Citrus Sinensis ID: 030104

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTEP
Secondary Structure (PSIPRED)
ccccccccHHHHccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccEEEEcccHHHHHHccccccEEccccccccccccccHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccccEEcccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHccccccccEEEEHHHcccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHcccEEEEcccHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccccEccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MEATSLISLssfaagasslppvlcphgnnrrgllSLTVdqqrcdnigfisskilsfcpkaslrgnleavgvptsvPVRVAHELLQAGhryldvrtpeefsaghatgainvpymyrvgsgmtknLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAawrqnglptep
Flexible Loop (DISEMBL)
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEvstrfrkhdeiivgcqsgkRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTEP
Low Complexity Region (SEG)
MEATslislssfaagasslPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTEP
Disordered region (IsUnstruct)
********************PVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWR********
Disordered Region (DISOPRED)
********LSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLR**********SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPT**
Disordered Region (DISEMBL)
********LSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTEP
Disordered Region (DISPRO)
****************SSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q38853	182	Rhodanese-like domain-con	yes	no	0.939	0.945	0.534	3e-46
P27626	183	Senescence-associated pro	N/A	no	0.606	0.606	0.687	7e-42
Q39129	120	Thiosulfate sulfurtransfe	no	no	0.612	0.933	0.681	3e-39
Q9FKW8	136	Thiosulfate sulfurtransfe	no	no	0.584	0.786	0.454	3e-22
Q8RUD6	169	Rhodanese-like domain-con	no	no	0.579	0.627	0.401	1e-18
F4IPI4	156	Rhodanese-like domain-con	no	no	0.759	0.891	0.326	7e-15
Q94A65	224	Rhodanese-like domain-con	no	no	0.590	0.482	0.324	3e-09
Q7MQ91	106	Thiosulfate sulfurtransfe	yes	no	0.513	0.886	0.303	1e-05
Q8DD53	106	Thiosulfate sulfurtransfe	yes	no	0.513	0.886	0.303	1e-05
Q59WH7	438	Adenylyltransferase and s	N/A	no	0.459	0.191	0.333	1e-05

>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1

 Score =  184 bits (467), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 125/191 (65%), Gaps = 19/191 (9%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHGN------NRRGLLSLTVDQQRCDNIGFISSKIL 54
           ME T+  + S     +S++ P L   G+       RRG++   V   R  N  +  +   
Sbjct: 1   METTAFNTTSRIGNWSSAISPPLQTCGSFKCQLPTRRGVI---VADLRNSNFRWRKATTT 57

Query: 55  SFCPKASLRGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
           S       RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPY
Sbjct: 58  S-------RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPY 110

Query: 113 MYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGF 171
           MYRVGSGM KN  F+ +VS+ FRKHDEII+GC+SG+ S MA+TDLL  GF  ITDIAGG+
Sbjct: 111 MYRVGSGMVKNPSFLRQVSSHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGY 170

Query: 172 AAWRQNGLPTE 182
            AW +N LP E
Sbjct: 171 VAWTENELPVE 181

Arabidopsis thaliana (taxid: 3702)

>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1

 Score =  169 bits (429), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 77/112 (68%), Positives = 94/112 (83%), Gaps = 1/112 (0%)

Query: 72  PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           PTSVPVRVA EL QAG+++LDVRTP+EFS GH + AINVPYMYRVGSGM KN  F+ +VS
Sbjct: 71  PTSVPVRVARELAQAGYKHLDVRTPDEFSIGHPSRAINVPYMYRVGSGMVKNPSFLRQVS 130

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPTE 182
           + FRKHDEII+GC+SG+RS+MA+T+LL  GF G+TDIAGG+  W +N LP E
Sbjct: 131 SHFRKHDEIIIGCESGERSLMASTELLTAGFTGVTDIAGGYVPWTENELPVE 182

Is thought to act during the early stages of leaf senescence.

Raphanus sativus (taxid: 3726)

>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2

 Score =  161 bits (407), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 91/113 (80%), Gaps = 1/113 (0%)

Query: 71  VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct: 7   VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66

Query: 131 STRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPTE 182
           S+ F + D IIVGCQSG RS+ A TDLL+ GF G+ DI GG++AW +NGLPT+
Sbjct: 67  SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 119

Thought to act during the early stages of leaf senescence. Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9FKW8|STR18_ARATH Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18 PE=1 SV=1

 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 3/110 (2%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVS 131
           SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     G  KN +F+E+VS
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVS 75

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLP 180
           +     D+I+VGCQSG RS+ A T+L+  G+  + ++ GG+ AW  +  P
Sbjct: 76  SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNVGGGYLAWVDHSFP 125

Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8RUD6|STR19_ARATH Rhodanese-like domain-containing protein 19, mitochondrial OS=Arabidopsis thaliana GN=STR19 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 1/107 (0%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           +V V  A   L  GHRYLDVRT EEF+  H   A+N+PYM++   G   N  F+ +V++ 
Sbjct: 43  TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASV 102

Query: 134 FRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGL 179
            +K + +IV C +G R   A  DLLN G+  + ++ GG++AW   G 
Sbjct: 103 CKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAGF 149

Arabidopsis thaliana (taxid: 3702)

>sp|F4IPI4|STR17_ARATH Rhodanese-like domain-containing protein 17 OS=Arabidopsis thaliana GN=STR17 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 5/144 (3%)

Query: 44  DNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRV--AHELLQAGHRYLDVRTPEEFSA 101
           D++  + S +L F     L     ++  P  + + V  A +LL +G+ +LDVRT EEF  
Sbjct: 2   DSLHVLRSFLLLFIVFNHLPRTTTSMSEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKK 61

Query: 102 GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL- 158
           GH  +    NVPY      G   N  F++ VS+   + D +I+GC+SG RS+ A   L+ 
Sbjct: 62  GHVDSENVFNVPYWLYTPQGQEINPNFLKHVSSLCNQTDHLILGCKSGVRSLHATKFLVS 121

Query: 159 NGFAGITDIAGGFAAWRQNGLPTE 182
           +GF  + ++ GG+ AW     P +
Sbjct: 122 SGFKTVRNMDGGYIAWVNKRFPVK 145

Arabidopsis thaliana (taxid: 3702)

>sp|Q94A65|STR14_ARATH Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 64/145 (44%), Gaps = 37/145 (25%)

Query: 74  SVPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYR----------------- 115
           SV V+ A  L +  +   LDVR   E+ AGH  GAINV  MYR                 
Sbjct: 76  SVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVE-MYRLIREWTAWDIARRLGFA 134

Query: 116 ---VGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG--------------KRSMMAATDL- 157
              + SG  +N +F++ V  +  K  +IIV C S                RS++AA  L 
Sbjct: 135 FFGIFSGTEENPEFIQSVEAKLDKEAKIIVACSSAGTMKPTQNLPEGQQSRSLIAAYLLV 194

Query: 158 LNGFAGITDIAGGFAAWRQNGLPTE 182
           LNG+  +  + GG   W + GLP E
Sbjct: 195 LNGYKNVFHLEGGIYTWGKEGLPVE 219

Arabidopsis thaliana (taxid: 3702)

>sp|Q7MQ91|GLPE_VIBVY Thiosulfate sulfurtransferase GlpE OS=Vibrio vulnificus (strain YJ016) GN=glpE PE=3 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 18/112 (16%)

Query: 75  VPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN--LKFVEEVS 131
           + V+ AH L+  G  R +D+R P+ F+  HA  A +          +T +  + F+++V 
Sbjct: 7   IDVQGAHALISRGEARLVDIRDPQSFAVAHAQSAFH----------LTNDSIVNFMQQVE 56

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPTE 182
                   ++V C  G  S  AA  L+N GF  +  + GGF AW +  LP E
Sbjct: 57  FE----QPVLVMCYHGISSQGAAQYLVNQGFEEVYSVDGGFEAWHRASLPVE 104

Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8DD53|GLPE_VIBVU Thiosulfate sulfurtransferase GlpE OS=Vibrio vulnificus (strain CMCP6) GN=glpE PE=3 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 18/112 (16%)

Query: 75  VPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN--LKFVEEVS 131
           + V+ AH L+  G  R +D+R P+ F+  HA  A +          +T +  + F+++V 
Sbjct: 7   IDVQGAHALISRGEARLVDIRDPQSFAVAHAQSAFH----------LTNDSIVNFMQQVE 56

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPTE 182
                   ++V C  G  S  AA  L+N GF  +  + GGF AW +  LP E
Sbjct: 57  FE----QPVLVMCYHGISSQGAAQYLVNQGFEEVYSVDGGFEAWHRASLPVE 104

Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.

Vibrio vulnificus (taxid: 672)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q59WH7|UBA4_CANAL Adenylyltransferase and sulfurtransferase UBA4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=UBA4 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 88  HRYLDVRTPEEFSAGHATGAINVPY--MYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ 145
           H  +DVR  E+F   H   AINV +   +R    +    +++ + ST   K DEI V C+
Sbjct: 344 HILIDVRPREQFQITHLPNAINVQWDPTFRKADAIE---QYLPDDST---KDDEIYVVCR 397

Query: 146 SGKRSMMAATDLLN-GFAGITDIAGGFAAWRQN 177
            G  S +AA  L+  G+  + DI GG   W  +
Sbjct: 398 FGNDSQLAAKKLIGMGYPNVRDIIGGLDKWSDD 430

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Acts by mediating the C-terminal thiocarboxylation of sulfur carrier URM1. Its N-terminus first activates URM1 as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 to form thiocarboxylation (-COSH) of its C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
224133954	180	predicted protein [Populus trichocarpa]	0.967	0.983	0.695	3e-63
255579783	182	Senescence-associated protein DIN1, puta	0.978	0.983	0.690	1e-61
351728052	186	uncharacterized protein LOC100305968 [Gl	0.732	0.720	0.740	6e-52
357483967	185	Senescence-associated protein DIN1 [Medi	0.732	0.724	0.742	2e-51
388501622	179	unknown [Lotus japonicus]	0.732	0.748	0.727	4e-51
351726216	185	uncharacterized protein LOC100499831 [Gl	0.732	0.724	0.740	4e-51
359497218	177	PREDICTED: senescence-associated protein	0.814	0.841	0.670	5e-51
449434108	184	PREDICTED: rhodanese-like domain-contain	0.879	0.875	0.626	6e-47
7340289	150	OP1 [Cucumis sativus]	0.803	0.98	0.655	4e-46
147782977	176	hypothetical protein VITISV_010789 [Viti	0.786	0.818	0.632	2e-45

>gi|224133954|ref|XP_002327720.1| predicted protein [Populus trichocarpa] gi|222836805|gb|EEE75198.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/184 (69%), Positives = 147/184 (79%), Gaps = 7/184 (3%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHG-NNRRGLLSLTVDQQRCDNIGFISSKILSFCPK 59
           M A +++   S +  +++L PVLCP   N RRG+ +  V+ +RC +I  I+ K LSF PK
Sbjct: 1   MAAKAVVCYGS-STSSTTLRPVLCPQQLNKRRGVFA--VNSRRC-SIN-INHKSLSFRPK 55

Query: 60  ASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG 119
            SLR NLEA G+PTSVPVRVAHEL QAGHRYLDVRTP+EFS GHA GAIN+PYMYRVGSG
Sbjct: 56  TSLRWNLEATGIPTSVPVRVAHELHQAGHRYLDVRTPDEFSTGHAAGAINIPYMYRVGSG 115

Query: 120 MTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNG 178
           MTKN KFVEEVS+ FRKHDEIIVGCQ GKRSMMAATDLL  GF  +TDIAGGFAAW QNG
Sbjct: 116 MTKNPKFVEEVSSHFRKHDEIIVGCQLGKRSMMAATDLLAAGFTAVTDIAGGFAAWTQNG 175

Query: 179 LPTE 182
           LPT+
Sbjct: 176 LPTD 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579783|ref|XP_002530729.1| Senescence-associated protein DIN1, putative [Ricinus communis] gi|223529693|gb|EEF31635.1| Senescence-associated protein DIN1, putative [Ricinus communis]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 149/184 (80%), Gaps = 5/184 (2%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLT-VDQQRCDNIGFISSKILSFCPK 59
           MEA S++S ++F +  +SL P  CP   N R LL L  ++  R  +IG I+ K +SFCPK
Sbjct: 1   MEAKSIVSSATFTS--TSLCPSFCPSNLNNRKLLLLPLINNPRRLSIG-INQKSVSFCPK 57

Query: 60  ASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG 119
           A LRGNLEAVGVPTSVPVRVAHELL AGHRYLDVRTPEEFSAGH  GAIN+PYMYRVGSG
Sbjct: 58  AGLRGNLEAVGVPTSVPVRVAHELLLAGHRYLDVRTPEEFSAGHVVGAINIPYMYRVGSG 117

Query: 120 MTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNG 178
           M KN KF+E+VS+ F K++EII+GCQSGKRSMMAATDLL+ G+  +TDIAGG+AAW QNG
Sbjct: 118 MKKNTKFLEQVSSHFGKYNEIIIGCQSGKRSMMAATDLLSAGYTAVTDIAGGYAAWTQNG 177

Query: 179 LPTE 182
           LPTE
Sbjct: 178 LPTE 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728052|ref|NP_001235646.1| uncharacterized protein LOC100305968 [Glycine max] gi|255627141|gb|ACU13915.1| unknown [Glycine max]

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 100/135 (74%), Positives = 116/135 (85%), Gaps = 1/135 (0%)

Query: 49  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 108
           +  K  +F  +ASL+GNLEA+ VPTSVPVRVA+ELL AGHRYLDVRTPEEF AGHA GAI
Sbjct: 51  VPPKFPNFRREASLQGNLEAIRVPTSVPVRVAYELLLAGHRYLDVRTPEEFDAGHAPGAI 110

Query: 109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDI 167
           N+PYM+RVGSGMTKN  F+ EVS++FRK DEIIVGC+ GKRSMMAA+DLL  GF G+TD+
Sbjct: 111 NIPYMFRVGSGMTKNSNFIREVSSQFRKDDEIIVGCELGKRSMMAASDLLAAGFTGLTDM 170

Query: 168 AGGFAAWRQNGLPTE 182
           AGG+AAW QNGLPTE
Sbjct: 171 AGGYAAWTQNGLPTE 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483967|ref|XP_003612270.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|217071246|gb|ACJ83983.1| unknown [Medicago truncatula] gi|355513605|gb|AES95228.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|388495624|gb|AFK35878.1| unknown [Medicago truncatula]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 113/136 (83%), Gaps = 2/136 (1%)

Query: 49  ISSKILSFCPKASLRGNLE-AVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA 107
           +  K  +F     L+GNLE  VGVPTSVPVRVAHELL AGH+YLDVRT EEF+AGHA GA
Sbjct: 49  VQPKFSNFRTMCGLKGNLEEVVGVPTSVPVRVAHELLLAGHKYLDVRTTEEFNAGHAPGA 108

Query: 108 INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITD 166
           IN+PYMY+VGSGMTKN  FV+EVS+ FRK DE+IVGCQ GKRSMMAATDLL  GF G+TD
Sbjct: 109 INIPYMYKVGSGMTKNSNFVKEVSSHFRKEDEVIVGCQLGKRSMMAATDLLAAGFTGLTD 168

Query: 167 IAGGFAAWRQNGLPTE 182
           IAGG+AAW QNGLPTE
Sbjct: 169 IAGGYAAWTQNGLPTE 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501622|gb|AFK38877.1| unknown [Lotus japonicus]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 114/136 (83%), Gaps = 2/136 (1%)

Query: 49  ISSKILSFCPKASLRGNLEAVGV-PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA 107
           +  K  +F  + ++  NLEAVGV PTSVPVRVAHELL AGH+YLDVRTPEEF AGHA GA
Sbjct: 43  VQPKFQTFRVEGAMNQNLEAVGVVPTSVPVRVAHELLLAGHKYLDVRTPEEFDAGHAPGA 102

Query: 108 INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITD 166
           IN+PYM++VGSGMTKN  FV+E S++FRK DEIIVGCQ GKRSMMAATDLL +GF G+TD
Sbjct: 103 INIPYMFKVGSGMTKNSNFVKEASSQFRKEDEIIVGCQLGKRSMMAATDLLASGFTGVTD 162

Query: 167 IAGGFAAWRQNGLPTE 182
           IAGG+AAW Q GLPTE
Sbjct: 163 IAGGYAAWTQTGLPTE 178

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726216|ref|NP_001236607.1| uncharacterized protein LOC100499831 [Glycine max] gi|255626991|gb|ACU13840.1| unknown [Glycine max]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/135 (74%), Positives = 115/135 (85%), Gaps = 1/135 (0%)

Query: 49  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 108
           +  K  SF  +A+L+GNLEAV VPTSVPVRVA+ELL AGHRYLDV TPEEF+AGHA GAI
Sbjct: 50  VPPKFPSFRREAALQGNLEAVRVPTSVPVRVAYELLLAGHRYLDVGTPEEFNAGHAPGAI 109

Query: 109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDI 167
           N+PYM+RVGSGMTKN  F+ EVS+ FRK DEIIVGC+ GKRSMMAA+DLL  GF G+TD+
Sbjct: 110 NIPYMFRVGSGMTKNSNFIREVSSNFRKEDEIIVGCELGKRSMMAASDLLAAGFTGLTDM 169

Query: 168 AGGFAAWRQNGLPTE 182
           AGG+AAW QNGLPTE
Sbjct: 170 AGGYAAWTQNGLPTE 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497218|ref|XP_002271073.2| PREDICTED: senescence-associated protein DIN1-like [Vitis vinifera] gi|296088206|emb|CBI35721.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 104/155 (67%), Positives = 115/155 (74%), Gaps = 6/155 (3%)

Query: 29  NRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGH 88
           N R L  L  + QRC     +      FC   + RGNLE+ GVPTSVPVRVA ELLQAGH
Sbjct: 27  NFRCLSPLKANPQRC-----VVGGTKRFCRVVAARGNLESTGVPTSVPVRVALELLQAGH 81

Query: 89  RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148
           RYLDVRTPEEFSAGHA+GAINVPYM R GSGM KN KF+ EVS+ FRK DEIIVGCQ GK
Sbjct: 82  RYLDVRTPEEFSAGHASGAINVPYMLRFGSGMAKNPKFLVEVSSHFRKDDEIIVGCQKGK 141

Query: 149 RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
           RS+MA  DLL  GF  +TDIAGG+ AW QNGLPT+
Sbjct: 142 RSLMAVNDLLAAGFTAVTDIAGGYDAWSQNGLPTD 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434108|ref|XP_004134838.1| PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like [Cucumis sativus] gi|449491287|ref|XP_004158850.1| PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like [Cucumis sativus]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 104/166 (62%), Positives = 118/166 (71%), Gaps = 5/166 (3%)

Query: 22  VLCPHGNN--RRGLL--SLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPV 77
           +L P+ NN   RG L   +T   QR      IS K  S    A LR  LEA  VPTSVPV
Sbjct: 18  LLLPNTNNLTSRGRLLPMITGSLQRRRRDSAISYKHWSTSRNAVLREELEATAVPTSVPV 77

Query: 78  RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
           RVA ELLQAG RYLDVRTPEE+S GHA GAIN+PYMYRVGSGMT+N  F+ EV+  FRK 
Sbjct: 78  RVALELLQAGQRYLDVRTPEEYSVGHAPGAINIPYMYRVGSGMTRNPHFLAEVAIYFRKD 137

Query: 138 DEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
           DEIIVGC SGKRS+MAA DLL +G+  +TDIAGG+ AW +NGLP E
Sbjct: 138 DEIIVGCLSGKRSLMAAADLLASGYNYVTDIAGGYEAWSRNGLPME 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7340289|gb|AAF61174.1|AF245222_1 OP1 [Cucumis sativus]

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/148 (65%), Positives = 109/148 (73%), Gaps = 1/148 (0%)

Query: 36  LTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRT 95
           +T   QR      IS K  S    A LR  LEA  VPTSVPVRVA ELLQAG RYLDVRT
Sbjct: 2   ITGSLQRRRRDSAISYKHWSTSRNAVLREELEATAVPTSVPVRVALELLQAGQRYLDVRT 61

Query: 96  PEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAAT 155
           PEE+S GHA GAIN+PYMYRVGSGMT+N  F+ EV+  FRK DEIIVGC SGKRS+MAA 
Sbjct: 62  PEEYSVGHAPGAINIPYMYRVGSGMTRNPHFLAEVAIYFRKDDEIIVGCLSGKRSLMAAA 121

Query: 156 DLL-NGFAGITDIAGGFAAWRQNGLPTE 182
           DLL +G+  +TDIAGG+ AW +NGLP E
Sbjct: 122 DLLASGYNYVTDIAGGYEAWSRNGLPME 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782977|emb|CAN72959.1| hypothetical protein VITISV_010789 [Vitis vinifera]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 109/155 (70%), Gaps = 11/155 (7%)

Query: 29  NRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGH 88
           N R L  L  + QRC     +       C   + RGNLE+ GVPTSVPVRVA ELLQAGH
Sbjct: 31  NFRCLSPLKANPQRC-----VVGGTKRLCXVVAARGNLESTGVPTSVPVRVALELLQAGH 85

Query: 89  RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148
           R     TPEEFSAGHA+GAINVPYM R GSGM KN KF+ EVS+ FRK DEIIVGCQ GK
Sbjct: 86  R-----TPEEFSAGHASGAINVPYMLRFGSGMAKNPKFLVEVSSHFRKDDEIIVGCQKGK 140

Query: 149 RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
           RS+MA  DLL  GF  +TDIAGG+ AW QNGLPT+
Sbjct: 141 RSLMAVNDLLAAGFTAVTDIAGGYDAWSQNGLPTD 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
UNIPROTKB|B2C7Y6	185	NRIP1 "Chloroplast N receptor-	0.770	0.762	0.643	2.5e-42
TAIR|locus:2128038	182	SEN1 "AT4G35770" [Arabidopsis	0.655	0.659	0.707	2.5e-42
TAIR|locus:2156937	120	STR16 "AT5G66040" [Arabidopsis	0.612	0.933	0.681	8e-37
TAIR|locus:2156882	138	STR18 "AT5G66170" [Arabidopsis	0.650	0.862	0.424	7e-22
TAIR|locus:505006261	169	AT2G21045 [Arabidopsis thalian	0.573	0.621	0.405	1.4e-18
TAIR|locus:2827795	156	AT2G17850 "AT2G17850" [Arabido	0.759	0.891	0.326	3.3e-15
UNIPROTKB|Q607E4	120	MCA1816 "Sulfurtransferase" [M	0.437	0.666	0.468	3.1e-12
UNIPROTKB|Q3Z6P8	144	DET1392 "Sulfurtransferase" [D	0.442	0.562	0.419	2e-10
TIGR_CMR|DET_1392	144	DET_1392 "rhodanese-like domai	0.442	0.562	0.419	2e-10
TIGR_CMR|CPS_3148	133	CPS_3148 "putative phage shock	0.431	0.593	0.347	1.6e-08

UNIPROTKB|B2C7Y6 NRIP1 "Chloroplast N receptor-interacting protein 1" [Nicotiana benthamiana (taxid:4100)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 92/143 (64%), Positives = 108/143 (75%)

Query:    41 QRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFS 100
             Q+  N G  S++   F   A++   ++   VPTSVPVRVA ELLQAGHRYLDVRT EEFS
Sbjct:    43 QKRRNFGN-SNRTPGFSWMATVGEKVQVSTVPTSVPVRVALELLQAGHRYLDVRTAEEFS 101

Query:   101 AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN- 159
              GHA GAIN+PYM+R+GSGM KN  F E+V   F K DEIIVGCQ GKRS MAATDLL  
Sbjct:   102 DGHAPGAINIPYMFRIGSGMIKNPNFAEQVLEHFGKDDEIIVGCQLGKRSFMAATDLLAA 161

Query:   160 GFAGITDIAGGFAAWRQNGLPTE 182
             GF+G+TDIAGG+AAW +NGLPT+
Sbjct:   162 GFSGVTDIAGGYAAWTENGLPTD 184

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2128038 SEN1 "AT4G35770" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 87/123 (70%), Positives = 100/123 (81%)

Query:    63 RGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM 120
             RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPYMYRVGSGM
Sbjct:    59 RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPYMYRVGSGM 118

Query:   121 TKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGL 179
              KN  F+ +VS+ FRKHDEII+GC+SG+ S MA+TDLL  GF  ITDIAGG+ AW +N L
Sbjct:   119 VKNPSFLRQVSSHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGYVAWTENEL 178

Query:   180 PTE 182
             P E
Sbjct:   179 PVE 181

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=IEP;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2156937 STR16 "AT5G66040" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 77/113 (68%), Positives = 91/113 (80%)

Query:    71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
             VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct:     7 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66

Query:   131 STRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPTE 182
             S+ F + D IIVGCQSG RS+ A TDLL+ GF G+ DI GG++AW +NGLPT+
Sbjct:    67 SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 119

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2156882 STR18 "AT5G66170" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 53/125 (42%), Positives = 77/125 (61%)

Query:    61 SLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGS 118
             S+  + +A  V  SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     
Sbjct:     4 SISSSTKAEEV-VSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ 62

Query:   119 GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL---NGFAGITDIAGGFAAWR 175
             G  KN +F+E+VS+     D+I+VGCQSG RS+ A T+L+   +G+  + ++ GG+ AW 
Sbjct:    63 GRVKNQEFLEQVSSLLNPADDILVGCQSGARSLKATTELVAAVSGYKKVRNVGGGYLAWV 122

Query:   176 QNGLP 180
              +  P
Sbjct:   123 DHSFP 127

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:505006261 AT2G21045 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 43/106 (40%), Positives = 63/106 (59%)

Query:    74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
             +V V  A   L  GHRYLDVRT EEF+  H   A+N+PYM++   G   N  F+ +V++ 
Sbjct:    43 TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASV 102

Query:   134 FRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNG 178
              +K + +IV C +G R   A  DLLN G+  + ++ GG++AW   G
Sbjct:   103 CKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAG 148

GO:0005737 "cytoplasm" evidence=ISM

GO:0007568 "aging" evidence=ISS;TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2827795 AT2G17850 "AT2G17850" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 47/144 (32%), Positives = 75/144 (52%)

Query:    44 DNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRV--AHELLQAGHRYLDVRTPEEFSA 101
             D++  + S +L F     L     ++  P  + + V  A +LL +G+ +LDVRT EEF  
Sbjct:     2 DSLHVLRSFLLLFIVFNHLPRTTTSMSEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKK 61

Query:   102 GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN 159
             GH  +    NVPY      G   N  F++ VS+   + D +I+GC+SG RS+ A   L++
Sbjct:    62 GHVDSENVFNVPYWLYTPQGQEINPNFLKHVSSLCNQTDHLILGCKSGVRSLHATKFLVS 121

Query:   160 -GFAGITDIAGGFAAWRQNGLPTE 182
              GF  + ++ GG+ AW     P +
Sbjct:   122 SGFKTVRNMDGGYIAWVNKRFPVK 145

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

UNIPROTKB|Q607E4 MCA1816 "Sulfurtransferase" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 44/94 (46%), Positives = 57/94 (60%)

Query:    91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDE-IIVGCQSGK 148
             LDVR PEE++AGH  GAIN+P       G+   ++F  E    F+ K D  I+V CQSG 
Sbjct:    34 LDVREPEEYAAGHLPGAINIP------RGV---VEFRIETHPVFQGKKDAAIVVYCQSGL 84

Query:   149 RSMMAATDLLN--GFAGITDIAGGFAAWRQNGLP 180
             RS +A TD+L   G+ G   +AGGF AW + GLP
Sbjct:    85 RSTLA-TDILQQLGWRGTVSMAGGFKAWIEGGLP 117

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z6P8 DET1392 "Sulfurtransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 39/93 (41%), Positives = 50/93 (53%)

Query:    91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
             LDVRTP E++ GH  GA+N+ Y Y           F   +S  F K    +V C++G RS
Sbjct:    62 LDVRTPSEYAQGHIPGAVNLDY-YA---------SFEASLSA-FDKTKTYLVYCRTGNRS 110

Query:   151 MMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
               AA  +L NGFA I ++ GG  AW   GLP E
Sbjct:   111 ASAARLMLDNGFAAIYNMQGGINAWISGGLPLE 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1392 DET_1392 "rhodanese-like domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 39/93 (41%), Positives = 50/93 (53%)

Query:    91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
             LDVRTP E++ GH  GA+N+ Y Y           F   +S  F K    +V C++G RS
Sbjct:    62 LDVRTPSEYAQGHIPGAVNLDY-YA---------SFEASLSA-FDKTKTYLVYCRTGNRS 110

Query:   151 MMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
               AA  +L NGFA I ++ GG  AW   GLP E
Sbjct:   111 ASAARLMLDNGFAAIYNMQGGINAWISGGLPLE 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3148 CPS_3148 "putative phage shock protein E" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query:    91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF-VEEVSTRFRKHDEIIVGCQSGKR 149
             LDVRT EEF  GH   A+N+P+         K L+  + E++    K+ ++++ C+SG+R
Sbjct:    48 LDVRTEEEFEEGHIPNAVNIPH---------KELEARLAELTGA--KNTQVVIYCRSGRR 96

Query:   150 SMMAATDLL-NGFAGITDIAGGFAAWRQNGLP 180
             + +A   L+ NGF  +  ++G F  W  N LP
Sbjct:    97 AEVAREVLVKNGFNELDHLSGDFNEWSSNNLP 128

GO:0009271 "phage shock" evidence=ISS

GO:0016740 "transferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38853	STR15_ARATH	No assigned EC number	0.5340	0.9398	0.9450	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.1	0.914
3rd Layer	2.8.1	0.921

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
PLN02160	136	PLN02160, PLN02160, thiosulfate sulfurtransferase	5e-26
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	2e-19
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	1e-18
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	4e-18
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	7e-16
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	2e-15
cd01522	117	cd01522, RHOD_1, Member of the Rhodanese Homology	2e-10
cd01526	122	cd01526, RHOD_ThiF, Member of the Rhodanese Homolo	3e-10
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	1e-09
cd01527	99	cd01527, RHOD_YgaP, Member of the Rhodanese Homolo	5e-09
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	3e-08
PRK00162	108	PRK00162, glpE, thiosulfate sulfurtransferase; Val	9e-08
cd01528	101	cd01528, RHOD_2, Member of the Rhodanese Homology	2e-07
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	2e-07
cd01529	96	cd01529, 4RHOD_Repeats, Member of the Rhodanese Ho	2e-06
PRK10287	104	PRK10287, PRK10287, thiosulfate:cyanide sulfurtran	3e-06
COG2897	285	COG2897, SseA, Rhodanese-related sulfurtransferase	5e-06
cd01449	118	cd01449, TST_Repeat_2, Thiosulfate sulfurtransfera	1e-05
TIGR02981	101	TIGR02981, phageshock_pspE, phage shock operon rho	1e-05
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	2e-05
cd01444	96	cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and	5e-05
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	6e-05
cd01520	128	cd01520, RHOD_YbbB, Member of the Rhodanese Homolo	1e-04
PRK11784	345	PRK11784, PRK11784, tRNA 2-selenouridine synthase;	1e-04
TIGR03167	311	TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine s	3e-04
cd01534	95	cd01534, 4RHOD_Repeat_3, Member of the Rhodanese H	0.001
cd01523	100	cd01523, RHOD_Lact_B, Member of the Rhodanese Homo	0.001
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	0.003

>gnl|CDD|177819 PLN02160, PLN02160, thiosulfate sulfurtransferase

 Score = 96.7 bits (240), Expect = 5e-26
 Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 3/111 (2%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVS 131
           SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     G  KN +F+E+VS
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVS 75

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPT 181
           +     D+I+VGCQSG RS+ A T+L+  G+  + +  GG+ AW  +  P 
Sbjct: 76  SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPI 126

Length = 136

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 78.7 bits (194), Expect = 2e-19
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE--VSTRFRKHDEIIV 142
                 LDVR+PEE+  GH  GA+N+P    +      ++   EE        K   ++V
Sbjct: 2   DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVV 61

Query: 143 GCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLP 180
            C+SG RS  AA  L   GF  +  + GG+  W   G P
Sbjct: 62  YCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 76.4 bits (188), Expect = 1e-18
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           +DVR+PEE++ GH  GA+N+P        +   L   EE+  +  K   I+V C SG RS
Sbjct: 17  IDVRSPEEYAKGHIPGAVNIPLSLPSLDKLESEL---EELGKKLDKDKTIVVYCASGNRS 73

Query: 151 MMAATDLL------NGFAGITDIAGGFAAWRQ 176
             AA  LL       G+  +  + GGF AW+ 
Sbjct: 74  GQAAALLLALILKALGYKNVYVLDGGFEAWKA 105

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 74.6 bits (184), Expect = 4e-18
 Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 80  AHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHD 138
             ELL       LDVR PEE++AGH  GAIN+P            L+          K  
Sbjct: 2   LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLS---------ELEE-RAALLELDKDK 51

Query: 139 EIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWR 175
            I+V C+SG RS  AA  L   G   + ++ GG  AW+
Sbjct: 52  PIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 73.9 bits (182), Expect = 7e-16
 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 15/107 (14%)

Query: 80  AHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHD 138
           A      G   +DVR   E ++G A GA+ +P              F+E  + T     D
Sbjct: 10  ARARAAQGAVLIDVREAHERASGQAEGALRIPR------------GFLELRIETHLPDRD 57

Query: 139 -EIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPTEP 183
            EI++ C SG RS  AA  L   G+  +  +AGGF+AW+  GLP E 
Sbjct: 58  REIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLER 104

Length = 376

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 68.0 bits (166), Expect = 2e-15
 Identities = 37/113 (32%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 73  TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVS 131
           T      A  L       LDVR PEE+  GH  G AIN+P        +++       + 
Sbjct: 6   TISEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIP--------LSELKAAENLLE 57

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPTEP 183
                 D I+V C SG RS  AA  L   GF  + ++ GG  AW+  GLP   
Sbjct: 58  --LPDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108

Length = 110

>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 12/108 (11%)

Query: 80  AHELLQAGHR--YLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK 136
           A  LLQA  +   +DVRT  E+   G    A++V +  +V   M  N  F+ E+  +  K
Sbjct: 6   AWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAW--QVYPDMEINPNFLAELEEKVGK 63

Query: 137 HDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF------AAWRQN 177
              +++ C+SG RS+ AA      GF  + ++  GF      A  R  
Sbjct: 64  DRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAGHRGG 111

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117

>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain superfamily

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 36/108 (33%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 82  ELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN--LKFVEEVSTRFRKH 137
            +LQAG  H  LDVR    F       AIN+P    +   ++K   LK ++E+     K 
Sbjct: 17  NILQAGKKHVLLDVRPKVHFEICRLPEAINIP----LSELLSKAAELKSLQELPLDNDKD 72

Query: 138 DEIIVGCQSGKRSMMAATDL--LNGFAGITDIAGGFAAWRQNGLPTEP 183
             I V C+ G  S  A   L  L     + DI GG  AW     PT P
Sbjct: 73  SPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFP 120

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Length = 122

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 20/88 (22%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR---KHDEIIVGCQSG 147
           +DVRTP+EF  GH  GAIN+P               ++E+  R     K  EIIV C  G
Sbjct: 17  IDVRTPQEFEKGHIKGAINIP---------------LDELRDRLNELPKDKEIIVYCAVG 61

Query: 148 KRSMMAATDLLN-GFAGITDIAGGFAAW 174
            R  +AA  L   GF  + ++ GG+  +
Sbjct: 62  LRGYIAARILTQNGFK-VKNLDGGYKTY 88

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

>gnl|CDD|238785 cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily

 Score = 50.9 bits (122), Expect = 5e-09
 Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 21/114 (18%)

Query: 73  TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 132
           T++    A ELL  G   +D+R P+E+      GA  VP            L  +E    
Sbjct: 2   TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVP------------LSQLESEGL 49

Query: 133 RFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITD-----IAGGFAAWRQNGLPT 181
                + II  C+SG R+   A  L    A I+      + GG  AW+  GLP 
Sbjct: 50  PLVGANAIIFHCRSGMRTQQNAERL----AAISAGEAYVLEGGLDAWKAAGLPV 99

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases. Length = 99

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 20/94 (21%)

Query: 92  DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH---------DEIIV 142
           DVR PEE   G   GAIN+P      S +   L   EE    F K           E+I 
Sbjct: 20  DVREPEELKTGKIPGAINIPL-----SSLPDALALSEE---EFEKKYGFPKPSKDKELIF 71

Query: 143 GCQSGKRSMMAATDLLN--GFAGITDIAGGFAAW 174
            C++G RS  AA +L    G+  + +  G +  W
Sbjct: 72  YCKAGVRS-KAAAELARSLGYENVGNYPGSWLDW 104

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|178908 PRK00162, glpE, thiosulfate sulfurtransferase; Validated

