVFKF   62 (183)
Q Consensus         9 ~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~-------Y~VrP~~-------G-------iI~Pg~s~~I~V~l~   62 (183)
                      -+++..+-++++||.++.+|-.+==+|+.-+       |...|+.       |       -|.|||+.+|.|..+
T Consensus       279 VPGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aq  353 (399)
T TIGR03079       279 VPGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAK  353 (399)
T ss_pred             cCCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEe
Confidence            3688999999999999999987744444333       3333332       2       289999999999983

Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
3ikk_A	127	Crystal Structure Analysis Of Msp Domain Length = 1		6e-05
2rr3_A	130	Solution Structure Of The Complex Between Human Vap		2e-04
2cri_A	147	Solution Structure Of The Msp Domain Of Mouse Vamp-		4e-04
1z9o_A	128	1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp		7e-04

>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 14  VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
           V + +K+ N +  +V FK +TTAP+   +RP   I+  G S+  +V     L   +  P 
Sbjct: 28  VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----LQPFDYDP- 82
Query: 74  YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 116
            +KS+ KF + SM    D   +  ++ E K +   +  LR VF
Sbjct: 83  NEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 125

>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 14  VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
           V + +K++N S   V FK +TTAP+   +RP   I+ PG ++  +V     L   +  P 
Sbjct: 28  VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM----LQPFDYDP- 82
Query: 74  YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120
            +KS+ KF + ++    +   +  ++ E K     +  LR VF  P 
Sbjct: 83  NEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEMPN 129

>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 14  VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
           V + +K++N S   V FK +TTAP+   +RP   I+ PG  +  +V     L   +  P 
Sbjct: 33  VTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM----LQPFDYDP- 87
Query: 74  YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 120
            +KS+ KF + ++    ++  +  ++ E K     +  LR VF  P 
Sbjct: 88  NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPN 134

>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 14  VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 73
           V + +K++N S   V FK +TTAP+   +RP   ++ PG  +  +V     L   +  P 
Sbjct: 29  VTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM----LQPFDYDP- 83
Query: 74  YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 116
            +KS+ KF + ++    ++  +  ++ E K     +  LR VF
Sbjct: 84  NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVF 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
2cri_A	147	Vesicle-associated membrane protein-associated pro	4e-27
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	2e-25
1z9l_A	128	Vesicle-associated membrane protein-associated pro	3e-25
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	1e-17
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	1e-09
1row_A	109	SSP-19, MSP-domain protein like family member; bet	7e-07

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score = 99.0 bits (246), Expect = 4e-27
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           + F+      V + +K++N S   V FK +TTAP+   +RP   I+ PG           
Sbjct: 23  LKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSI-----VTVS 77

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPE 123
            + +  +    +KS+ KF + ++    ++  +  ++ E K     +  LR VF  P   +
Sbjct: 78  VMLQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNEND 137

Query: 124 PALEKLK 130
              +   
Sbjct: 138 KLNDSGP 144

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score = 94.8 bits (235), Expect = 2e-25
 Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 12/125 (9%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           ++F      + ++ I + N +K+ VAFK +TTAP+   ++P  +   PG S        +
Sbjct: 27  LYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGAS--------I 78

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVP----ELFDEQKDQTAAEQILRVVFLNP 119
           ++  +    +   ++D+F I++ +++      P    + + E       E  LR   +  
Sbjct: 79  DIIVSPHGGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVES 138

Query: 120 ERPEP 124
            +P  
Sbjct: 139 SKPNS 143

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score = 93.5 bits (232), Expect = 3e-25
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           + F+      V + +K++N S   V FK +TTAP+   +RP   ++ PG  +  +V    
Sbjct: 19  LKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM--- 75

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 116
              +  +    +KS+ KF + ++    ++  +  ++ E K     +  LR VF
Sbjct: 76  --LQPFDYDPNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVF 126

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 74.1 bits (182), Expect = 1e-17
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 9/115 (7%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           I F      +    IKI N     + +  +TT  +   + PP  +L P E ++  V    
Sbjct: 17  IVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDT 76

Query: 64  ELPENNEKPMYQKSRDKFKIISMKV--KADVDYVPELFDEQKDQTAAEQILRVVF 116
                 +      + D+  I        A   +  E F  Q D     + L + +
Sbjct: 77  FNAATED-----LNNDRITIEWTNTPDGAAKQFRREWF--QGDGMVRRKNLPIEY 124

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 10/95 (10%)

Query: 11  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 70
                S   I + S S +AFK +++  +   +RP    +         + +         
Sbjct: 22  ATGGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR--------- 72

Query: 71  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 105
            P      DK  I   +V A+       F     Q
Sbjct: 73  LPG-PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQ 106

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109

 Score = 44.9 bits (106), Expect = 7e-07
 Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 10/94 (10%)

Query: 12  KQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 71
             V S  K+ N     + FK +++      + P    + P  S    + +          
Sbjct: 15  AGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---------T 65

Query: 72  PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 105
               K  DK  +      AD       F      
Sbjct: 66  AGAPK-EDKLVVHFASAPADATDAQAAFVAVAPA 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
2cri_A	147	Vesicle-associated membrane protein-associated pro	100.0
1z9l_A	128	Vesicle-associated membrane protein-associated pro	100.0
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	100.0
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.97
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.95
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.94
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	98.14
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	97.84
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	97.7
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	97.3
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	94.69
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	94.55
1yew_A	382	Particulate methane monooxygenase, B subunit; memb	83.51
3rfr_A	419	PMOB; membrane, oxidoreductase; 2.68A {Methylocyst	83.4
3q48_A	257	Chaperone CUPB2; IG fold, periplasmic chaperone; 2	82.1
3zy7_A	122	AP-1 complex subunit gamma-1; endocytosis, protein	81.67