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 20/111 (18%)

Query: 75  VPVRVAHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           + V  AH+ L + G   +D+R P+ F+ GHA GA ++            N    + +   
Sbjct: 7   INVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHL-----------TN----DSLGAF 51

Query: 134 FRKHD---EIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLP 180
            R+ D    ++V C  G  S  AA  LL  GF  +  I GGF AWR+    
Sbjct: 52  MRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPA 102

Length = 108

>gnl|CDD|238786 cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           +DVR PEE       G +++P        M++  +  +E+        +I+V C  G RS
Sbjct: 21  IDVREPEELEIAFLPGFLHLP--------MSEIPERSKEL-DSDNPDKDIVVLCHHGGRS 71

Query: 151 MMAATDLL-NGFAGITDIAGGFAAWRQ 176
           M  A  LL  GF  + ++ GG  AW  
Sbjct: 72  MQVAQWLLRQGFENVYNLQGGIDAWSL 98

Subgroup 2 includes uncharacterized putative rhodanese-related domains. Length = 101

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 15/92 (16%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE--VSTRFRKHDEIIVGC 144
           G   +DVR P EF+A    GA NVP            L  + E          DE++V C
Sbjct: 274 GVTLIDVREPSEFAAYSIPGAHNVP------------LSAIREGANPPSVSAGDEVVVYC 321

Query: 145 QSGKRSMMAATDLLN-GFAGITDIAGGFAAWR 175
            +G RS  A   L   G+ G++ + GG   W 
Sbjct: 322 AAGVRSAQAVAILERAGYTGMSSLDGGIEGWL 353

Length = 355

>gnl|CDD|238787 cd01529, 4RHOD_Repeats, Member of the Rhodanese Homology Domain superfamily

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS 146
           G   LDVR  +E++AGH  G  ++P    V              +TR       ++ C  
Sbjct: 12  GTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATR------YVLTCDG 65

Query: 147 GKRSMMAATDLLNGFAGITDIA---GGFAAWR 175
              +  AA +LL    G   +A   GG +AW 
Sbjct: 66  SLLARFAAQELLA--LGGKPVALLDGGTSAWV 95

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats. Length = 96

>gnl|CDD|182356 PRK10287, PRK10287, thiosulfate:cyanide sulfurtransferase; Provisional

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 26/115 (22%)

Query: 62  LRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT 121
            +  L A+ +  S+P       + A   ++DVR PE++   H  GAIN+P          
Sbjct: 2   FKKGLLALALVFSLP-------VFAAEHWIDVRVPEQYQQEHVQGAINIPL--------- 45

Query: 122 KNLKFVEEVSTRFR-KHDEIIVGCQSGKRSMMAATDLLN-GF------AGITDIA 168
           K +K  E ++T    K+D + + C +G++S  A   L   G+       G+ DIA
Sbjct: 46  KEVK--ERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLKDIA 98

Length = 104

>gnl|CDD|225450 COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 23/112 (20%)

Query: 91  LDVRTPEEFS----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH--- 137
           +D R+PE F           AGH  GAIN+P+   V  G     K  EE++  +      
Sbjct: 175 IDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLF--KSPEEIARLYADAGID 232

Query: 138 --DEIIVGCQSGKRS---MMAATDLLNGFAGITDIAGGFAAWRQ-NGLPTEP 183
              E+IV C SG R+    +A  +L  G        G ++ W      P E 
Sbjct: 233 PDKEVIVYCGSGVRASVTWLALAEL--GGPNNRLYDGSWSEWGSDPDRPVET 282

Length = 285

>gnl|CDD|238726 cd01449, TST_Repeat_2, Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 22/78 (28%)

Query: 91  LDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMT--KNLKFVEEVSTRFRKH 137
           +D R+PE F            +GH  GA+N+P+     S +      K  EE+   F   
Sbjct: 18  VDARSPERFRGEVPEPRPGLRSGHIPGAVNIPW----TSLLDEDGTFKSPEELRALFAAL 73

Query: 138 -----DEIIVGCQSGKRS 150
                  +IV C SG  +
Sbjct: 74  GITPDKPVIVYCGSGVTA 91

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue. Length = 118

>gnl|CDD|132026 TIGR02981, phageshock_pspE, phage shock operon rhodanese PspE

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 27/97 (27%)

Query: 84  LQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-----KHD 138
           L A   ++DVR PE++   H  GAIN+P               ++E+          K+D
Sbjct: 15  LFAAEHWIDVRIPEQYQQEHIQGAINIP---------------LKEIKEHIATAVPDKND 59

Query: 139 EIIVGCQSGKRSMMAATDLLN-GF------AGITDIA 168
            + + C +G++S MA   LL+ G+       GI DIA
Sbjct: 60  TVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIKDIA 96

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely. Length = 101

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 16/110 (14%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVST-- 132
           P      L   G   +DVR P E    G   GA + P       GM   L+F  +  +  
Sbjct: 3   PEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAP------RGM---LEFWADPDSPY 53

Query: 133 ---RFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNG 178
               F +    +  C SG RS +A   L + G   + +I GGF  W++ G
Sbjct: 54  HKPAFAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|238721 cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 21/103 (20%)

Query: 80  AHELLQAGHR--YLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
             ELL AG     LDVR P  ++A   H  GAI++            +   +++      
Sbjct: 7   LAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHL------------DEDSLDDWLGDLD 54

Query: 136 KHDEIIVGCQSGKRSMMAATDLLNGFAGITD---IAGGFAAWR 175
           +   ++V C  G  S   A  L    AG TD   +AGGF AWR
Sbjct: 55  RDRPVVVYCYHGNSSAQLAQALRE--AGFTDVRSLAGGFEAWR 95

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine. Length = 96

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 16/113 (14%)

Query: 77  VRVAHELLQAGHR---YLDVRTPEEFSAGHATGAINVPYM-YRVGSGMTKNLKFVEEVST 132
           V     LL +G      +DVR P E+      G++ VP      G G+ K    V+E+  
Sbjct: 286 VTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEK----VKELL- 340

Query: 133 RFRKHDEIIVGCQSGKRSMMAATDLLNGFAGI--TDIAGGFAAWRQNGLPTEP 183
                  +I  C+ G RS  A   L    AGI  T++ GG  AW +   P+ P
Sbjct: 341 ---NGHRLIAHCKMGGRSAKALGILKE--AGIEGTNVKGGITAWSREVDPSVP 388

Length = 390

>gnl|CDD|238778 cd01520, RHOD_YbbB, Member of the Rhodanese Homology Domain superfamily

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 28/121 (23%)

Query: 82  ELLQAGHRYLDVRTPEEFSAGHATGAINVPYM-----YRVG----------------SGM 120
            L +A    +DVR+P+EF  GH  GAIN+P +       VG                  +
Sbjct: 8   ALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELV 67

Query: 121 TKNLK-FVEEVSTRFRKHD-EIIVGC-QSGKRSMMAATDLLNGFAGITD--IAGGFAAWR 175
           +  LK  + E      + D ++++ C + G RS   +   L    GI    + GG+ A+R
Sbjct: 68  SGKLKRILNEAWEARLERDPKLLIYCARGGMRS--QSLAWLLESLGIDVPLLEGGYKAYR 125

Query: 176 Q 176
           +
Sbjct: 126 K 126

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB. Length = 128

>gnl|CDD|236982 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 28/121 (23%)

Query: 82  ELLQAGHRYLDVRTPEEFSAGHATGAINVPYM-----------Y---------RVGSGMT 121
            L       +DVR+P EF+ GH  GAIN+P +           Y          +G  + 
Sbjct: 10  ALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALV 69

Query: 122 -KNLK-FVEEV-STRFRKHDEIIVGC-QSGKRSMMAATDLLNGFAGI--TDIAGGFAAWR 175
             N+    EE  +   R +   ++ C + G RS       L   AGI    + GG+ A+R
Sbjct: 70  AGNIAAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQ-WLKE-AGIDVPRLEGGYKAYR 127

Query: 176 Q 176
           +
Sbjct: 128 R 128

Length = 345

>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 25/110 (22%)

Query: 91  LDVRTPEEFSAGHATGAINVPYM-----------Y-RVGSGMTKNL----------KFVE 128
           +DVR+P EF+ GH  GAIN+P +           Y +VG      L            VE
Sbjct: 6   IDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVE 65

Query: 129 EVSTRFRKHDEIIVGC-QSGKRSMMAATDL-LNGFAGITDIAGGFAAWRQ 176
           +         + ++ C + G RS   A  L   GF  +  + GG+ A+R+
Sbjct: 66  QWRAFADGPPQPLLYCWRGGMRSGSLAWLLAQIGFR-VPRLEGGYKAYRR 114

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene [Protein synthesis, tRNA and rRNA base modification]. Length = 311

>gnl|CDD|238792 cd01534, 4RHOD_Repeat_3, Member of the Rhodanese Homology Domain superfamily, repeat 3

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 91  LDVRTPEEFSAGHATGAINVP 111
            DVRTPEE+ AGH  G  + P
Sbjct: 20  FDVRTPEEYEAGHLPGFRHTP 40

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue. Length = 95

>gnl|CDD|238781 cd01523, RHOD_Lact_B, Member of the Rhodanese Homology Domain superfamily

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 11/103 (10%)

Query: 76  PVRVAHELLQAGHRY-LDVRTPEEFSAGHATGAINVPY---MYRVGSGMTKNLKFVEEVS 131
           P  +   LL     + LDVR   ++      G  N PY    +         L+  E++ 
Sbjct: 3   PEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDF-------LEIEEDIL 55

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAW 174
            +     E+ V C     S   A  L      +  +AGG  AW
Sbjct: 56  DQLPDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMKAW 98

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain. Length = 100

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 15/131 (11%)

Query: 56  FCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYM 113
           FC   S      A G  +++  R   E L +G +   +DVR P E+   H  GA  +P  
Sbjct: 272 FCGVVSDEAQQAAAG--STITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIP-- 327

Query: 114 YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFA 172
                   K+     E   +  +   I++ C++G RS  A   L   GF+    + GG  
Sbjct: 328 --------KSEILSGEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVV 379

Query: 173 AWRQNGLPTEP 183
           AW +   P+ P
Sbjct: 380 AWAKQVDPSLP 390

Length = 392

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PLN02160	136	thiosulfate sulfurtransferase	99.92
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.92
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.91
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.91
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.9
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.9
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.89
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.89
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.88
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.88
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.88
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.88
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.88
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.88
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.87
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.87
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.87
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.86
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.86
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.86
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.86
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.86
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.86
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.86
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.85
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.85
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.85
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.85
PRK07411	390	hypothetical protein; Validated	99.84
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.84
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.84
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.83
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.83
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.83
PRK01415	247	hypothetical protein; Validated	99.82
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.82
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.82
PRK05320	257	rhodanese superfamily protein; Provisional	99.81
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.81
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.81
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.81
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.81
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.79
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.79
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.79
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.79
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.78
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.78
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.77
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.74
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.73
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.72
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.72
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.69
COG1054	308	Predicted sulfurtransferase [General function pred	99.59
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.48
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.36
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.32
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.27
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.74
COG2603	334	Predicted ATPase [General function prediction only	97.53
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	97.32
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	97.28
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	96.11
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.1
KOG3636	669	consensus Uncharacterized conserved protein, conta	94.88
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	94.05
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	93.85
KOG1717	343	consensus Dual specificity phosphatase [Defense me	93.82
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	93.81
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	93.21
COG3453	130	Uncharacterized protein conserved in bacteria [Fun	92.16
PLN02727	986	NAD kinase	90.79
PF00782	133	DSPc: Dual specificity phosphatase, catalytic doma	88.82
PF05706	168	CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3)	87.04
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	86.97
COG2453	180	CDC14 Predicted protein-tyrosine phosphatase [Sign	85.2
PRK12361	547	hypothetical protein; Provisional	81.7

>PLN02160 thiosulfate sulfurtransferase

Probab=99.92  E-value=1.1e-24  Score=159.09  Aligned_cols=113  Identities=44%  Similarity=0.806  Sum_probs=94.5

Q ss_pred             CCcccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCc--eecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104           71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgA--vnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (183)
                      ....++++++.++++++.+|||||++.||..||||||  +|+|+..........+.+++......++++++||+||++|.
T Consensus        13 ~~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~   92 (136)
T PLN02160         13 EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGA   92 (136)
T ss_pred             eeeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcH
Confidence            3567889999998887788999999999999999999  89997543323333445555555444678899999999999


Q ss_pred             HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          149 RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ||..++..|. .||++|++|.||+.+|.++|+|+.+
T Consensus        93 RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  128 (136)
T PLN02160         93 RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQ  128 (136)
T ss_pred             HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccc
Confidence            9999999999 9999999999999999999999863

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.6e-24  Score=153.11  Aligned_cols=114  Identities=40%  Similarity=0.697  Sum_probs=103.1

Q ss_pred             CCCCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCC-CCeEEEEcCC
Q 030104           69 VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK-HDEIIVGCQS  146 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ivv~c~~  146 (183)
                      .+.+..++.++++.+.+.+ +++||||+++||..||+|.++|||+...-+.+...+++|++......++ ++.|||+|.+
T Consensus        19 ~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~S   98 (136)
T KOG1530|consen   19 ASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCAS   98 (136)
T ss_pred             cCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEecc
Confidence            3567789999999999988 9999999999999999999999999766677888899999988776654 5699999999


Q ss_pred             chHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          147 GKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       147 g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      |.||..|...|. .||+||.++.|||.+|.+.++|..
T Consensus        99 G~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~  135 (136)
T KOG1530|consen   99 GVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK  135 (136)
T ss_pred             CcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence            999999999999 999999999999999999998864

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.91  E-value=5.5e-24  Score=149.62  Aligned_cols=98  Identities=22%  Similarity=0.362  Sum_probs=83.4

Q ss_pred             CCCCcccCHHHHHHHHhCC--CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEc
Q 030104           69 VGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGC  144 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c  144 (183)
                      ......++++++.++++.+  .+|||||++.||..||||||+|+|+            ..+......+  +++++|||||
T Consensus         6 ~~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~------------~~l~~~~~~l~~~~~~~ivv~C   73 (109)
T cd01533           6 VRHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPG------------AELVLRVGELAPDPRTPIVVNC   73 (109)
T ss_pred             cccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCH------------HHHHHHHHhcCCCCCCeEEEEC
Confidence            3455678999999888754  6899999999999999999999998            3444444444  4578999999


Q ss_pred             CCchHHHHHHHHHH-cCCCC-eeEccccHHHhhhCC
Q 030104          145 QSGKRSMMAATDLL-NGFAG-ITDIAGGFAAWRQNG  178 (183)
Q Consensus       145 ~~g~~s~~a~~~L~-~G~~~-v~~l~GG~~~W~~~g  178 (183)
                      .+|.||..+++.|+ .||++ |++|+||+.+|..+|
T Consensus        74 ~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          74 AGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             CCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence            99999999999999 99988 999999999999875

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.91  E-value=6.7e-24  Score=146.54  Aligned_cols=97  Identities=31%  Similarity=0.487  Sum_probs=84.9

Q ss_pred             cccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHH
Q 030104           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~  152 (183)
                      ..++++++.++++.+.+|||+|++++|..||||||+|+|+.            .+......++++++||+||++|.++..
T Consensus         2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~iv~~c~~g~~s~~   69 (99)
T cd01527           2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLS------------QLESEGLPLVGANAIIFHCRSGMRTQQ   69 (99)
T ss_pred             CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChh------------HhcccccCCCCCCcEEEEeCCCchHHH
Confidence            46789999988887899999999999999999999999984            222222346788999999999999999


Q ss_pred             HHHHHH-cCCCCeeEccccHHHhhhCCCCC
Q 030104          153 AATDLL-NGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       153 a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      ++..|. .||++|++|+||+.+|...|+|+
T Consensus        70 ~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          70 NAERLAAISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             HHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence            999999 99999999999999999999875

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.90  E-value=2.5e-23  Score=146.07  Aligned_cols=100  Identities=32%  Similarity=0.497  Sum_probs=88.6

Q ss_pred             CCcccCHHHHHHHHhC-CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchH
Q 030104           71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  149 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~  149 (183)
                      ..+.++++++.+++++ +.++||||++.||..||||||+|+|+            ..+......++++++|+|||.+|.+
T Consensus         3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~~   70 (108)
T PRK00162          3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTN------------DSLGAFMRQADFDTPVMVMCYHGNS   70 (108)
T ss_pred             CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCH------------HHHHHHHHhcCCCCCEEEEeCCCCC
Confidence            3467889999988854 48999999999999999999999998            4455555667889999999999999


Q ss_pred             HHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          150 SMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       150 s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      |..++..|+ .||++|++|+||+.+|.+.+.|++
T Consensus        71 s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~  104 (108)
T PRK00162         71 SQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEV  104 (108)
T ss_pred             HHHHHHHHHHCCchheEEecCCHHHHHhcCCCcc
Confidence            999999999 999999999999999999999876

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=6.3e-24  Score=147.33  Aligned_cols=98  Identities=26%  Similarity=0.346  Sum_probs=78.6

Q ss_pred             cccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHH
Q 030104           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~  151 (183)
                      ..++++++.++++++ .+|||||++.||..||||||+|+|+..+.     .....+... ..++++++|||||++|.||.
T Consensus         2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~-----~~~~~~~~~-~~~~~~~~ivvyC~~G~rs~   75 (101)
T cd01518           2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFR-----EFPFWLDEN-LDLLKGKKVLMYCTGGIRCE   75 (101)
T ss_pred             CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHh-----HhHHHHHhh-hhhcCCCEEEEECCCchhHH
Confidence            357888998887654 89999999999999999999999985211     001112111 12368899999999999999


Q ss_pred             HHHHHHH-cCCCCeeEccccHHHhhh
Q 030104          152 MAATDLL-NGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus       152 ~a~~~L~-~G~~~v~~l~GG~~~W~~  176 (183)
                      .+++.|. .||++|++|+||+.+|.+
T Consensus        76 ~a~~~L~~~G~~~v~~l~GG~~~W~~  101 (101)
T cd01518          76 KASAYLKERGFKNVYQLKGGILKYLE  101 (101)
T ss_pred             HHHHHHHHhCCcceeeechhHHHHhC
Confidence            9999999 999999999999999973

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=1.1e-22  Score=145.90  Aligned_cols=109  Identities=29%  Similarity=0.382  Sum_probs=86.3

Q ss_pred             CCCCcccCHHHHHHHHhC--CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHH---HHhcCCCCCeEEEE
Q 030104           69 VGVPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE---VSTRFRKHDEIIVG  143 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~---~~~~l~~~~~ivv~  143 (183)
                      .+....++++++.+++++  +++|||||++.||..||||||+|||+..+...     ...+..   ....++++++||+|
T Consensus         4 ~~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~-----~~~~~~~~~~~~~~~~~~~ivv~   78 (122)
T cd01526           4 LSPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK-----AAELKSLQELPLDNDKDSPIYVV   78 (122)
T ss_pred             CCcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh-----hhhhhhhhhcccccCCCCcEEEE
Confidence            456678999999988865  37899999999999999999999998532110     000000   01224778999999


Q ss_pred             cCCchHHHHHHHHHH-cCC-CCeeEccccHHHhhhCCCCCC
Q 030104          144 CQSGKRSMMAATDLL-NGF-AGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       144 c~~g~~s~~a~~~L~-~G~-~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      |++|.+|..++..|+ .|| ++|++|+||+.+|..+..+..
T Consensus        79 C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~~  119 (122)
T cd01526          79 CRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTF  119 (122)
T ss_pred             CCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCccC
Confidence            999999999999999 999 799999999999998876653

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=1.2e-22  Score=140.56  Aligned_cols=96  Identities=26%  Similarity=0.388  Sum_probs=78.0

Q ss_pred             cCHHHHHHHHhCC--CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHH
Q 030104           75 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (183)
Q Consensus        75 i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~  152 (183)
                      |+++++.++++++  .+|||||++.||..||||||+|+|+......    ...........++++++|||||.+|.+|..
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~----~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~   76 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD----FLEIEEDILDQLPDDQEVTVICAKEGSSQF   76 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH----HHHhhHHHHhhCCCCCeEEEEcCCCCcHHH
Confidence            5778888888764  7999999999999999999999998521100    000113345667889999999999999999


Q ss_pred             HHHHHH-cCCCCeeEccccHHHhh
Q 030104          153 AATDLL-NGFAGITDIAGGFAAWR  175 (183)
Q Consensus       153 a~~~L~-~G~~~v~~l~GG~~~W~  175 (183)
                      ++..|+ .||+ +++|.||+.+|.
T Consensus        77 aa~~L~~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          77 VAELLAERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             HHHHHHHcCce-eEEeCCcHHhhc
Confidence            999999 9998 999999999996

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=2.2e-22  Score=136.81  Aligned_cols=88  Identities=36%  Similarity=0.626  Sum_probs=78.5

Q ss_pred             cCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHH
Q 030104           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA  154 (183)
Q Consensus        75 i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~  154 (183)
                      ++++++.+++.++.++||+|++.+|..||||||+|+|.            ..+......++++++||+||++|.++..++
T Consensus         1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~------------~~~~~~~~~~~~~~~vvl~c~~g~~a~~~a   68 (90)
T cd01524           1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPL------------DELRDRLNELPKDKEIIVYCAVGLRGYIAA   68 (90)
T ss_pred             CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCH------------HHHHHHHHhcCCCCcEEEEcCCChhHHHHH
Confidence            46788888887778999999999999999999999998            344555556788899999999999999999


Q ss_pred             HHHH-cCCCCeeEccccHHHhh
Q 030104          155 TDLL-NGFAGITDIAGGFAAWR  175 (183)
Q Consensus       155 ~~L~-~G~~~v~~l~GG~~~W~  175 (183)
                      ..|+ .|| ++++|+||+.+|.
T Consensus        69 ~~L~~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          69 RILTQNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             HHHHHCCC-CEEEecCCHHHhc
Confidence            9999 999 9999999999996

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=1.4e-22  Score=146.51  Aligned_cols=101  Identities=29%  Similarity=0.480  Sum_probs=78.8

Q ss_pred             cCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCC----CC------------------CCHHHHHHHH-
Q 030104           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----MT------------------KNLKFVEEVS-  131 (183)
Q Consensus        75 i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~----~~------------------~~~~~~~~~~-  131 (183)
                      |++++++++++++.+|||||++.||..||||||+|||+.......    ..                  ..++++.... 
T Consensus         1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd01520           1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE   80 (128)
T ss_pred             CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            578899988887789999999999999999999999985321100    00                  0011222222 


Q ss_pred             hcCCCCCeEEEEcC-CchHHHHHHHHHH-cCCCCeeEccccHHHhhh
Q 030104          132 TRFRKHDEIIVGCQ-SGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus       132 ~~l~~~~~ivv~c~-~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~  176 (183)
                      ..++++++|||||+ +|.||..+++.|+ +|| +|++|+||+.+|..
T Consensus        81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             hccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence            35788999999997 6899999999999 999 69999999999975

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=2.7e-22  Score=141.27  Aligned_cols=97  Identities=27%  Similarity=0.485  Sum_probs=83.5

Q ss_pred             CcccCHHHHHHHHhCC---CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHH-HHHhcCCCCCeEEEEcCCc
Q 030104           72 PTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHDEIIVGCQSG  147 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ivv~c~~g  147 (183)
                      ...++++++.++++.+   .+|||||++.+|..||||||+|+|..            .+. +....++++++|||||++|
T Consensus         7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~~i~~~~~vvvyc~~g   74 (110)
T cd01521           7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR------------EICENATAKLDKEKLFVVYCDGP   74 (110)
T ss_pred             eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH------------HhhhHhhhcCCCCCeEEEEECCC
Confidence            4568889999888653   79999999999999999999999984            233 4455678899999999987


Q ss_pred             h--HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCC
Q 030104          148 K--RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       148 ~--~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      .  ++..+++.|+ .||+ +++|+||+.+|..+|+|+
T Consensus        75 ~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          75 GCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             CCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence            4  8999999999 9995 999999999999999885

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=1.4e-22  Score=141.39  Aligned_cols=100  Identities=26%  Similarity=0.374  Sum_probs=79.3

Q ss_pred             CHHHHHHHHh-C-CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHH
Q 030104           76 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM  151 (183)
Q Consensus        76 ~~~~~~~~~~-~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~  151 (183)
                      +++++.++++ . +.+|||+|++.||..||||||+|+|+....... ....+.+...+..  ++++++||+||++|.+|.
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~   80 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-ALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSK   80 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-CCCHHHHHHHhcccCCCCCCeEEEECCCcHHHH
Confidence            4667777776 4 489999999999999999999999986432221 2223334444432  457889999999999999


Q ss_pred             HHHHHHH-cCCCCeeEccccHHHhhh
Q 030104          152 MAATDLL-NGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus       152 ~a~~~L~-~G~~~v~~l~GG~~~W~~  176 (183)
                      .+++.|. .||++|++|+||+.+|.+
T Consensus        81 ~~~~~l~~~G~~~v~~~~Gg~~~W~~  106 (106)
T cd01519          81 AAAELARSLGYENVGNYPGSWLDWAA  106 (106)
T ss_pred             HHHHHHHHcCCccceecCCcHHHHcC
Confidence            9999999 999999999999999963

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.88  E-value=2.9e-22  Score=137.47  Aligned_cols=89  Identities=29%  Similarity=0.384  Sum_probs=73.0

Q ss_pred             cCHHHHHHHHhCC---CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC-CCCCeEEEEcCCchHH
Q 030104           75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVGCQSGKRS  150 (183)
Q Consensus        75 i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ivv~c~~g~~s  150 (183)
                      |+++++.++++++   +++||||++.||..||||||+|+|+.           ++........ .++++||+||.+|.+|
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~-----------~l~~~~~~~~~~~~~~iv~~c~~G~rs   69 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG-----------QLVQETDHFAPVRGARIVLADDDGVRA   69 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH-----------HHHHHHHHhcccCCCeEEEECCCCChH
Confidence            5778888887653   67999999999999999999999984           2222211112 2467999999999999


Q ss_pred             HHHHHHHH-cCCCCeeEccccHHHhh
Q 030104          151 MMAATDLL-NGFAGITDIAGGFAAWR  175 (183)
Q Consensus       151 ~~a~~~L~-~G~~~v~~l~GG~~~W~  175 (183)
                      ..++..|. .||+ |++|+||+.+|.
T Consensus        70 ~~aa~~L~~~G~~-v~~l~GG~~~W~   94 (95)
T cd01534          70 DMTASWLAQMGWE-VYVLEGGLAAAL   94 (95)
T ss_pred             HHHHHHHHHcCCE-EEEecCcHHHhc
Confidence            99999999 9998 999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.88  E-value=4.5e-22  Score=137.95  Aligned_cols=91  Identities=32%  Similarity=0.551  Sum_probs=77.3

Q ss_pred             cCHHHHHHHHhCC---CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC---CCCCeEEEEcCCch
Q 030104           75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEIIVGCQSGK  148 (183)
Q Consensus        75 i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l---~~~~~ivv~c~~g~  148 (183)
                      |+++++.++++.+   .+|||+|++.||..+|||||+|+|+.            .+......+   +++++||+||++|.
T Consensus         2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g~   69 (101)
T cd01528           2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHGG   69 (101)
T ss_pred             CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence            6788888887754   78999999999999999999999983            222333333   35889999999999


Q ss_pred             HHHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104          149 RSMMAATDLL-NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~  177 (183)
                      +|..++..|. .||++|++|+||+.+|.+.
T Consensus        70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~   99 (101)
T cd01528          70 RSMQVAQWLLRQGFENVYNLQGGIDAWSLE   99 (101)
T ss_pred             hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence            9999999999 9999999999999999864

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=7.6e-22  Score=135.16  Aligned_cols=89  Identities=34%  Similarity=0.591  Sum_probs=79.5

Q ss_pred             cCHHHHHHHHhC--CCEEEEcCChhhHhc--cCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHH
Q 030104           75 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (183)
Q Consensus        75 i~~~~~~~~~~~--~~~lIDvR~~~e~~~--ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s  150 (183)
                      ++++++.+++++  +++|||+|++.+|..  ||||||+|+|+            ..+......++++++|||||.+|.++
T Consensus         2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~------------~~~~~~~~~~~~~~~ivv~c~~g~~s   69 (96)
T cd01444           2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDE------------DSLDDWLGDLDRDRPVVVYCYHGNSS   69 (96)
T ss_pred             cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCH------------HHHHHHHhhcCCCCCEEEEeCCCChH
Confidence            677888888776  389999999999999  99999999998            34555556688999999999999999


Q ss_pred             HHHHHHHH-cCCCCeeEccccHHHhh
Q 030104          151 MMAATDLL-NGFAGITDIAGGFAAWR  175 (183)
Q Consensus       151 ~~a~~~L~-~G~~~v~~l~GG~~~W~  175 (183)
                      ..+++.|. .||++|++|+||+.+|.
T Consensus        70 ~~a~~~l~~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          70 AQLAQALREAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             HHHHHHHHHcCCceEEEcCCCHHHhc
Confidence            99999999 99999999999999996

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.87  E-value=7e-22  Score=136.92  Aligned_cols=100  Identities=28%  Similarity=0.433  Sum_probs=76.8

Q ss_pred             cCHHHHHHHHhC-CCEEEEcCChhhH-hccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHH
Q 030104           75 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (183)
Q Consensus        75 i~~~~~~~~~~~-~~~lIDvR~~~e~-~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~  152 (183)
                      ++++++.+++++ +.+|||+|++.+| ..||||||+|+|+..+.. .. ....  ......++++++|||||.+|.++..
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~-~~-~~~~--~~~~~~~~~~~~ivv~c~~g~~s~~   76 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEF-WA-DPDS--PYHKPAFAEDKPFVFYCASGWRSAL   76 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhh-hc-Cccc--cccccCCCCCCeEEEEcCCCCcHHH
Confidence            567888888774 5899999999998 579999999999742110 00 0000  0001136788999999999999999


Q ss_pred             HHHHHH-cCCCCeeEccccHHHhhhCC
Q 030104          153 AATDLL-NGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       153 a~~~L~-~G~~~v~~l~GG~~~W~~~g  178 (183)
                      +++.|. .||++|++|+||+.+|..+|
T Consensus        77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          77 AGKTLQDMGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence            999999 99999999999999998764

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.87  E-value=2.6e-21  Score=145.26  Aligned_cols=110  Identities=20%  Similarity=0.290  Sum_probs=83.6

Q ss_pred             CCCcccCHHHHHHHHhCC-CEEEEcCChh----hHhcc---------CCCCceecCcccccCCCCC-CCHHHHHHHHhc-
Q 030104           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMT-KNLKFVEEVSTR-  133 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~----e~~~g---------hIpgAvnip~~~~~~~~~~-~~~~~~~~~~~~-  133 (183)
                      .....|+++++.++++++ .+|||||++.    ||..|         |||||+|+|+...  ..+. .....+...+.. 
T Consensus        33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~--~~l~~~~~~~~~~~l~~~  110 (162)
T TIGR03865        33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGY--GNLAPAWQAYFRRGLERA  110 (162)
T ss_pred             CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCC--CCCCCchhHHHHHHHHHh
Confidence            345678999999988765 8899999865    45444         9999999996311  1111 111223333322 


Q ss_pred             --CCCCCeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCC
Q 030104          134 --FRKHDEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       134 --l~~~~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                        .+++++||+||.+|. +|..+++.|+ +||++|++|+||+.+|.++|+|+
T Consensus       111 ~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv  162 (162)
T TIGR03865       111 TGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL  162 (162)
T ss_pred             cCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence              268899999999997 8999999999 99999999999999999999985

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.86  E-value=1.3e-21  Score=139.09  Aligned_cols=102  Identities=25%  Similarity=0.460  Sum_probs=84.2

Q ss_pred             cCHHHHHHHHhCC-CEEEEcCChhhHhc-----------cCCCCceecCcccccCC-CCCCCHHHHHHHHhc--CCCCCe
Q 030104           75 VPVRVAHELLQAG-HRYLDVRTPEEFSA-----------GHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDE  139 (183)
Q Consensus        75 i~~~~~~~~~~~~-~~lIDvR~~~e~~~-----------ghIpgAvnip~~~~~~~-~~~~~~~~~~~~~~~--l~~~~~  139 (183)
                      ++++++.++++++ ++|||||+..||..           ||||||+|+|+...... +.+.+.+.++..+..  ++++++
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP   80 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence            4677888877654 89999999999987           99999999999754422 233455666666655  567899


Q ss_pred             EEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh
Q 030104          140 IIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus       140 ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~  176 (183)
                      ||+||++|.+|.++++.|+ .||+++++|+||+.+|.+
T Consensus        81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~  118 (118)
T cd01449          81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS  118 (118)
T ss_pred             EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence            9999999999999999999 999999999999999963

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.86  E-value=2.4e-21  Score=138.57  Aligned_cols=104  Identities=24%  Similarity=0.290  Sum_probs=86.5

Q ss_pred             cCHHHHHHHHhC-CCEEEEcCCh-------hhHhccCCCCceecCcccccC-----CCCCCCHHHHHHHHhc--CCCCCe
Q 030104           75 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE  139 (183)
Q Consensus        75 i~~~~~~~~~~~-~~~lIDvR~~-------~e~~~ghIpgAvnip~~~~~~-----~~~~~~~~~~~~~~~~--l~~~~~  139 (183)
                      ++++++.++++. +.+|||+|++       .+|..||||||+|+|+.....     .+...+.+.+.+.+..  ++++++
T Consensus         2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (122)
T cd01448           2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT   81 (122)
T ss_pred             cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence            678888888876 5889999999       999999999999999865442     2344555566665553  678899


Q ss_pred             EEEEcCC-chHHHHHHHHHH-cCCCCeeEccccHHHhhhCC
Q 030104          140 IIVGCQS-GKRSMMAATDLL-NGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       140 ivv~c~~-g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g  178 (183)
                      |||||++ |.++..+++.|+ .||++|++|+||+.+|..+|
T Consensus        82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence            9999999 589999999999 99999999999999998765

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.86  E-value=3.1e-21  Score=163.27  Aligned_cols=145  Identities=23%  Similarity=0.370  Sum_probs=113.9

Q ss_pred             ecCCCCCccceeccccCCCccceeEEccCCccccccccccCCccccCCCCcccCHHHHHHHHhCC--CEEEEcCChhhHh
Q 030104           23 LCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFS  100 (183)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~lIDvR~~~e~~  100 (183)
                      +|-...+|+. .++.++|.|+.+..+.  +|..+|...+  +..........+++++++++++++  ++|||||++.||.
T Consensus       242 ~d~~~~~~~~-~~~~~~~~C~~~~~~~--~~~~~c~~~~--~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~  316 (392)
T PRK07878        242 YDALEMTYRT-IKIRKDPSTPKITELI--DYEAFCGVVS--DEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWD  316 (392)
T ss_pred             EECCCCceee-EeeccCCCCCcccccc--cchhhccccc--ccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHh
Confidence            6877777776 6777889998766655  6777774322  111123456789999999988764  6899999999999


Q ss_pred             ccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCC
Q 030104          101 AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGL  179 (183)
Q Consensus       101 ~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~  179 (183)
                      .||||||+|+|+..+.          ..+....++++++|||||++|.+|..+++.|+ .||++|++|+||+.+|.++..
T Consensus       317 ~ghIpGAinip~~~l~----------~~~~~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~  386 (392)
T PRK07878        317 IVHIPGAQLIPKSEIL----------SGEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVD  386 (392)
T ss_pred             cCCCCCCEEcChHHhc----------chhHHhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcC
Confidence            9999999999984211          01234567889999999999999999999999 999999999999999998866


Q ss_pred             CCC
Q 030104          180 PTE  182 (183)
Q Consensus       180 pv~  182 (183)
                      +..
T Consensus       387 ~~~  389 (392)
T PRK07878        387 PSL  389 (392)
T ss_pred             CCC
Confidence            543

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=1.4e-21  Score=136.08  Aligned_cols=99  Identities=25%  Similarity=0.382  Sum_probs=75.6

Q ss_pred             cCHHHHHHHHhC---CCEEEEcCChhhHhccCCCCceecCcccccCC-CCCCCHHHHHHHHhcCCCCCeEEEEcCCchHH
Q 030104           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (183)
Q Consensus        75 i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s  150 (183)
                      |+++++++++++   +++|||||++.||..||||||+|+|+...+.. ..........++..  ..+++||+||.+|.+|
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~~s   78 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHKHA   78 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCccH
Confidence            578899988875   37899999999999999999999998643311 00000000111111  2478999999999999


Q ss_pred             HHHHHHHH-cCCCCeeEccccHHHhh
Q 030104          151 MMAATDLL-NGFAGITDIAGGFAAWR  175 (183)
Q Consensus       151 ~~a~~~L~-~G~~~v~~l~GG~~~W~  175 (183)
                      ..+++.|. .||++|++|+||+.+|+
T Consensus        79 ~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          79 ALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             HHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence            99999999 99999999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.86  E-value=2.5e-21  Score=142.91  Aligned_cols=90  Identities=26%  Similarity=0.380  Sum_probs=80.3

Q ss_pred             HHHHhCC--CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH
Q 030104           81 HELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL  158 (183)
Q Consensus        81 ~~~~~~~--~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~  158 (183)
                      .+++.++  ++|||||++.+|..||||||+|+|.            ..+...+..++++.+|||||.+|.+|..+++.|.
T Consensus         3 ~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~------------~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~   70 (145)
T cd01535           3 AAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLR------------AQLAQALEKLPAAERYVLTCGSSLLARFAAADLA   70 (145)
T ss_pred             HHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCH------------HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHH
Confidence            4444444  7999999999999999999999998            5667777778788999999999999999999999


Q ss_pred             -cCCCCeeEccccHHHhhhCCCCCC
Q 030104          159 -NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       159 -~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                       .||++|++|+||+.+|..+|+|++
T Consensus        71 ~~G~~~v~~L~GG~~aW~~~g~pl~   95 (145)
T cd01535          71 ALTVKPVFVLEGGTAAWIAAGLPVE   95 (145)
T ss_pred             HcCCcCeEEecCcHHHHHHCCCCcc
Confidence             999999999999999999999986

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=2.4e-21  Score=138.89  Aligned_cols=91  Identities=27%  Similarity=0.386  Sum_probs=76.9

Q ss_pred             ccCHHHHHHHHhC-------CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHh------cCCCCCeE
Q 030104           74 SVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST------RFRKHDEI  140 (183)
Q Consensus        74 ~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~------~l~~~~~i  140 (183)
                      .|+++++.+++++       +++|||||++.||..||||||+|+|..           +.+.....      .++++++|
T Consensus         3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~v   71 (121)
T cd01530           3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRVL   71 (121)
T ss_pred             ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCEE
Confidence            5888999888865       378999999999999999999999983           12333221      25788999


Q ss_pred             EEEcC-CchHHHHHHHHHH-c------------CCCCeeEccccHHHhh
Q 030104          141 IVGCQ-SGKRSMMAATDLL-N------------GFAGITDIAGGFAAWR  175 (183)
Q Consensus       141 vv~c~-~g~~s~~a~~~L~-~------------G~~~v~~l~GG~~~W~  175 (183)
                      ||||. +|.||..+++.|+ .            ||.+|++|+||+.+|.
T Consensus        72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence            99997 9999999999999 7            9999999999999985

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.86  E-value=2.4e-21  Score=138.07  Aligned_cols=101  Identities=28%  Similarity=0.421  Sum_probs=82.8

Q ss_pred             cCHHHHHHHHhC--CCEEEEcCChhhHh-ccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHH
Q 030104           75 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (183)
Q Consensus        75 i~~~~~~~~~~~--~~~lIDvR~~~e~~-~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~  151 (183)
                      |+++++.+++++  +.+|||||++.||. .||||||+|+|+..+...  .....+..++...++++++||+||++|.+|.
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~   78 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI   78 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence            578889888876  48899999999999 999999999998643311  1123444554444578899999999999999


Q ss_pred             HHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104          152 MAATDLL-NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       152 ~a~~~L~-~G~~~v~~l~GG~~~W~~~  177 (183)
                      .++..|+ .||++++.|.||+.+|...
T Consensus        79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          79 AAAEAAAQAGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             HHHHHHHHCCCCeEEECcCceecCCCC
Confidence            9999999 9999999999999999764

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.85  E-value=6.5e-21  Score=130.03  Aligned_cols=95  Identities=34%  Similarity=0.554  Sum_probs=74.6

Q ss_pred             CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHH--HhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCC
Q 030104           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV--STRFRKHDEIIVGCQSGKRSMMAATDLL-NGFA  162 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~  162 (183)
                      ++++|||+|++.||..+|||||+|+|+..............+...  ...++++++|||||.+|.++..+++.|. .||+
T Consensus         3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~   82 (100)
T smart00450        3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK   82 (100)
T ss_pred             CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence            458999999999999999999999998644322111111111222  2235788999999999999999999999 9999


Q ss_pred             CeeEccccHHHhhhCCCC
Q 030104          163 GITDIAGGFAAWRQNGLP  180 (183)
Q Consensus       163 ~v~~l~GG~~~W~~~g~p  180 (183)
                      +|++|+||+.+|.+.+.|
T Consensus        83 ~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       83 NVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             ceEEecCCHHHHHhcCCC
Confidence            999999999999998764

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.85  E-value=3.5e-21  Score=132.28  Aligned_cols=85  Identities=25%  Similarity=0.398  Sum_probs=70.0

Q ss_pred             CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCe
Q 030104           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGI  164 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v  164 (183)
                      .+.+|||||++.+|..||||||+|+|+..+     ....+.++. +..++++++||+||++|.++..+++.|. .||++|
T Consensus        11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~-----~~~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v   84 (96)
T cd01529          11 PGTALLDVRAEDEYAAGHLPGKRSIPGAAL-----VLRSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLALGGKPV   84 (96)
T ss_pred             CCeEEEeCCCHHHHcCCCCCCcEeCCHHHh-----cCCHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCE
Confidence            458999999999999999999999997422     122233332 3345788999999999999999999999 999999


Q ss_pred             eEccccHHHhhh
Q 030104          165 TDIAGGFAAWRQ  176 (183)
Q Consensus       165 ~~l~GG~~~W~~  176 (183)
                      ++|+||+.+|.+
T Consensus        85 ~~l~GG~~~W~~   96 (96)
T cd01529          85 ALLDGGTSAWVA   96 (96)
T ss_pred             EEeCCCHHHhcC
Confidence            999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.85  E-value=6.9e-21  Score=154.74  Aligned_cols=138  Identities=20%  Similarity=0.321  Sum_probs=103.0

Q ss_pred             eEEccCCccccccccccCCcc---------ccC-CCCcccCHHHHHHHHhC-CCEEEEcCChhhHh-----------ccC
Q 030104           46 IGFISSKILSFCPKASLRGNL---------EAV-GVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS-----------AGH  103 (183)
Q Consensus        46 ~~~l~~~~~~~~~~~~~~~~~---------~~~-~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~-----------~gh  103 (183)
                      +.++++++.+|..........         ... ......+.+++...++. +++|||+|++.||.           .||
T Consensus       116 v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~Gh  195 (281)
T PRK11493        116 VSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGH  195 (281)
T ss_pred             EEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCccccc
Confidence            357889999997431110100         000 01123345555555544 48999999999995           699


Q ss_pred             CCCceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh-CCC
Q 030104          104 ATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ-NGL  179 (183)
Q Consensus       104 IpgAvnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~-~g~  179 (183)
                      ||||+|+|+.++...+.+.+.+.++..+..  ++++++||+||++|.+|..+++.|. +||++|++|+|||.+|.. .++
T Consensus       196 IpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~  275 (281)
T PRK11493        196 IPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADL  275 (281)
T ss_pred             CCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCC
Confidence            999999998766655556667777776654  6788999999999999999999999 999999999999999998 689


Q ss_pred             CCCC
Q 030104          180 PTEP  183 (183)
Q Consensus       180 pv~~  183 (183)
                      |+++
T Consensus       276 P~~~  279 (281)
T PRK11493        276 PVEP  279 (281)
T ss_pred             CcCC
Confidence            9874

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.85  E-value=9.6e-21  Score=132.62  Aligned_cols=102  Identities=31%  Similarity=0.540  Sum_probs=77.7

Q ss_pred             CHHHHHHHHh-CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHH----HHHHHhcCCCCCeEEEEcCCchHH
Q 030104           76 PVRVAHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF----VEEVSTRFRKHDEIIVGCQSGKRS  150 (183)
Q Consensus        76 ~~~~~~~~~~-~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~----~~~~~~~l~~~~~ivv~c~~g~~s  150 (183)
                      |++++++++. ++++|||||++.+|..||||||+|+|+............+.    .......++++++||+||.+|.++
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~   80 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS   80 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence            5788888883 44999999999999999999999999954422222222222    233334467888999999988887


Q ss_pred             HHHHHH-----HH-cCCCCeeEccccHHHhhhC
Q 030104          151 MMAATD-----LL-NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       151 ~~a~~~-----L~-~G~~~v~~l~GG~~~W~~~  177 (183)
                      ..++..     |. +||++|++|+||+.+|.++
T Consensus        81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~  113 (113)
T PF00581_consen   81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE  113 (113)
T ss_dssp             HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence            766665     88 9999999999999999863

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>PRK07411 hypothetical protein; Validated

Probab=99.84  E-value=2.8e-20  Score=157.28  Aligned_cols=151  Identities=25%  Similarity=0.351  Sum_probs=110.8

Q ss_pred             eecCCCCCccceeccccCCCccceeEEccCCccccccccccCCc-cccCCCCcccCHHHHHHHHhCC---CEEEEcCChh
Q 030104           22 VLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGN-LEAVGVPTSVPVRVAHELLQAG---HRYLDVRTPE   97 (183)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~---~~lIDvR~~~   97 (183)
                      ++|-...+|+ ..++.++|.|+.+..+.  .|..+|...+.... .........++++++.++++.+   ++|||||++.
T Consensus       233 ~~d~~~~~~~-~~~~~~~~~c~~i~~~~--~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~  309 (390)
T PRK07411        233 LYNALDMKFR-ELKLRPNPERPVIEKLI--DYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPN  309 (390)
T ss_pred             EEECCCCcee-EEeccCCCCCCcccccc--chhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHH
Confidence            3687777777 45566788888766655  66666643221111 1123455789999999988643   6899999999


Q ss_pred             hHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh
Q 030104           98 EFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus        98 e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~  176 (183)
                      ||..||||||+|+|+.++...      ... .....++++++||+||.+|.||..+++.|+ .||++ +.|+||+.+|.+
T Consensus       310 E~~~ghIpGAiniP~~~l~~~------~~~-~~l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~  381 (390)
T PRK07411        310 EYEIARIPGSVLVPLPDIENG------PGV-EKVKELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSR  381 (390)
T ss_pred             HhccCcCCCCEEccHHHhhcc------cch-HHHhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHH
Confidence            999999999999998532111      001 123345678999999999999999999999 99975 579999999999


Q ss_pred             CCCCCCC
Q 030104          177 NGLPTEP  183 (183)
Q Consensus       177 ~g~pv~~  183 (183)
                      +..|..|
T Consensus       382 ~~~p~~p  388 (390)
T PRK07411        382 EVDPSVP  388 (390)
T ss_pred             hcCCCCC
Confidence            8877654

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.84  E-value=2.4e-20  Score=154.09  Aligned_cols=109  Identities=17%  Similarity=0.295  Sum_probs=91.6

Q ss_pred             cCHHHHHHHHhC-CCEEEEcCChhhH-----------hccCCCCceecCcccccC-CCCCCCHHHHHHHHhc--CCCCCe
Q 030104           75 VPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDE  139 (183)
Q Consensus        75 i~~~~~~~~~~~-~~~lIDvR~~~e~-----------~~ghIpgAvnip~~~~~~-~~~~~~~~~~~~~~~~--l~~~~~  139 (183)
                      ++.+++.+.++. +.+|||+|++.+|           ..||||||+|+|+..++. .+.+.+.+.++..+..  ++++++
T Consensus       192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~  271 (320)
T PLN02723        192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP  271 (320)
T ss_pred             ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence            577888877755 4889999999988           469999999999975543 3456777888887764  688899


Q ss_pred             EEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhC-CCCCCC
Q 030104          140 IIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQN-GLPTEP  183 (183)
Q Consensus       140 ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~-g~pv~~  183 (183)
                      ||+||++|.+|..+++.|+ +||++|++|+|||.+|... ..|+++
T Consensus       272 iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~  317 (320)
T PLN02723        272 IVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT  317 (320)
T ss_pred             EEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence            9999999999999999999 9999999999999999876 677753

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.84  E-value=2.5e-20  Score=157.09  Aligned_cols=98  Identities=35%  Similarity=0.596  Sum_probs=87.0

Q ss_pred             cccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHH
Q 030104           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRS  150 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s  150 (183)
                      ..++++++.++++++.+|||||++.||..||||||+|+|+            ..+......  .+++++||+||++|.+|
T Consensus         3 ~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~------------~~l~~~~~~~~~~~~~~IvvyC~~G~rs   70 (376)
T PRK08762          3 REISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPR------------GFLELRIETHLPDRDREIVLICASGTRS   70 (376)
T ss_pred             ceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCH------------HHHHHHHhhhcCCCCCeEEEEcCCCcHH
Confidence            5688999999988889999999999999999999999998            344443333  26789999999999999


Q ss_pred             HHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          151 MMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       151 ~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ..+++.|+ .||++|++|+||+.+|.+.|+|++
T Consensus        71 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  103 (376)
T PRK08762         71 AHAAATLRELGYTRVASVAGGFSAWKDAGLPLE  103 (376)
T ss_pred             HHHHHHHHHcCCCceEeecCcHHHHHhcCCccc
Confidence            99999999 999999999999999999999986

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.83  E-value=3.4e-20  Score=135.78  Aligned_cols=101  Identities=20%  Similarity=0.259  Sum_probs=82.2

Q ss_pred             cCHHHHHHHHh-----CCCEEEEcCCh--------hhHhc------------cCCCCceecCcccccCC-----CCCCCH
Q 030104           75 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVGS-----GMTKNL  124 (183)
Q Consensus        75 i~~~~~~~~~~-----~~~~lIDvR~~--------~e~~~------------ghIpgAvnip~~~~~~~-----~~~~~~  124 (183)
                      ++++++.+.++     .+++|||+|..        .+|..            ||||||+|+|+..+...     ....+.
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~   80 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE   80 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence            46788888876     34899999987        88987            99999999998644321     234445


Q ss_pred             HHHHHHHhc--CCCCCeEEEEcCC---chHHHHHHHHHH-cCCCCeeEccccHHHhh
Q 030104          125 KFVEEVSTR--FRKHDEIIVGCQS---GKRSMMAATDLL-NGFAGITDIAGGFAAWR  175 (183)
Q Consensus       125 ~~~~~~~~~--l~~~~~ivv~c~~---g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~  175 (183)
                      +.++..+..  ++++++||+||++   |..+.++++.|+ +|+++|++|+||+.+|.
T Consensus        81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~  137 (138)
T cd01445          81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF  137 (138)
T ss_pred             HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence            567776665  6788999999986   778999999999 99999999999999996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.83  E-value=2.9e-20  Score=126.93  Aligned_cols=79  Identities=27%  Similarity=0.453  Sum_probs=65.9

Q ss_pred             CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHH-HHHhcCC-CCCeEEEEcCCchH--HHHHHHHHH-cC
Q 030104           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFR-KHDEIIVGCQSGKR--SMMAATDLL-NG  160 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~-~~~~~l~-~~~~ivv~c~~g~~--s~~a~~~L~-~G  160 (183)
                      ++++|||+|++.||..+|||||+|+|..            .+. .....++ ++++|||||.+|.+  |..+++.|. .|
T Consensus         9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G   76 (92)
T cd01532           9 EEIALIDVREEDPFAQSHPLWAANLPLS------------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELG   76 (92)
T ss_pred             CCeEEEECCCHHHHhhCCcccCeeCCHH------------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence            4489999999999999999999999983            222 1222233 48899999999986  679999999 99


Q ss_pred             CCCeeEccccHHHhhh
Q 030104          161 FAGITDIAGGFAAWRQ  176 (183)
Q Consensus       161 ~~~v~~l~GG~~~W~~  176 (183)
                      |++|++|+||+.+|.+
T Consensus        77 ~~~v~~l~GG~~~W~~   92 (92)
T cd01532          77 YTDVALLEGGLQGWRA   92 (92)
T ss_pred             ccCEEEccCCHHHHcC
Confidence            9999999999999974

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.83  E-value=7.8e-20  Score=148.55  Aligned_cols=110  Identities=20%  Similarity=0.221  Sum_probs=90.8

Q ss_pred             cccCHHHHHHHHhCC-CEEEEcCC----------hhhHhccCCCCceecCcccccCC-----CCCCCHHHHHHHHhc--C
Q 030104           73 TSVPVRVAHELLQAG-HRYLDVRT----------PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F  134 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~lIDvR~----------~~e~~~ghIpgAvnip~~~~~~~-----~~~~~~~~~~~~~~~--l  134 (183)
                      ..++++++.+.++++ ++|||+|+          +.+|..||||||+|+|+......     .+....+.++..+..  +
T Consensus         5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi   84 (281)
T PRK11493          5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV   84 (281)
T ss_pred             cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            468899999888764 89999996          68899999999999998643321     234456677777766  5


Q ss_pred             CCCCeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          135 RKHDEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       135 ~~~~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +++++|||||.++. .+.++++.|. .||++|++|+||+.+|.++|+|++
T Consensus        85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~  134 (281)
T PRK11493         85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLE  134 (281)
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCcc
Confidence            78999999999876 4668889999 999999999999999999999876

>PRK01415 hypothetical protein; Validated

Probab=99.82  E-value=7.2e-20  Score=145.19  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=83.7

Q ss_pred             CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (183)
                      .....|+++++.++++++ ++|||||++.||..||||||+|+|...+.     +.+..+. ....++++++|++||.+|.
T Consensus       109 ~~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~-----e~~~~~~-~~~~~~k~k~Iv~yCtgGi  182 (247)
T PRK01415        109 FKGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFK-----QFPAWVQ-QNQELLKGKKIAMVCTGGI  182 (247)
T ss_pred             cCccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHh-----hhHHHHh-hhhhhcCCCeEEEECCCCh
Confidence            356789999999988754 89999999999999999999999984110     0011111 1234578899999999999


Q ss_pred             HHHHHHHHHH-cCCCCeeEccccHHHhhhCC
Q 030104          149 RSMMAATDLL-NGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g  178 (183)
                      ||..++..|+ .||++|+.|.||+.+|.++.
T Consensus       183 Rs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~  213 (247)
T PRK01415        183 RCEKSTSLLKSIGYDEVYHLKGGILQYLEDT  213 (247)
T ss_pred             HHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence            9999999999 99999999999999998753

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.82  E-value=1.1e-19  Score=146.68  Aligned_cols=140  Identities=23%  Similarity=0.375  Sum_probs=109.0

Q ss_pred             ceeEEccCCccccccccccCCccc----c------CCCCcccCHHHHHHHHhCC-CEEEEcCChhhHhc----------c
Q 030104           44 DNIGFISSKILSFCPKASLRGNLE----A------VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSA----------G  102 (183)
Q Consensus        44 ~~~~~l~~~~~~~~~~~~~~~~~~----~------~~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~----------g  102 (183)
                      .-+.+|++++.+|...........    .      -.....++..+++...+.. .+|||+|++.+|..          |
T Consensus       117 ~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~G  196 (285)
T COG2897         117 ENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAG  196 (285)
T ss_pred             CceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCC
Confidence            446789999999986543333110    0      1122345566677766655 77899999999998          9


Q ss_pred             CCCCceecCcccccC-CCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhC-
Q 030104          103 HATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQN-  177 (183)
Q Consensus       103 hIpgAvnip~~~~~~-~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~-  177 (183)
                      |||||+|+|+...+. ..+.+..+.++.+.+.  ++.+++||+||.+|.+|+..+..|+ +|+.++++|+|+|.+|.+. 
T Consensus       197 HIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~  276 (285)
T COG2897         197 HIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDP  276 (285)
T ss_pred             CCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCC
Confidence            999999999987775 4566777788877744  8999999999999999999999999 8888889999999999886 


Q ss_pred             CCCCCC
Q 030104          178 GLPTEP  183 (183)
Q Consensus       178 g~pv~~  183 (183)
                      +.||++
T Consensus       277 ~~PV~~  282 (285)
T COG2897         277 DRPVET  282 (285)
T ss_pred             CCcccc
Confidence            557763

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.82  E-value=1.2e-19  Score=160.78  Aligned_cols=110  Identities=21%  Similarity=0.216  Sum_probs=93.0

Q ss_pred             cccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCccccc-----CCCCCCCHHHHHHHHhc--CCCCCeEEEEc
Q 030104           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRKHDEIIVGC  144 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~-----~~~~~~~~~~~~~~~~~--l~~~~~ivv~c  144 (183)
                      ..|++++++++++++ ++|||+|++.+|..||||||+|++++...     ..+.+.+.+.++..+..  ++++++|||||
T Consensus         9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd   88 (610)
T PRK09629          9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD   88 (610)
T ss_pred             ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence            569999999998765 89999999999999999999999975322     12345556667777666  57889999999


Q ss_pred             CCc-hHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          145 QSG-KRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       145 ~~g-~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ++| .++.+++|.|+ +|+++|++|+||+.+|..+|+|++
T Consensus        89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~  128 (610)
T PRK09629         89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLS  128 (610)
T ss_pred             CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccc
Confidence            977 47889999999 999999999999999999999875

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.81  E-value=9.6e-20  Score=145.99  Aligned_cols=102  Identities=19%  Similarity=0.245  Sum_probs=81.9

Q ss_pred             CCCcccCHHHHHHHHhC-------CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEE
Q 030104           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIV  142 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv  142 (183)
                      .....++++++.+++++       +.+|||||++.||+.||||||+|+|+..+.     .....+......+ ++++||+
T Consensus       107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~-----~~~~~l~~~~~~~-kdk~Ivv  180 (257)
T PRK05320        107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFT-----EFPEALAAHRADL-AGKTVVS  180 (257)
T ss_pred             CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhh-----hhHHHHHhhhhhc-CCCeEEE
Confidence            45568999999888765       278999999999999999999999984211     1111222222233 7889999


Q ss_pred             EcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104          143 GCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       143 ~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~  177 (183)
                      ||++|.||..++..|+ .||++|++|.||+.+|.++
T Consensus       181 yC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        181 FCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             ECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence            9999999999999999 9999999999999999875

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.81  E-value=2.3e-19  Score=148.23  Aligned_cols=112  Identities=19%  Similarity=0.222  Sum_probs=90.5

Q ss_pred             CcccCHHHHHHHHhCC-CEEEEcC--------C-hhhHhccCCCCceecCcccccCC-----CCCCCHHHHHHHHhc--C
Q 030104           72 PTSVPVRVAHELLQAG-HRYLDVR--------T-PEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--F  134 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~lIDvR--------~-~~e~~~ghIpgAvnip~~~~~~~-----~~~~~~~~~~~~~~~--l  134 (183)
                      ...|++++++++++++ ++|||+|        + ..+|..||||||+|+++..+...     .+..+.+.+...+..  +
T Consensus        21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi  100 (320)
T PLN02723         21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGI  100 (320)
T ss_pred             CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCC
Confidence            3579999999988654 8899996        3 37899999999999997643321     334455667777766  5


Q ss_pred             CCCCeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          135 RKHDEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       135 ~~~~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .++++|||||++|. .+.++++.|+ +||++|++|+||+.+|.++|+|+++
T Consensus       101 ~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~  151 (320)
T PLN02723        101 ENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVES  151 (320)
T ss_pred             CCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCccc
Confidence            68899999999886 4568889999 9999999999999999999999863

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.81  E-value=1.1e-19  Score=121.92  Aligned_cols=80  Identities=40%  Similarity=0.673  Sum_probs=68.8

Q ss_pred             hCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHH-HHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCC
Q 030104           85 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFA  162 (183)
Q Consensus        85 ~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~  162 (183)
                      +.+.+|||+|++.+|..+|||||+|+|+.           ..... ....++++++|||||.+|.++..+++.|+ .||+
T Consensus         8 ~~~~~iiD~R~~~~~~~~~i~ga~~~~~~-----------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~   76 (89)
T cd00158           8 DEDAVLLDVREPEEYAAGHIPGAINIPLS-----------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGT   76 (89)
T ss_pred             CCCeEEEECCCHHHHhccccCCCEecchH-----------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHHHhCcc
Confidence            34589999999999999999999999984           11111 24456788999999999999999999999 9999


Q ss_pred             CeeEccccHHHhh
Q 030104          163 GITDIAGGFAAWR  175 (183)
Q Consensus       163 ~v~~l~GG~~~W~  175 (183)
                      ++++|+||+.+|.
T Consensus        77 ~v~~l~gG~~~w~   89 (89)
T cd00158          77 NVYNLEGGMLAWK   89 (89)
T ss_pred             cEEEecCChhhcC
Confidence            9999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.6e-19  Score=126.29  Aligned_cols=86  Identities=40%  Similarity=0.699  Sum_probs=74.7

Q ss_pred             CCCEEEEcCChhhHhccCCCC-ceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCC
Q 030104           86 AGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGF  161 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpg-Avnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~  161 (183)
                      .+.++||||++.||..+|||| ++|+|..+            +......  ++++++|||||.+|.||..++..|+ .||
T Consensus        19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~------------~~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~   86 (110)
T COG0607          19 EDAVLLDVREPEEYERGHIPGAAINIPLSE------------LKAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAGF   86 (110)
T ss_pred             CCCEEEeccChhHhhhcCCCcceeeeeccc------------chhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcCC
Confidence            359999999999999999999 99999952            2222222  4789999999999999999999999 999


Q ss_pred             CCeeEccccHHHhhhCCCCCCC
Q 030104          162 AGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       162 ~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +++++++||+.+|..+++|+++
T Consensus        87 ~~~~~l~gG~~~w~~~~~~~~~  108 (110)
T COG0607          87 TNVYNLDGGIDAWKGAGLPLVR  108 (110)
T ss_pred             ccccccCCcHHHHHhcCCCccc
Confidence            9888999999999999998763

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.81  E-value=3e-19  Score=158.13  Aligned_cols=138  Identities=20%  Similarity=0.331  Sum_probs=105.7

Q ss_pred             eeEEccCCccccccccccCC-ccc---------cCCCCcccCHHHHHHHHhC-CCEEEEcCChhhHh--------ccCCC
Q 030104           45 NIGFISSKILSFCPKASLRG-NLE---------AVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHAT  105 (183)
Q Consensus        45 ~~~~l~~~~~~~~~~~~~~~-~~~---------~~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~--------~ghIp  105 (183)
                      -+.++++++.+|........ ...         .......++.+++++.+++ +++|||+|++.||.        .||||
T Consensus       109 ~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIP  188 (610)
T PRK09629        109 GYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIP  188 (610)
T ss_pred             CEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCC
Confidence            45679999999975432111 000         0111225678888887765 47899999999995        69999


Q ss_pred             CceecCccccc-CCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhC-CCC
Q 030104          106 GAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQN-GLP  180 (183)
Q Consensus       106 gAvnip~~~~~-~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~-g~p  180 (183)
                      ||+|+|+...+ ..+...+.+.+++++..  ++++++||+||++|.+|..+++.|+ +||++|++|+|||.+|... +.|
T Consensus       189 GAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lP  268 (610)
T PRK09629        189 GAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTP  268 (610)
T ss_pred             CCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCc
Confidence            99999986544 23445667778877765  6788999999999999999999999 9999999999999999875 678


Q ss_pred             CC
Q 030104          181 TE  182 (183)
Q Consensus       181 v~  182 (183)
                      ++
T Consensus       269 v~  270 (610)
T PRK09629        269 VE  270 (610)
T ss_pred             cc
Confidence            76

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.79  E-value=2.7e-19  Score=126.49  Aligned_cols=96  Identities=22%  Similarity=0.382  Sum_probs=73.6

Q ss_pred             cccCHHHHHHHHhCC---CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcC-C
Q 030104           73 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQ-S  146 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~-~  146 (183)
                      ..|+++++.+++..+   .+|||||++ ||..||||||+|+|+..+.        ..+.+....  ++++++|||||. +
T Consensus         2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~~~   72 (113)
T cd01531           2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCALS   72 (113)
T ss_pred             CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEeecC
Confidence            467889999988653   689999999 9999999999999985211        112222222  256789999998 6


Q ss_pred             chHHHHHHHHHH-c--------CCCCeeEccccHHHhhhC
Q 030104          147 GKRSMMAATDLL-N--------GFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       147 g~~s~~a~~~L~-~--------G~~~v~~l~GG~~~W~~~  177 (183)
                      |.|+..++..|. .        |+.+|++|+||+.+|.+.
T Consensus        73 ~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          73 QVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             CcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence            678887777664 1        999999999999999864

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.79  E-value=6e-19  Score=122.49  Aligned_cols=78  Identities=32%  Similarity=0.549  Sum_probs=66.3

Q ss_pred             CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCCC
Q 030104           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGFA  162 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~  162 (183)
                      ....+||+|++.||..||||||+|+|+.            .+......  .+++++|||||++|.+|..++..|. .||+
T Consensus        17 ~~~~lIDvR~~~ef~~ghIpgAinip~~------------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~   84 (101)
T TIGR02981        17 AAEHWIDVRIPEQYQQEHIQGAINIPLK------------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT   84 (101)
T ss_pred             cCCEEEECCCHHHHhcCCCCCCEECCHH------------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence            3478999999999999999999999983            34433433  2467799999999999999999999 9999


Q ss_pred             CeeEccccHHHhhh
Q 030104          163 GITDIAGGFAAWRQ  176 (183)
Q Consensus       163 ~v~~l~GG~~~W~~  176 (183)
                      +++++ ||+.+|..
T Consensus        85 ~v~~~-GG~~~~~~   97 (101)
T TIGR02981        85 HAENA-GGIKDIAM   97 (101)
T ss_pred             eEEec-CCHHHhhh
Confidence            99985 99999975

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.79  E-value=5.2e-19  Score=123.37  Aligned_cols=77  Identities=31%  Similarity=0.529  Sum_probs=65.8

Q ss_pred             CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcCCchHHHHHHHHHH-cCCCC
Q 030104           87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLL-NGFAG  163 (183)
Q Consensus        87 ~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~  163 (183)
                      +-++||+|++.||..||||||+|+|+.            .+......+  +++++||+||++|.+|..++..|. .||++
T Consensus        20 ~~~lIDvR~~~ef~~ghIpGAiniP~~------------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~   87 (104)
T PRK10287         20 AEHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH   87 (104)
T ss_pred             CCEEEECCCHHHHhcCCCCccEECCHH------------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence            357999999999999999999999983            344444443  456789999999999999999999 99999


Q ss_pred             eeEccccHHHhhh
Q 030104          164 ITDIAGGFAAWRQ  176 (183)
Q Consensus       164 v~~l~GG~~~W~~  176 (183)
                      |++ .||+.+|..
T Consensus        88 v~~-~GG~~~~~~   99 (104)
T PRK10287         88 AEN-AGGLKDIAM   99 (104)
T ss_pred             EEe-cCCHHHHhh
Confidence            987 699999975

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.79  E-value=5.7e-19  Score=145.26  Aligned_cols=102  Identities=24%  Similarity=0.345  Sum_probs=82.1

Q ss_pred             CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (183)
                      .....++++++.++++++ ++|||||++.||..||||||+|+|+..+.     .....+.... .+.++++||+||.+|.
T Consensus       109 ~~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~-----~~~~~l~~~~-~~~kdk~IvvyC~~G~  182 (314)
T PRK00142        109 NVGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR-----EFPPWVEENL-DPLKDKKVVMYCTGGI  182 (314)
T ss_pred             cCCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhh-----hhHHHHHHhc-CCCCcCeEEEECCCCc
Confidence            345678999998888665 89999999999999999999999985211     1111121211 2357899999999999


Q ss_pred             HHHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104          149 RSMMAATDLL-NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~  177 (183)
                      |+..++..|. .||++|++|+||+.+|.+.
T Consensus       183 Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~  212 (314)
T PRK00142        183 RCEKASAWMKHEGFKEVYQLEGGIITYGED  212 (314)
T ss_pred             HHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence            9999999999 9999999999999999874

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.78  E-value=3.2e-19  Score=144.74  Aligned_cols=173  Identities=21%  Similarity=0.254  Sum_probs=129.9

Q ss_pred             CCccccchhhhccc--CCCCCCceecCCCCCccceeccccCCCcc------ceeEEccCCccccccccccCC-ccccCCC
Q 030104            1 MEATSLISLSSFAA--GASSLPPVLCPHGNNRRGLLSLTVDQQRC------DNIGFISSKILSFCPKASLRG-NLEAVGV   71 (183)
Q Consensus         1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~-~~~~~~~   71 (183)
                      |.|++.+++.+.-.  +++ -.-+||+.++.||.++.+.|.+.|.      .++..+  +|..||....... .+...+.
T Consensus       239 mQALE~iKli~~~~~~~s~-~lllfdg~~~~~r~irlR~r~~~C~~Cg~n~tit~~~--dYe~fCg~~~~~~~~l~lL~~  315 (427)
T KOG2017|consen  239 MQALETIKLIAGIGESLSG-RLLLFDGLSGHFRTIRLRSRRPKCAVCGKNPTITSLI--DYELFCGSSATDKCPLKLLEP  315 (427)
T ss_pred             HHHHHHHHHHHccCccCCc-ceEEEecccceeEEEEeccCCCCCcccCCCCccCccc--chhcccCCccccccchhcCCh
Confidence            34556666665533  222 2347999999999999999999985      555544  8999996444333 4456677


Q ss_pred             CcccCHHHHHHHHhCC--CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC-CCCCeEEEEcCCch
Q 030104           72 PTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVGCQSGK  148 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ivv~c~~g~  148 (183)
                      ...|+..+++++++++  +++||||++.||+..|+|+|+|||+.+.....      - ++....+ ...++|+|+|+.|+
T Consensus       316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~------~-~~~~~~~~~~~~~I~ViCrrGN  388 (427)
T KOG2017|consen  316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRS------G-KKLQGDLNTESKDIFVICRRGN  388 (427)
T ss_pred             hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhh------h-hhhcccccccCCCEEEEeCCCC
Confidence            8899999999999875  99999999999999999999999994221110      0 2222223 24578999999999


Q ss_pred             HHHHHHHHHH--cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          149 RSMMAATDLL--NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       149 ~s~~a~~~L~--~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .|+++++.|+  ...-.|+.+.||+.+|..+-.|.+|
T Consensus       389 dSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~fP  425 (427)
T KOG2017|consen  389 DSQRAVRILREKFPDSSVRDVIGGLKAWAAKVDPNFP  425 (427)
T ss_pred             chHHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcCCC
Confidence            9999999999  4555788999999999998777654

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.78  E-value=2.2e-18  Score=144.17  Aligned_cols=129  Identities=25%  Similarity=0.394  Sum_probs=94.8

Q ss_pred             ecCCCCCccceeccccCCCccceeEEccCCccccccccccCCccccCCCCcccCHHHHHHHHhCCCEEEEcCChhhHhcc
Q 030104           23 LCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAG  102 (183)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~g  102 (183)
                      +|-...+|+ ..++.++|.|........|    .+      + . ..+....++.+++.++ .++.+|||||++.||..+
T Consensus       224 ~d~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~------~-~-~~~~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~g  289 (355)
T PRK05597        224 YDSLDGTWE-YIPVVGNPAVLERVRGSTP----VH------G-I-SGGFGEVLDVPRVSAL-PDGVTLIDVREPSEFAAY  289 (355)
T ss_pred             EECCCCeEE-EEeccCCCCCccccccccc----cc------c-c-cCCcccccCHHHHHhc-cCCCEEEECCCHHHHccC
Confidence            677777777 4466677877432211111    11      0 0 1244567888888854 456899999999999999


Q ss_pred             CCCCceecCcccccCCCCCCCHHHHHHH-HhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh
Q 030104          103 HATGAINVPYMYRVGSGMTKNLKFVEEV-STRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus       103 hIpgAvnip~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~  176 (183)
                      |||||+|+|+.+.           .... ...++++++||+||++|.+|..+++.|+ .||++|++|+||+.+|.+
T Consensus       290 hIpgAinip~~~l-----------~~~~~~~~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~  354 (355)
T PRK05597        290 SIPGAHNVPLSAI-----------REGANPPSVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD  354 (355)
T ss_pred             cCCCCEEeCHHHh-----------hhccccccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence            9999999998421           1111 1235678899999999999999999999 999999999999999975

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.77  E-value=8.9e-19  Score=123.88  Aligned_cols=94  Identities=24%  Similarity=0.318  Sum_probs=70.0

Q ss_pred             cccCHHHHHHHHhCC-------CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC--CCCCeEEEE
Q 030104           73 TSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVG  143 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~  143 (183)
                      ..+++++++++++++       .+|||||++ ||..||||||+|+|+..+.        +.+.+....+  .+.++||+|
T Consensus         2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~--------~~~~~~~~~~~~~~~~~iv~~   72 (113)
T cd01443           2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCY--------QTLPQVYALFSLAGVKLAIFY   72 (113)
T ss_pred             cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHH--------HHHHHHHHHhhhcCCCEEEEE
Confidence            357889999988764       789999999 9999999999999984211        1122222222  345789999