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=100.00  E-value=1.4e-34  Score=227.59  Aligned_cols=116  Identities=27%  Similarity=0.453  Sum_probs=106.6

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      ++|.|.+++++.+++.|+|+|+|+.+||||||||+|++|+|||+.|+|.||+++.|.|+|   ++....  ++++|+|||
T Consensus        21 ~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~~--p~~~~kDKF   95 (147)
T 2cri_A           21 SDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDYD--PNEKSKHKF   95 (147)
T ss_dssp             SEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCCC--TTCCSCCCE
T ss_pred             CeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcCC--ccccCCCEE
Confidence            589999999999999999999999999999999999999999999999999999999999   776443  357899999


Q ss_pred             EEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCCC
Q 030093           82 KIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERP  122 (183)
Q Consensus        82 lIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~~p  122 (183)
                      +||++.++++.+++.++|++..+..++++||||+|+.|..+
T Consensus        96 lVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~~  136 (147)
T 2cri_A           96 MVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNEN  136 (147)
T ss_dssp             EEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred             EEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCCC
Confidence            99999999887778999999988899999999999876543

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=100.00  E-value=4.9e-34  Score=219.16  Aligned_cols=111  Identities=26%  Similarity=0.453  Sum_probs=103.3

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      ++|.|.+++++++++.|+|+|+|+.+||||||||+|++|+|||+.|+|+||+++.|.|++   ++....  ++.+|+|||
T Consensus        17 ~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~~--p~~~~~dkF   91 (128)
T 1z9l_A           17 SDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDYD--PNEKSKHKF   91 (128)
T ss_dssp             SEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCCC--TTCCCCCEE
T ss_pred             CeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcCC--cccccCCEE
Confidence            589999999999999999999999999999999999999999999999999999999999   776443  346899999


Q ss_pred             EEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEe
Q 030093           82 KIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL  117 (183)
Q Consensus        82 lIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~  117 (183)
                      +||++.++++.+++.++|++..+..++++||||+|.
T Consensus        92 ~V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~  127 (128)
T 1z9l_A           92 MVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE  127 (128)
T ss_dssp             EEEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred             EEEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence            999999999887789999999888999999999995

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=100.00  E-value=2.5e-33  Score=222.09  Aligned_cols=117  Identities=21%  Similarity=0.338  Sum_probs=104.6

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      ++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|.||++++|.|+|   ++...     ..++|||
T Consensus        25 ~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~~-----~~~kDKF   96 (152)
T 1wic_A           25 EELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGLT-----VSAQDRF   96 (152)
T ss_dssp             SCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSSC-----CCSSCCE
T ss_pred             CeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCccc-----CCCCCEE
Confidence            489999999999999999999999999999999999999999999999999999999999   67532     3789999


Q ss_pred             EEEEEEeC--CCC--CChhhhhhccCCCcceEEEeEEEEeCC-CCCCchH
Q 030093           82 KIISMKVK--ADV--DYVPELFDEQKDQTAAEQILRVVFLNP-ERPEPAL  126 (183)
Q Consensus        82 lIqs~~v~--~~~--d~~~elwk~~~~~~i~e~KLrV~f~~p-~~ps~~~  126 (183)
                      +||++.++  ++.  +++.++|++..+..++++||+|+|+++ +|+|+++
T Consensus        97 lVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~  146 (152)
T 1wic_A           97 LIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLML  146 (152)
T ss_dssp             EEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCC
T ss_pred             EEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCccc
Confidence            99999998  443  357899999988899999999999975 5566565

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.97  E-value=1.1e-29  Score=195.26  Aligned_cols=110  Identities=16%  Similarity=0.197  Sum_probs=95.3

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      ++|.|.+++++++++.|+|+|+|+.+||||||||+|++|+|||++|+|.||+++.|.|+|   +++...+ . ...+|||
T Consensus        15 ~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~~~~~~-~-~~~kDKf   89 (126)
T 1msp_A           15 QKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DTFNAAT-E-DLNNDRI   89 (126)
T ss_dssp             SCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CCCCGGG-S-CCSSCEE
T ss_pred             CeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cCCCCCC-C-ccCCCEE
Confidence            589999999999999999999999999999999999999999999999999999999999   7865543 2 2459999


Q ss_pred             EEEEEEeCCCCC-ChhhhhhccCCCcceEEEeEEEEe
Q 030093           82 KIISMKVKADVD-YVPELFDEQKDQTAAEQILRVVFL  117 (183)
Q Consensus        82 lIqs~~v~~~~d-~~~elwk~~~~~~i~e~KLrV~f~  117 (183)
                      +||++.++++.+ .+...|....+ .+..++|+|.|.
T Consensus        90 ~Vq~~~~p~~~~~~~~~~wf~~d~-~~~~k~L~V~Yn  125 (126)
T 1msp_A           90 TIEWTNTPDGAAKQFRREWFQGDG-MVRRKNLPIEYN  125 (126)
T ss_dssp             EEEEEECCTTCCSSCCTHHHHSSS-CCEEEEEEEEEE
T ss_pred             EEEEEECCCCcchhhhHHhhcCCC-ceEEEEEEEEec
Confidence            999999998863 34555555444 578999999996

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.95  E-value=1.8e-27  Score=179.45  Aligned_cols=99  Identities=14%  Similarity=0.154  Sum_probs=87.0