Q ss_pred             cCC-chHHHHHHHHHH-----cCC--CCeeEccccHHHhh
Q 030104          144 CQS-GKRSMMAATDLL-----NGF--AGITDIAGGFAAWR  175 (183)
Q Consensus       144 c~~-g~~s~~a~~~L~-----~G~--~~v~~l~GG~~~W~  175 (183)
                      |.+ |.||..++..+.     .||  .++++|+||+.+|.
T Consensus        73 C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          73 CGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             CCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            996 578777665543     465  68999999999996

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.74  E-value=1.7e-17  Score=134.01  Aligned_cols=114  Identities=23%  Similarity=0.286  Sum_probs=94.8

Q ss_pred             CCCcccCHHHHHHHHhC------CCEEEEcCCh--hhHhccCCCCceecCcccccC-----CCCCCCHHHHHHHHhc--C
Q 030104           70 GVPTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--F  134 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~------~~~lIDvR~~--~e~~~ghIpgAvnip~~~~~~-----~~~~~~~~~~~~~~~~--l  134 (183)
                      .....|+++.+.+.+++      +..+++++..  .+|..+|||||+++++.....     .+++.+++.++.++..  |
T Consensus         8 ~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI   87 (285)
T COG2897           8 SSEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGI   87 (285)
T ss_pred             CcceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            34567899999888764      3566666665  899999999999999976552     4677788888888776  7


Q ss_pred             CCCCeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          135 RKHDEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       135 ~~~~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ..+++||+|.+.+. .+.+++|.|+ +|+++|++|+||+.+|.++|+|++.
T Consensus        88 ~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~  138 (285)
T COG2897          88 RNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLET  138 (285)
T ss_pred             CCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccC
Confidence            88999999998665 6789999999 9999999999999999999999873

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.73  E-value=1.2e-17  Score=138.91  Aligned_cols=102  Identities=27%  Similarity=0.420  Sum_probs=76.4

Q ss_pred             HHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCC----------C---------CCCC---HHHHHHHHhcC
Q 030104           77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------G---------MTKN---LKFVEEVSTRF  134 (183)
Q Consensus        77 ~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~----------~---------~~~~---~~~~~~~~~~l  134 (183)
                      ..++.+++.++.+|||||++.||..||||||+|+|+......          +         ....   .+.+.+.+..+
T Consensus         5 ~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~~   84 (345)
T PRK11784          5 AQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWADF   84 (345)
T ss_pred             HHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHhc
Confidence            456777777789999999999999999999999999532110          0         0001   11122222233


Q ss_pred             C-CCCeEEEEcC-CchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCC
Q 030104          135 R-KHDEIIVGCQ-SGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGL  179 (183)
Q Consensus       135 ~-~~~~ivv~c~-~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~  179 (183)
                      + ++++|||||. +|.||..+++.|. .|| ++++|+||+.+|...+.
T Consensus        85 ~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~  131 (345)
T PRK11784         85 PRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVI  131 (345)
T ss_pred             ccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhH
Confidence            3 7889999995 7899999999999 999 69999999999987654

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.72  E-value=2.3e-17  Score=138.65  Aligned_cols=124  Identities=16%  Similarity=0.192  Sum_probs=90.3

Q ss_pred             ecCCCCCccceeccccCCCccceeEEccCCccccccccccCCccccCCCCcccCHHHHHHHHhCC-CEEEEcCChhhHhc
Q 030104           23 LCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSA  101 (183)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~  101 (183)
                      +|....+|+ ..++.++|.|+.+.. ..+.|..                 ..++++++.++++++ .++||||++.||..
T Consensus       240 ~d~~~~~~~-~~~~~~~~~c~~~~~-~~~~~~~-----------------~~~~~~el~~~l~~~~~~lIDVR~~~E~~~  300 (370)
T PRK05600        240 YDALTATTR-SFRVGADPARPLVTR-LRPSYEA-----------------ARTDTTSLIDATLNGSATLLDVREPHEVLL  300 (370)
T ss_pred             EECCCCEEE-EEEecCCCCCCcccc-ccCcchh-----------------cccCHHHHHHHHhcCCeEEEECCCHHHhhh
Confidence            677777774 666677788765332 2233332                 278899998888765 78999999999999


Q ss_pred             cCCC---CceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCC-eeEccccHH
Q 030104          102 GHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAG-ITDIAGGFA  172 (183)
Q Consensus       102 ghIp---gAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~-v~~l~GG~~  172 (183)
                      ||||   ||+|||+..+..     ..++ ......++++ +|||||.+|.||..++..|+ .||++ |++|.||+.
T Consensus       301 ghI~~~~gAinIPl~~l~~-----~~~~-~~~l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~  369 (370)
T PRK05600        301 KDLPEGGASLKLPLSAITD-----DADI-LHALSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN  369 (370)
T ss_pred             ccCCCCCccEeCcHHHhhc-----chhh-hhhccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence            9998   599999842110     0000 1122334454 89999999999999999999 99986 999999975

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.72  E-value=1.6e-17  Score=136.41  Aligned_cols=94  Identities=30%  Similarity=0.435  Sum_probs=69.9

Q ss_pred             CCEEEEcCChhhHhccCCCCceecCcccccCC---C-CC------------------CCHHHHHHHHhcCCCCCeEEEEc
Q 030104           87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS---G-MT------------------KNLKFVEEVSTRFRKHDEIIVGC  144 (183)
Q Consensus        87 ~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~---~-~~------------------~~~~~~~~~~~~l~~~~~ivv~c  144 (183)
                      ..+|||||++.||..||||||+|||+......   + ..                  .-.+.+.++....+++++|||||
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC   81 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC   81 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence            35899999999999999999999999422110   0 00                  01122333333345566799999


Q ss_pred             C-CchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCC
Q 030104          145 Q-SGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       145 ~-~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      . +|.||..++++|. .|| +|++|+||+.+|...+.+.
T Consensus        82 ~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~  119 (311)
T TIGR03167        82 WRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQ  119 (311)
T ss_pred             CCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhh
Confidence            5 7899999999999 999 6999999999998876543

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.69  E-value=1.4e-16  Score=115.57  Aligned_cols=101  Identities=20%  Similarity=0.181  Sum_probs=71.3

Q ss_pred             cCHHHHHHHHhC---CCEEEEcCChhhHhccCCCCceecCcccccCCC----------CCCCHHHHHHHHhcCCCCCeEE
Q 030104           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----------MTKNLKFVEEVSTRFRKHDEII  141 (183)
Q Consensus        75 i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~iv  141 (183)
                      |+++++.++++.   +.+|||||+..+|..||||||+|+|+.......          +....+.... +... ++++||
T Consensus         2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~-~~~~VV   79 (132)
T cd01446           2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDR-LRRG-ESLAVV   79 (132)
T ss_pred             cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHH-HhcC-CCCeEE
Confidence            688899988864   489999999999999999999999986432111          1112222222 2222 578999


Q ss_pred             EEcCCchH---------HHHHHHHHH-c--CCCCeeEccccHHHhhhC
Q 030104          142 VGCQSGKR---------SMMAATDLL-N--GFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       142 v~c~~g~~---------s~~a~~~L~-~--G~~~v~~l~GG~~~W~~~  177 (183)
                      |||.++.+         +..++..|. .  |+.+|++|+||+.+|.+.
T Consensus        80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~  127 (132)
T cd01446          80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE  127 (132)
T ss_pred             EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence            99998764         334444444 3  568999999999999763

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.59  E-value=1.5e-15  Score=121.47  Aligned_cols=102  Identities=25%  Similarity=0.353  Sum_probs=85.2

Q ss_pred             CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (183)
                      .....++++++.+++.++ .++||+|+..||+.||..||++.+..     .+.+.++.+++..+.+ ++++|+.||.+|.
T Consensus       110 ~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~-----tFrefP~~v~~~~~~~-~~KkVvmyCTGGI  183 (308)
T COG1054         110 NVGTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIE-----TFREFPAWVEENLDLL-KDKKVVMYCTGGI  183 (308)
T ss_pred             cccCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChh-----hhhhhHHHHHHHHHhc-cCCcEEEEcCCce
Confidence            446789999999988765 99999999999999999999999984     2233344555544444 5679999999999


Q ss_pred             HHHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104          149 RSMMAATDLL-NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~  177 (183)
                      |..++..+|. .||++|+.|+||+-.|.++
T Consensus       184 RCEKas~~m~~~GF~eVyhL~GGIl~Y~e~  213 (308)
T COG1054         184 RCEKASAWMKENGFKEVYHLEGGILKYLED  213 (308)
T ss_pred             eehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence            9999999999 9999999999999988764

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.48  E-value=1.4e-13  Score=119.50  Aligned_cols=75  Identities=17%  Similarity=0.271  Sum_probs=65.2

Q ss_pred             HHHhCCCEEEEcCChhhHhccCCCC----ceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHH
Q 030104           82 ELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDL  157 (183)
Q Consensus        82 ~~~~~~~~lIDvR~~~e~~~ghIpg----Avnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L  157 (183)
                      +.+..+.++||||++.||..+||||    |+|+|+            ..+......++++++||+||.+|.+|..++..|
T Consensus       402 ~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~------------~~l~~~~~~l~~~~~iivyC~~G~rS~~aa~~L  469 (482)
T PRK01269        402 SELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPF------------YKLSTQFGDLDQSKTYLLYCDRGVMSRLQALYL  469 (482)
T ss_pred             HhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCH------------HHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHH
Confidence            3335668999999999999999999    999999            444455566788899999999999999999999


Q ss_pred             H-cCCCCeeEcc
Q 030104          158 L-NGFAGITDIA  168 (183)
Q Consensus       158 ~-~G~~~v~~l~  168 (183)
                      . .||+||++|.
T Consensus       470 ~~~G~~nv~~y~  481 (482)
T PRK01269        470 REQGFSNVKVYR  481 (482)
T ss_pred             HHcCCccEEecC
Confidence            9 9999999875

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.36  E-value=5.8e-12  Score=100.54  Aligned_cols=111  Identities=23%  Similarity=0.316  Sum_probs=86.1

Q ss_pred             cccCHHHHHHHHhC-CCEEEEcC---------ChhhHhccCCCCceecCccccc-----CCCCCCCHHHHHHHHhc--CC
Q 030104           73 TSVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FR  135 (183)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~lIDvR---------~~~e~~~ghIpgAvnip~~~~~-----~~~~~~~~~~~~~~~~~--l~  135 (183)
                      ..++++.+.+.+.+ +.+|||..         ...||..-|||||+++.++...     ...++...+.+++....  ++
T Consensus         5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~   84 (286)
T KOG1529|consen    5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD   84 (286)
T ss_pred             cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence            46778888887765 48999984         3567888999999999986432     12344444444444433  67


Q ss_pred             CCCeEEEEcC--Cch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          136 KHDEIIVGCQ--SGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       136 ~~~~ivv~c~--~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ++..+|||.+  .|+ .|.+++|+++ +|+++|++|+||+.+|...|+|+++
T Consensus        85 n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s  136 (286)
T KOG1529|consen   85 NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDS  136 (286)
T ss_pred             CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccc
Confidence            8889999999  777 5779999999 9999999999999999999999863

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=2.2e-12  Score=104.81  Aligned_cols=97  Identities=23%  Similarity=0.340  Sum_probs=73.4

Q ss_pred             CCCcccCHHHHHHHHhCC-------CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc---C---CC
Q 030104           70 GVPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---F---RK  136 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~---l---~~  136 (183)
                      .....|+++.++.++++.       ++|||+|-+.||..|||+||+||+..           +++...+-.   .   .+
T Consensus       153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~-----------~~~~~~f~~~~~~~~~~~  221 (325)
T KOG3772|consen  153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK-----------ELLQDFFLLKDGVPSGSK  221 (325)
T ss_pred             ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH-----------hhhhhhhccccccccccC
Confidence            455689999999999762       67999999999999999999999985           222222211   1   12


Q ss_pred             CCeEEEEcC-CchHHHHHHHHHH-------------cCCCCeeEccccHHHhhhC
Q 030104          137 HDEIIVGCQ-SGKRSMMAATDLL-------------NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       137 ~~~ivv~c~-~g~~s~~a~~~L~-------------~G~~~v~~l~GG~~~W~~~  177 (183)
                      ...+||+|. +..|+.++|..|+             +-|..+|+|+||+.+|...
T Consensus       222 ~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~  276 (325)
T KOG3772|consen  222 RVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN  276 (325)
T ss_pred             ceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence            356899998 6678888888775             2245789999999999754

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.27  E-value=2.3e-11  Score=97.15  Aligned_cols=132  Identities=19%  Similarity=0.363  Sum_probs=95.8

Q ss_pred             ceeEEccCCccccccccccCCcccc-CCCCc-----ccCHHHHHHHH--------hCCCEEEEcCChhhHh---------
Q 030104           44 DNIGFISSKILSFCPKASLRGNLEA-VGVPT-----SVPVRVAHELL--------QAGHRYLDVRTPEEFS---------  100 (183)
Q Consensus        44 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~-----~i~~~~~~~~~--------~~~~~lIDvR~~~e~~---------  100 (183)
                      ..+.++++++.+|.........-.. .+...     .++...+..+.        ..++..||.|...+|.         
T Consensus       115 ~~VslL~GG~~~Wk~~g~~~~s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~  194 (286)
T KOG1529|consen  115 TKVSLLNGGFRAWKAAGGPVDSSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSG  194 (286)
T ss_pred             cEEEEecCcHHHHHHcCCccccccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCccc
Confidence            6678899999999865443332211 11111     22222222221        2248999999999886         


Q ss_pred             --ccCCCCceecCcccccCC-CCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHh
Q 030104          101 --AGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAW  174 (183)
Q Consensus       101 --~ghIpgAvnip~~~~~~~-~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W  174 (183)
                        .||||||+|+|+...+.. +....++.+...+..  +..++++|+-|..|..+...+-.|. .| .++.+|+|++.+|
T Consensus       195 ~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew  273 (286)
T KOG1529|consen  195 ATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEW  273 (286)
T ss_pred             CcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHH
Confidence              689999999999887754 444446777776654  6678999999999999999999999 99 7899999999999


Q ss_pred             hh
Q 030104          175 RQ  176 (183)
Q Consensus       175 ~~  176 (183)
                      ..
T Consensus       274 ~~  275 (286)
T KOG1529|consen  274 AL  275 (286)
T ss_pred             hh
Confidence            85

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.74  E-value=2.9e-08  Score=80.51  Aligned_cols=94  Identities=19%  Similarity=0.332  Sum_probs=73.2

Q ss_pred             CcccCHHHHHHHHhCC-------CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHh-c-CCCCCeEEE
Q 030104           72 PTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-R-FRKHDEIIV  142 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~-~-l~~~~~ivv  142 (183)
                      .+.|+++.++.++++.       .+|||+|=+.||..|||-+||||.-.           +.+...+- . +.-..-+|+
T Consensus       241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aLif  309 (427)
T COG5105         241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRALIF  309 (427)
T ss_pred             hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeEEE
Confidence            3579999999998764       56999999999999999999999974           44444433 2 222355888


Q ss_pred             EcC-CchHHHHHHHHHH-cC------------CCCeeEccccHHHhhh
Q 030104          143 GCQ-SGKRSMMAATDLL-NG------------FAGITDIAGGFAAWRQ  176 (183)
Q Consensus       143 ~c~-~g~~s~~a~~~L~-~G------------~~~v~~l~GG~~~W~~  176 (183)
                      .|. +..|+...|.+|+ ..            |..|++|+||+.++-.
T Consensus       310 HCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~  357 (427)
T COG5105         310 HCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS  357 (427)
T ss_pred             EeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence            998 6779999999996 32            4579999999998754

>COG2603 Predicted ATPase [General function prediction only]

Probab=97.53  E-value=0.00016  Score=58.51  Aligned_cols=98  Identities=28%  Similarity=0.346  Sum_probs=62.9

Q ss_pred             HHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccC-----CCCCC-CHHHHH-------------HHH---hcC
Q 030104           77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVG-----SGMTK-NLKFVE-------------EVS---TRF  134 (183)
Q Consensus        77 ~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~-----~~~~~-~~~~~~-------------~~~---~~l  134 (183)
                      .+.+..++.++..+||||.+.||..|+.|+++|+|.....+     ..... ..+...             ..+   ...
T Consensus         5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f   84 (334)
T COG2603           5 EQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF   84 (334)
T ss_pred             HHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            45677777788899999999999999999999999842210     00000 000000             000   011


Q ss_pred             CCCCeEEEEcC-CchHHHHHHHHH-H-cCCCCeeEccccHHHhh
Q 030104          135 RKHDEIIVGCQ-SGKRSMMAATDL-L-NGFAGITDIAGGFAAWR  175 (183)
Q Consensus       135 ~~~~~ivv~c~-~g~~s~~a~~~L-~-~G~~~v~~l~GG~~~W~  175 (183)
                      -.+.++-++|. +|.||...+.+| . .|.+-+ -+.||+.+..
T Consensus        85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~~-r~iGGeKalr  127 (334)
T COG2603          85 QEENPVGILCARGGLRSKIVQKWLGYAAGIDYP-RVIGGEKALR  127 (334)
T ss_pred             HHhCCcceeeccccchhHHHHHHHHHHHHhhhh-hhhchHHHHH
Confidence            23456666687 556999999999 5 887544 3678887653

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=97.32  E-value=0.0019  Score=46.90  Aligned_cols=86  Identities=19%  Similarity=0.197  Sum_probs=52.6

Q ss_pred             CcccCHHHHHHHHhCC-CEEEEcCChhhHhccC----------CCC--ceecCcccccCCCCCCCHHHHHHHHhcC-CCC
Q 030104           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGH----------ATG--AINVPYMYRVGSGMTKNLKFVEEVSTRF-RKH  137 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~gh----------Ipg--Avnip~~~~~~~~~~~~~~~~~~~~~~l-~~~  137 (183)
                      ...++.+++..+.+.+ -.|||.|+..|.....          -+|  -+++|+..   ...  +.+.+......+ ..+
T Consensus        12 s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~---~~~--~~~~v~~f~~~~~~~~   86 (135)
T TIGR01244        12 SPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA---GDI--TPDDVETFRAAIGAAE   86 (135)
T ss_pred             cCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC---CCC--CHHHHHHHHHHHHhCC
Confidence            3567888888887778 7899999977643211          123  25666531   111  223333332222 235


Q ss_pred             CeEEEEcCCchHHHHHHHHHH--cCCC
Q 030104          138 DEIIVGCQSGKRSMMAATDLL--NGFA  162 (183)
Q Consensus       138 ~~ivv~c~~g~~s~~a~~~L~--~G~~  162 (183)
                      ++|+++|.+|.|+..++..+.  .|.+
T Consensus        87 ~pvL~HC~sG~Rt~~l~al~~~~~g~~  113 (135)
T TIGR01244        87 GPVLAYCRSGTRSSLLWGFRQAAEGVP  113 (135)
T ss_pred             CCEEEEcCCChHHHHHHHHHHHHcCCC
Confidence            799999999999876665444  6764

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=97.28  E-value=0.0024  Score=44.87  Aligned_cols=76  Identities=14%  Similarity=0.166  Sum_probs=40.0

Q ss_pred             cccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCC--------------ceecCcccccCCCCCCCHHHHHHHHhcCC-C
Q 030104           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATG--------------AINVPYMYRVGSGMTKNLKFVEEVSTRFR-K  136 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpg--------------Avnip~~~~~~~~~~~~~~~~~~~~~~l~-~  136 (183)
                      ..++++++.++.+.| -.||+.|+..|-.  +-|.              -+|+|+..     .....+.+......+. .
T Consensus        13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~-----~~~~~~~v~~f~~~l~~~   85 (110)
T PF04273_consen   13 GQPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDG-----GAITEEDVEAFADALESL   85 (110)
T ss_dssp             CS--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----T-----TT--HHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCC-----CCCCHHHHHHHHHHHHhC
Confidence            467899999999999 6899999876521  1111              36777631     1122333343333332 3


Q ss_pred             CCeEEEEcCCchHHHHHHH
Q 030104          137 HDEIIVGCQSGKRSMMAAT  155 (183)
Q Consensus       137 ~~~ivv~c~~g~~s~~a~~  155 (183)
                      .++|.+||.+|.|+...|.
T Consensus        86 ~~Pvl~hC~sG~Ra~~l~~  104 (110)
T PF04273_consen   86 PKPVLAHCRSGTRASALWA  104 (110)
T ss_dssp             TTSEEEE-SCSHHHHHHHH
T ss_pred             CCCEEEECCCChhHHHHHH
Confidence            5699999999999975543

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=96.11  E-value=0.00077  Score=55.84  Aligned_cols=83  Identities=8%  Similarity=0.050  Sum_probs=54.0

Q ss_pred             ccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCC--chHH-
Q 030104           74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS--GKRS-  150 (183)
Q Consensus        74 ~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~--g~~s-  150 (183)
                      .-+++++.+.+.....++|+|....|..+||+|++|+|...        -..++.++.. .+..+++++.-..  +... 
T Consensus        15 i~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~~--------~~~~~~~l~~-~~~~~~i~l~~~~~~~~~f~   85 (314)
T PRK00142         15 IEDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIEQ--------TEAYMAWLKA-DPRFADIRFKISEDDGHAFP   85 (314)
T ss_pred             CCCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHHH--------HHHHHHHHhh-CcCCCCceEEeccccCCCcc
Confidence            34567888777777789999999999999999999999831        0122222222 1124555555433  2333 


Q ss_pred             ---HHHHHHHH-cCCC-Cee
Q 030104          151 ---MMAATDLL-NGFA-GIT  165 (183)
Q Consensus       151 ---~~a~~~L~-~G~~-~v~  165 (183)
                         .++...|. .|++ ++.
T Consensus        86 ~l~~~~~~eLv~~G~d~~v~  105 (314)
T PRK00142         86 RLSVKVRKEIVALGLDDDID  105 (314)
T ss_pred             cceeeeeeeeeecCCCCCCC
Confidence               56777777 8885 554

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.10  E-value=0.0021  Score=56.52  Aligned_cols=95  Identities=18%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             CCCcccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC-----CCCCeEEEEc
Q 030104           70 GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-----RKHDEIIVGC  144 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~ivv~c  144 (183)
                      ...+.++++++..+  ....++|.|...||..+|+++++|+|+.        ..+..+++. ..+     ..+++++++.
T Consensus       619 e~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~--------~~ea~l~~~-~~l~~~~~~~~~~~v~~~  687 (725)
T KOG1093|consen  619 EHCPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN--------NHEADLDWL-RFLPGIVCSEGKKCVVVG  687 (725)
T ss_pred             hcCccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc--------chHHHHHHh-hcchHhHHhhCCeEEEec
Confidence            34456777776655  4478999999999999999999999994        111222221 111     2456667666


Q ss_pred             CCchHHHHHHHHHH-cCCCCeeEccccHHHhh
Q 030104          145 QSGKRSMMAATDLL-NGFAGITDIAGGFAAWR  175 (183)
Q Consensus       145 ~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~  175 (183)
                      .....+.+....+. +-+.++.++++|+.+..
T Consensus       688 ~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~~  719 (725)
T KOG1093|consen  688 KNDKHAAERLTELYVMKVPRICILHDGFNNID  719 (725)
T ss_pred             cchHHHHHHhhHHHHhcccHHHHHHHHHhhcC
Confidence            66666767777777 77888889999998543

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=94.88  E-value=0.056  Score=46.58  Aligned_cols=82  Identities=18%  Similarity=0.264  Sum_probs=50.4

Q ss_pred             CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHh--------cCC-----CCCeEEEEcCCch------
Q 030104           88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--------RFR-----KHDEIIVGCQSGK------  148 (183)
Q Consensus        88 ~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~--------~l~-----~~~~ivv~c~~g~------  148 (183)
                      ++|||+|+.++|..||+-.|.|+.-.-     +...+..++....        .+.     .+....+.. +|.      
T Consensus       327 FFiVDcRpaeqynaGHlstaFhlDc~l-----mlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfmG-sGr~EED~Y  400 (669)
T KOG3636|consen  327 FFIVDCRPAEQYNAGHLSTAFHLDCVL-----MLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFMG-SGRDEEDNY  400 (669)
T ss_pred             EEEEeccchhhcccccchhhhcccHHH-----HhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEec-cCcchHHHH
Confidence            789999999999999999999987631     2222332222111        122     224455544 443      


Q ss_pred             HHHHHHHHHHcCCCCeeEccccHHHhh
Q 030104          149 RSMMAATDLLNGFAGITDIAGGFAAWR  175 (183)
Q Consensus       149 ~s~~a~~~L~~G~~~v~~l~GG~~~W~  175 (183)
                      .-..+|.+|+.+-..|.++.||+.+..
T Consensus       401 mnMviA~FlQKnk~yVS~~~GGy~~lh  427 (669)
T KOG3636|consen  401 MNMVIAMFLQKNKLYVSFVQGGYKKLH  427 (669)
T ss_pred             HHHHHHHHHhcCceEEEEecchHHHHH
Confidence            122345555545457999999998765

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=94.05  E-value=0.17  Score=36.17  Aligned_cols=79  Identities=19%  Similarity=0.214  Sum_probs=42.4

Q ss_pred             HHHHHhCC-CEEEEcCChhhHhc-cCCCCceecCcccccCCCCCCCHHHHHHHH----hcCCCCCeEEEEcCCch-HHHH
Q 030104           80 AHELLQAG-HRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVS----TRFRKHDEIIVGCQSGK-RSMM  152 (183)
Q Consensus        80 ~~~~~~~~-~~lIDvR~~~e~~~-ghIpgAvnip~~~~~~~~~~~~~~~~~~~~----~~l~~~~~ivv~c~~g~-~s~~  152 (183)
                      +..+.+.+ ..||+++...+... ..+ .-+++|+.+....   ...+.+....    .....+++|+|.|..|. ||..
T Consensus        19 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~~~---~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~   94 (138)
T smart00195       19 LALLKKLGITHVINVTNEVPNLNKKGF-TYLGVPILDNTET---KISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSAT   94 (138)
T ss_pred             HHHHHHcCCCEEEEccCCCCCCCCCCC-EEEEEECCCCCCC---ChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHH
Confidence            34444556 68999987654321 111 2356776431111   1112222222    22456789999999986 7763


Q ss_pred             --HHHHHH-cCCC
Q 030104          153 --AATDLL-NGFA  162 (183)
Q Consensus       153 --a~~~L~-~G~~  162 (183)
                        +++.+. .|++
T Consensus        95 v~~~yl~~~~~~~  107 (138)
T smart00195       95 LIIAYLMKYRNLS  107 (138)
T ss_pred             HHHHHHHHHhCCC
Confidence              444455 7764

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=93.85  E-value=0.62  Score=34.57  Aligned_cols=94  Identities=19%  Similarity=0.291  Sum_probs=44.6

Q ss_pred             CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhcc---CCCCc--eecCcccccCC------------------------C
Q 030104           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG---HATGA--INVPYMYRVGS------------------------G  119 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~g---hIpgA--vnip~~~~~~~------------------------~  119 (183)
                      .....++.++...+.+-+ -.|||.|++.|....   .++|.  +|+|+......                        .
T Consensus        25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~  104 (164)
T PF13350_consen   25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYRE  104 (164)
T ss_dssp             S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHH
T ss_pred             CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHH
Confidence            445668888888887666 789999999998643   34454  45665321110                        0


Q ss_pred             -CCCCHHHHHHHHhcC-CCCCeEEEEcCCch-HHH-HHHHHHH-cCCCC
Q 030104          120 -MTKNLKFVEEVSTRF-RKHDEIIVGCQSGK-RSM-MAATDLL-NGFAG  163 (183)
Q Consensus       120 -~~~~~~~~~~~~~~l-~~~~~ivv~c~~g~-~s~-~a~~~L~-~G~~~  163 (183)
                       .......+...+..+ +...++++.|..|. |-. .++..|. +|.+.
T Consensus       105 ~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~  153 (164)
T PF13350_consen  105 MLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD  153 (164)
T ss_dssp             GGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred             HHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence             111233444444432 33369999999987 444 4555556 89864

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=93.82  E-value=0.023  Score=45.77  Aligned_cols=99  Identities=20%  Similarity=0.218  Sum_probs=56.4

Q ss_pred             ccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCC----CCCCCHHHHHHHHh-cCC----CCCeEEEE
Q 030104           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGS----GMTKNLKFVEEVST-RFR----KHDEIIVG  143 (183)
Q Consensus        74 ~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~----~~~~~~~~~~~~~~-~l~----~~~~ivv~  143 (183)
                      .++.+++.+.+..+ .+++|+|+    +..||.+|+|+-+..++..    +...-...+..... ...    +...+|.|
T Consensus         5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~vily   80 (343)
T KOG1717|consen    5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTVILY   80 (343)
T ss_pred             HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCcceeeec
Confidence            45677888877655 89999999    5689999999877422200    00000000000000 001    12568888


Q ss_pred             cCCch------HHH----HHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104          144 CQSGK------RSM----MAATDLL-NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       144 c~~g~------~s~----~a~~~L~-~G~~~v~~l~GG~~~W~~~  177 (183)
                      +.+..      .+.    ...+.++ .|+ .++.|.|||..++.+
T Consensus        81 D~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e  124 (343)
T KOG1717|consen   81 DESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAE  124 (343)
T ss_pred             ccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhh
Confidence            87622      111    1224455 787 689999999887654

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=93.81  E-value=0.28  Score=40.67  Aligned_cols=95  Identities=17%  Similarity=0.093  Sum_probs=56.9

Q ss_pred             eEEccCCccccccccccCC-------ccccCCCCcccCHHHHHHHHhC-CCEEEEcCChhhHhc---cCCC-CceecCcc
Q 030104           46 IGFISSKILSFCPKASLRG-------NLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT-GAINVPYM  113 (183)
Q Consensus        46 ~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~---ghIp-gAvnip~~  113 (183)
                      +..+.++|.+|........       ........+.+...++.+.+.+ +..|||+|+..+|..   |||+ |..  |-.
T Consensus       102 v~~L~GG~~aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q--psq  179 (311)
T TIGR03167       102 VPRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ--PSQ  179 (311)
T ss_pred             EEEecChHHHHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC--Cch
Confidence            4567899998875331111       1111223456677777776654 489999999999987   8888 432  221


Q ss_pred             cccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchH
Q 030104          114 YRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  149 (183)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~  149 (183)
                      ..       ....+...+..++++.+|+|-|.+...
T Consensus       180 ~~-------fe~~L~~~l~~~~~~~~i~~e~es~~i  208 (311)
T TIGR03167       180 KR-------FENALAEALRRLDPGRPIFVEDESRRI  208 (311)
T ss_pred             HH-------HHHHHHHHHHhCCCCceEEEEeCchhh
Confidence            00       113333333345777788888887653

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=93.21  E-value=0.29  Score=34.80  Aligned_cols=82  Identities=20%  Similarity=0.210  Sum_probs=41.8

Q ss_pred             HHHHHhCC-CEEEEcCChhhHhccCCCC--ceecCcccccCCCCCCCHHH-HHHHHhcCCCCCeEEEEcCCch-HHHHH-
Q 030104           80 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKF-VEEVSTRFRKHDEIIVGCQSGK-RSMMA-  153 (183)
Q Consensus        80 ~~~~~~~~-~~lIDvR~~~e~~~ghIpg--Avnip~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ivv~c~~g~-~s~~a-  153 (183)
                      ...+.+.+ ..|||+++..++..-+.+|  -.++|+.+.-.......... ++........+++|+|+|..|. ||..+ 
T Consensus        20 ~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~   99 (139)
T cd00127          20 KELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLV   99 (139)
T ss_pred             HHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHH
Confidence            33444456 6899999988752222222  35666643221111100111 1222222345689999999987 77633 


Q ss_pred             -HHHHH-cCC
Q 030104          154 -ATDLL-NGF  161 (183)
Q Consensus       154 -~~~L~-~G~  161 (183)
                       +..+. .|+
T Consensus       100 ~~~l~~~~~~  109 (139)
T cd00127         100 IAYLMKTLGL  109 (139)
T ss_pred             HHHHHHHcCC
Confidence             33444 554

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.16  E-value=1.1  Score=31.93  Aligned_cols=83  Identities=18%  Similarity=0.141  Sum_probs=51.0

Q ss_pred             CCCcccCHHHHHHHHhCC-CEEEEcCChhhHh-------------ccCCCCceecCcccccCCCCCCCHHHHHHHHhcC-
Q 030104           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFS-------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-  134 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~-------------~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l-  134 (183)
                      +....++++++.++...+ ..||--|+..|-.             ..-+. -.+||..     +.-..++.++.....+ 
T Consensus        11 sVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~   84 (130)
T COG3453          11 SVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALD   84 (130)
T ss_pred             eecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHH
Confidence            455678899999998888 5689999865532             11111 2455552     1112233344333333 


Q ss_pred             CCCCeEEEEcCCchHHHHHHHHHH
Q 030104          135 RKHDEIIVGCQSGKRSMMAATDLL  158 (183)
Q Consensus       135 ~~~~~ivv~c~~g~~s~~a~~~L~  158 (183)
                      ..+.+|+.||++|.||...+..-.
T Consensus        85 eaegPVlayCrsGtRs~~ly~~~~  108 (130)
T COG3453          85 EAEGPVLAYCRSGTRSLNLYGLGE  108 (130)
T ss_pred             HhCCCEEeeecCCchHHHHHHHHH
Confidence            246799999999999986665444

>PLN02727 NAD kinase

Probab=90.79  E-value=1.1  Score=42.22  Aligned_cols=83  Identities=14%  Similarity=0.115  Sum_probs=52.9

Q ss_pred             CCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCC------------CceecCcccccCCCCCCCHHHHHHHHhcC-C-
Q 030104           71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT------------GAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-  135 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIp------------gAvnip~~~~~~~~~~~~~~~~~~~~~~l-~-  135 (183)
                      +...+++++++.+.+.| -.||+.|+..|- .+..+            .-+|+|+.    .......+.+.+..+.+ + 
T Consensus       265 rsgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs----~~~apt~EqVe~fa~~l~~s  339 (986)
T PLN02727        265 RGGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVE----VRTAPSAEQVEKFASLVSDS  339 (986)
T ss_pred             EeCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecC----CCCCCCHHHHHHHHHHHHhh
Confidence            34578999999998888 679999997762 22221            13577762    11223446666665555 3 


Q ss_pred             CCCeEEEEcCCchHHH--HHHHHHH
Q 030104          136 KHDEIIVGCQSGKRSM--MAATDLL  158 (183)
Q Consensus       136 ~~~~ivv~c~~g~~s~--~a~~~L~  158 (183)
                      ..+||+++|.+|.+..  .++.++.
T Consensus       340 lpkPVLvHCKSGarRAGamvA~yl~  364 (986)
T PLN02727        340 SKKPIYLHSKEGVWRTSAMVSRWKQ  364 (986)
T ss_pred             cCCCEEEECCCCCchHHHHHHHHHH
Confidence            3689999999999433  4444443

>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=88.82  E-value=1.1  Score=31.66  Aligned_cols=80  Identities=18%  Similarity=0.228  Sum_probs=41.6

Q ss_pred             HHhCC-CEEEEcCChhhH---hccCCCCceecCcccccCCCCCCCHHHHHHHHhc-CCCCCeEEEEcCCch-HHHH--HH
Q 030104           83 LLQAG-HRYLDVRTPEEF---SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FRKHDEIIVGCQSGK-RSMM--AA  154 (183)
Q Consensus        83 ~~~~~-~~lIDvR~~~e~---~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ivv~c~~g~-~s~~--a~  154 (183)
                      +.+.+ ..||+++...+.   ....--.-+++|..+.........-..+.+.+.. ..++.+|+|+|..|. ||..  ++
T Consensus        14 l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a   93 (133)
T PF00782_consen   14 LKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAA   93 (133)
T ss_dssp             HHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHH
T ss_pred             HHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHH
Confidence            33456 578999886543   2222223466666431212112222222233322 456789999999987 7663  33


Q ss_pred             HHHH-cCCC
Q 030104          155 TDLL-NGFA  162 (183)
Q Consensus       155 ~~L~-~G~~  162 (183)
                      ..+. .|++
T Consensus        94 yLm~~~~~~  102 (133)
T PF00782_consen   94 YLMKKNGMS  102 (133)
T ss_dssp             HHHHHHTSS
T ss_pred             HHHHHcCCC
Confidence            3444 6663

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....