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      .+|.|+++.   .++.|+|+|+|+.+||||||||+|++|||||+.|+|+||++++|.|++   |++       ..++|||
T Consensus         8 ~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~-------~~~~dKf   74 (109)
T 1row_A            8 PACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------APKEDKL   74 (109)
T ss_dssp             SSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------CCEEEEE
T ss_pred             CEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC-------CCCCCEE
Confidence            469999884   369999999999999999999999999999999999999999999999   663       2469999


Q ss_pred             EEEEEEeCCCCCChhhhhhccCCCcceEEEeEEE
Q 030093           82 KIISMKVKADVDYVPELFDEQKDQTAAEQILRVV  115 (183)
Q Consensus        82 lIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~  115 (183)
                      +||++.++++..+..++|++....  ++.+|++.
T Consensus        75 lvq~~~~~~~~~d~~~~fk~~~~~--g~~~i~l~  106 (109)
T 1row_A           75 VVHFASAPADATDAQAAFVAVAPA--GTVTIPMS  106 (109)
T ss_dssp             EEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred             EEEEEECCCCCCCHHHHhhcCCCC--ceEEEEEE
Confidence            999999998877789999997653  66777765

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.94  E-value=1e-26  Score=177.27  Aligned_cols=99  Identities=20%  Similarity=0.251  Sum_probs=87.2

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      .+|.|+++-   .++.|+|+|+|+.+||||||||+|+.|||||+.|+|+||++++|.|++   +++    +   .++|||
T Consensus        16 ~~l~F~~~g---g~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~----~---~k~DKf   82 (116)
T 1m1s_A           16 PTGNYPATG---GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG----P---PKEDKI   82 (116)
T ss_dssp             SEEEECTTC---EEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC----C---SCEEEE
T ss_pred             CeEEEecCC---CEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC----C---CCCCEE
Confidence            468888763   489999999999999999999999999999999999999999999999   664    1   469999


Q ss_pred             EEEEEEeCCCCCChhhhhhccCCCcceEEEeEEE
Q 030093           82 KIISMKVKADVDYVPELFDEQKDQTAAEQILRVV  115 (183)
Q Consensus        82 lIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~  115 (183)
                      +||++.++++..++.++|++...  ..+.+|++.
T Consensus        83 lVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~  114 (116)
T 1m1s_A           83 VIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI  114 (116)
T ss_dssp             EEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred             EEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence            99999999877778999999765  478888775

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.14  E-value=1.5e-05  Score=59.36  Aligned_cols=65  Identities=15%  Similarity=0.234  Sum_probs=53.0

Q ss_pred             CCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEE
Q 030093           11 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIIS   85 (183)
Q Consensus        11 ~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs   85 (183)
                      +...+..|.|+|.++.++.|++++.  .-|.|.|+.|.|.||+++.|.|+.   .|...     ......+.|..
T Consensus        40 ~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F---~P~~~-----g~~~~~l~v~~  104 (122)
T 2ys4_A           40 KYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEF---EPQSV-----GDHSGRLIVCY  104 (122)
T ss_dssp             SSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEE---CCSSS-----BCCCCBCEEEE
T ss_pred             CCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEE---EcCCC-----ccEEEEEEEEE
Confidence            5788899999999999999999975  469999999999999999999998   66422     23445555543

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=97.84  E-value=6.5e-05  Score=57.82  Aligned_cols=60  Identities=15%  Similarity=0.212  Sum_probs=49.9

Q ss_pred             ceEEe-CCCCCeEEEEEEEEcCCCCeEEEEEeeC------CccceeecCCceeeCCCCeEEEEEEee
Q 030093            3 PIFFQ-DEAGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKF   62 (183)
Q Consensus         3 eL~F~-~~~~k~~~~~LtL~N~s~~~VAFKVKTT------aP~~Y~VrP~~GiI~Pg~s~~I~V~l~   62 (183)
                      +|.|- ..+++..+..|+|+|++.-+.-|++...      .+.-+.|.|+.|.|.||+++.|.|+++
T Consensus        33 ~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~   99 (140)
T 3qbt_B           33 EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY   99 (140)
T ss_dssp             EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred             eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence            45555 3467888999999999999999999742      234578999999999999999999985

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.70  E-value=7.4e-05  Score=54.01  Aligned_cols=52  Identities=12%  Similarity=0.163  Sum_probs=45.3

Q ss_pred             CCCeEEEEEEEEcCCCCeEEEEEeeCC-c--cceeecCCceeeCCCCeEEEEEEe
Q 030093           10 AGKQVRSAIKIKNTSKSHVAFKFQTTA-P--KSCFMRPPGAILAPGESLIATVFK   61 (183)
Q Consensus        10 ~~k~~~~~LtL~N~s~~~VAFKVKTTa-P--~~Y~VrP~~GiI~Pg~s~~I~V~l   61 (183)
                      .+...+..++|+|+++.++.|++.... +  .-|.+.|+.|.|.||++..|.|++
T Consensus        24 ~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f   78 (112)
T 2e6j_A           24 TGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF   78 (112)
T ss_dssp             SSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred             ECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence            467788999999999999999996421 1  459999999999999999999999

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=97.30  E-value=0.00073  Score=59.32  Aligned_cols=62  Identities=16%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             CceEEe-CCCCCeEEEEEEEEcCCCCeEEEEEeeCCcc-c-----eeecCCceeeCCCCeEEEEEEeec
Q 030093            2 SPIFFQ-DEAGKQVRSAIKIKNTSKSHVAFKFQTTAPK-S-----CFMRPPGAILAPGESLIATVFKFV   63 (183)
Q Consensus         2 ~eL~F~-~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~-~-----Y~VrP~~GiI~Pg~s~~I~V~l~~   63 (183)
                      ++|.|- ..++...+.+|+|+|++.-++.|.+.....+ .     +.|.|+.|.|.||+++.|.|++++
T Consensus        35 ~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v  103 (366)
T 3qis_A           35 REFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV  103 (366)
T ss_dssp             SEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred             CeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence            345663 4578899999999999999999999754222 2     569999999999999999999954

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=94.69  E-value=0.1  Score=42.12  Aligned_cols=58  Identities=12%  Similarity=0.087  Sum_probs=48.0

Q ss_pred             ceEEeCC-CCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093            3 PIFFQDE-AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK   61 (183)
Q Consensus         3 eL~F~~~-~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l   61 (183)
                      .|.|.-- .+......++++|+++.++-++.-.. |..+..++..+.|+||++..|.|++
T Consensus         9 ~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~   67 (220)
T 2qsv_A            9 RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL   67 (220)
T ss_dssp             EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred             eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence            4445432 45677789999999999999997544 8888889999999999999999999

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=94.55  E-value=0.14  Score=41.30  Aligned_cols=50  Identities=20%  Similarity=0.331  Sum_probs=44.7

Q ss_pred             CCeEEEEEEEEcCCCCeEEE-EEeeCCccceeecCCceeeCCCCeEEEEEEe
Q 030093           11 GKQVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATVFK   61 (183)
Q Consensus        11 ~k~~~~~LtL~N~s~~~VAF-KVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l   61 (183)
                      +...+..++|+|.++.++.+ +|+|+. +-..+.++.+.|+||++..|.|++
T Consensus       133 g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~  183 (220)
T 2qsv_A          133 GETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAV  183 (220)
T ss_dssp             TSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEE
T ss_pred             CCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEE
Confidence            78889999999999999987 888764 677788889999999999999998

>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A

Probab=83.51  E-value=4.1  Score=36.07  Aligned_cols=54  Identities=26%  Similarity=0.288  Sum_probs=41.3

Q ss_pred             CCCCeEEEEEEEEcCCCCeEEEEEeeCCccceee---------cC------------CceeeCCCCeEEEEEEee
Q 030093            9 EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFM---------RP------------PGAILAPGESLIATVFKF   62 (183)
Q Consensus         9 ~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~V---------rP------------~~GiI~Pg~s~~I~V~l~   62 (183)
                      .+++..+-+++++|.++++|-..==+|+.-+|.-         -|            +..-|+||++.++.|..+
T Consensus       261 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGETr~~~v~a~  335 (382)
T 1yew_A          261 VPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVDVTAS  335 (382)
T ss_dssp             SSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEEEEEEE
T ss_pred             cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCceeEEEEEee
Confidence            4789999999999999999988755666655522         12            122389999999999984

>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A

Probab=83.40  E-value=3.5  Score=36.87  Aligned_cols=52  Identities=25%  Similarity=0.294  Sum_probs=40.7

Q ss_pred             CCCCeEEEEEEEEcCCCCeEEEEEeeCCcccee--------------------e-cCCceeeCCCCeEEEEEEee
Q 030093            9 EAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCF--------------------M-RPPGAILAPGESLIATVFKF   62 (183)
Q Consensus         9 ~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~--------------------V-rP~~GiI~Pg~s~~I~V~l~   62 (183)
                      .+++..+-+++++|.++++|-+.==+|+.-+|.                    + .|+  -|+||++.+++|..+
T Consensus       295 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGETrt~~V~a~  367 (419)
T 3rfr_A          295 VPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGESKEIVVKIQ  367 (419)
T ss_dssp             SSSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCEEEEEEEEE
T ss_pred             cCCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcceEEEEEee
Confidence            468899999999999999998874455555543                    1 233  599999999999984

>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}

Probab=82.10  E-value=20  Score=29.60  Aligned_cols=96  Identities=14%  Similarity=0.158  Sum_probs=60.8

Q ss_pred             EEEEEEEEcCCCCeEEEEEeeCC------c----cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEE
Q 030093           14 VRSAIKIKNTSKSHVAFKFQTTA------P----KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKI   83 (183)
Q Consensus        14 ~~~~LtL~N~s~~~VAFKVKTTa------P----~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlI   83 (183)
                      ...+|+|+|.++.++.--+-...      |    .-|.|-|+.-.|+||+...|.|..   ...  ..|.|..  --|.+
T Consensus        44 k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~---~~~--~LP~DrE--Slf~l  116 (257)
T 3q48_A           44 REVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAY---LKA--PLPTDRE--SLFWL  116 (257)
T ss_dssp             SEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEE---CCC--CCCSSSC--EEEEE
T ss_pred             cEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEE---CCC--CCCCCce--eEEEE
Confidence            35899999999887765543211      1    139999999999999999999987   221  1244433  35777


Q ss_pred             EEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCC
Q 030093           84 ISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER  121 (183)
Q Consensus        84 qs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p~~  121 (183)
                      ....+++..+.     ....=+.....+|++-|-+..-
T Consensus       117 nv~eIPp~~~~-----~~n~Lqiair~rIKLFyRP~~L  149 (257)
T 3q48_A          117 NILEVPPRDED-----ENNALQFSFRSRFKLFFRPSQL  149 (257)
T ss_dssp             EEEEECCC--------------CCEEEEEEEEEECTTC
T ss_pred             EeeecCCCCCC-----CCceEEEEEEEEEEEEEecccC
Confidence            77777664322     1111133457889998887543