>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species

Probab=87.04  E-value=1.6  Score=32.84  Aligned_cols=82  Identities=21%  Similarity=0.289  Sum_probs=35.5

Q ss_pred             HHHHHHhCC-CEEEEcCChhhHhccCCCC-----------ceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCC
Q 030104           79 VAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS  146 (183)
Q Consensus        79 ~~~~~~~~~-~~lIDvR~~~e~~~ghIpg-----------Avnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~  146 (183)
                      ++.++.+.+ ..||=.=+..|...-.+|+           -+++|+.+.--+......+.+.++...+..+++|++.|.+
T Consensus        63 DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~G  142 (168)
T PF05706_consen   63 DLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRG  142 (168)
T ss_dssp             HHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SS
T ss_pred             HHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence            455565566 3344455666666555553           2467764322221100112233333446778999999998


Q ss_pred             ch-HHHH-HHHHHH-cC
Q 030104          147 GK-RSMM-AATDLL-NG  160 (183)
Q Consensus       147 g~-~s~~-a~~~L~-~G  160 (183)
                      |. |+.. |+..|. +|
T Consensus       143 GlGRtGlvAAcLLl~L~  159 (168)
T PF05706_consen  143 GLGRTGLVAACLLLELG  159 (168)
T ss_dssp             SSSHHHHHHHHHHHHH-
T ss_pred             CCCHHHHHHHHHHHHHc
Confidence            86 7664 454554 55

The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=86.97  E-value=0.92  Score=38.03  Aligned_cols=82  Identities=10%  Similarity=-0.056  Sum_probs=48.6

Q ss_pred             eecCCCCCcccee-ccccCCCccceeEE-----c----cCCccccccccccCCccccCCCCcccCHHHHHHHHh------
Q 030104           22 VLCPHGNNRRGLL-SLTVDQQRCDNIGF-----I----SSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQ------   85 (183)
Q Consensus        22 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----l----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------   85 (183)
                      .+|-.+.+++... ...++|.|+.....     +    .+++..+|..   ............++++++.+.++      
T Consensus       219 ~~d~~~~~~~~~~~~~~~~~~Cp~Cg~~~~~~~~~~~~~~~~~~lcg~---~~~~~~~~~~~~i~~~~~~~~l~~~~~~~  295 (339)
T PRK07688        219 SFDVWKNEYSCMNVQKLKKDNCPSCGEKALYPYLNYENTTKTAVLCGR---NTVQIRPPHKEEYDLEELAELLRDRGLDV  295 (339)
T ss_pred             EEECCCCeEEEEEecCCCCCCCCCCCCCCCccccchhhccchhhhcCc---cccccccCCcCccCHHHHHHHHHhccccc
Confidence            5888888887765 33456777533211     1    0112234421   01011123446789998887772      


Q ss_pred             -CCCEEEEcCChhhHhccCCCCc
Q 030104           86 -AGHRYLDVRTPEEFSAGHATGA  107 (183)
Q Consensus        86 -~~~~lIDvR~~~e~~~ghIpgA  107 (183)
                       .+.++||||++. |+..++|+-
T Consensus       296 ~~~~~ll~vr~~~-~~~~~~~~g  317 (339)
T PRK07688        296 NVNPYLLSFSLEE-KRLVLFKDG  317 (339)
T ss_pred             CCCcEEEEEecCC-eEEEEEcCC
Confidence             358899999988 999999853

>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]

Probab=85.20  E-value=1.4  Score=33.46  Aligned_cols=29  Identities=38%  Similarity=0.624  Sum_probs=19.7

Q ss_pred             CCCCCeEEEEcCCch-HHH--HHHHHHH-cCCC
Q 030104          134 FRKHDEIIVGCQSGK-RSM--MAATDLL-NGFA  162 (183)
Q Consensus       134 l~~~~~ivv~c~~g~-~s~--~a~~~L~-~G~~  162 (183)
                      +.++++|+|.|..|. ||.  .+|+.+. .|..
T Consensus       102 ~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~  134 (180)
T COG2453         102 LSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS  134 (180)
T ss_pred             HhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence            466779999999886 666  3444555 4543

>PRK12361 hypothetical protein; Provisional

Probab=81.70  E-value=2.9  Score=37.24  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=39.5

Q ss_pred             HHHHHHHHhCC-CEEEEcCChhhHh-ccCCC---CceecCcccccCCCCCCCHHHHHHHHhc----CCCCCeEEEEcCCc
Q 030104           77 VRVAHELLQAG-HRYLDVRTPEEFS-AGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSG  147 (183)
Q Consensus        77 ~~~~~~~~~~~-~~lIDvR~~~e~~-~ghIp---gAvnip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ivv~c~~g  147 (183)
                      +.+...+.+.+ ..|||++.+.+.. ....+   .-+++|..+...    ...+.+.+..+.    ...+.+|+|.|..|
T Consensus       110 a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~----p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G  185 (547)
T PRK12361        110 PADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSV----PTLAQLNQAINWIHRQVRANKSVVVHCALG  185 (547)
T ss_pred             cccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCC----CcHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence            34555555556 7899999543221 11112   246778753221    122333433333    34578999999988


Q ss_pred             h-HHHH
Q 030104          148 K-RSMM  152 (183)
Q Consensus       148 ~-~s~~  152 (183)
                      . ||..
T Consensus       186 ~sRSa~  191 (547)
T PRK12361        186 RGRSVL  191 (547)
T ss_pred             CCcHHH
Confidence            7 6663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
1tq1_A	129	Solution Structure Of At5g66040, A Putative Protein		1e-40
3tp9_A	474	Crystal Structure Of Alicyclobacillus Acidocaldariu		2e-06
2kl3_A	132	Solution Nmr Structure Of The Rhodanese-Like Domain		2e-04
3r2u_A	466	2.1 Angstrom Resolution Crystal Structure Of Metall		5e-04
3gk5_A	108	Crystal Structure Of Rhodanese-Related Protein (Tvg		6e-04
3ilm_A	141	Crystal Structure Of The Alr3790 Protein From Anaba		6e-04
2eg4_A	230	Crystal Structure Of Probable Thiosulfate Sulfurtra		7e-04
1gn0_A	108	Escherichia Coli Glpe Sulfurtransferase Soaked With		7e-04
3hix_A	106	Crystal Structure Of The Rhodanese_3 Like Domain Fr		7e-04
3k9r_A	115	X-Ray Structure Of The Rhodanese-Like Domain Of The		7e-04
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		9e-04

>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From Arabidosis Thaliana Length = 129

Iteration: 1
 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Query: 71  VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct: 16  VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQV 75
Query: 131 STRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPTE 182
           S+ F + D IIVGCQSG RS+ A TDLL+ GF G+ DI GG++AW +NGLPT+
Sbjct: 76  SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 128

>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius Protein With Beta-Lactamase And Rhodanese Domains Length = 474

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           P  V   L Q G   LDVR  +E++ GH   A ++P        ++K    + +V     
Sbjct: 378 PDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP--------LSKLAAHIHDVP---- 425
Query: 136 KHDEIIVGCQSGKRSMMAATDL-LNGFAGITDIAGGFAAWRQNGLPTE 182
           +   + V C++G RS +AA+ L  +G   + +  GG+ AWR  G P E
Sbjct: 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNXVGGYEAWRGKGFPVE 473

>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From Anabaena Sp Alr3790 Protein. Northeast Structural Genomics Consortium Target Nsr437a Length = 132

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR    ++ GH  GA+ +P               V+  S+   K  +I V   +G   
Sbjct: 24  LDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYV-YGAGDEQ 71
Query: 151 MMAATDLLN--GFAGITDIAGGFAAWRQNGLPTE 182
              A +LL   GF  ++++ GG AAW+  G PTE
Sbjct: 72  TSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 105

>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp. Aureus Col Length = 466

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 40/169 (23%)
Query: 26  HGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQ 85
           HG +  G +++  D+   + IG+     L++  + +L G+   V   T     + ++ + 
Sbjct: 309 HGGHIEGTINIPYDKNFINQIGWY----LNYDQEINLIGDYHLVSKATHTLQLIGYDDI- 363
Query: 86  AGHRY----------------------LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN 123
           AG++                       LDVR   E++ GH + A++VP+   +       
Sbjct: 364 AGYQLPQSKIQTRSIHSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLL------- 416
Query: 124 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGF 171
                E    F K+D I V CQSG RS +A   L + G+  I ++  G+
Sbjct: 417 -----ETDLPFNKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGY 460

>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein (Tvg0868615) From Thermoplasma Volcanium, Northeast Structural Genomics Consortium Target Tvr109a Length = 108

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS 146
            +  LDVR P E   G    +IN+P      S + +  K +E    R +K+  I   C  
Sbjct: 17  AYTVLDVREPFELIFGSIANSINIPI-----SELREKWKILE----RDKKYAVI---CAH 64
Query: 147 GKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPT 181
           G RS  A   L      I D+ GG  +W + G P 
Sbjct: 65  GNRSAAAVEFLSQLGLNIVDVEGGIQSWIEEGYPV 99

>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena Sp. Northeast Structural Genomics Consortium Target Nsr437h Length = 141

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR    ++ GH  GA   P               V+  S+   K  +I V   +G   
Sbjct: 21  LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYV-YGAGDEQ 68
Query: 151 MMAATDLLN--GFAGITDIAGGFAAWRQNGLPTE 182
              A +LL   GF  ++++ GG AAW+  G PTE
Sbjct: 69  TSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 102

>pdb|2EG4|A Chain A, Crystal Structure Of Probable Thiosulfate Sulfurtransferase Length = 230

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 19/104 (18%)
Query: 91  LDVRTPEEFSA----------GHATGAINVPY-MYRVGSGMTKNLKFVEEVSTRFRKHDE 139
           LDVR+PEEF            G   G+ N P  ++    G+ + L          +   E
Sbjct: 135 LDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPEGLLERLGL--------QPGQE 186
Query: 140 IIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTEP 183
           + V C SG RS +A   L +      +  G    W Q GLPTEP
Sbjct: 187 VGVYCHSGARSAVAFFVLRSLGVRARNYLGSMHEWLQEGLPTEP 230

>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn Length = 108

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 75  VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           + V  AH+ LQ     L D+R P+ F+ GHA  A ++     +G+ M  N     +  T 
Sbjct: 7   INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND-TLGAFMRDN-----DFDT- 59
Query: 134 FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
                 ++V C  G  S  AA  LL  G+  +  I GGF AW Q   P E
Sbjct: 60  -----PVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW-QRQFPAE 103

>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From Anabaena Sp Alr3790 Protein. Northeast Structural Genomics Consortium Target Nsr437i Length = 106

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR    ++ GH  GA   P               V+  S+   K  +I V   +G   
Sbjct: 17  LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYV-YGAGDEQ 64
Query: 151 MMAATDLLN--GFAGITDIAGGFAAWRQNGLPTE 182
              A +LL   GF  ++++ GG AAW+  G PTE
Sbjct: 65  TSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 98

>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The Alr3790 Protein From Anabaena Sp. Northeast Structural Genomics Consortium Target Nsr437c. Length = 115

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR    ++ GH  GA   P               V+  S+   K  +I V   +G   
Sbjct: 26  LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYV-YGAGDEQ 73
Query: 151 MMAATDLLN--GFAGITDIAGGFAAWRQNGLPTE 182
              A +LL   GF  ++++ GG AAW+  G PTE
Sbjct: 74  TSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 107

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR---KHDEIIVGCQSG 147
           LDVR P E   G   GA+N+P               V+E+  R     K  EII+ CQ G
Sbjct: 490 LDVRNPGELQNGGLEGAVNIP---------------VDELRDRXHELPKDKEIIIFCQVG 534
Query: 148 KRSMMAATDLLNGFAGITDIAGGFAAWR 175
            R  +A   L+N      ++ GG+  ++
Sbjct: 535 LRGNVAYRQLVNNGYRARNLIGGYRTYK 562

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1tq1_A	129	AT5G66040, senescence-associated family protein; C	7e-47
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	3e-27
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	1e-26
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	1e-22
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	1e-21
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	2e-21
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	1e-20
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	3e-20
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	9e-20
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	2e-19
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	2e-19
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	3e-04
1vee_A	134	Proline-rich protein family; hypothetical protein,	5e-19
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	7e-19
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	1e-18
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	1e-18
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	3e-18
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	4e-15
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	3e-10
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	3e-08
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	4e-18
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	6e-18
2jtq_A	85	Phage shock protein E; solution structure rhodanes	7e-18
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	5e-16
3r2u_A	466	Metallo-beta-lactamase family protein; structural	1e-15
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	6e-15
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	1e-14
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	2e-11
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	8e-11
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	1e-10
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	3e-10
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	2e-09
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	6e-09
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	1e-08
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	1e-08
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	3e-06
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	6e-06
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	2e-05
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	3e-05
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	5e-05
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	9e-05
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	9e-05
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	3e-04
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	6e-04
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	6e-04
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	9e-04

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score =  148 bits (376), Expect = 7e-47
 Identities = 78/117 (66%), Positives = 91/117 (77%), Gaps = 1/117 (0%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 126
           E   VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F
Sbjct: 12  EESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDF 71

Query: 127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
           +E+VS+ F + D IIVGCQSG RS+ A TDLL  GF G+ DI GG++AW +NGLPT+
Sbjct: 72  LEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 128

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 98.1 bits (245), Expect = 3e-27
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR    ++ GH  GA+ +P               V+  S+   K  +I V     +++
Sbjct: 17  LDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 65

Query: 151 MMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
             A   L   GF  ++++ GG AAW+  G PTE
Sbjct: 66  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 98

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 97.5 bits (243), Expect = 1e-26
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 18/110 (16%)

Query: 80  AHEL---LQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           AH L   L+ G      LDVR    ++ GH  GA+ +P               V+  S+ 
Sbjct: 4   AHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSS 52

Query: 134 FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
             K  +I V     +++  A   L   GF  ++++ GG AAW+  G PTE
Sbjct: 53  LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 102

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 87.1 bits (216), Expect = 1e-22
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 80  AHELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FR 135
              ++         +DVR P E+S  H   +INVPY     +     L+F +++      
Sbjct: 30  MKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPD 89

Query: 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPT 181
              E+I  C SGKR   A      +G++  +   G    W  +G   
Sbjct: 90  SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDK 136

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 83.8 bits (208), Expect = 1e-21
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 15/111 (13%)

Query: 74  SVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 132
            + V  AH+ LQ     L D+R P+ F+ GHA  A ++               F+ +   
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT--------NDTLGAFMRDN-- 55

Query: 133 RFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
                  ++V C  G  S  AA  LL  G+  +  I GGF AW++   P E
Sbjct: 56  --DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE 103

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 83.5 bits (207), Expect = 2e-21
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 12/93 (12%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           +DVR  +E+   H   A  +         +    K  + +S    K  ++++ C++G+R+
Sbjct: 20  VDVRELDEYEELHLPNATLIS--------VNDQEKLADFLS--QHKDKKVLLHCRAGRRA 69

Query: 151 MMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
           + AA  +   G+     + G    + + G    
Sbjct: 70  LDAAKSMHELGYTPYY-LEGNVYDFEKYGFRMV 101

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 80.0 bits (198), Expect = 3e-20
 Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 16/107 (14%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
           A +L +    Y  LDVR P E   G    +IN+P            +  + E      + 
Sbjct: 8   AADLYENIKAYTVLDVREPFELIFGSIANSINIP------------ISELREKWKILERD 55

Query: 138 DEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP 183
            +  V C  G RS  A   L   G   I D+ GG  +W + G P   
Sbjct: 56  KKYAVICAHGNRSAAAVEFLSQLGLN-IVDVEGGIQSWIEEGYPVVL 101

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 79.7 bits (197), Expect = 9e-20
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 19/119 (15%)

Query: 75  VPVRVAHELLQAGHRY---LDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           +    A  L ++G      +D+R P E    G   G+ +         GM   L+F  + 
Sbjct: 24  LTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTR------GM---LEFWIDP 74

Query: 131 STRFRKHD-----EIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPTEP 183
            + + K       + +  C  G RS +AA    + G   +  I GGF AWR  G P E 
Sbjct: 75  QSPYAKPIFQEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEA 133

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 78.0 bits (193), Expect = 2e-19
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 16/110 (14%)

Query: 74  SVPVRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           S+ V    E +   +    +DVRT +E + G   GA  +P M  +   +           
Sbjct: 3   SITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIP-MNSIPDNLNY--------- 52

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLP 180
             F  ++   + C++G RS      L  NG     ++ GG   +   GL 
Sbjct: 53  --FNDNETYYIICKAGGRSAQVVQYLEQNGVN-AVNVEGGMDEFGDEGLE 99

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 83.5 bits (206), Expect = 2e-19
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 126
           +        P  V   L Q G   LDVR  +E++ GH   A ++P            L  
Sbjct: 369 DVASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP------------LSK 416

Query: 127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
           +        +   + V C++G RS +AA+ L  +G   + ++ GG+ AWR  G P E
Sbjct: 417 LAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVE 473

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 17/106 (16%), Positives = 27/106 (25%), Gaps = 10/106 (9%)

Query: 78  RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
                  + G   LDVR  + F+  H  G++N+P+             FV          
Sbjct: 277 PERVRAWREGGVVLDVRPADAFAKRHLAGSLNIPWN----------KSFVTWAGWLLPAD 326

Query: 138 DEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTEP 183
             I +         +       G   + D     A  R        
Sbjct: 327 RPIHLLAADAIAPDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVAS 372

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 77.7 bits (191), Expect = 5e-19
 Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 9/120 (7%)

Query: 73  TSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPY-MYRVGSGMTKNLKFVEE 129
           +S   + A+  L      + LD+R   +F    +     +                F+++
Sbjct: 5   SSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKK 64

Query: 130 VSTRF--RKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF---AAWRQNGLPTEP 183
           +S +F   ++  + +  +    S + A  +  NGF     I  G      W  + LP   
Sbjct: 65  LSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIE 124

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 77.8 bits (191), Expect = 7e-19
 Identities = 30/125 (24%), Positives = 44/125 (35%), Gaps = 24/125 (19%)

Query: 80  AHELLQAG--HRYLDVRTPEEFSAGHATGAINVP----YMYRVGSGMTKNLKFVEEVSTR 133
           A E+L        +DVR   E+         ++     Y+    S  T N  F+ E+  R
Sbjct: 12  AWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDR 71

Query: 134 F-----RKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAA------------WR 175
                 +    +I  C+SG RS+ AA      G     ++  GF              WR
Sbjct: 72  IPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWR 131

Query: 176 QNGLP 180
             GLP
Sbjct: 132 AVGLP 136

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 76.6 bits (189), Expect = 1e-18
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 25/114 (21%)

Query: 79  VAHELLQAGHRY--LDVRT-PEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           V  ++  A  +Y  LDVR  P +       GAI +P                ++++TR  
Sbjct: 22  VLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMP---------------AKDLATRIG 66

Query: 136 ---KHDEIIVGCQSGKRSMMA-ATDLL--NGFAGITDIAGGFAAWRQNGLPTEP 183
                   +V   +G  ++   A  +L   GF    ++AG    W+   LP E 
Sbjct: 67  ELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEH 119

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 75.3 bits (186), Expect = 1e-18
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 19/106 (17%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
            V       LL+ G   +DVR  +  S      A  VP               +E++   
Sbjct: 3   KVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVP---------------LEKIQKG 47

Query: 134 FRK--HDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ 176
                   +++ C+ G  S +AA  L   G+     + GG  A  Q
Sbjct: 48  EHGLPRRPLLLVCEKGLLSQVAALYLEAEGY-EAMSLEGGLQALTQ 92

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 80.2 bits (197), Expect = 3e-18
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 13/108 (12%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           P  +A  L + G R LD      ++  H  GA  V                +++   R  
Sbjct: 381 PTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVL------------RSQLKQALERLG 428

Query: 136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
             +  ++ C S   +  A  ++       +  + GG +AW   GLPTE
Sbjct: 429 TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTE 476

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 71.3 bits (174), Expect = 4e-15
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 18/115 (15%)

Query: 73  TSVPVRVAHEL---LQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFV 127
           + + VR  H++   L A      LDVR  + F+  H   A N+P             +  
Sbjct: 4   SQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS-----------RLE 52

Query: 128 EEVSTRF-RKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLP 180
            E+  R  R+   I V       + +AA  L + G++ +  + GG + WR  G  
Sbjct: 53  LEIHARVPRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGE 107

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 57.0 bits (137), Expect = 3e-10
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC 144
           +A    LD R  +E+      G I+VP          + +  V E++        +IV C
Sbjct: 144 RAEAVILDARRFDEYQTMSIPGGISVPG--------AELVLRVAELAP--DPRTRVIVNC 193

Query: 145 QSGKRSMMAATDLLN--GFAGITDIAGGFAAWRQNG 178
               RS++    LLN      +  +  G   W   G
Sbjct: 194 AGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAG 229

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 51.3 bits (122), Expect = 3e-08
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC 144
                 LDVRTPEE+ AGH  G+ + P     G  + +             +   +++  
Sbjct: 280 DRTTYLLDVRTPEEYEAGHLPGSRSTP-----GGQLVQETD-----HVASVRGARLVLVD 329

Query: 145 QSGKRSMMAATDL 157
             G R+ M+A+ L
Sbjct: 330 DDGVRANMSASWL 342

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 75.4 bits (186), Expect = 4e-18
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 16/123 (13%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRY--LDVRTPEEFSAGH---ATGAINVPYMYRVGSGMT 121
            A      +  + A++LLQ       +DVR P+E  A          ++        G  
Sbjct: 17  AAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSR------GK- 69

Query: 122 KNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLP 180
             L+ +    +       ++V C++  R+ +A   L   GF  I +  GG   W + GLP
Sbjct: 70  --LEPLLA-KSGLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLP 126

Query: 181 TEP 183
           +  
Sbjct: 127 SLD 129

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 75.2 bits (185), Expect = 6e-18
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 15/95 (15%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ--SGK 148
           +DVR  E +   H   AI++P             K  E+ + R  K   II  C   +  
Sbjct: 37  VDVRDAEAYKECHIPTAISIPGN-----------KINEDTTKRLSKEKVIITYCWGPACN 85

Query: 149 RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
            +  AA      GF  + ++ GG   WR+     E
Sbjct: 86  GATKAAAKFAQLGFR-VKELIGGIEYWRKENGEVE 119

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 73.4 bits (181), Expect = 7e-18
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 22/96 (22%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-----KHDEII 141
              ++DVR PE++   H  GAIN+P               ++EV  R       K+D + 
Sbjct: 1   AEHWIDVRVPEQYQQEHVQGAINIP---------------LKEVKERIATAVPDKNDTVK 45

Query: 142 VGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ 176
           V C +G++S  A   L   G+  + +  GG      
Sbjct: 46  VYCNAGRQSGQAKEILSEMGYTHVENA-GGLKDIAM 80

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score = 69.8 bits (171), Expect = 5e-16
 Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 14/114 (12%)

Query: 77  VRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPY-----MYRVGSGMTKNLKFVEE 129
           V     LL +G  +  LDVR   E        A+++P             + K   + E+
Sbjct: 5   VTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEK 64

Query: 130 VSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAG------ITDIAGGFAAWRQ 176
             T+      I V C+ G  S  A   L     A       + D+ GG  AW  
Sbjct: 65  QGTQEGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAA 118

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 72.7 bits (178), Expect = 1e-15
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 13/88 (14%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR   E++ GH + A++VP               + E    F K+D I V CQSG RS
Sbjct: 391 LDVRNDNEWNNGHLSQAVHVP------------HGKLLETDLPFNKNDVIYVHCQSGIRS 438

Query: 151 MMAATDLL-NGFAGITDIAGGFAAWRQN 177
            +A   L   G+  I ++  G+   + +
Sbjct: 439 SIAIGILEHKGYHNIINVNEGYKDIQLS 466

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 67.4 bits (164), Expect = 6e-15
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 25/125 (20%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMY-----RVGSGMTKN------- 123
            +++   L      ++DVRT  E+   H   AIN+P         VG+            
Sbjct: 6   VIKIEKALKLDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQ 65

Query: 124 --LKFVEEVSTRFRK---------HDEIIVGCQSGKRSMMAATDL-LNGFAGITDIAGGF 171
               +V                   + +I   + G RS      L   G   +  + GG+
Sbjct: 66  KGFDYVSYKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVN-VYQLEGGY 124

Query: 172 AAWRQ 176
            A+R 
Sbjct: 125 KAYRN 129

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 66.9 bits (163), Expect = 1e-14
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 19/121 (15%)

Query: 73  TSVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           + +       L +  +  + DVR  E    GH  G+++        SG   +   +  + 
Sbjct: 28  SYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYA------SGSFDDK--ISHLV 79

Query: 132 TRFRKHDEIIVGC-QSGKRSMMAATDLLN---------GFAGITDIAGGFAAWRQNGLPT 181
              +  D ++     S  R    A  L+N         G   I  +  GF  W  +G P 
Sbjct: 80  QNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPV 139

Query: 182 E 182
            
Sbjct: 140 C 140

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 20/110 (18%)

Query: 70  GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE 129
           G   +V       +++ G   +DVR P E   G   G+IN+P               ++E
Sbjct: 486 GFVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIP---------------LDE 530

Query: 130 VSTRFR---KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWR 175
           +  R        +I + CQ G R  +AA  L+  G+  + ++ GGF  + 
Sbjct: 531 LRDRLEEVPVDKDIYITCQLGMRGYVAARMLMEKGYK-VKNVDGGFKLYG 579

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 57.0 bits (137), Expect = 8e-11
 Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 17/99 (17%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH  GA+N+           ++    + +     K   ++  C+ S +R
Sbjct: 48  IDCRYPYEYEGGHIKGAVNLHM-----EEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSER 102

Query: 150 SMMAATDLLN-----------GFAGITDIAGGFAAWRQN 177
                  +              +  +  + GG+  +   
Sbjct: 103 GPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK 141

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 22/102 (21%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-- 135
             ++         LDVR P E   G   GA+N+P               V+E+  R    
Sbjct: 477 FDQIDNLSEDQLLLDVRNPGELQNGGLEGAVNIP---------------VDELRDRMHEL 521

Query: 136 -KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWR 175
            K  EII+  Q G R  +A   L+ NG+    ++ GG+  ++
Sbjct: 522 PKDKEIIIFSQVGLRGNVAYRQLVNNGYR-ARNLIGGYRTYK 562

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 56.2 bits (135), Expect = 3e-10
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH   A+N+P      S + K+      +     K   +I  C+ S +R
Sbjct: 69  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLD----KRVILIFHCEFSSER 124

Query: 150 SMMAATDLLN-----------GFAGITDIAGGFAAWRQN 177
                  +              +  +  + GG+  +   
Sbjct: 125 GPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ 163

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 11/98 (11%)

Query: 91  LDVRTPEEFSAGHATGAINVPY--MYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC-QSG 147
           +DVR   ++  GH     +  Y  + +    + +    + E     R    +I  C  S 
Sbjct: 57  VDVR-GSDYMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNVIFHCMLSQ 115

Query: 148 KRSMMAATDLLN-------GFAGITDIAGGFAAWRQNG 178
           +R   AA  LL            +  + GGF+ W+   
Sbjct: 116 QRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVY 153

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 52.4 bits (125), Expect = 6e-09
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 16/99 (16%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH  GA+N+         +         V    +K   I+  C+ S +R
Sbjct: 82  IDCRYPYEYLGGHIQGALNLY----SQEELFNFFLKKPIVPLDTQKRIIIVFHCEFSSER 137

Query: 150 SMMAATDLLN-----------GFAGITDIAGGFAAWRQN 177
                  L              +  +  + GG+  +   
Sbjct: 138 GPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPE 176

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 19/110 (17%)

Query: 81  HELLQAGHRY-----LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
            ELL           +D R   +   G    +IN+P +        K  K + E      
Sbjct: 13  VELLDNPDSLVKAAVIDCR-DSDRDCGFIVNSINMPTISCTEEMYEKLAKTLFE-----E 66

Query: 136 KHDEIIVGC-QSGKRSMMAATDLLN-------GFAGITDIAGGFAAWRQN 177
           K +  +  C QS  R+   A                +  + GG+ A+   
Sbjct: 67  KKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHM 116

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH   A+N+P      S + K+            K   +I   + S +R
Sbjct: 49  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS----PIAPCSLDKRVILIFHSEFSSER 104

Query: 150 SMMAATDL------LN-----GFAGITDIAGGFAAWRQN 177
                  +      +N      +  +  + GG+  +   
Sbjct: 105 GPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ 143

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Length = 271

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 15/85 (17%)

Query: 79  VAHELLQAGHRYLDVRTPEEFS--------AGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           +   L  A     D R+P+E+          GH  GA+N  +   +       L+   ++
Sbjct: 154 LLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRA--LRIRTDI 211

Query: 131 STRF-----RKHDEIIVGCQSGKRS 150
           + R          EI+  CQ+  RS
Sbjct: 212 AGRLEELGITPDKEIVTHCQTHHRS 236

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A Length = 230

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 34/136 (25%), Positives = 43/136 (31%), Gaps = 39/136 (28%)

Query: 72  PTSVPVRVAHELL------QAGHRYLDVRTPEEFS----------AGHATGAINVPYMYR 115
            T V  ++  + L            LDVR+PEEF            G   G+ N P    
Sbjct: 110 RTEVVAKLRRDWLLTADEAARHPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLE-- 167

Query: 116 VGSGMTKNLKFVEEVSTRFR-----KHDEIIVGCQSGKRSMMAATDLLNGFAGITDIA-- 168
                     F+                E+ V C SG RS  A    +    G+      
Sbjct: 168 ---------LFLSP-EGLLERLGLQPGQEVGVYCHSGARS--AVAFFVLRSLGV-RARNY 214

Query: 169 -GGFAAWRQNGLPTEP 183
            G    W Q GLPTEP
Sbjct: 215 LGSMHEWLQEGLPTEP 230

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A Length = 318

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 27/111 (24%)

Query: 63  RGNLEAVGVPTSVPVRVAHELLQA--GHRYLDVRTPEEFS----------------AGHA 104
                 V    +       ++L        +DVR+PEE++                AGH 
Sbjct: 166 CTGYPVVQRNDAPIRAFRDDVLAILGAQPLIDVRSPEEYTGKRTHMPDYPEEGALRAGHI 225

Query: 105 TGAINVPYMYRVGSGMTKN--LKFVEEVSTRFR---KHDEIIVGCQSGKRS 150
             A+++P+    G    ++   +  EE+   +      D+ +V C+ G+RS
Sbjct: 226 PTAVHIPW----GKAADESGRFRSREELERLYDFINPDDQTVVYCRIGERS 272

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Length = 285

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 40/154 (25%)

Query: 63  RGNLEAVGVPTSVPV------RVAHELLQAGHRYLDVRTPEEFS---------------- 100
            G  E      S+            ++ +     +DVR+P+E+                 
Sbjct: 134 PGRYEVPYRDESIRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALR 193

Query: 101 AGHATGAINVPYMYRVGSGMTKNLKF--VEEVSTRFR-----KHDEIIVGCQSGKRSMMA 153
           AGH  GA N+P+       +  +  F   EE+   +      K  +I+V C+  +RS  +
Sbjct: 194 AGHIPGAKNIPW----AKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRIAERS--S 247

Query: 154 ATDL-LNGFAGITDIA---GGFAAW-RQNGLPTE 182
            +   L    G   +    G +  W    G+P  
Sbjct: 248 HSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIA 281

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Length = 277

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 38/122 (31%)

Query: 91  LDVRTPEEFS----------------AGHATGAINVPYMYRVGSGMTKN--LKFVEEVST 132
           +DVR+P+EFS                 GH  GAINVP+         ++   K  EE++ 
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPW----SRAANEDGTFKSDEELAK 216

Query: 133 RFRKH-----DEIIVGCQSGKRS---MMAATDLLNGFAGITDIA---GGFAAW-RQNGLP 180
            +         E I  C+ G+RS        +LL    G  ++    G +  +    G P
Sbjct: 217 LYADAGLDNSKETIAYCRIGERSSHTWFVLRELL----GHQNVKNYDGSWTEYGSLVGAP 272

Query: 181 TE 182
            E
Sbjct: 273 IE 274

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 40.1 bits (93), Expect = 9e-05
 Identities = 11/118 (9%), Positives = 32/118 (27%), Gaps = 22/118 (18%)

Query: 81  HELLQAGHRY---LDVRTPEEFSAGHATGAINVPY-MYRVGSGMTKNLKFVEEVSTRFRK 136
           + ++   +     +D R  +++       +++VP      G   +     + + S    K
Sbjct: 28  YTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWK 87

Query: 137 H----DEIIVGCQSGKRSMMAATDLLNGF--------------AGITDIAGGFAAWRQ 176
                + +++         +     L                      + GG+  W  
Sbjct: 88  KRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLL 145

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 40.1 bits (93), Expect = 9e-05
 Identities = 11/122 (9%), Positives = 30/122 (24%), Gaps = 21/122 (17%)

Query: 76  PVRVAHELLQAGHRYL--DVRTPEEFSAGHATGAINVPY-MYRVGSGMTKNLKFVEEVST 132
              +   +       +  D R  +++       +++VP      G   +     + + S 
Sbjct: 19  AKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSK 78

Query: 133 RFRKH----DEIIVGCQSGKRSMMAATDLLNGF--------------AGITDIAGGFAAW 174
              K     + +++         +     L                      + GG+  W
Sbjct: 79  DTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENW 138

Query: 175 RQ 176
             
Sbjct: 139 LL 140

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A Length = 153

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 81  HELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV------- 130
             LL++G      +D R   E++  H   AIN+     +   + ++   + E+       
Sbjct: 12  VALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKH 71

Query: 131 STRFRKHDEIIVGCQSGKRSMMAATD---------LLNGFAGITDIAGGFAAWRQ 176
                   +++V  QS +     ++D         L   F  +  +AGGFA + +
Sbjct: 72  KVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSR 126

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2 Length = 280

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 27/126 (21%)

Query: 79  VAHELLQAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKNLKFV 127
           V     +   + +D R    F+            GH  GA+NVP+   V  G  K     
Sbjct: 159 VLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKT---T 215

Query: 128 EEVSTRFRKH-----DEIIVGCQSGKRSMMAATDLL-NGFAGITDIA---GGFAAW-RQN 177
           +E+   F          IIV C SG   + AA  LL      + ++    G ++ W  + 
Sbjct: 216 DELDAIFFGRGVSYDKPIIVSCGSG---VTAAVVLLALATLDVPNVKLYDGAWSEWGARA 272

Query: 178 GLPTEP 183
            LP EP
Sbjct: 273 DLPVEP 278

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1 Length = 154

 Score = 37.4 bits (86), Expect = 6e-04
 Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 22/127 (17%)

Query: 72  PTSVPVRVAHELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE 128
             S  V   +E L+ G+     +D R  E + + H   AINV     +   + K    V 
Sbjct: 15  AISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVR 74

Query: 129 EVST---------RFRKHDEIIV---GCQSGKRSMMAATDLLNGFAGITD-------IAG 169
            + T         R    D +++          +    + L      + D       + G
Sbjct: 75  ALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEG 134

Query: 170 GFAAWRQ 176
           GF+ ++ 
Sbjct: 135 GFSKFQA 141

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens} Length = 158

 Score = 37.4 bits (86), Expect = 9e-04
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 18/104 (17%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRV-------GSGMTKNLKFVEEVSTRFRKH--DEII 141
           +D R   E++  H  GA+++    ++       G     +L    E    F++    EII
Sbjct: 38  IDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRIFSKEII 97