>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A

Probab=81.67  E-value=13  Score=27.22  Aligned_cols=68  Identities=18%  Similarity=0.285  Sum_probs=45.4

Q ss_pred             CeEEEEEEEEcCCCCeE-EEEEeeCCccceeec--CCce-eeCC--CCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEE
Q 030093           12 KQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAP--GESLIATVFKFVELPENNEKPMYQKSRDKFKIIS   85 (183)
Q Consensus        12 k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~P--g~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs   85 (183)
                      ....-.++.+|.+..+| -|.++.-.|+.|.++  |.+| .|.|  +..++=.+.+  ..+.      ....+=|+.|.+
T Consensus        29 ~~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i--~n~~------~~~lklR~klsY  100 (122)
T 3zy7_A           29 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKV--LNPQ------KQQLRMRIKLTF  100 (122)
T ss_dssp             CEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEE--ECTT------CCCCCEEEEEEE
T ss_pred             CeEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEE--ECCC------CCCEEEEEEEEE
Confidence            34677888899987666 899999999998766  7777 6888  6555444443  2342      123455666665


Q ss_pred             EE
Q 030093           86 MK   87 (183)
Q Consensus        86 ~~   87 (183)
                      ..
T Consensus       101 ~~  102 (122)
T 3zy7_A          101 NW  102 (122)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	2e-22
d1rowa_	107	b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele	4e-16
d1m1sa_	109	b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan	4e-16
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	1e-14

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.2 bits (213), Expect = 2e-22
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 13/129 (10%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFV 63
           ++F      + ++ I + N +K+ VAFK +TTAP+   ++P  +   PG S+   V    
Sbjct: 27  LYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHG 86

Query: 64  ELPENNEKPMYQKSRDKFKIISMKVKADVDYVP----ELFDEQKDQTAAEQILRVVFLNP 119
            L           ++D+F I++ +++      P    + + E       E  LR   +  
Sbjct: 87  GLT--------VSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVES 138

Query: 120 ERP-EPALE 127
            +P    L 
Sbjct: 139 SKPNSLMLS 147

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.3 bits (167), Expect = 4e-16
 Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 13/101 (12%)

Query: 11  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 70
              V S  K+ N     + FK +++      + P    + P  S    + +         
Sbjct: 12  AAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR--------- 62

Query: 71  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQI 111
                K  DK  +      AD       F        A  +
Sbjct: 63  TAGAPK-EDKLVVHFASAPADATDAQAAF---VAVAPAGTV 99

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.3 bits (167), Expect = 4e-16
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 10/95 (10%)

Query: 11  GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 70
                S   I + S S +AFK +++  +   +RP    +         + +         
Sbjct: 15  ATGGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG------ 68

Query: 71  KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQ 105
                   DK  I   +V A+       F     Q
Sbjct: 69  ----PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQ 99

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.9 bits (158), Expect = 1e-14
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 13/118 (11%)

Query: 4   IFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVF--K 61
           I F      +    IK+ N+S   + +  +TT  K   + PP  +L P E+++  V    
Sbjct: 15  IVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDA 74

Query: 62  FVELPENNEKPMYQKSRDKFKIISMKV--KADVDYVPELFDEQKDQTAAEQILRVVFL 117
           F    E+        + D+  +        A   +  E F  Q D     + L + + 
Sbjct: 75  FAFGQED-------TNNDRITVEWTNTPDGAAKQFRREWF--QGDGMVRRKNLPIEYN 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.97
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.96
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	99.91
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	99.91
d2co7b1	128	Periplasmic chaperone SafB {Salmonella typhimurium	93.02
d1p5va1	141	Chaperone protein Caf1m {Yersinia pestis [TaxId: 6	91.65
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	91.36
d2j2za1	124	Pilus chaperone PapD, N-domain {Escherichia coli [	89.72
d1gyva_	120	Gamma1-adaptin domain {Human (Homo sapiens) [TaxId	84.85
d3bwuc1	121	Periplasmic chaperone FimC {Escherichia coli [TaxI	83.8

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-30  Score=205.20  Aligned_cols=117  Identities=21%  Similarity=0.341  Sum_probs=103.2

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      ++|.|.++++++++|.|+|+|+|+.+||||||||+|++|+|||+.|+|.||+++.|.|++   ++.     ....++|||
T Consensus        25 ~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~---~~~-----~~~~~kdKF   96 (152)
T d1wica_          25 EELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGG-----LTVSAQDRF   96 (152)
T ss_dssp             SCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSS-----SCCCSSCCE
T ss_pred             CCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEE---CCC-----CcccCCCcE
Confidence            479999999999999999999999999999999999999999999999999999999998   443     346789999


Q ss_pred             EEEEEEeCCCCC----ChhhhhhccCCCcceEEEeEEEEeCCC-CCCchH
Q 030093           82 KIISMKVKADVD----YVPELFDEQKDQTAAEQILRVVFLNPE-RPEPAL  126 (183)
Q Consensus        82 lIqs~~v~~~~d----~~~elwk~~~~~~i~e~KLrV~f~~p~-~ps~~~  126 (183)
                      +|+++.+++..+    ++.++|++..+..++++||+|+|+++. ++++++
T Consensus        97 li~~~~v~~~~~~~~~d~~~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~~  146 (152)
T d1wica_          97 LIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLML  146 (152)
T ss_dssp             EEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCC
T ss_pred             EEEEEEeCCCCCCCccCHHHHhhcCCcCcEEEEEEEEEEeCCCCCCCccc
Confidence            999999976653    468999998888999999999999865 444443

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=2.1e-29  Score=191.83  Aligned_cols=111  Identities=15%  Similarity=0.174  Sum_probs=98.1

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      ++|.|.+++++.+++.|+|+|+|+.+||||||||+|++|+|+|+.|+|+||+++.|.|+|   ++....  ...+++|||
T Consensus        13 ~~L~F~~p~~~~~~~~l~l~N~s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~---~~~~~~--~~~~~~dkF   87 (124)
T d1grwa_          13 TKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSC---DAFAFG--QEDTNNDRI   87 (124)
T ss_dssp             SCEEEESCCSSCEEEEEEEEECSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CCCCGG--GSCCTTCEE
T ss_pred             CeEEEecCCCcEEEEEEEEECCCCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEE---ecCCCC--CcccCCceE
Confidence            689999999999999999999999999999999999999999999999999999999999   776443  456889999


Q ss_pred             EEEEEEeCCCC-CChhhhhhccCCCcceEEEeEEEEeC
Q 030093           82 KIISMKVKADV-DYVPELFDEQKDQTAAEQILRVVFLN  118 (183)
Q Consensus        82 lIqs~~v~~~~-d~~~elwk~~~~~~i~e~KLrV~f~~  118 (183)
                      +||++.++++. +.....|+...+ .+.+++|+|.|.+
T Consensus        88 ~v~~~~~p~~~~~~~~~~w~~~~~-~~~~~~l~V~Y~p  124 (124)
T d1grwa_          88 TVEWTNTPDGAAKQFRREWFQGDG-MVRRKNLPIEYNP  124 (124)
T ss_dssp             EEEEEECCSSCCSSCCGGGGTSSS-CCEEEEEEEEEEC
T ss_pred             EEEEEECCCccHHHHHHHHhccCC-ceEEEEEEEEeCC
Confidence            99999998664 445677777544 6789999999975

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=2.9e-24  Score=159.88  Aligned_cols=98  Identities=21%  Similarity=0.257  Sum_probs=84.4

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      .+|.|+++.+   ++.++|+|.|+.+||||||||+|++|+|+|++|+|+||+++.|.|++   +++.       ..+|||
T Consensus         9 ~~l~F~~~~g---~~~~~l~N~s~~~vafKiktt~~~~y~V~P~~G~I~P~~~~~i~I~~---~~~~-------~~~DKf   75 (109)
T d1m1sa_           9 PTGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPGP-------PKEDKI   75 (109)
T ss_dssp             SEEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSCC-------SCEEEE
T ss_pred             CEEEeecCCC---cEEEEEECCCCCcEEEEEEcCCCCeEEEeCCeeEECCCCeEEEEEEe---CCCC-------CCCCEE
Confidence            4789987754   57899999999999999999999999999999999999999999999   5542       348999


Q ss_pred             EEEEEEeCCCCCChhhhhhccCCCcceEEEeEE
Q 030093           82 KIISMKVKADVDYVPELFDEQKDQTAAEQILRV  114 (183)
Q Consensus        82 lIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV  114 (183)
                      +|+++.++++.++..++|+.....  .+..++.
T Consensus        76 ~I~~~~~~~~~~d~~~~fk~~~~~--~~~~ikl  106 (109)
T d1m1sa_          76 VIQYAEVPAEETDPMAPFKAGAQQ--GEIIVKL  106 (109)
T ss_dssp             EEEEEEECTTCCCTTHHHHTTCCC--EEEEEEE
T ss_pred             EEEEEECCCCCcCHHHHHhcCCCC--CcEEEEE
Confidence            999999999988889999997765  3444443

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=1.2e-23  Score=156.28  Aligned_cols=99  Identities=14%  Similarity=0.154  Sum_probs=84.1

Q ss_pred             CceEEeCCCCCeEEEEEEEEcCCCCeEEEEEeeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceE
Q 030093            2 SPIFFQDEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKF   81 (183)
Q Consensus         2 ~eL~F~~~~~k~~~~~LtL~N~s~~~VAFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKF   81 (183)
                      .+|.|+...   .++.|+|+|.|+.+||||||||+|.+|+|+|+.|+|+||+++.|.|++   +|+.       ..+|||
T Consensus         6 ~~~~f~~~~---g~~~~~l~N~s~~~vafKvKtt~~~~y~V~P~~G~i~P~~~~~I~I~~---~~~~-------~~~DKf   72 (107)
T d1rowa_           6 PACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAGA-------PKEDKL   72 (107)
T ss_dssp             SSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSCC-------CEEEEE
T ss_pred             CcceeeCCC---CeEEEEEEcCCCCeEEEEEEcCCCCeEEEECCEEEECCCCEEEEEEEe---CCCC-------CCCCEE
Confidence            368887553   678999999999999999999999999999999999999999999999   5641       348999


Q ss_pred             EEEEEEeCCCCCChhhhhhccCCCcceEEEeEEE
Q 030093           82 KIISMKVKADVDYVPELFDEQKDQTAAEQILRVV  115 (183)
Q Consensus        82 lIqs~~v~~~~d~~~elwk~~~~~~i~e~KLrV~  115 (183)
                      +||++.++++.++..++|+.....  ++..|++.
T Consensus        73 ~I~~~~~~~~~~d~~~~fk~~~~~--~~~~ikl~  104 (107)
T d1rowa_          73 VVHFASAPADATDAQAAFVAVAPA--GTVTIPMS  104 (107)
T ss_dssp             EEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred             EEEEEECCCCCcCHHHHhhcCCCC--CcEEEEEE
Confidence            999999999988899999986544  44445543