Query: 142 VGCQSGK--RSMMAATDLLNGFAGITD-------IAGGFAAWRQ 176
           V  ++      +M +  L      +         + GG ++++Q
Sbjct: 98  VYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSSFKQ 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.95
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.95
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.95
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.94
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.94
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.94
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.94
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.93
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.93
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.93
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.93
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.92
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.92
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.91
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.9
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.9
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.89
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.89
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.89
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.89
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.89
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.89
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.89
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.88
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.88
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.88
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.88
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.88
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.87
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.87
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.87
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.86
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.86
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.86
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.86
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.85
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.85
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.85
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.85
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.85
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.85
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.85
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.85
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.84
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.83
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.83
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.83
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.83
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.82
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.82
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.81
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.8
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.8
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.79
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.79
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.78
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.75
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.73
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.73
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.72
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.72
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.71
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.71
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.45
2f46_A	156	Hypothetical protein; structural genomics, joint c	98.28
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	95.54
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	94.63
1xri_A	151	AT1G05000; structural genomics, protein structure	93.72
3ezz_A	144	Dual specificity protein phosphatase 4; alpha/beta	93.21
1v8c_A	168	MOAD related protein; riken structural genomics/pr	93.19
2nt2_A	145	Protein phosphatase slingshot homolog 2; alpha/bet	93.07
1yz4_A	160	DUSP15, dual specificity phosphatase-like 15 isofo	91.72
2hcm_A	164	Dual specificity protein phosphatase; structural g	91.63
1fpz_A	212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	91.57
3s4e_A	144	Dual specificity protein phosphatase 19; PTP, prot	90.9
1wrm_A	165	Dual specificity phosphatase 22; DSP, JNK, hydrola	90.88
2r0b_A	154	Serine/threonine/tyrosine-interacting protein; str	90.83
2esb_A	188	Dual specificity protein phosphatase 18; alpha/bet	90.03
3f81_A	183	Dual specificity protein phosphatase 3; hydrolase,	89.83
2wgp_A	190	Dual specificity protein phosphatase 14; MKP6, DUS	89.45
3rgo_A	157	Protein-tyrosine phosphatase mitochondrial 1; phos	88.93
1zzw_A	149	Dual specificity protein phosphatase 10; MKP, PTP,	88.72
2e0t_A	151	Dual specificity phosphatase 26; conserved hypothe	88.55
1ywf_A	296	Phosphotyrosine protein phosphatase PTPB; four str	88.45
2g6z_A	211	Dual specificity protein phosphatase 5; alpha/beta	87.94
2pq5_A	205	Dual specificity protein phosphatase 13; hydrolase	87.3
2y96_A	219	Dual specificity phosphatase DUPD1; hydrolase; 2.3	86.82
3emu_A	161	Leucine rich repeat and phosphatase domain contain	86.12
2hxp_A	155	Dual specificity protein phosphatase 9; human phos	85.43
3s4o_A	167	Protein tyrosine phosphatase-like protein; structu	85.01
3rz2_A	189	Protein tyrosine phosphatase type IVA 1; tyrosine	85.0
2oud_A	177	Dual specificity protein phosphatase 10; A central	84.49
2jgn_A	185	DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp	83.87
2q05_A	195	Late protein H1, dual specificity protein phosphat	82.41
2i6j_A	161	Ssoptp, sulfolobus solfataricus protein tyrosine p	80.38

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.95  E-value=3.5e-28  Score=174.93  Aligned_cols=116  Identities=66%  Similarity=1.100  Sum_probs=101.7

Q ss_pred             cCCCCcccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCc
Q 030104           68 AVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG  147 (183)
Q Consensus        68 ~~~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g  147 (183)
                      .......|+++++.++++++++|||||++.||..||||||+|||+......+...+.+++++....++++++|||||.+|
T Consensus        13 ~~~~~~~is~~e~~~~l~~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G   92 (129)
T 1tq1_A           13 ESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSG   92 (129)
T ss_dssp             CSCCCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSC
T ss_pred             hcCCCcccCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCC
Confidence            34566789999999988877899999999999999999999999965544455555677788777788999999999999


Q ss_pred             hHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          148 KRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       148 ~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .||..+++.|. .||++|++|+||+.+|.++|+|+++
T Consensus        93 ~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  129 (129)
T 1tq1_A           93 GRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA  129 (129)
T ss_dssp             SHHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC-
T ss_pred             cHHHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCCC
Confidence            99999999999 9999999999999999999999874

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.95  E-value=1.7e-28  Score=170.24  Aligned_cols=98  Identities=27%  Similarity=0.417  Sum_probs=86.5

Q ss_pred             cccCHHHHHHHHhCC--CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHH
Q 030104           73 TSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s  150 (183)
                      ..|+++++++++.++  ++|||||++.||..||||||+|||++            .+......++++++|||||.+|.||
T Consensus         2 k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~ivv~C~~G~rS   69 (103)
T 3iwh_A            2 KSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMD------------TIPDNLNSFNKNEIYYIVCAGGVRS   69 (103)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGG------------GGGGCGGGCCTTSEEEEECSSSSHH
T ss_pred             CCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCccc------------chhhhhhhhcCCCeEEEECCCCHHH
Confidence            468999999877554  89999999999999999999999994            3444556788999999999999999


Q ss_pred             HHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          151 MMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       151 ~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ..++..|. .||++ ++|.||+.+|.++|+|+++
T Consensus        70 ~~aa~~L~~~G~~~-~~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           70 AKVVEYLEANGIDA-VNVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             HHHHHHHHTTTCEE-EEETTHHHHHCSSSCBCCC
T ss_pred             HHHHHHHHHcCCCE-EEecChHHHHHHCCCccee
Confidence            99999999 99965 4699999999999999985

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.95  E-value=2.7e-27  Score=165.36  Aligned_cols=98  Identities=30%  Similarity=0.429  Sum_probs=90.7

Q ss_pred             CcccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHH
Q 030104           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~  151 (183)
                      ...|+++++.+++++ ++|||||++.||..||||||+|+|+            ..+......++++++||+||.+|.||.
T Consensus         3 ~~~is~~el~~~l~~-~~iiDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~ivvyC~~G~rs~   69 (108)
T 3gk5_A            3 YRSINAADLYENIKA-YTVLDVREPFELIFGSIANSINIPI------------SELREKWKILERDKKYAVICAHGNRSA   69 (108)
T ss_dssp             CCEECHHHHHHTTTT-CEEEECSCHHHHTTCBCTTCEECCH------------HHHHHHGGGSCTTSCEEEECSSSHHHH
T ss_pred             ccEeCHHHHHHHHcC-CEEEECCCHHHHhcCcCCCCEEcCH------------HHHHHHHHhCCCCCeEEEEcCCCcHHH
Confidence            457899999998877 9999999999999999999999999            566777788899999999999999999


Q ss_pred             HHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          152 MAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       152 ~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .+++.|+ .|| +|++|+||+.+|.++|.|+++
T Consensus        70 ~aa~~L~~~G~-~v~~l~GG~~~W~~~~~~~~~  101 (108)
T 3gk5_A           70 AAVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVL  101 (108)
T ss_dssp             HHHHHHHTTTC-CEEEETTHHHHHHHTTCCCBC
T ss_pred             HHHHHHHHcCC-CEEEEcCcHHHHHHcCCCCCC
Confidence            9999999 999 999999999999999999874

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.94  E-value=1.4e-27  Score=164.51  Aligned_cols=96  Identities=25%  Similarity=0.405  Sum_probs=85.9

Q ss_pred             cccCHHHHHHHHh--CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHH
Q 030104           73 TSVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (183)
Q Consensus        73 ~~i~~~~~~~~~~--~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s  150 (183)
                      +.|+++++.++++  ++++|||||++.||..||||||+|+|+.            .+......++++++||+||.+|.||
T Consensus         2 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~ivvyC~~g~rs   69 (100)
T 3foj_A            2 ESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMN------------SIPDNLNYFNDNETYYIICKAGGRS   69 (100)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGG------------GGGGCGGGSCTTSEEEEECSSSHHH
T ss_pred             CccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHH------------HHHHHHHhCCCCCcEEEEcCCCchH
Confidence            4688999999884  3499999999999999999999999994            3444556678999999999999999


Q ss_pred             HHHHHHHH-cCCCCeeEccccHHHhhhCCCCC
Q 030104          151 MMAATDLL-NGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       151 ~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      ..+++.|+ .|| +|++|+||+.+|.++|+|+
T Consensus        70 ~~a~~~L~~~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           70 AQVVQYLEQNGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             HHHHHHHHTTTC-EEEEETTHHHHHCSSSCBC
T ss_pred             HHHHHHHHHCCC-CEEEecccHHHHHHcCCCC
Confidence            99999999 999 9999999999999999986

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.94  E-value=1.4e-26  Score=161.51  Aligned_cols=98  Identities=31%  Similarity=0.506  Sum_probs=88.3

Q ss_pred             CcccCHHHHHHHHhC-CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHH
Q 030104           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s  150 (183)
                      ...|+++++.+++++ +++|||||++.||..||||||+|||+            ..+......++++++|||||.+|.+|
T Consensus         4 ~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~ivvyc~~g~rs   71 (108)
T 1gmx_A            4 FECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTN------------DTLGAFMRDNDFDTPVMVMCYHGNSS   71 (108)
T ss_dssp             CEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCH------------HHHHHHHHHSCTTSCEEEECSSSSHH
T ss_pred             ccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCH------------HHHHHHHHhcCCCCCEEEEcCCCchH
Confidence            457899999988875 48999999999999999999999999            45555666688999999999999999


Q ss_pred             HHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          151 MMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       151 ~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ..+++.|+ .||++|++|+||+.+|.++ +|++
T Consensus        72 ~~a~~~L~~~G~~~v~~l~GG~~~W~~~-~p~~  103 (108)
T 1gmx_A           72 KGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE  103 (108)
T ss_dssp             HHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGG
T ss_pred             HHHHHHHHHcCCceEEEecCCHHHHHHh-CCcc
Confidence            99999999 9999999999999999998 8875

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.94  E-value=1.2e-26  Score=161.53  Aligned_cols=94  Identities=31%  Similarity=0.533  Sum_probs=77.8

Q ss_pred             HHHHHHh---CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHH
Q 030104           79 VAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAAT  155 (183)
Q Consensus        79 ~~~~~~~---~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~  155 (183)
                      +++++++   .+++|||||++.||..||||||+|||+.           ++.......++++++|||||.+|.+|..+++
T Consensus         2 el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~l~~~~~~~l~~~~~ivvyc~~g~rs~~a~~   70 (106)
T 3hix_A            2 VLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQTSQAVN   70 (106)
T ss_dssp             -----------CCEEEECSCHHHHHTCEETTCEECCGG-----------GHHHHHHHHSCTTSCEEEECSSHHHHHHHHH
T ss_pred             hHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHH-----------HHHHHHHhcCCCCCeEEEEECCCChHHHHHH
Confidence            4555554   2489999999999999999999999995           3444445678899999999999999999999


Q ss_pred             HHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          156 DLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       156 ~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .|+ .||++|++|+||+.+|.++|+|+++
T Consensus        71 ~L~~~G~~~v~~l~GG~~~W~~~g~~~~~   99 (106)
T 3hix_A           71 LLRSAGFEHVSELKGGLAAWKAIGGPTEL   99 (106)
T ss_dssp             HHHHTTCSCEEECTTHHHHHHHTTCCEEE
T ss_pred             HHHHcCCcCEEEecCCHHHHHHCCCCCCC
Confidence            999 9999999999999999999999763

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1e-25  Score=163.72  Aligned_cols=113  Identities=23%  Similarity=0.306  Sum_probs=95.0

Q ss_pred             CCCcccCHHHHHHHHh---CCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHh--cCCCCCeEEEEc
Q 030104           70 GVPTSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVGC  144 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~---~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~--~l~~~~~ivv~c  144 (183)
                      .....|+++++.++++   ++++|||||++.||..||||||+|||+..+ ......+.+.+...+.  .++++++|||||
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ivvyC   98 (139)
T 3d1p_A           20 SNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSH-PDAFALDPLEFEKQIGIPKPDSAKELIFYC   98 (139)
T ss_dssp             CCCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTC-TTGGGSCHHHHHHHHSSCCCCTTSEEEEEC
T ss_pred             CCcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHh-hhhccCCHHHHHHHHhccCCCCCCeEEEEC
Confidence            4567899999999886   358999999999999999999999999744 2333334455555554  367889999999


Q ss_pred             CCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          145 QSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       145 ~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .+|.||..+++.|. .||++|++|+||+.+|.++|+|+.+
T Consensus        99 ~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A           99 ASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             SSSHHHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             CCCchHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            99999999999999 9999999999999999999999863

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.93  E-value=5.9e-26  Score=165.81  Aligned_cols=97  Identities=30%  Similarity=0.507  Sum_probs=86.5

Q ss_pred             cCHHHHHHHHhC---CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHH
Q 030104           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (183)
Q Consensus        75 i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~  151 (183)
                      |++++++++++.   +++|||||++.||..||||||+|||+.           ++.......++++++|||||.+|.+|.
T Consensus         2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~l~~~~~~~l~~~~~ivvyC~~g~rs~   70 (141)
T 3ilm_A            2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQTS   70 (141)
T ss_dssp             CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGG-----------GHHHHHHTTSCTTSEEEEECSSHHHHH
T ss_pred             CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHH-----------HHHHHHHhcCCCCCeEEEEECCChHHH
Confidence            788999988863   389999999999999999999999994           333444466889999999999999999


Q ss_pred             HHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          152 MAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       152 ~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      .+++.|+ .||++|++|+||+.+|.++|+|++
T Consensus        71 ~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  102 (141)
T 3ilm_A           71 QAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE  102 (141)
T ss_dssp             HHHHHHHHTTCCSEEECTTHHHHHHHTTCCEE
T ss_pred             HHHHHHHHcCCCCEEEecCHHHHHHHCCCCcc
Confidence            9999999 999999999999999999999975

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.93  E-value=1.6e-25  Score=162.48  Aligned_cols=102  Identities=27%  Similarity=0.451  Sum_probs=87.6

Q ss_pred             CCCcccCHHHHHHHHh--C-CCEEEEcCChhhHhc-cCCCCceecCcccccCCCCCCCHHHHHHHH--------hcCCCC
Q 030104           70 GVPTSVPVRVAHELLQ--A-GHRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVS--------TRFRKH  137 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~--~-~~~lIDvR~~~e~~~-ghIpgAvnip~~~~~~~~~~~~~~~~~~~~--------~~l~~~  137 (183)
                      .....|+++++.++++  + +++|||||++.||.. ||||||+|||+..            +....        ..++++
T Consensus        19 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~------------l~~~~~~~~~~~~~~~~~~   86 (139)
T 2hhg_A           19 SSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGM------------LEFWIDPQSPYAKPIFQED   86 (139)
T ss_dssp             TTSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGG------------HHHHHCTTSTTCCGGGGSS
T ss_pred             HhcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHH------------HHHhcCccchhhhccCCCC
Confidence            4557899999999887  3 489999999999998 9999999999852            22211        235788


Q ss_pred             CeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          138 DEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       138 ~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ++|||||.+|.||..+++.|+ .||++|++|+||+.+|.++|+|+++
T Consensus        87 ~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  133 (139)
T 2hhg_A           87 KKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEA  133 (139)
T ss_dssp             SEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC-
T ss_pred             CeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCeec
Confidence            999999999999999999999 9999999999999999999999863

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.93  E-value=1.1e-25  Score=163.47  Aligned_cols=103  Identities=24%  Similarity=0.387  Sum_probs=89.0

Q ss_pred             CCCcccCHHHHHHHHh-C-CCEEEEcCChhhHhc-cC--CCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEc
Q 030104           70 GVPTSVPVRVAHELLQ-A-GHRYLDVRTPEEFSA-GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC  144 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~-~-~~~lIDvR~~~e~~~-gh--IpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c  144 (183)
                      .....|+++++.++++ + +++|||||++.||.. ||  ||||+|||+..+.        +  ......++++++|||||
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~--------~--~~~~~~l~~~~~ivvyC   89 (137)
T 1qxn_A           20 ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLE--------P--LLAKSGLDPEKPVVVFC   89 (137)
T ss_dssp             HSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSH--------H--HHHHHCCCTTSCEEEEC
T ss_pred             ccCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhh--------h--HHhhccCCCCCeEEEEc
Confidence            3456799999999887 4 499999999999999 99  9999999985211        1  11345678899999999


Q ss_pred             CCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          145 QSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       145 ~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      .+|.||..+++.|+ .||++|++|+||+.+|.++|+|++
T Consensus        90 ~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  128 (137)
T 1qxn_A           90 KTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSL  128 (137)
T ss_dssp             CSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEE
T ss_pred             CCCcHHHHHHHHHHHcCCcceEEEcCcHHHHHHCCCCcc
Confidence            99999999999999 999999999999999999999976

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.92  E-value=2.2e-25  Score=159.20  Aligned_cols=98  Identities=23%  Similarity=0.279  Sum_probs=88.2

Q ss_pred             cccCHHHHHHHHhC---CCEEEEcCChhhH-hccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104           73 TSVPVRVAHELLQA---GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (183)
Q Consensus        73 ~~i~~~~~~~~~~~---~~~lIDvR~~~e~-~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (183)
                      ..|+++++.+++++   +++|||||++.|| ..||||||+|||+            ..+......++++++|||||.+|.
T Consensus        15 ~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~------------~~l~~~~~~l~~~~~ivvyC~~g~   82 (124)
T 3flh_A           15 LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPA------------KDLATRIGELDPAKTYVVYDWTGG   82 (124)
T ss_dssp             TEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCH------------HHHHHHGGGSCTTSEEEEECSSSS
T ss_pred             ceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCH------------HHHHHHHhcCCCCCeEEEEeCCCC
Confidence            46899999888764   2899999999998 9999999999999            566777778899999999999999


Q ss_pred             H--HHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          149 R--SMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       149 ~--s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +  |..+++.|+ .||+ |++|+||+.+|.++|+|+++
T Consensus        83 r~~s~~a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~~  119 (124)
T 3flh_A           83 TTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEH  119 (124)
T ss_dssp             CSHHHHHHHHHHHHTCE-EEEETTHHHHHHHTTCCEEC
T ss_pred             chHHHHHHHHHHHcCCe-EEEeCCcHHHHHHcCCCCCc
Confidence            8  899999999 9996 99999999999999999864

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.92  E-value=5.3e-26  Score=154.82  Aligned_cols=92  Identities=24%  Similarity=0.307  Sum_probs=76.2

Q ss_pred             cccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHH
Q 030104           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~  152 (183)
                      ..|+++++.++++++++|||||++.||..||||||+|+|+.            .+......+++ ++||+||.+|.||..
T Consensus         2 ~~is~~~l~~~~~~~~~liDvR~~~e~~~ghi~gAi~ip~~------------~l~~~~~~l~~-~~ivvyC~~g~rs~~   68 (94)
T 1wv9_A            2 RKVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVPLE------------KIQKGEHGLPR-RPLLLVCEKGLLSQV   68 (94)
T ss_dssp             CEECGGGHHHHHHTTCEEEECCCC--CCSCCSSCCEECCHH------------HHTTTCCCCCS-SCEEEECSSSHHHHH
T ss_pred             CcCCHHHHHHHHHCCCEEEECCCHHHHhcccCCCCEECCHH------------HHHHHHHhCCC-CCEEEEcCCCChHHH
Confidence            35788888888877899999999999999999999999983            33444455778 999999999999999


Q ss_pred             HHHHHH-cCCCCeeEccccHHHhhhCC
Q 030104          153 AATDLL-NGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       153 a~~~L~-~G~~~v~~l~GG~~~W~~~g  178 (183)
                      +++.|+ .||+ |++|+||+.+|.++|
T Consensus        69 a~~~L~~~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           69 AALYLEAEGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             HHHHHHHHTCC-EEEETTGGGCC----
T ss_pred             HHHHHHHcCCc-EEEEcccHHHHHhCc
Confidence            999999 9998 999999999998765

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.91  E-value=4.8e-25  Score=161.49  Aligned_cols=99  Identities=24%  Similarity=0.362  Sum_probs=85.5

Q ss_pred             cccCHHHHHHHHhCC---CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCc--
Q 030104           73 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG--  147 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g--  147 (183)
                      ..|+++++.++++++   ++|||||++.||..||||||+|||+..+.           ......++++++|||||.+|  
T Consensus        16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~-----------~~~~~~l~~~~~ivvyC~~g~~   84 (144)
T 3nhv_A           16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKIN-----------EDTTKRLSKEKVIITYCWGPAC   84 (144)
T ss_dssp             TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCS-----------TTTTTTCCTTSEEEEECSCTTC
T ss_pred             cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHh-----------HHHHhhCCCCCeEEEEECCCCc
Confidence            457999999888754   89999999999999999999999995322           12334578899999999999  


Q ss_pred             hHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          148 KRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       148 ~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .+|..+++.|+ .|| +|++|+||+.+|.++|+|+++
T Consensus        85 ~rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~g~pv~~  120 (144)
T 3nhv_A           85 NGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEVEG  120 (144)
T ss_dssp             CHHHHHHHHHHHTTC-EEEEEESHHHHHHHTTCCCBS
T ss_pred             cHHHHHHHHHHHCCC-eEEEeCCcHHHHHHCCCCccC
Confidence            69999999999 999 699999999999999999863

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.90  E-value=2e-24  Score=151.12  Aligned_cols=86  Identities=19%  Similarity=0.313  Sum_probs=75.4

Q ss_pred             hCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHh--cCCCCCeEEEEcCCchHHHHHHHHHH-cCC
Q 030104           85 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLL-NGF  161 (183)
Q Consensus        85 ~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~  161 (183)
                      +++++|||||++.||..||||||+|+|+.            .+.....  .++++++|||||.+|.||..+++.|+ .||
T Consensus        14 ~~~~~liDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~   81 (110)
T 2k0z_A           14 FNDFIVVDVRELDEYEELHLPNATLISVN------------DQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHELGY   81 (110)
T ss_dssp             GGGSEEEEEECHHHHHHSBCTTEEEEETT------------CHHHHHHHHHSCSSSCEEEECSSSHHHHHHHHHHHHTTC
T ss_pred             cCCeEEEECCCHHHHhcCcCCCCEEcCHH------------HHHHHHHhcccCCCCEEEEEeCCCchHHHHHHHHHHCCC
Confidence            34589999999999999999999999994            2222332  37889999999999999999999999 999


Q ss_pred             CCeeEccccHHHhhhCCCCCCC
Q 030104          162 AGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       162 ~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ++ ++|+||+.+|.++|+|+++
T Consensus        82 ~~-~~l~GG~~~W~~~g~p~~~  102 (110)
T 2k0z_A           82 TP-YYLEGNVYDFEKYGFRMVY  102 (110)
T ss_dssp             CC-EEEESCGGGTTTTTCCCBC
T ss_pred             CE-EEecCCHHHHHHCCCcEec
Confidence            99 9999999999999999863

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.90  E-value=2.8e-23  Score=166.13  Aligned_cols=137  Identities=17%  Similarity=0.286  Sum_probs=105.0

Q ss_pred             eEEccCCccccccccccCCccc----------cCCCCcccCHHHHHHHHhCC-CEEEEcCChhhHh--------ccCCCC
Q 030104           46 IGFISSKILSFCPKASLRGNLE----------AVGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFS--------AGHATG  106 (183)
Q Consensus        46 ~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~--------~ghIpg  106 (183)
                      +..+.+++.+|...........          .......++++++.++++++ ++|||||++.||.        .|||||
T Consensus       110 v~~L~GG~~~w~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpg  189 (271)
T 1e0c_A          110 YHYLNGGLTAWLAEDRPLSRELPAPAGGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPG  189 (271)
T ss_dssp             EEEETTHHHHHHHTTCCCBCCCCCCCCSCCCCCCCSTTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTT
T ss_pred             eEEecCCHHHHHHcCCCccCCCCCCCCCCccccCCccccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCC
Confidence            3478899999965321111000          01122457899999888654 8999999999999        999999


Q ss_pred             ceecCcccccCC--CCCCCHHHHHHHHh--cCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhC-CCC
Q 030104          107 AINVPYMYRVGS--GMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQN-GLP  180 (183)
Q Consensus       107 Avnip~~~~~~~--~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~-g~p  180 (183)
                      |+|+|+..+...  .+... +.++..+.  .++++++|||||.+|.||..+++.|+ .||++|++|+||+.+|.++ |+|
T Consensus       190 A~~ip~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~~p  268 (271)
T 1e0c_A          190 AVNFEWTAAMDPSRALRIR-TDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTP  268 (271)
T ss_dssp             CEECCGGGGEEGGGTTEEC-TTHHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCC
T ss_pred             ceeccHHHhCCCCCCCCCH-HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCC
Confidence            999999765422  22222 44555555  57889999999999999999999999 9999999999999999998 999


Q ss_pred             CCC
Q 030104          181 TEP  183 (183)
Q Consensus       181 v~~  183 (183)
                      +++
T Consensus       269 v~~  271 (271)
T 1e0c_A          269 VEL  271 (271)
T ss_dssp             CBC
T ss_pred             CcC
Confidence            874

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.89  E-value=1.7e-23  Score=153.59  Aligned_cols=108  Identities=27%  Similarity=0.411  Sum_probs=84.6

Q ss_pred             CcccCHHHHHHHHh--CCCEEEEcCChhhHhc-cCC------CCceecCcccccCCCCCCCHHHHHHHHhc-----CCCC
Q 030104           72 PTSVPVRVAHELLQ--AGHRYLDVRTPEEFSA-GHA------TGAINVPYMYRVGSGMTKNLKFVEEVSTR-----FRKH  137 (183)
Q Consensus        72 ~~~i~~~~~~~~~~--~~~~lIDvR~~~e~~~-ghI------pgAvnip~~~~~~~~~~~~~~~~~~~~~~-----l~~~  137 (183)
                      ...|+++++.++++  .+++|||||++.||.. |||      |||+|||+.. .....  ...+...+...     ++++
T Consensus         4 ~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~-~~~~~--~~~~~~~l~~~l~~~~~~~~   80 (148)
T 2fsx_A            4 AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT-SDGTH--NDNFLAELRDRIPADADQHE   80 (148)
T ss_dssp             SEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC-TTSCB--CTTHHHHHHHHCC-------
T ss_pred             cccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec-ccccc--CHHHHHHHHHHHhhccCCCC
Confidence            45789999998886  3599999999999997 999      9999999964 21111  12233333322     4788


Q ss_pred             CeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccH------------HHhhhCCCCCC
Q 030104          138 DEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGF------------AAWRQNGLPTE  182 (183)
Q Consensus       138 ~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~------------~~W~~~g~pv~  182 (183)
                      ++|||||++|.||..+++.|+ .||++|++|+||+            .+|.++|+|++
T Consensus        81 ~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~~~W~~~glp~~  138 (148)
T 2fsx_A           81 RPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLPWR  138 (148)
T ss_dssp             CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCSSSTTTTTCSEE
T ss_pred             CEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhhhhhhccccccccHHHcCCCCC
Confidence            999999999999999999999 9999999999999            68888999875

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.89  E-value=2.6e-23  Score=167.06  Aligned_cols=138  Identities=22%  Similarity=0.330  Sum_probs=100.4

Q ss_pred             eEEccCCccccccccccCCccc----------cCCCCcccCHHHHHHHHh-CCCEEEEcCChhhH-----------hccC
Q 030104           46 IGFISSKILSFCPKASLRGNLE----------AVGVPTSVPVRVAHELLQ-AGHRYLDVRTPEEF-----------SAGH  103 (183)
Q Consensus        46 ~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~-~~~~lIDvR~~~e~-----------~~gh  103 (183)
                      +..+.+++.+|.........-.          .......|+++++.++++ .+++|||||++.||           ..||
T Consensus       115 v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~gh  194 (280)
T 1urh_A          115 VSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGH  194 (280)
T ss_dssp             EEEETTHHHHHHHTTCCCBBSCCCCCCCCCCCCCCGGGBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSS
T ss_pred             EEEecCCHHHHHHCCCcccCCCCCCCCCccccccCcccEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCcc
Confidence            4678899999975321111000          011123589999988876 45999999999999           6899


Q ss_pred             CCCceecCcccccCCCCCCCHHHHHHHHh--cCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh-CCC
Q 030104          104 ATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ-NGL  179 (183)
Q Consensus       104 IpgAvnip~~~~~~~~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~-~g~  179 (183)
                      ||||+|||+..+...+...+.+.+...+.  .++++++|||||.+|.||..++..|. .||++|++|+||+.+|.+ .++
T Consensus       195 IpgA~nip~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~  274 (280)
T 1urh_A          195 IPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADL  274 (280)
T ss_dssp             CTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-------
T ss_pred             CCCceEeeHHHhhcCCccCCHHHHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHhcCCCC
Confidence            99999999987665455566677777666  46889999999999999999999999 999999999999999987 499


Q ss_pred             CCCC
Q 030104          180 PTEP  183 (183)
Q Consensus       180 pv~~  183 (183)
                      |+++
T Consensus       275 Pv~~  278 (280)
T 1urh_A          275 PVEP  278 (280)
T ss_dssp             ----
T ss_pred             Ccee
Confidence            9864

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.89  E-value=4.5e-24  Score=157.62  Aligned_cols=106  Identities=19%  Similarity=0.261  Sum_probs=86.8

Q ss_pred             CCCcccCHHHHHHHHhC-CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcC-Cc
Q 030104           70 GVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SG  147 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~-~g  147 (183)
                      .....|+++++.+++++ +++|||||++.||..||||||+|||+..+.        +.+.++...++++++|||||+ +|
T Consensus        25 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~--------~~~~~l~~~~~~~~~iVvyC~~~G   96 (152)
T 1t3k_A           25 RSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFD--------DKISHLVQNVKDKDTLVFHSALSQ   96 (152)
T ss_dssp             SSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSS--------TTHHHHHHTCCSCCEEEESSSCCS
T ss_pred             CCCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHH--------HHHHHHHHhcCCCCEEEEEcCCCC
Confidence            34567788888777653 589999999999999999999999995321        234555555678899999999 99


Q ss_pred             hHHHHHHHHH--------H-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          148 KRSMMAATDL--------L-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       148 ~~s~~a~~~L--------~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .++..++..|        + .||++|++|+||+.+|.++|+|+++
T Consensus        97 ~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  141 (152)
T 1t3k_A           97 VRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCR  141 (152)
T ss_dssp             SSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCC
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCcccc
Confidence            9988777765        5 7999999999999999999999863

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.89  E-value=7e-23  Score=166.03  Aligned_cols=137  Identities=15%  Similarity=0.243  Sum_probs=106.8

Q ss_pred             eEEccCCccccccccccCCccc----------cCCCCcccCHHHHHHHHh-CCCEEEEcCChhhH------------hcc
Q 030104           46 IGFISSKILSFCPKASLRGNLE----------AVGVPTSVPVRVAHELLQ-AGHRYLDVRTPEEF------------SAG  102 (183)
Q Consensus        46 ~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~-~~~~lIDvR~~~e~------------~~g  102 (183)
                      +..+.+++.+|...........          .......++.+++.++++ .+++|||||++.||            ..|
T Consensus       123 V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~g  202 (296)
T 1rhs_A          123 VSVLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSG  202 (296)
T ss_dssp             EEEETTHHHHHHHTTCCCBCSCCCCCCCCCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCC
T ss_pred             EEEcCCCHHHHHHcCCccccCCCCCCCCCcccCCCcceEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCc
Confidence            4578899999975322111000          001124688999988775 45899999999999            789


Q ss_pred             CCCCceecCcccccC-CCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh-C
Q 030104          103 HATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ-N  177 (183)
Q Consensus       103 hIpgAvnip~~~~~~-~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~-~  177 (183)
                      |||||+|||+.++.. .+...+.+.++..+..  ++++++|||||.+|.||..++..|. +||++|++|+|||.+|.. .
T Consensus       203 hIpgA~nip~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~  282 (296)
T 1rhs_A          203 HIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRA  282 (296)
T ss_dssp             EETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHS
T ss_pred             cCCCCEeecHHHhcCCCCcCCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCC
Confidence            999999999976653 3445566677766653  6889999999999999999999999 999999999999999988 7


Q ss_pred             CCCCC
Q 030104          178 GLPTE  182 (183)
Q Consensus       178 g~pv~  182 (183)
                      ++|++
T Consensus       283 ~~pv~  287 (296)
T 1rhs_A          283 PPETW  287 (296)
T ss_dssp             CGGGE
T ss_pred             CCCcc
Confidence            88875

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.89  E-value=1.5e-23  Score=149.48  Aligned_cols=106  Identities=25%  Similarity=0.271  Sum_probs=81.6

Q ss_pred             ccCHHHHHHHHhCC--CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHH---h------cCCCCCeEEE
Q 030104           74 SVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS---T------RFRKHDEIIV  142 (183)
Q Consensus        74 ~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~---~------~l~~~~~ivv  142 (183)
                      .|+++++.++++++  ++|||||++.||..||||||+|||+..+...    ....+....   .      .++++++|||
T Consensus         2 ~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~ivv   77 (127)
T 3i2v_A            2 RVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERR----DAESLKLLKEAIWEEKQGTQEGAAVPIYV   77 (127)
T ss_dssp             EECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTT----CHHHHHHHHHHHHHHHTTC---CCEEEEE
T ss_pred             CCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhh----hhhhHHHHHHHHhhhcccccCCCCCeEEE
Confidence            57899999888643  8999999999999999999999999643211    111111111   1      1234559999


Q ss_pred             EcCCchHHHHHHHHHH-c------CCCCeeEccccHHHhhhCCCCCCC
Q 030104          143 GCQSGKRSMMAATDLL-N------GFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       143 ~c~~g~~s~~a~~~L~-~------G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ||.+|.+|..+++.|. .      ||.+|++|+||+.+|.++..|..|
T Consensus        78 ~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~~~p  125 (127)
T 3i2v_A           78 ICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGTFP  125 (127)
T ss_dssp             ECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCTTSC
T ss_pred             EcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCCCCC
Confidence            9999999999999999 8      688999999999999998777653

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.89  E-value=1.1e-22  Score=162.58  Aligned_cols=112  Identities=19%  Similarity=0.171  Sum_probs=94.8

Q ss_pred             CcccCHHHHHHHHhC-CCEEEEcCChhhHhccCCCCceecCcccccCC-----CCCCCHHHHHHHHhc--CCCCCeEEEE
Q 030104           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--FRKHDEIIVG  143 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~-----~~~~~~~~~~~~~~~--l~~~~~ivv~  143 (183)
                      ...|+++++.+++++ +++|||||++.||..||||||+|+|+..+...     ++..+.+.+...+..  ++++++||||
T Consensus         8 ~~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvy   87 (271)
T 1e0c_A            8 PLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVY   87 (271)
T ss_dssp             CSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEE
Confidence            457899999988854 58999999999999999999999999754322     344555666666555  6889999999


Q ss_pred             cCCch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          144 CQSGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       144 c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      |++|. +|.++++.|+ .||++|++|+||+.+|.++|+|+++
T Consensus        88 c~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~  129 (271)
T 1e0c_A           88 DDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSR  129 (271)
T ss_dssp             CSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             cCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccC
Confidence            99988 9999999999 9999999999999999999999863

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.89  E-value=9.2e-23  Score=166.01  Aligned_cols=137  Identities=15%  Similarity=0.285  Sum_probs=108.1

Q ss_pred             eEEccCCccccccccccCCcc----------ccCCCCcccCHHHHHHHHh-CCCEEEEcCChhhH-----------hccC
Q 030104           46 IGFISSKILSFCPKASLRGNL----------EAVGVPTSVPVRVAHELLQ-AGHRYLDVRTPEEF-----------SAGH  103 (183)
Q Consensus        46 ~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~-~~~~lIDvR~~~e~-----------~~gh  103 (183)
                      +..+.+|+.+|..........          ........++.+++.++++ .+++|||||++.||           ..||
T Consensus       138 V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~Gh  217 (302)
T 3olh_A          138 VSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGH  217 (302)
T ss_dssp             EEEETTHHHHHHHSCCC-CCSCCCCCCCCCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCCC
T ss_pred             EEECCCCHHHHHHcCCCcccCCCCcCcCccccccCccceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCcc
Confidence            577899999997532211110          0011223578899988775 45899999999999           7899


Q ss_pred             CCCceecCcccccC-CCCCCCHHHHHHHHh--cCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCC
Q 030104          104 ATGAINVPYMYRVG-SGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGL  179 (183)
Q Consensus       104 IpgAvnip~~~~~~-~~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~  179 (183)
                      ||||+|||+..+.. .+...+.+.+++.+.  .++++++||+||.+|.||..++..|. +||++|++|+|||.+|.++++
T Consensus       218 IpGAiniP~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~~~~  297 (302)
T 3olh_A          218 IPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRAR  297 (302)
T ss_dssp             CTTCEECCGGGGBCSSSCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHHHHHHHC
T ss_pred             CCCceecCHHHhcCCCCccCCHHHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHHHhhccC
Confidence            99999999987653 345667777777776  37888999999999999999999999 999999999999999999998


Q ss_pred             CCC
Q 030104          180 PTE  182 (183)
Q Consensus       180 pv~  182 (183)
                      |..
T Consensus       298 P~~  300 (302)
T 3olh_A          298 PED  300 (302)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            864

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.88  E-value=4.1e-23  Score=148.24  Aligned_cols=103  Identities=25%  Similarity=0.398  Sum_probs=78.1

Q ss_pred             CcccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCC----------C-----------CCCCHHHHHHH
Q 030104           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------G-----------MTKNLKFVEEV  130 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~----------~-----------~~~~~~~~~~~  130 (183)
                      ...|+++++.+  +++++|||||++.||..||||||+|||+......          +           .......+...
T Consensus         4 ~~~i~~~el~~--~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (134)
T 3g5j_A            4 MSVIKIEKALK--LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKDIYLQ   81 (134)
T ss_dssp             -CEECHHHHTT--CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGHHHHHHH
T ss_pred             ccccCHHHHHh--cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhcccccccccHHHHHHH
Confidence            35678888766  5569999999999999999999999999521100          0           00000123333