>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone SafB
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.02  E-value=0.44  Score=33.73  Aligned_cols=72  Identities=10%  Similarity=0.158  Sum_probs=50.2

Q ss_pred             eEEEEEEEEcCCCCeEEEEEeeC-----CccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEEE
Q 030093           13 QVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMK   87 (183)
Q Consensus        13 ~~~~~LtL~N~s~~~VAFKVKTT-----aP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~~   87 (183)
                      .....|+|+|.++.++...+...     ....|.|-|+.-.|+||++..|.|..   ..  ...|.+.  --.|.+....
T Consensus        20 ~~~~sv~l~N~~~~p~lvQ~~v~~~~~~~~~~fivtPPl~rl~p~~~q~vRI~~---~~--~~lp~dr--Es~f~l~i~~   92 (128)
T d2co7b1          20 TAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR---TG--GDMPTDR--ETLQWVCIKA   92 (128)
T ss_dssp             SSCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE---CC--CCCCSSS--CEEEEEEEEE
T ss_pred             CCEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEeCceeEECCCCceEEEEEe---cC--CCCCCCc--EEEEEEEEEE
Confidence            35678999999998877666432     23359999999999999999999987   22  1223332  2246666666


Q ss_pred             eCCC
Q 030093           88 VKAD   91 (183)
Q Consensus        88 v~~~   91 (183)
                      +++.
T Consensus        93 IP~~   96 (128)
T d2co7b1          93 VPPE   96 (128)
T ss_dssp             ECCC
T ss_pred             cCCC
Confidence            6653

>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Chaperone protein Caf1m
species: Yersinia pestis [TaxId: 632]

Probab=91.65  E-value=0.58  Score=33.73  Aligned_cols=72  Identities=11%  Similarity=0.034  Sum_probs=49.3

Q ss_pred             EEEEEEEEcCCCCeEEEEEeeCCc-------cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEE
Q 030093           14 VRSAIKIKNTSKSHVAFKFQTTAP-------KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISM   86 (183)
Q Consensus        14 ~~~~LtL~N~s~~~VAFKVKTTaP-------~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~   86 (183)
                      ....|+|+|.++.++...+.....       .-|.|-|+.-.|+||++..|.|..   ...  ..|.+..  -.|.+...
T Consensus        22 ~~~s~~v~N~~~~p~lvQ~wv~~~~~~~~~~~pfivtPPl~rl~p~~~~~lRI~~---~~~--~lP~DrE--slf~l~i~   94 (141)
T d1p5va1          22 AGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQ---AGG--VFPRDKE--SLKWLCVK   94 (141)
T ss_dssp             SCEEEEEEECSSSCEEEEEEECC---------CEEEESSEEEECTTCEEEEEEEE---CSC--CCCSSSC--EEEEEEEE
T ss_pred             cEEEEEEEeCCCCCEEEEEEEEcCCCCcCCCCCeEEcCCeEEECCCCceEEEEEe---cCC--CCCCcce--EEEEEEEE
Confidence            466899999999999888765332       129999999999999999999986   221  1233332  34666666


Q ss_pred             EeCCCC
Q 030093           87 KVKADV   92 (183)
Q Consensus        87 ~v~~~~   92 (183)
                      .+|+..
T Consensus        95 ~IP~~~  100 (141)
T d1p5va1          95 GIPPKD  100 (141)
T ss_dssp             EEC---
T ss_pred             EcCCCC
Confidence            666543

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=91.36  E-value=0.13  Score=35.54  Aligned_cols=56  Identities=23%  Similarity=0.188  Sum_probs=46.8

Q ss_pred             eCCCCCeEEEEEEEEcCCCCeE-EEEEeeCCccceeecCCceeeCCCCeEEEEEEee
Q 030093            7 QDEAGKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMRPPGAILAPGESLIATVFKF   62 (183)
Q Consensus         7 ~~~~~k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~   62 (183)
                      ...++....-.++++|..+..+ ..++-.+.|.-+.+.|..--|+||++..+++.+.
T Consensus        12 ~v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~~Vt   68 (103)
T d1w8oa1          12 ALEPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQVTIT   68 (103)
T ss_dssp             EECTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEEEEE
T ss_pred             eeCCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEEEEE
Confidence            3467899999999999987554 3456667899999999888899999999999983

>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Pilus chaperone PapD, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.72  E-value=1.1  Score=31.37  Aligned_cols=95  Identities=14%  Similarity=0.194  Sum_probs=56.8

Q ss_pred             eEEEEEEEEcCCCC-eEEEEEeeC--C-----ccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEE
Q 030093           13 QVRSAIKIKNTSKS-HVAFKFQTT--A-----PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKII   84 (183)
Q Consensus        13 ~~~~~LtL~N~s~~-~VAFKVKTT--a-----P~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIq   84 (183)
                      .....++|+|.+++ ++.-.....  .     ..-|.|-|+.-.|+||++..+.|.+   .......|.+..  --|.+.
T Consensus        15 ~~~~~i~v~N~~~~~p~LvQswv~~~~~~~~~~~~fivtPPl~rl~p~~~~~vRI~~---~~~~~~lP~drE--s~~~l~   89 (124)
T d2j2za1          15 EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST---TPDISKLPQDRE--SLFYFN   89 (124)
T ss_dssp             SSEEEEEEEECCSSSCEEEEEEEECTTSCEESSSSEEEECSEEEECTTCEEEEEEEE---CGGGGGSCSSSC--EEEEEE
T ss_pred             CCEEEEEEEeCCCCccEEEEEEEecCCCCccccCCeEECCCeEEECCCCcceEEEEE---cCCCCCCCCcee--EEEEEE
Confidence            34688999998764 544333221  1     1238999999999999999999997   221112233332  346665


Q ss_pred             EEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCC
Q 030093           85 SMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNP  119 (183)
Q Consensus        85 s~~v~~~~d~~~elwk~~~~-~~i~e~KLrV~f~~p  119 (183)
                      ...+++..+.       ..+ .....++|++-|-+.
T Consensus        90 i~~IP~~~~~-------~~~l~i~~r~~iklFyRP~  118 (124)
T d2j2za1          90 LREIPPRSEK-------ANVLQIALQTKIKLFYRPA  118 (124)
T ss_dssp             EEEECCCCCC-------SSEEEEEEEEEEEEEEECG
T ss_pred             EEecCCCCCC-------CCEEEEEEeeEEEEEECCc
Confidence            5666654321       111 233467777777663

>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Clathrin adaptor appendage domain
family: gamma-adaptin C-terminal appendage domain-like
domain: Gamma1-adaptin domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.85  E-value=3.9  Score=28.34  Aligned_cols=68  Identities=18%  Similarity=0.324  Sum_probs=44.3

Q ss_pred             CeEEEEEEEEcCCCCeE-EEEEeeCCccceeec--CCce-eeCC--CCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEE
Q 030093           12 KQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAP--GESLIATVFKFVELPENNEKPMYQKSRDKFKIIS   85 (183)
Q Consensus        12 k~~~~~LtL~N~s~~~V-AFKVKTTaP~~Y~Vr--P~~G-iI~P--g~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs   85 (183)
                      +...-.++.+|.+..+| .|.++--.|+.|.++  |.+| .|.|  +..++=.+.+  ..+..      ...+=|+.|.+
T Consensus        27 ~~~~i~~~~~N~s~~~i~~f~fqaAVPK~~kL~l~ppS~~~l~~~~~~~itQ~~~i--~n~~~------~~l~lr~klsY   98 (120)
T d1gyva_          27 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQELSPSSSVVPAFNTGTITQVIKV--LNPQK------QQLRMRIKLTY   98 (120)
T ss_dssp             TEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGSCCEEEEEEE--ECTTC------CCCCEEEEEEE
T ss_pred             ceEEEEEEEEeCCcCceeeEEEEEECCCCcEEEEeCCCCCcccCCCCCCeEEEEEE--ECCCC------CCEEEEEEEEE
Confidence            45667788999998776 899998899999887  5555 7877  3333322222  23432      23456777766


Q ss_pred             EE
Q 030093           86 MK   87 (183)
Q Consensus        86 ~~   87 (183)
                      ..
T Consensus        99 ~~  100 (120)
T d1gyva_          99 NH  100 (120)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone FimC
species: Escherichia coli [TaxId: 562]

Probab=83.80  E-value=3.1  Score=28.74  Aligned_cols=98  Identities=11%  Similarity=0.103  Sum_probs=56.0

Q ss_pred             eEEEEEEEEcCCC-CeEEEEE-----eeCCccceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEE
Q 030093           13 QVRSAIKIKNTSK-SHVAFKF-----QTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISM   86 (183)
Q Consensus        13 ~~~~~LtL~N~s~-~~VAFKV-----KTTaP~~Y~VrP~~GiI~Pg~s~~I~V~l~~~~p~~~e~p~~~~~kDKFlIqs~   86 (183)
                      +..+.++|+|.++ .++.--.     ..+....|.|-|+.--|+||+...|.|..   ...+ ..|.+..  --|.+...
T Consensus        15 ~~~~~~~i~N~~~~~~~lvq~wv~~~d~~~~~~fivtPPl~rl~p~~~q~vRI~~---~~~~-~lp~drE--slf~l~i~   88 (121)
T d3bwuc1          15 QKQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILD---ATNN-QLPQDRE--SLFWMNVK   88 (121)
T ss_dssp             CSEEEEEEEECCTTCEEEEEEEEEETTSCCCSSEEEESSEEEEESSEEEEEEEEE---CSTT-CSCSSSC--EEEEEEEE
T ss_pred             CceEEEEEEECCCCccEEEEEEEEcCCCCcCCCeeECCCcEEeCCCCeeEEEEEe---cCCC-CCCCCeE--EEEEEEEE
Confidence            3668999999875 4543222     12334459999999999999999999987   2221 2233322  34555555


Q ss_pred             EeCCCCCChhhhhhccCCCcceEEEeEEEEeCC
Q 030093           87 KVKADVDYVPELFDEQKDQTAAEQILRVVFLNP  119 (183)
Q Consensus        87 ~v~~~~d~~~elwk~~~~~~i~e~KLrV~f~~p  119 (183)
                      .+++......   .+..=+.....+|++-|-|.
T Consensus        89 ~IP~~~~~~~---~~n~l~ia~r~~iKlfyRP~  118 (121)
T d3bwuc1          89 AIPSMDKSKL---TENTLQLAIISRIKLYYRPA  118 (121)
T ss_dssp             EEECCC--------CCEEEEEEEEEEEEEEECT
T ss_pred             EcCCCCCCcC---cCCEEEEEEEeEEEEEECCc
Confidence            5554322100   00001223356777777654