Q ss_pred             HhcCCCC-CeEEEEc-CCchHHHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104          131 STRFRKH-DEIIVGC-QSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       131 ~~~l~~~-~~ivv~c-~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~  177 (183)
                      ...++++ ++||||| .+|.||..+++.|+ .|| +|++|+||+.+|.+.
T Consensus        82 ~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~  130 (134)
T 3g5j_A           82 AAELALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAYRNF  130 (134)
T ss_dssp             HHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHHHHHHH
T ss_pred             HHHhccCCCeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHHHHHHH
Confidence            3446677 9999999 59999999999999 999 999999999999874

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.88  E-value=2.8e-22  Score=161.33  Aligned_cols=138  Identities=20%  Similarity=0.341  Sum_probs=107.4

Q ss_pred             eEEccCCccccccccccCCc-c-c---------cCCCCcccCHHHHHHHHh----CCCEEEEcCChhhHh----------
Q 030104           46 IGFISSKILSFCPKASLRGN-L-E---------AVGVPTSVPVRVAHELLQ----AGHRYLDVRTPEEFS----------  100 (183)
Q Consensus        46 ~~~l~~~~~~~~~~~~~~~~-~-~---------~~~~~~~i~~~~~~~~~~----~~~~lIDvR~~~e~~----------  100 (183)
                      +..+.+++.+|......... . .         .......|+++++.++++    ++..|||||++.||.          
T Consensus       108 v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~  187 (285)
T 1uar_A          108 VRLMNGGRQKWVEEGRPLTTEVPSYPPGRYEVPYRDESIRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYP  187 (285)
T ss_dssp             EEEETTHHHHHHHHTCCCBCCCCCCCCCCCCCCCCCGGGEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC-------
T ss_pred             eEEecCCHHHHHHCCCcccCCCCcccCCCcccccCCcceEEcHHHHHHHHhhcccCCCcEEEcCCccceeeecccccccc
Confidence            45788899999642211110 0 0         011123589999998884    456899999999998          


Q ss_pred             ------ccCCCCceecCcccccC-CCCCCCHHHHHHHHhc--CCCCCeEEEEcCCchHHHHHHHHHH--cCCCCeeEccc
Q 030104          101 ------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL--NGFAGITDIAG  169 (183)
Q Consensus       101 ------~ghIpgAvnip~~~~~~-~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~g~~s~~a~~~L~--~G~~~v~~l~G  169 (183)
                            .||||||+|+|+..+.. .+...+.+.++..+..  ++++++|||||++|.||..+++.|+  .||++|++|+|
T Consensus       188 ~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~G  267 (285)
T 1uar_A          188 QEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDG  267 (285)
T ss_dssp             -CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESS
T ss_pred             ccccccCCcCCCccccCHHHhcCCCCcCCCHHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCc
Confidence                  89999999999976552 3455677778887776  7889999999999999999999997  89999999999


Q ss_pred             cHHHhh-hCCCCCCC
Q 030104          170 GFAAWR-QNGLPTEP  183 (183)
Q Consensus       170 G~~~W~-~~g~pv~~  183 (183)
                      |+.+|. ..|+|+++
T Consensus       268 G~~~W~~~~g~pv~~  282 (285)
T 1uar_A          268 SWTEWGNLVGVPIAK  282 (285)
T ss_dssp             HHHHHTTSTTCCCBC
T ss_pred             hHHHHhcCCCCCccc
Confidence            999998 78999864

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.88  E-value=2.6e-22  Score=164.46  Aligned_cols=137  Identities=20%  Similarity=0.317  Sum_probs=109.2

Q ss_pred             eEEccCCccccccccccCCc-cc--------c---CCCCcccCHHHHHHHHhCCCEEEEcCChhhHhc------------
Q 030104           46 IGFISSKILSFCPKASLRGN-LE--------A---VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSA------------  101 (183)
Q Consensus        46 ~~~l~~~~~~~~~~~~~~~~-~~--------~---~~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~------------  101 (183)
                      +..+.+++..|......... ..        .   ......++.+++.++++++ +|||||++.||..            
T Consensus       140 V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~l~~~-~liDvR~~~e~~~~~~~~~~~~~~~  218 (318)
T 3hzu_A          140 VRLLNGGRDLWLAERRETTLDVPTKTCTGYPVVQRNDAPIRAFRDDVLAILGAQ-PLIDVRSPEEYTGKRTHMPDYPEEG  218 (318)
T ss_dssp             EEEETTHHHHHHHTTCCCBCCCCCCCCCCCCCCCCCCTTTBCCHHHHHHHTTTS-CEEECSCHHHHHTSCSSCTTSCSCS
T ss_pred             eEEccCCHHHHhhcCCCcccCCCCCCCCccccccCCCccccccHHHHHHhhcCC-eEEecCCHHHhcccccCcccccccc
Confidence            46788999999753221111 00        0   1122357899999988777 9999999999998            


Q ss_pred             ----cCCCCceecCccccc-CCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH--cCCCCeeEccccHHHh
Q 030104          102 ----GHATGAINVPYMYRV-GSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL--NGFAGITDIAGGFAAW  174 (183)
Q Consensus       102 ----ghIpgAvnip~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~--~G~~~v~~l~GG~~~W  174 (183)
                          ||||||+|||+..++ .++.+.+.+.++..+..++++++||+||++|.||..++..|.  .||++|++|+|||.+|
T Consensus       219 ~~~~GhIpGA~niP~~~~~~~~g~~~~~~~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~W  298 (318)
T 3hzu_A          219 ALRAGHIPTAVHIPWGKAADESGRFRSREELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEW  298 (318)
T ss_dssp             CSSCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHHH
T ss_pred             CCcCcCCCCeeecCHHHhcCCCCcCCCHHHHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHHH
Confidence                999999999997655 345566777888888778999999999999999999999996  7999999999999999


Q ss_pred             hh-CCCCCCC
Q 030104          175 RQ-NGLPTEP  183 (183)
Q Consensus       175 ~~-~g~pv~~  183 (183)
                      .+ .|+|+++
T Consensus       299 ~~~~g~Pv~~  308 (318)
T 3hzu_A          299 GNAVRVPIVA  308 (318)
T ss_dssp             TTSTTCCCBC
T ss_pred             hcCCCCCccc
Confidence            95 6999864

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.88  E-value=2e-22  Score=165.10  Aligned_cols=112  Identities=16%  Similarity=0.198  Sum_probs=93.8

Q ss_pred             CcccCHHHHHHHHhC-CCEEEEcCChhh-HhccCCCCceecCcccccC---CCCCCCHHHHHHHHhc--CCCCCeEEEEc
Q 030104           72 PTSVPVRVAHELLQA-GHRYLDVRTPEE-FSAGHATGAINVPYMYRVG---SGMTKNLKFVEEVSTR--FRKHDEIIVGC  144 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~lIDvR~~~e-~~~ghIpgAvnip~~~~~~---~~~~~~~~~~~~~~~~--l~~~~~ivv~c  144 (183)
                      ...|+++++++++++ +++|||||++.| |..||||||+|+|+...+.   .....+.+.+...+..  ++++++|||||
T Consensus        39 ~~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~lgi~~~~~vVvyc  118 (318)
T 3hzu_A           39 ERLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQFAELMDRKGIARDDTVVIYG  118 (318)
T ss_dssp             GGEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             CceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhccCcccCCCCHHHHHHHHHHcCCCCCCeEEEEC
Confidence            457999999998865 489999999876 9999999999999753221   2344455666666665  78899999999


Q ss_pred             CCch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          145 QSGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       145 ~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ++|. +|.++++.|+ +||++|++|+||+.+|.++|+|+++
T Consensus       119 ~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  159 (318)
T 3hzu_A          119 DKSNWWAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTL  159 (318)
T ss_dssp             SGGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBC
T ss_pred             CCCCccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCccc
Confidence            9887 9999999999 9999999999999999999999863

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.88  E-value=4.3e-23  Score=137.74  Aligned_cols=76  Identities=33%  Similarity=0.564  Sum_probs=67.5

Q ss_pred             CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcCCchHHHHHHHHHH-cCCCCe
Q 030104           88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLL-NGFAGI  164 (183)
Q Consensus        88 ~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v  164 (183)
                      ++|||||++.||..||||||+|+|+            ..+...+..+  +++++||+||++|.+|..+++.|+ .||++|
T Consensus         2 ~~liDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v   69 (85)
T 2jtq_A            2 EHWIDVRVPEQYQQEHVQGAINIPL------------KEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHV   69 (85)
T ss_dssp             EEEEECSCHHHHTTEEETTCEECCH------------HHHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSE
T ss_pred             CEEEECCCHHHHHhCCCCCCEEcCH------------HHHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCE
Confidence            5799999999999999999999999            4445555554  788999999999999999999999 999999


Q ss_pred             eEccccHHHhhh
Q 030104          165 TDIAGGFAAWRQ  176 (183)
Q Consensus       165 ~~l~GG~~~W~~  176 (183)
                      +++ ||+.+|..
T Consensus        70 ~~l-GG~~~w~~   80 (85)
T 2jtq_A           70 ENA-GGLKDIAM   80 (85)
T ss_dssp             EEE-EETTTCCS
T ss_pred             Eec-cCHHHHhc
Confidence            999 99999964

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.87  E-value=2.6e-22  Score=161.27  Aligned_cols=111  Identities=19%  Similarity=0.195  Sum_probs=93.9

Q ss_pred             CcccCHHHHHHHHhC-CCEEEEcC----------ChhhHhccCCCCceecCcccccCC-----CCCCCHHHHHHHHhc--
Q 030104           72 PTSVPVRVAHELLQA-GHRYLDVR----------TPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR--  133 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~lIDvR----------~~~e~~~ghIpgAvnip~~~~~~~-----~~~~~~~~~~~~~~~--  133 (183)
                      ...|+++++.+++++ +++|||||          ++.||..||||||+|+|+..+...     ++..+.+.+...+..  
T Consensus         3 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~g   82 (280)
T 1urh_A            3 TWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELG   82 (280)
T ss_dssp             CCEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTT
T ss_pred             CceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence            357899999988864 58999999          788999999999999999754321     344556666666665  


Q ss_pred             CCCCCeEEEEcCCchH-HHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          134 FRKHDEIIVGCQSGKR-SMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       134 l~~~~~ivv~c~~g~~-s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ++++++|||||++|.+ |.++++.|+ +||++|++|+||+.+|.++|+|++
T Consensus        83 i~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  133 (280)
T 1urh_A           83 VNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLE  133 (280)
T ss_dssp             CCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCB
T ss_pred             CCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCccc
Confidence            5789999999999998 999999999 999999999999999999999986

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.87  E-value=9.4e-22  Score=157.68  Aligned_cols=137  Identities=21%  Similarity=0.303  Sum_probs=103.9

Q ss_pred             eEEccCCccccccccccCCcc-cc----------CCCCcccCHHHHHHHHhCCCEEEEcCChhhHhc-------------
Q 030104           46 IGFISSKILSFCPKASLRGNL-EA----------VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSA-------------  101 (183)
Q Consensus        46 ~~~l~~~~~~~~~~~~~~~~~-~~----------~~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~-------------  101 (183)
                      +..+.+++.+|.......... ..          ......++.+++.++++++. |||||++.||..             
T Consensus       106 v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~-liDvR~~~e~~~~~~~~~~~~~~~~  184 (277)
T 3aay_A          106 VKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKN-LIDVRSPDEFSGKILAPAHLPQEQS  184 (277)
T ss_dssp             EEEETTHHHHHHHTTCCCBCCCCCCCCCCCCCCCCCGGGEECHHHHHHTTTTSE-EEECSCHHHHHTSCCC-----CCCC
T ss_pred             EEEecCCHHHHHHcCCccccCCCCcCCCCccccCcccchhcCHHHHHHhcCCCC-EEEeCChHHeeeeeccccccccccc
Confidence            457889999996532111100 00          00111367889888876655 999999999985             


Q ss_pred             ---cCCCCceecCcccccC-CCCCCCHHHHHHHHh--cCCCCCeEEEEcCCchHHHHHHHHHH--cCCCCeeEccccHHH
Q 030104          102 ---GHATGAINVPYMYRVG-SGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLL--NGFAGITDIAGGFAA  173 (183)
Q Consensus       102 ---ghIpgAvnip~~~~~~-~~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~~s~~a~~~L~--~G~~~v~~l~GG~~~  173 (183)
                         ||||||+|||+..... .+...+.+.++..+.  .++++++||+||.+|.||..+++.|.  +||++|++|+||+.+
T Consensus       185 ~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~  264 (277)
T 3aay_A          185 QRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTE  264 (277)
T ss_dssp             SCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHH
T ss_pred             ccCCcCCCceecCHHHhcCCCCcCCCHHHHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHHH
Confidence               9999999999975442 344556667777665  37889999999999999999999997  799999999999999


Q ss_pred             hhh-CCCCCCC
Q 030104          174 WRQ-NGLPTEP  183 (183)
Q Consensus       174 W~~-~g~pv~~  183 (183)
                      |.+ .|+|+++
T Consensus       265 W~~~~g~pv~~  275 (277)
T 3aay_A          265 YGSLVGAPIEL  275 (277)
T ss_dssp             HTTSTTCCCBC
T ss_pred             HhcCCCCCCcc
Confidence            998 8999864

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.87  E-value=2e-22  Score=145.60  Aligned_cols=105  Identities=22%  Similarity=0.327  Sum_probs=85.3

Q ss_pred             CcccCHHHHHHHHh-C-CCEEEEcCChhhHhc-cCC------CCceecCcccccCCCCCCCHHHHHHHHhcC--CCCCeE
Q 030104           72 PTSVPVRVAHELLQ-A-GHRYLDVRTPEEFSA-GHA------TGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEI  140 (183)
Q Consensus        72 ~~~i~~~~~~~~~~-~-~~~lIDvR~~~e~~~-ghI------pgAvnip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~i  140 (183)
                      ...|+++++.++++ + +++|||||++.||.. +|+      |||+|||+...      ....++..+...+  +++++|
T Consensus         4 ~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~------~~~~~~~~l~~~~~~~~~~~i   77 (134)
T 1vee_A            4 GSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGE------DKPGFLKKLSLKFKDPENTTL   77 (134)
T ss_dssp             SCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGG------GHHHHHHHHHTTCSCGGGCEE
T ss_pred             CCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccc------cChhHHHHHHHHhCCCCCCEE
Confidence            45689999998886 3 589999999999985 443      79999998521      1223444444433  678999


Q ss_pred             EEEcCCchHHHHHHHHHH-cCCCCeeEccccH---HHhhhCCCCCC
Q 030104          141 IVGCQSGKRSMMAATDLL-NGFAGITDIAGGF---AAWRQNGLPTE  182 (183)
Q Consensus       141 vv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~---~~W~~~g~pv~  182 (183)
                      ||||++|.||..++..|+ .||++|++|.||+   .+|.++|+|++
T Consensus        78 vv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~  123 (134)
T 1vee_A           78 YILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWI  123 (134)
T ss_dssp             EEECSSSTTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEE
T ss_pred             EEEeCCCCcHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCC
Confidence            999999999999999999 9999999999999   78999999986

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.86  E-value=6.1e-22  Score=169.89  Aligned_cols=121  Identities=26%  Similarity=0.448  Sum_probs=101.0

Q ss_pred             ceeEEccCCccccccccccCCccccCCCCcccCHHHHHHHHhC-CCEEEEcCChhhHhccCCCCceecCcccccCCCCCC
Q 030104           44 DNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTK  122 (183)
Q Consensus        44 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~  122 (183)
                      .+..++. ++.+|.....      .......++++++.+++++ +.+|||||++.||..||||||+|+|+          
T Consensus       352 ~v~~~l~-G~~~W~~~g~------~~~~~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~----------  414 (474)
T 3tp9_A          352 DVVDWTD-PAAVDRAAPD------DVASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPL----------  414 (474)
T ss_dssp             CEEEEEC-GGGGTTCCGG------GEECCEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCH----------
T ss_pred             ceEEecC-cHHHHHhccc------ccccccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCH----------
Confidence            3444455 8888874211      1223467899999988765 59999999999999999999999999          


Q ss_pred             CHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          123 NLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       123 ~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                        ..+......++++++||+||.+|.||..++..|+ .||++|++|+||+.+|.++|+|+++
T Consensus       415 --~~l~~~~~~l~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~~W~~~g~p~~~  474 (474)
T 3tp9_A          415 --SKLAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVEA  474 (474)
T ss_dssp             --HHHTTTGGGSCSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHHHTTCCCBC
T ss_pred             --HHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHHHHHhCCCCCCC
Confidence              4555556678899999999999999999999999 9999999999999999999999974

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.86  E-value=1.6e-21  Score=169.86  Aligned_cols=126  Identities=19%  Similarity=0.313  Sum_probs=104.6

Q ss_pred             eEEccC-CccccccccccCCccccCCCCcccCHHHHHHHHhC-CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCC
Q 030104           46 IGFISS-KILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN  123 (183)
Q Consensus        46 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~  123 (183)
                      +..+.+ ++.+|..................++++++.+++++ +.+|||||++.||..||||||+|+|.           
T Consensus       349 v~~l~G~G~~~w~~~g~p~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA~~ip~-----------  417 (539)
T 1yt8_A          349 VAVLDGLSEADFSERGAWSAPLPRQPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLR-----------  417 (539)
T ss_dssp             EEEECSCCGGGCCBCSSCCCCCCCCCCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCG-----------
T ss_pred             EEEecCCChHHHHHhhccccCCCCCCcCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCchhCCH-----------
Confidence            445788 99999754322222222345578999999998875 48999999999999999999999998           


Q ss_pred             HHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          124 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       124 ~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                       ..+...+..++++++|||||.+|.||..++..|+ .||++|++|+||+.+|.++|+|+++
T Consensus       418 -~~l~~~l~~l~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  477 (539)
T 1yt8_A          418 -SQLKQALERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTED  477 (539)
T ss_dssp             -GGHHHHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBC
T ss_pred             -HHHHHHHHhCCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHHHHHhCCCCccc
Confidence             4455556667889999999999999999999999 9999999999999999999999863

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.86  E-value=9.7e-22  Score=157.60  Aligned_cols=111  Identities=16%  Similarity=0.238  Sum_probs=91.7

Q ss_pred             cccCHHHHHHHHhC-CCEEEEcCC-hhhHhccCCCCceecCcccccC---CCCCCCHHHHHHHHhc--CCCCCeEEEEcC
Q 030104           73 TSVPVRVAHELLQA-GHRYLDVRT-PEEFSAGHATGAINVPYMYRVG---SGMTKNLKFVEEVSTR--FRKHDEIIVGCQ  145 (183)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~lIDvR~-~~e~~~ghIpgAvnip~~~~~~---~~~~~~~~~~~~~~~~--l~~~~~ivv~c~  145 (183)
                      ..|+++++.+++++ +++|||||+ +.||..||||||+|+|+...+.   .+...+.+.+...+..  ++++++|||||+
T Consensus         6 ~~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvyc~   85 (277)
T 3aay_A            6 VLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGG   85 (277)
T ss_dssp             HEECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCSSSSSBCCHHHHHHHHHHHTCCTTSEEEEECS
T ss_pred             ceEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence            46889999888765 489999998 8999999999999999864332   1233445566666655  788999999999


Q ss_pred             Cch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          146 SGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       146 ~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +|. +|.++++.|+ .||++|++|+||+.+|.++|+|+++
T Consensus        86 ~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  125 (277)
T 3aay_A           86 NNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSS  125 (277)
T ss_dssp             GGGHHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBC
T ss_pred             CCCchHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCcccc
Confidence            875 7889999999 9999999999999999999999863

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.86  E-value=2.9e-21  Score=156.46  Aligned_cols=112  Identities=19%  Similarity=0.205  Sum_probs=93.0

Q ss_pred             CcccCHHHHHHHHhC-----CCEEEEcC--------ChhhHhccCCCCceecCcccccCC-----CCCCCHHHHHHHHhc
Q 030104           72 PTSVPVRVAHELLQA-----GHRYLDVR--------TPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVSTR  133 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-----~~~lIDvR--------~~~e~~~ghIpgAvnip~~~~~~~-----~~~~~~~~~~~~~~~  133 (183)
                      ...|+++++++++++     +++|||||        ++.||..||||||+|+|+..+...     .+..+.+.+...+..
T Consensus         7 ~~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~l~~   86 (296)
T 1rhs_A            7 RALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGS   86 (296)
T ss_dssp             CSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHH
T ss_pred             CceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            467999999998875     58999999        689999999999999999743321     234455566666554


Q ss_pred             --CCCCCeEEEEcCC--chH-HHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          134 --FRKHDEIIVGCQS--GKR-SMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       134 --l~~~~~ivv~c~~--g~~-s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                        ++++++|||||.+  |.+ +.++++.|+ +||++|++|+||+.+|.++|+|+++
T Consensus        87 lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  142 (296)
T 1rhs_A           87 LGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTS  142 (296)
T ss_dssp             TTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             cCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCcccc
Confidence              6788999999999  876 779999999 9999999999999999999999863

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.85  E-value=1.6e-21  Score=144.83  Aligned_cols=101  Identities=17%  Similarity=0.291  Sum_probs=82.8

Q ss_pred             CCCcccCHHHHHHHHhC-------CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHh---cC-CCCC
Q 030104           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RF-RKHD  138 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~---~l-~~~~  138 (183)
                      .....|+++++.+++++       +++|||||++.||..||||||+|||+.           +.......   .+ ++++
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~-----------~~~~~~~~~~~~~~~~~~   88 (161)
T 1c25_A           20 QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHME-----------EEVEDFLLKKPIVPTDGK   88 (161)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHTTTSCCCCCTTS
T ss_pred             CCcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChh-----------HHHHHHHhhhhhccCCCC
Confidence            44578999999998875       589999999999999999999999994           23333322   22 5677


Q ss_pred             eE--EEEcC-CchHHHHHHHHHH-c----------CCCCeeEccccHHHhhhCCCCC
Q 030104          139 EI--IVGCQ-SGKRSMMAATDLL-N----------GFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       139 ~i--vv~c~-~g~~s~~a~~~L~-~----------G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      +|  |+||. +|.||..++..|+ .          ||++|++|+||+.+|.+++.|+
T Consensus        89 ~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~  145 (161)
T 1c25_A           89 RVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSY  145 (161)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGG
T ss_pred             CeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccc
Confidence            76  57899 9999999999987 6          9999999999999999887664

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.85  E-value=2.9e-21  Score=145.33  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=81.0

Q ss_pred             CCCcccCHHHHHHHHhC-------CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHh---cCC--CC
Q 030104           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RFR--KH  137 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~---~l~--~~  137 (183)
                      .....|+++++.+++++       +++|||||++.||..||||||+|||+.           +.......   .++  ++
T Consensus        21 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~-----------~l~~~~~~~~~~~~~~~~   89 (175)
T 2a2k_A           21 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLD   89 (175)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHSSCCCC----
T ss_pred             CCCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChh-----------HHHHHhhhhhhhccccCC
Confidence            45678999999998875       489999999999999999999999994           22222222   133  67


Q ss_pred             CeEEE--EcC-CchHHHHHHHHHH-c----------CCCCeeEccccHHHhhhCCCCC
Q 030104          138 DEIIV--GCQ-SGKRSMMAATDLL-N----------GFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       138 ~~ivv--~c~-~g~~s~~a~~~L~-~----------G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      ++|||  ||+ +|.||..++..|+ .          ||++|++|+||+.+|.+++.++
T Consensus        90 ~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~  147 (175)
T 2a2k_A           90 KRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNF  147 (175)
T ss_dssp             CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGG
T ss_pred             CCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccc
Confidence            88855  598 9999999999887 5          9999999999999999988765

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.85  E-value=1e-21  Score=158.10  Aligned_cols=110  Identities=17%  Similarity=0.213  Sum_probs=91.3

Q ss_pred             cccCHHHHHHHHhC-CCEEEEcC-ChhhHhccCCCCceecCcccccC---CCCCCCHHHHHHHHhc--CCCCCeEEEEcC
Q 030104           73 TSVPVRVAHELLQA-GHRYLDVR-TPEEFSAGHATGAINVPYMYRVG---SGMTKNLKFVEEVSTR--FRKHDEIIVGCQ  145 (183)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~lIDvR-~~~e~~~ghIpgAvnip~~~~~~---~~~~~~~~~~~~~~~~--l~~~~~ivv~c~  145 (183)
                      ..|+++++++++++ +++||||| ++.||..||||||+|+|+...+.   .....+.+.+...+..  ++++++|||||+
T Consensus         8 ~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ivvyc~   87 (285)
T 1uar_A            8 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLYGD   87 (285)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECH
T ss_pred             ceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccCCcccCCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence            57899999988875 48999999 68999999999999999863221   2233344555665554  588999999999


Q ss_pred             Cch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          146 SGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       146 ~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +|. +|.++++.|+ .||++|++|+||+.+|.++|+|++
T Consensus        88 ~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  126 (285)
T 1uar_A           88 KNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLT  126 (285)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCB
T ss_pred             CCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCccc
Confidence            998 7999999999 999999999999999999999875

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.85  E-value=9.7e-22  Score=144.73  Aligned_cols=108  Identities=19%  Similarity=0.172  Sum_probs=78.8

Q ss_pred             CcccCHHHHHHHHhC---CCEEEEcCChhhHhccCCCCceecCcccccCC----CCCCCHHHH-HHHHh--cCCCCCeEE
Q 030104           72 PTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----GMTKNLKFV-EEVST--RFRKHDEII  141 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~----~~~~~~~~~-~~~~~--~l~~~~~iv  141 (183)
                      .+.|+++++.+++++   +++|||||++.||..||||||+|||+..++..    +.......+ .....  .++++++||
T Consensus         3 ~~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~iV   82 (153)
T 2vsw_A            3 GTQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVV   82 (153)
T ss_dssp             CEEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHHTTSSCHHHHHHHSCSSCCCCCTTSEEE
T ss_pred             CccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhhcCCcCHHHhcCchhhhhhccCCCCeEE
Confidence            357899999998863   48999999999999999999999999632100    000000000 00001  246789999


Q ss_pred             EEcCCchHHHHH------HHHHH-c--CCCCeeEccccHHHhhhCCC
Q 030104          142 VGCQSGKRSMMA------ATDLL-N--GFAGITDIAGGFAAWRQNGL  179 (183)
Q Consensus       142 v~c~~g~~s~~a------~~~L~-~--G~~~v~~l~GG~~~W~~~g~  179 (183)
                      |||++|.++..+      ++.|+ +  ||++|++|+||+.+|.+.+.
T Consensus        83 vyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~~  129 (153)
T 2vsw_A           83 VYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFP  129 (153)
T ss_dssp             EECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHCG
T ss_pred             EEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhCh
Confidence            999999987655      57777 6  99999999999999987643

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.85  E-value=7.8e-21  Score=154.61  Aligned_cols=114  Identities=18%  Similarity=0.187  Sum_probs=92.2

Q ss_pred             CCCcccCHHHHHHHHhC-----CCEEEEcC---------ChhhHhccCCCCceecCcccccC-----CCCCCCHHHHHHH
Q 030104           70 GVPTSVPVRVAHELLQA-----GHRYLDVR---------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEV  130 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-----~~~lIDvR---------~~~e~~~ghIpgAvnip~~~~~~-----~~~~~~~~~~~~~  130 (183)
                      .....|+++++.+++++     +++|||||         ++.||..||||||+|||++.+..     .+...+.+.+...
T Consensus        19 ~~~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~~~~~~lp~~~~~~~~   98 (302)
T 3olh_A           19 YFQSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEY   98 (302)
T ss_dssp             -CCCEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSCSSSSCCCCHHHHHHH
T ss_pred             CCCCccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCCCCCCCCCCHHHHHHH
Confidence            34567999999998875     68999999         78999999999999999864321     2334455666666


Q ss_pred             Hhc--CCCCCeEEEEcCC---chHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          131 STR--FRKHDEIIVGCQS---GKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       131 ~~~--l~~~~~ivv~c~~---g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +..  ++++++|||||++   +.+|.++++.|+ +||++|++|+||+.+|.++|+|+++
T Consensus        99 ~~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  157 (302)
T 3olh_A           99 AGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSS  157 (302)
T ss_dssp             HHHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-CC
T ss_pred             HHHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCccc
Confidence            665  4788999999964   346999999999 9999999999999999999999863

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.85  E-value=5.8e-21  Score=148.46  Aligned_cols=97  Identities=20%  Similarity=0.269  Sum_probs=78.5

Q ss_pred             CCCcccCHHHHHHHHhC-------CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc---C--CCC
Q 030104           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---F--RKH  137 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~---l--~~~  137 (183)
                      .....|+++++.+++++       +++|||||++.||..||||||+|||+.           +.+...+..   +  +++
T Consensus        54 ~~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~-----------~~l~~~l~~~~~~~~~~~  122 (216)
T 3op3_A           54 QDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQ-----------EELFNFFLKKPIVPLDTQ  122 (216)
T ss_dssp             SSSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSH-----------HHHHHHHTSSCCCCSSTT
T ss_pred             CCCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChH-----------HHHHHHHhhccccccccC
Confidence            34678999999999876       378999999999999999999999984           334443321   2  234


Q ss_pred             C--eEEEEcC-CchHHHHHHHHHH-c----------CCCCeeEccccHHHhhhC
Q 030104          138 D--EIIVGCQ-SGKRSMMAATDLL-N----------GFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       138 ~--~ivv~c~-~g~~s~~a~~~L~-~----------G~~~v~~l~GG~~~W~~~  177 (183)
                      +  .|||||. +|.||..++..|+ .          ||++|++|+||+.+|.++
T Consensus       123 k~~~VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~  176 (216)
T 3op3_A          123 KRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPE  176 (216)
T ss_dssp             SEEEEEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             CCCEEEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHh
Confidence            4  4999999 9999999999998 7          899999999999999875

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.85  E-value=3.7e-21  Score=153.63  Aligned_cols=102  Identities=21%  Similarity=0.239  Sum_probs=85.0

Q ss_pred             CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc--CCCCCeEEEEcCC
Q 030104           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQS  146 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~~  146 (183)
                      .....|+++++.++++++ ++|||||++.||..||||||+|+|+..+.        ++..+....  .+++++||+||++
T Consensus       119 ~~~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~--------~~~~~l~~~l~~~kdk~IVvyC~~  190 (265)
T 4f67_A          119 NAGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFR--------EFPDYVQRNLIDKKDKKIAMFCTG  190 (265)
T ss_dssp             CTTCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTCBCCCCSSGG--------GHHHHHHHHTGGGTTSCEEEECSS
T ss_pred             CCCceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCCEeCCHHHHH--------hhHHHHHHhhhhCCCCeEEEEeCC
Confidence            456789999999998765 99999999999999999999999985321        222222222  3678999999999


Q ss_pred             chHHHHHHHHHH-cCCCCeeEccccHHHhhhCCC
Q 030104          147 GKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGL  179 (183)
Q Consensus       147 g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~  179 (183)
                      |.||..+++.|+ .||++|++|+||+.+|.++..
T Consensus       191 G~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~~~~~  224 (265)
T 4f67_A          191 GIRCEKTTAYMKELGFEHVYQLHDGILNYLESIP  224 (265)
T ss_dssp             SHHHHHHHHHHHHHTCSSEEEETTHHHHHHHHSC
T ss_pred             ChHHHHHHHHHHHcCCCCEEEecCHHHHHHHhcC
Confidence            999999999999 999999999999999988643

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.85  E-value=4e-21  Score=148.94  Aligned_cols=101  Identities=18%  Similarity=0.236  Sum_probs=83.6

Q ss_pred             CCCcccCHHHHHHHHhC-------CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHh---cCC--CC
Q 030104           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RFR--KH  137 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~---~l~--~~  137 (183)
                      .....|+++++.+++++       +++|||||++.||..||||||+|||+.           +.......   .++  ++
T Consensus        41 ~~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~-----------~l~~~~~~~~~~l~~~~d  109 (211)
T 1qb0_A           41 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLD  109 (211)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHTTTCCCSSTT
T ss_pred             CCCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCch-----------HHHHHhhhhhhhccccCC
Confidence            45678999999998875       489999999999999999999999994           22232222   343  67


Q ss_pred             CeE--EEEcC-CchHHHHHHHHHH-c----------CCCCeeEccccHHHhhhCCCCC
Q 030104          138 DEI--IVGCQ-SGKRSMMAATDLL-N----------GFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       138 ~~i--vv~c~-~g~~s~~a~~~L~-~----------G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      ++|  |+||. +|.||..+++.|+ .          ||++|++|+||+.+|.++|.++
T Consensus       110 ~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~  167 (211)
T 1qb0_A          110 KRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNF  167 (211)
T ss_dssp             SEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGG
T ss_pred             CCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCccc
Confidence            887  78899 9999999998886 4          9999999999999999988765

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.84  E-value=7.3e-21  Score=140.28  Aligned_cols=102  Identities=20%  Similarity=0.246  Sum_probs=77.9

Q ss_pred             CcccCHHHHHHHHhC-----CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCC-CC-CeEEEEc
Q 030104           72 PTSVPVRVAHELLQA-----GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KH-DEIIVGC  144 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-----~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~ivv~c  144 (183)
                      ...|+++++.+++++     +++|||||++ ||..||||||+|||+..+.       ...+..+...+. ++ +.||+||
T Consensus         4 ~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~-------~~~~~~l~~~l~~~~~~~vV~yC   75 (152)
T 2j6p_A            4 YTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCT-------EEMYEKLAKTLFEEKKELAVFHC   75 (152)
T ss_dssp             CEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCC-------HHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             cCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhh-------HHHHHHHHHHhcccCCCEEEEEc
Confidence            457899999998876     6899999999 9999999999999995321       112222222221 33 4577779


Q ss_pred             -CCchHHHHHH----HHHH-cCC--CCeeEccccHHHhhhCCCCC
Q 030104          145 -QSGKRSMMAA----TDLL-NGF--AGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       145 -~~g~~s~~a~----~~L~-~G~--~~v~~l~GG~~~W~~~g~pv  181 (183)
                       .+|.|+..++    +.|. .||  .+|++|+||+.+|.+++.++
T Consensus        76 ~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~  120 (152)
T 2j6p_A           76 AQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDV  120 (152)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTT
T ss_pred             CCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCC
Confidence             7999998887    6778 897  58999999999999987765

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.83  E-value=6.7e-21  Score=149.10  Aligned_cols=98  Identities=34%  Similarity=0.502  Sum_probs=82.1

Q ss_pred             ccCHHHHHHHHhCCCEEEEcCChhhHhc----------cCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEE
Q 030104           74 SVPVRVAHELLQAGHRYLDVRTPEEFSA----------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVG  143 (183)
Q Consensus        74 ~i~~~~~~~~~~~~~~lIDvR~~~e~~~----------ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~  143 (183)
                      .++.+++.+    +++|||||++.||..          ||||||+|+|+.++....     +.+..  ..++++++||+|
T Consensus       122 ~i~~~e~~~----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~-----e~~~~--~~~~~~~~iv~~  190 (230)
T 2eg4_A          122 LLTADEAAR----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPE-----GLLER--LGLQPGQEVGVY  190 (230)
T ss_dssp             BCCHHHHHT----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCT-----THHHH--HTCCTTCEEEEE
T ss_pred             eeCHHHHhh----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChH-----HHHHh--cCCCCCCCEEEE
Confidence            577777765    789999999999998          999999999996543221     11111  247889999999


Q ss_pred             cCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          144 CQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       144 c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      |.+|.||..++..|+ .| .+|++|+||+.+|.++|+|+++
T Consensus       191 C~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g~p~~~  230 (230)
T 2eg4_A          191 CHSGARSAVAFFVLRSLG-VRARNYLGSMHEWLQEGLPTEP  230 (230)
T ss_dssp             CSSSHHHHHHHHHHHHTT-CEEEECSSHHHHHHHTTCCCBC
T ss_pred             cCChHHHHHHHHHHHHcC-CCcEEecCcHHHHhhcCCCCCC
Confidence            999999999999999 99 8999999999999999999874

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.83  E-value=6.4e-21  Score=137.86  Aligned_cols=106  Identities=20%  Similarity=0.260  Sum_probs=73.7

Q ss_pred             ccCHHHHHH--------HHhC-CCEEEEcCChhhHhccCCCCceecCcccccCC-----CCCCCHHHHHH-----HHhcC
Q 030104           74 SVPVRVAHE--------LLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEE-----VSTRF  134 (183)
Q Consensus        74 ~i~~~~~~~--------~~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~-----~~~~~~~~~~~-----~~~~l  134 (183)
                      .|+++++.+        ++++ +++|||||++.||..||||||+|+|+...+..     ........+..     ....+
T Consensus         2 ~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (142)
T 2ouc_A            2 IIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRI   81 (142)
T ss_dssp             EECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHHHTTSSCHHHHHHTTSCTTHHHHH
T ss_pred             ccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHhhcCCcchhhhCCChhhhHHHhcc
Confidence            478888887        4443 48999999999999999999999999632210     00000011100     00000


Q ss_pred             CCCCeEEEEcCCchHH---------HHHHHHHH-cCCCCeeEccccHHHhhhCCCCC
Q 030104          135 RKHDEIIVGCQSGKRS---------MMAATDLL-NGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       135 ~~~~~ivv~c~~g~~s---------~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                       .+++|||||++|.++         ..++..|. .|| +|++|+||+.+|.++|.++
T Consensus        82 -~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~~  136 (142)
T 2ouc_A           82 -FSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENL  136 (142)
T ss_dssp             -HHSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGGG
T ss_pred             -CCCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHHh
Confidence             268899999999874         45777889 999 9999999999999998775

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.83  E-value=8.2e-21  Score=158.70  Aligned_cols=109  Identities=17%  Similarity=0.070  Sum_probs=90.3

Q ss_pred             CcccCHHHHHHHHhCCCEEEEcCC--------hhhHhccCCCCceecCccc-ccC-------CCCCCCHHHHHHHHh--c
Q 030104           72 PTSVPVRVAHELLQAGHRYLDVRT--------PEEFSAGHATGAINVPYMY-RVG-------SGMTKNLKFVEEVST--R  133 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~~~lIDvR~--------~~e~~~ghIpgAvnip~~~-~~~-------~~~~~~~~~~~~~~~--~  133 (183)
                      ...|+++++++++++ ++|||||+        +.||..||||||+|+|+.. +..       .+...+.+.+...+.  .
T Consensus        13 ~~~Is~~el~~~l~~-~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~~~~~~~~lp~~~~f~~~l~~~g   91 (373)
T 1okg_A           13 KVFLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFIDWCMANG   91 (373)
T ss_dssp             CCEECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTT
T ss_pred             CcEEcHHHHHHHcCC-cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccccCCccccCCCHHHHHHHHHHcC
Confidence            568999999988877 99999998        6999999999999999975 322       133445555555554  3


Q ss_pred             CCCCCeEEEEc-CCchHHH-HHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          134 FRKHDEIIVGC-QSGKRSM-MAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       134 l~~~~~ivv~c-~~g~~s~-~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ++++++||||| .+|.++. ++++.|+ +|| +|++|+||+.+|.++|+|++
T Consensus        92 i~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv~  142 (373)
T 1okg_A           92 MAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEME  142 (373)
T ss_dssp             CSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEE
T ss_pred             CCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCcc
Confidence            68899999999 7788886 9999999 999 99999999999999999875

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.83  E-value=3e-20  Score=157.44  Aligned_cols=138  Identities=13%  Similarity=0.173  Sum_probs=104.2

Q ss_pred             eEEccCCccccccccccCCc-ccc-------------CCCCcccCHHHHHHHHhC-CCEEEEcCChhhH-----------
Q 030104           46 IGFISSKILSFCPKASLRGN-LEA-------------VGVPTSVPVRVAHELLQA-GHRYLDVRTPEEF-----------   99 (183)
Q Consensus        46 ~~~l~~~~~~~~~~~~~~~~-~~~-------------~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~-----------   99 (183)
                      +..+.+++..|......... ...             ......++.+++.+++++ +.+|||||++.||           
T Consensus       231 v~~l~Gg~~~W~~~g~pv~~g~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~  310 (423)
T 2wlr_A          231 VRLLDGGWQTWSDAGLPVERGTPPKVKAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIK  310 (423)
T ss_dssp             EEEETTTHHHHHHTTCCCBCSSCCCCCCCCCCSSCSCSCGGGEECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCC
T ss_pred             eEEECCCHHHHhhCCCCcccCCCCCCCCCcCcccccCCChhheecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCC
Confidence            45788999999642111110 000             011234788999887764 4889999999999           


Q ss_pred             hccCCCCceecCcc-------ccc-CCCCCCCHHHHHHHHh--cCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEcc
Q 030104          100 SAGHATGAINVPYM-------YRV-GSGMTKNLKFVEEVST--RFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIA  168 (183)
Q Consensus       100 ~~ghIpgAvnip~~-------~~~-~~~~~~~~~~~~~~~~--~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~  168 (183)
                      ..||||||+|+|+.       +++ ..+...+.+.+...+.  .++++++||+||.+|.||..++..|+ +||++|++|+
T Consensus       311 ~~GhIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~  390 (423)
T 2wlr_A          311 PKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYD  390 (423)
T ss_dssp             CCSEETTCEECCCCSSTTCCGGGBCTTSSBCCHHHHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEES
T ss_pred             cCCCCCCccccccccccccHHHHcCCCCcCCCHHHHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeC
Confidence            79999999999974       222 2344556667777664  47889999999999999999999999 9999999999


Q ss_pred             ccHHHhhh-CCCCCCC
Q 030104          169 GGFAAWRQ-NGLPTEP  183 (183)
Q Consensus       169 GG~~~W~~-~g~pv~~  183 (183)
                      ||+.+|.+ .++|+++
T Consensus       391 GG~~~W~~~~~~Pv~~  406 (423)
T 2wlr_A          391 GGWYEWSSDPKNPVAT  406 (423)
T ss_dssp             SHHHHHTTSTTSCEEC
T ss_pred             ccHHHHhcCCCCCccc
Confidence            99999998 7888763

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.82  E-value=2.3e-20  Score=162.65  Aligned_cols=100  Identities=25%  Similarity=0.337  Sum_probs=86.4

Q ss_pred             CcccCHHHHHHHHhC--CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC-CCCCeEEEEcCCch
Q 030104           72 PTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEIIVGCQSGK  148 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ivv~c~~g~  148 (183)
                      ...|+++++++++++  +++|||||++.||..||||||+|||+.           ++.......+ +++++|||||++|.
T Consensus         6 ~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~-----------~~~~~~~~l~~~~~~~iVvyc~~g~   74 (539)
T 1yt8_A            6 IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS-----------RLELEIHARVPRRDTPITVYDDGEG   74 (539)
T ss_dssp             CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGG-----------GHHHHHHHHSCCTTSCEEEECSSSS
T ss_pred             CcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHH-----------HHHHHHHhhCCCCCCeEEEEECCCC
Confidence            467999999988864  589999999999999999999999994           2323333333 46899999999999


Q ss_pred             HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          149 RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +|.++++.|+ .||++|++|+||+.+|.++|+|++
T Consensus        75 ~s~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~  109 (539)
T 1yt8_A           75 LAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELF  109 (539)
T ss_dssp             HHHHHHHHHHHTTCSSEEEETTHHHHHHHTTCCCB
T ss_pred             hHHHHHHHHHHcCCCceEEeCCCHHHHHhcCCCcc
Confidence            9999999999 999999999999999999999985

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.82  E-value=3.3e-20  Score=157.22  Aligned_cols=111  Identities=18%  Similarity=0.260  Sum_probs=95.7

Q ss_pred             cccCHHHHHHHHh---------CCCEEEEcC--ChhhHhccCCCCceecCcccccC--CCCCCCHHHHHHHHhc--CCCC
Q 030104           73 TSVPVRVAHELLQ---------AGHRYLDVR--TPEEFSAGHATGAINVPYMYRVG--SGMTKNLKFVEEVSTR--FRKH  137 (183)
Q Consensus        73 ~~i~~~~~~~~~~---------~~~~lIDvR--~~~e~~~ghIpgAvnip~~~~~~--~~~~~~~~~~~~~~~~--l~~~  137 (183)
                      ..++++++.++++         .+++|||||  ++.||..||||||+|+|+..+..  .+...+.+.++..+..  ++++
T Consensus       124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~  203 (423)
T 2wlr_A          124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHD  203 (423)
T ss_dssp             GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETTTTEECCHHHHHHHHHHTTCCTT
T ss_pred             cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCC
Confidence            5688899988886         248899999  99999999999999999976543  2455677777777754  6789


Q ss_pred             CeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          138 DEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       138 ~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ++||+||.+|.+|..+++.|+ .||++|++|+||+.+|...|+|+++
T Consensus       204 ~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~~  250 (423)
T 2wlr_A          204 TTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVER  250 (423)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCCBC
T ss_pred             CeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCccc
Confidence            999999999999999999999 9999999999999999999998863

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.81  E-value=6.5e-21  Score=143.02  Aligned_cols=107  Identities=21%  Similarity=0.301  Sum_probs=79.1

Q ss_pred             CCCcccCHHHHHHHHhC--------CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC-------
Q 030104           70 GVPTSVPVRVAHELLQA--------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-------  134 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~--------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l-------  134 (183)
                      ...+.|+++++.+++++        +++|||||+ .||..||||||+|||+..+..     ....+.++...+       
T Consensus        28 ~~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~-----~~~~l~~l~~~~~~~~~~~  101 (169)
T 3f4a_A           28 TNVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQ-----DPEYLRELKHRLLEKQADG  101 (169)
T ss_dssp             CSEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHH-----CHHHHHHHHHHHHHHHHTS
T ss_pred             CCCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhc-----ccccHHHHHHHHHhhcccc
Confidence            45678999999998864        389999999 999999999999999953211     001122222211       


Q ss_pred             CCCCeEEEEcCCc-hHHHHHHHHHH--c---C--CCCeeEccccHHHhhhCCCCCC
Q 030104          135 RKHDEIIVGCQSG-KRSMMAATDLL--N---G--FAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       135 ~~~~~ivv~c~~g-~~s~~a~~~L~--~---G--~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ..+++|||||.+| .|+..++..|.  +   |  +.+|++|+||+.+|.+++.+.+
T Consensus       102 ~~~~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~~~~~  157 (169)
T 3f4a_A          102 RGALNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGDDE  157 (169)
T ss_dssp             SSCEEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHHTTCT
T ss_pred             cCCCeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHcCCcc
Confidence            1237999999987 79988886664  2   5  5789999999999999877654

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.80  E-value=2.3e-20  Score=137.36  Aligned_cols=105  Identities=20%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             CCcccCHHHHHHHHhC---CCEEEEcCChhhHhccCCCCceecCccccc----C-C-----CCCCCHHHHHHHHhcCCCC
Q 030104           71 VPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRV----G-S-----GMTKNLKFVEEVSTRFRKH  137 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAvnip~~~~~----~-~-----~~~~~~~~~~~~~~~l~~~  137 (183)
                      ....|+++++.+++++   +++|||||++.||..||||||+|||+....    . .     ...... .....+..++++
T Consensus        14 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~   92 (154)
T 1hzm_A           14 MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRG-EDRDRFTRRCGT   92 (154)
T ss_dssp             CSSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTS-HHHHHHHHSTTS
T ss_pred             cccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcCcccHHHhCCCH-HHHHHHhccCCC
Confidence            3456778888877754   589999999999999999999999986532    0 1     122111 122334456788


Q ss_pred             CeEEEEcCCchHH-------HHHHHHHH-c---CCCCeeEccccHHHhhhC
Q 030104          138 DEIIVGCQSGKRS-------MMAATDLL-N---GFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       138 ~~ivv~c~~g~~s-------~~a~~~L~-~---G~~~v~~l~GG~~~W~~~  177 (183)
                      ++|||||.+|.++       ..+++.|+ +   ||+ |++|+||+.+|.+.
T Consensus        93 ~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           93 DTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE  142 (154)
T ss_dssp             SCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH
T ss_pred             CeEEEEeCCCCccccccccchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH
Confidence            8999999998865       34466666 6   998 99999999999875

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.80  E-value=1.7e-20  Score=156.71  Aligned_cols=97  Identities=18%  Similarity=0.298  Sum_probs=80.4

Q ss_pred             hCCCEEEEcCChhhHh-----------ccCCCCceecCccccc--C-CCC-CCCHHHHHHHHhcC----CC---CCeEEE
Q 030104           85 QAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRV--G-SGM-TKNLKFVEEVSTRF----RK---HDEIIV  142 (183)
Q Consensus        85 ~~~~~lIDvR~~~e~~-----------~ghIpgAvnip~~~~~--~-~~~-~~~~~~~~~~~~~l----~~---~~~ivv  142 (183)
                      +.+.+|||||++.||.           .||||||+|||+..+.  . .+. ..+.+.++..+..+    ++   +++||+
T Consensus       172 ~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~~~~l~~~~~~~~~gi~~~~~d~~ivv  251 (373)
T 1okg_A          172 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVF  251 (373)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEE
T ss_pred             ccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCCCCccCCHHHHHHHHHhhhcCCCcccCCCCEEE
Confidence            4558999999999999           9999999999997654  2 223 45667777777654    77   899999


Q ss_pred             EcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh-CCCCC
Q 030104          143 GCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ-NGLPT  181 (183)
Q Consensus       143 ~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~-~g~pv  181 (183)
                      ||++|.||..++..|. .||++|++|+|||.+|.. .++|+
T Consensus       252 yC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv  292 (373)
T 1okg_A          252 SCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPI  292 (373)
T ss_dssp             ECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHH
T ss_pred             ECCchHHHHHHHHHHHHcCCCCeeEeCChHHHHhcCCCCCc
Confidence            9999999999999999 999999999999999987 56664

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.79  E-value=1.5e-19  Score=158.51  Aligned_cols=95  Identities=26%  Similarity=0.532  Sum_probs=85.7

Q ss_pred             CCCcccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchH
Q 030104           70 GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKR  149 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~  149 (183)
                      .....|+++++.++++++++|||||++.||..||||||+|||+            +.+......++++++||+||.+|.|
T Consensus       486 ~~~~~i~~~~~~~~~~~~~~~iDvR~~~e~~~ghi~ga~~ip~------------~~l~~~~~~l~~~~~iv~~C~~g~r  553 (588)
T 3ics_A          486 GFVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIPL------------DELRDRLEEVPVDKDIYITCQLGMR  553 (588)
T ss_dssp             TSCCEECTTTHHHHHHTTCEEEECSCGGGGGGCBCTTEEECCH------------HHHTTCGGGSCSSSCEEEECSSSHH
T ss_pred             cccceecHHHHHHHhcCCCEEEEcCCHHHHhcCCCCCCEECCH------------HHHHHHHhhCCCCCeEEEECCCCcH
Confidence            3445688899999888889999999999999999999999999            5566666778899999999999999


Q ss_pred             HHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104          150 SMMAATDLL-NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       150 s~~a~~~L~-~G~~~v~~l~GG~~~W~~~  177 (183)
                      |..+++.|+ .||+ |++|+||+.+|.+.
T Consensus       554 s~~a~~~l~~~G~~-v~~l~GG~~~w~~~  581 (588)
T 3ics_A          554 GYVAARMLMEKGYK-VKNVDGGFKLYGTV  581 (588)
T ss_dssp             HHHHHHHHHHTTCC-EEEETTHHHHHHHH
T ss_pred             HHHHHHHHHHcCCc-EEEEcchHHHHHhh
Confidence            999999999 9998 99999999999875

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.79  E-value=5.6e-19  Score=130.85  Aligned_cols=104  Identities=19%  Similarity=0.263  Sum_probs=76.3

Q ss_pred             CCCCcccCHHHHHHHHhC---------CCEEEEcCChhhHhccCCCCceecCccccc-----CCCCCCCHHHHHHHH---
Q 030104           69 VGVPTSVPVRVAHELLQA---------GHRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVS---  131 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~---------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~-----~~~~~~~~~~~~~~~---  131 (183)
                      ......|+++++.+++++         +.+|||||++.||..||||||+|+|+..++     ..+...    +....   
T Consensus         7 ~~~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~~~~~~~----~~~~~~~~   82 (158)
T 3tg1_B            7 LASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKIT----VLDLISCR   82 (158)
T ss_dssp             ----CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHHTTSSCC----HHHHTCCC
T ss_pred             CCCCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhhhcCccc----HHhhcCCH
Confidence            345678999999998873         489999999999999999999999996432     110000    00000   


Q ss_pred             ---hcC--CCCCeEEEEcCCc---------hHHHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104          132 ---TRF--RKHDEIIVGCQSG---------KRSMMAATDLL-NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       132 ---~~l--~~~~~ivv~c~~g---------~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~  177 (183)
                         ..+  .++++|||||.+|         .++..+++.|. .|| +|++|+||+.+|.+.
T Consensus        83 ~~~~~~~~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~~  142 (158)
T 3tg1_B           83 EGKDSFKRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQN  142 (158)
T ss_dssp             CSSCSSTTTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTC-CEEEETTHHHHHTSS
T ss_pred             HHHHHHhccCCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCC-cEEEeCCcHHHHHHH
Confidence               001  2478999999999         46889999999 999 799999999999765

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.78  E-value=9.1e-20  Score=158.79  Aligned_cols=91  Identities=27%  Similarity=0.480  Sum_probs=77.9

Q ss_pred             ccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHH
Q 030104           74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMA  153 (183)
Q Consensus        74 ~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a  153 (183)
                      .|+++++.++ +++++|||||++.||..||||||+|+|+.            .+......++++++||+||++|.||..+
T Consensus       474 ~i~~~~~~~~-~~~~~~iDvR~~~e~~~~~i~ga~~ip~~------------~l~~~~~~~~~~~~iv~~c~~g~rs~~a  540 (565)
T 3ntd_A          474 PIHFDQIDNL-SEDQLLLDVRNPGELQNGGLEGAVNIPVD------------ELRDRMHELPKDKEIIIFSQVGLRGNVA  540 (565)
T ss_dssp             EECTTTTTSC-CTTEEEEECSCGGGGGGCCCTTCEECCGG------------GTTTSGGGSCTTSEEEEECSSSHHHHHH
T ss_pred             eeeHHHHHhC-CCCcEEEEeCCHHHHhcCCCCCcEECCHH------------HHHHHHhhcCCcCeEEEEeCCchHHHHH
Confidence            4555555554 45689999999999999999999999994            3344455688999999999999999999


Q ss_pred             HHHHH-cCCCCeeEccccHHHhhhCC
Q 030104          154 ATDLL-NGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       154 ~~~L~-~G~~~v~~l~GG~~~W~~~g  178 (183)
                      ++.|+ .|| +|++|+||+.+|.++|
T Consensus       541 ~~~l~~~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          541 YRQLVNNGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             HHHHHHTTC-CEEEETTHHHHHHHTC
T ss_pred             HHHHHHcCC-CEEEEcChHHHHHhCc
Confidence            99999 999 9999999999999875

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.75  E-value=5.8e-18  Score=138.98  Aligned_cols=107  Identities=19%  Similarity=0.357  Sum_probs=84.0

Q ss_pred             ccCHHHHHHHHhCC-----CEEEEcCChhhHh-----------ccCCCCceecCcccccCCC---CCCCHHHHHHHH---
Q 030104           74 SVPVRVAHELLQAG-----HRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSG---MTKNLKFVEEVS---  131 (183)
Q Consensus        74 ~i~~~~~~~~~~~~-----~~lIDvR~~~e~~-----------~ghIpgAvnip~~~~~~~~---~~~~~~~~~~~~---  131 (183)
                      .++.+++.+.++++     ++|||+|++.+|.           .||||||+|+|+...+...   +....+.++..+   
T Consensus       185 v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~~~~~~~~e~l~~~l~~~  264 (327)
T 3utn_X          185 IVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKA  264 (327)
T ss_dssp             EECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTTCCCCCTTHHHHHHHHHH
T ss_pred             eecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCCCCCCCcHHHHHHHHHHH
Confidence            46777887777653     7899999999996           5999999999998777432   222333333222   


Q ss_pred             -h----cCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCC
Q 030104          132 -T----RFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLP  180 (183)
Q Consensus       132 -~----~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~p  180 (183)
                       .    .++++++||+||.+|.+++..+..|. +||++|++|+|+|.+|.....|
T Consensus       265 ~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW~~r~~p  319 (327)
T 3utn_X          265 LKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWVLKSGP  319 (327)
T ss_dssp             HHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHCG
T ss_pred             HHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHhccccCC
Confidence             2    36788999999999999999999999 9999999999999999875444

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.73  E-value=1.3e-18  Score=149.24  Aligned_cols=121  Identities=17%  Similarity=0.151  Sum_probs=95.2

Q ss_pred             cCCccccccccccCCccc----cCCCCcccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHH
Q 030104           50 SSKILSFCPKASLRGNLE----AVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLK  125 (183)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~  125 (183)
                      .|.|+..+...|..+...    ..+....|++++++++++++ +|||||++.+|..||||||+|+|+.          ..
T Consensus       246 ~p~~~~~~~~~N~~G~~~~~~~~~~~~~~is~~~l~~~l~~~-~iiD~R~~~~y~~ghIpGA~~i~~~----------~~  314 (474)
T 3tp9_A          246 APIYFARMKLVNKVGPRLLAELGAPERVDLPPERVRAWREGG-VVLDVRPADAFAKRHLAGSLNIPWN----------KS  314 (474)
T ss_dssp             CCTTHHHHHHHHHHCCCCHHHHCCCEECCCCGGGHHHHHHTS-EEEECSCHHHHHHSEETTCEECCSS----------TT
T ss_pred             CCccHHHHHhhhccCcccccccccCCCceeCHHHHHHHhCCC-EEEECCChHHHhccCCCCeEEECcc----------hH
Confidence            356666666666655322    24556789999999998887 9999999999999999999999984          13


Q ss_pred             HHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       126 ~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +..+..+..+++++|||||+.|. +.++++.|+ +||++|+++.+|+.+|..++.++.
T Consensus       315 ~~~~~~~l~~~~~~vvvy~~~~~-~~~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~  371 (474)
T 3tp9_A          315 FVTWAGWLLPADRPIHLLAADAI-APDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVA  371 (474)
T ss_dssp             HHHHHHHHCCSSSCEEEECCTTT-HHHHHHHHHHTTCCCEEEEECGGGGTTCCGGGEE
T ss_pred             HHHHHHhcCCCCCeEEEEECCCc-HHHHHHHHHHcCCcceEEecCcHHHHHhcccccc
Confidence            44444444578899999999887 556999999 999999987779999999887654

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.73  E-value=2.3e-17  Score=135.43  Aligned_cols=112  Identities=14%  Similarity=0.108  Sum_probs=90.6

Q ss_pred             CCCcccCHHHHHHHHhCC----CEEEEcC--------C-hhhH-hccCCCCceecCcccccC-----CCCCCCHHHHHHH
Q 030104           70 GVPTSVPVRVAHELLQAG----HRYLDVR--------T-PEEF-SAGHATGAINVPYMYRVG-----SGMTKNLKFVEEV  130 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~----~~lIDvR--------~-~~e~-~~ghIpgAvnip~~~~~~-----~~~~~~~~~~~~~  130 (183)
                      +....||++++.++++..    +++||++        + ..|| +.||||||++++++.+-.     .+++.+.+.+++.
T Consensus        25 ~~~~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~~~~ph~LP~~~~f~~~  104 (327)
T 3utn_X           25 PLFDLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDA  104 (327)
T ss_dssp             CSCEEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTTSSSTTCCCCHHHHHHH
T ss_pred             ccccccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCCCCCCCCCcCHHHHHHH
Confidence            344579999999988632    7889985        3 4566 789999999999875331     2456777777777


Q ss_pred             Hhc--CCCCCeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          131 STR--FRKHDEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       131 ~~~--l~~~~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +..  |+++++||||++.+. .+.+++|+|+ +|+++|++|+|| .+|.++|+|++
T Consensus       105 l~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~~  159 (327)
T 3utn_X          105 MSNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPLD  159 (327)
T ss_dssp             HHHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCCB
T ss_pred             HHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCcc
Confidence            766  789999999998765 6889999999 999999999987 89999999986

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.72  E-value=1.1e-17  Score=130.80  Aligned_cols=92  Identities=17%  Similarity=0.117  Sum_probs=70.9

Q ss_pred             CCCEEEEcCChhhHhccCCCCceecCcc--cccCC---CCCCCHHHHHHHHhcCCCCCeEEEEcCCch-HHHHHHHHHHc
Q 030104           86 AGHRYLDVRTPEEFSAGHATGAINVPYM--YRVGS---GMTKNLKFVEEVSTRFRKHDEIIVGCQSGK-RSMMAATDLLN  159 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpgAvnip~~--~~~~~---~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~-~s~~a~~~L~~  159 (183)
                      ++++|||||++.||..||||||+|+|+.  .+...   +...+.+.+...+..++.+++|||||++|. +|.++++.|++
T Consensus         5 ~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyc~~g~~~s~~a~~~L~~   84 (230)
T 2eg4_A            5 EDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAELKALEGGLTELFQTLGLRSPVVLYDEGLTSRLCRTAFFLGL   84 (230)
T ss_dssp             TTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHHHHHHHHHHHHHHHTTCCSSEEEECSSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCcCCCHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHHHHc
Confidence            3589999999999999999999999985  32210   001112345555556666899999999998 89888888779


Q ss_pred             CCCCeeEccccHHHhhhCCCCCC
Q 030104          160 GFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       160 G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ||++|++|+||   |.+  +|++
T Consensus        85 G~~~v~~l~GG---W~~--~p~~  102 (230)
T 2eg4_A           85 GGLEVQLWTEG---WEP--YATE  102 (230)
T ss_dssp             TTCCEEEECSS---CGG--GCCB
T ss_pred             CCceEEEeCCC---Ccc--Cccc
Confidence            99999999999   976  6653

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.72  E-value=4.2e-19  Score=152.21  Aligned_cols=85  Identities=33%  Similarity=0.493  Sum_probs=0.0

Q ss_pred             HHHHHhC-CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH
Q 030104           80 AHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL  158 (183)
Q Consensus        80 ~~~~~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~  158 (183)
                      +.+++++ +++|||||++.||..||||||+|+|+            ..+...+..++++++||+||.+|.||..+++.|+
T Consensus       379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~iv~~C~~G~rs~~a~~~L~  446 (466)
T 3r2u_A          379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPH------------GKLLETDLPFNKNDVIYVHCQSGIRSSIAIGILE  446 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCH------------HHHHHHHhhCCCCCeEEEECCCChHHHHHHHHHH
Confidence            3444433 48899999999999999999999999            3445555668889999999999999999999999


Q ss_pred             -cCCCCeeEccccHHHhhh
Q 030104          159 -NGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus       159 -~G~~~v~~l~GG~~~W~~  176 (183)
                       .||++|++|+||+.+|.+
T Consensus       447 ~~G~~~v~~l~GG~~~W~~  465 (466)
T 3r2u_A          447 HKGYHNIINVNEGYKDIQL  465 (466)
T ss_dssp             -------------------
T ss_pred             HcCCCCEEEecChHHHHhh
Confidence             999999999999999975

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.71  E-value=2.2e-17  Score=122.27  Aligned_cols=110  Identities=10%  Similarity=0.097  Sum_probs=72.5

Q ss_pred             CCCcccCHHHHHHHHhC---CCEEEEcCChhhHhccCCCCceecCcccccCCCCC------CCHHHHHHHHhcCCCCCeE
Q 030104           70 GVPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT------KNLKFVEEVSTRFRKHDEI  140 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~------~~~~~~~~~~~~l~~~~~i  140 (183)
                      .....|+++++.+++++   +++|||||++.||..||||||+|||+..+. .+..      ..++.....+....+...|
T Consensus        17 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~-~~~~~~~l~~~lp~~~~~l~~~~~~~~~V   95 (157)
T 2gwf_A           17 RGSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAIS-PGVTASWIEAHLPDDSKDTWKKRGNVEYV   95 (157)
T ss_dssp             --CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCC-TTCCHHHHHHTSCHHHHHHHHTTTTSSEE
T ss_pred             CCCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcC-CCCcHHHHHHHcCHHHHHHHHhcCCCCEE
Confidence            44567999999988864   589999999999999999999999986332 1110      0011112222333344569


Q ss_pred             EEEcCCchH----HHHHHHHHH-----c----CCC-CeeEccccHHHhhhCCCCC
Q 030104          141 IVGCQSGKR----SMMAATDLL-----N----GFA-GITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       141 vv~c~~g~~----s~~a~~~L~-----~----G~~-~v~~l~GG~~~W~~~g~pv  181 (183)
                      |+||.++.+    +..+++.|.     .    ||. +|++|+||+.+|.+. +|.
T Consensus        96 Vvy~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~  149 (157)
T 2gwf_A           96 VLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQ  149 (157)
T ss_dssp             EEECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGG
T ss_pred             EEEcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-Chh
Confidence            999987753    233444433     2    454 399999999999874 654

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.71  E-value=2.5e-17  Score=121.80  Aligned_cols=109  Identities=9%  Similarity=0.150  Sum_probs=74.1

Q ss_pred             CCCCcccCHHHHHHHHhC---CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHH--------HHHHhcCCCC
Q 030104           69 VGVPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFV--------EEVSTRFRKH  137 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~--------~~~~~~l~~~  137 (183)
                      .+....|+++++.+++++   +++|||||++.||..||||||+|||+..+. .+.  ....+        ...+......
T Consensus        11 ~~~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~-~~~--~~~~l~~~lp~~~~~~~~~~~~~   87 (157)
T 1whb_A           11 TKEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAIS-PGV--TASWIEAHLPDDSKDTWKKRGNV   87 (157)
T ss_dssp             CCCCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCC-TTC--CHHHHHHSCCTTHHHHHHGGGTS
T ss_pred             cccCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHcc-CCC--cHHHHHHHCChHHHHHHHhcCCC
Confidence            455678999999998864   579999999999999999999999986321 110  00111        1222222233


Q ss_pred             CeEEEEcCCchH----HHHHHHHHH-c--------CCC-CeeEccccHHHhhhCCCCC
Q 030104          138 DEIIVGCQSGKR----SMMAATDLL-N--------GFA-GITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       138 ~~ivv~c~~g~~----s~~a~~~L~-~--------G~~-~v~~l~GG~~~W~~~g~pv  181 (183)
                      ..||+||.++.+    +..+++.|. .        ||. +|++|+||+.+|.+. +|.
T Consensus        88 ~~VVvy~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~  144 (157)
T 1whb_A           88 EYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQ  144 (157)
T ss_dssp             SEEEEECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGG
T ss_pred             CEEEEECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-Chh
Confidence            459999987753    344555554 2        454 399999999999874 654

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.45  E-value=9.6e-14  Score=118.88  Aligned_cols=80  Identities=21%  Similarity=0.302  Sum_probs=62.8

Q ss_pred             hCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCC
Q 030104           85 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAG  163 (183)
Q Consensus        85 ~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~  163 (183)
                      +++++|||+|++.+|..||||||+|+|+.          ..+..+....++++++||+||+ +.++.++++.|+ +||++
T Consensus       294 ~~~~~ilD~R~~~~y~~gHIpGAv~ip~~----------~~~~~~~~~~~~~~~~vvly~~-~~~a~~a~~~L~~~G~~~  362 (466)
T 3r2u_A          294 NTNRLTFDLRSKEAYHGGHIEGTINIPYD----------KNFINQIGWYLNYDQEINLIGD-YHLVSKATHTLQLIGYDD  362 (466)
T ss_dssp             CCCSEEEECSCHHHHHHSCCTTCEECCSS----------TTHHHHHTTTCCTTSCEEEESC-HHHHHHHHHHHHTTTCCC
T ss_pred             CCCeEEEECCCHHHHhhCCCCCcEECCcc----------HHHHHHHHhccCCCCeEEEEEC-CchHHHHHHHhhhhhccc
Confidence            46699999999999999999999999984          1344444444688899999999 568899999999 99999


Q ss_pred             eeE-ccccHHHhh
Q 030104          164 ITD-IAGGFAAWR  175 (183)
Q Consensus       164 v~~-l~GG~~~W~  175 (183)
                      |+. ++|+...|.
T Consensus       363 v~~~l~g~~~~~~  375 (466)
T 3r2u_A          363 IAGYQLPQSKIQT  375 (466)
T ss_dssp             EEEEECCC-----
T ss_pred             ccccccCcccccH
Confidence            986 677665543

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=98.28  E-value=2.5e-06  Score=62.22  Aligned_cols=83  Identities=18%  Similarity=0.196  Sum_probs=53.8

Q ss_pred             cCHHHHHHHHhCC-CEEEEcCChhh------------Hhcc-CCCCceecCcccccCCCCCCCHHHHHHHHhcC-CCCCe
Q 030104           75 VPVRVAHELLQAG-HRYLDVRTPEE------------FSAG-HATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDE  139 (183)
Q Consensus        75 i~~~~~~~~~~~~-~~lIDvR~~~e------------~~~g-hIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l-~~~~~  139 (183)
                      ++++++..+.+.+ ..|||+|++.|            |... +|.|.+|+|+...     ....+.+......+ ..+.+
T Consensus        30 ~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~~-----~~~~~~~~~~~~~l~~~~~p  104 (156)
T 2f46_A           30 LTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTAR-----DIQKHDVETFRQLIGQAEYP  104 (156)
T ss_dssp             CCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCTT-----TCCHHHHHHHHHHHHTSCSS
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCCC-----CCCHHHHHHHHHHHHhCCCC
Confidence            4556666666656 78999997665            3334 5999999998521     12234444444333 24789


Q ss_pred             EEEEcCCchHHHHHHHHHH--cCCC
Q 030104          140 IIVGCQSGKRSMMAATDLL--NGFA  162 (183)
Q Consensus       140 ivv~c~~g~~s~~a~~~L~--~G~~  162 (183)
                      |+|+|.+|.|+..++..+.  .|.+
T Consensus       105 VlvHC~sG~Rs~~l~al~l~~~g~~  129 (156)
T 2f46_A          105 VLAYCRTGTRCSLLWGFRRAAEGMP  129 (156)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCC
Confidence            9999999999875544433  6764

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=95.54  E-value=0.024  Score=39.93  Aligned_cols=82  Identities=13%  Similarity=0.081  Sum_probs=48.2

Q ss_pred             HHHHHHHHhCC-CEEEEcCChhhHhccCCCC--ceecCcccccCCCCCCCHHHHHHHHhc----CCCCCeEEEEcCCch-
Q 030104           77 VRVAHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSGK-  148 (183)
Q Consensus        77 ~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpg--Avnip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ivv~c~~g~-  148 (183)
                      .+++..+.+.+ ..|||+|+..+......+|  -+++|+.+.    ...+.+.+......    +..+.+|+|.|..|. 
T Consensus        25 ~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~  100 (150)
T 4erc_A           25 PAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDF----CPPAPDQIDRFVQIVDEANARGEAVGVHCALGFG  100 (150)
T ss_dssp             HHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTT----SCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSH
T ss_pred             HHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecCCC----CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence            56666666667 7899999976654444444  345666422    12223333333332    345689999999987 


Q ss_pred             HHHH-HH-HHHH-cCCC
Q 030104          149 RSMM-AA-TDLL-NGFA  162 (183)
Q Consensus       149 ~s~~-a~-~~L~-~G~~  162 (183)
                      |+.. ++ ..+. .|++
T Consensus       101 Rsg~~~a~~l~~~~~~~  117 (150)
T 4erc_A          101 RTGTMLACYLVKERGLA  117 (150)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            7763 33 2344 6763

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}

Probab=94.63  E-value=0.063  Score=37.62  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=47.2

Q ss_pred             CHHHHHHHHhCC-CEEEEcCChhhHhccCCCC--ceecCcccccCCCCCCCHHHHHHHHhc----CCCCCeEEEEcCCch
Q 030104           76 PVRVAHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSGK  148 (183)
Q Consensus        76 ~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpg--Avnip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ivv~c~~g~  148 (183)
                      +.++...+.+.+ ..|||+|+..|+....+++  -+++|+.+.    ...+.+.+......    +..+.+|+|.|..|.
T Consensus        25 ~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~~~~d~----~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~aG~  100 (151)
T 2img_A           25 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDF----CPPAPDQIDRFVQIVDEANARGEAVGVHCALGF  100 (151)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTT----CCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cHHHHHHHHHCCCCEEEECCCCCCCCHHHHhhCCeEEEeCCCC----CCCCHHHHHHHHHHHHHHHhCCCcEEEECCCCC
Confidence            456666666667 7899999876654333332  456666422    11223333333222    345789999999886


Q ss_pred             -HHHHHH-HHHH--cCCC
Q 030104          149 -RSMMAA-TDLL--NGFA  162 (183)
Q Consensus       149 -~s~~a~-~~L~--~G~~  162 (183)
                       |+..++ ..|.  .|++
T Consensus       101 ~Rsg~~~~~~l~~~~~~~  118 (151)
T 2img_A          101 GRTGTMLACYLVKERGLA  118 (151)
T ss_dssp             SHHHHHHHHHHHHHHCCC
T ss_pred             ChHHHHHHHHHHHHhCcC
Confidence             766433 3333  3763

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A

Probab=93.72  E-value=0.14  Score=36.07  Aligned_cols=84  Identities=8%  Similarity=-0.015  Sum_probs=45.3

Q ss_pred             HHHHHHHhCC-CEEEEcCChhhHhc-------cCCCCceecCcccccCCCCCCCHHHHHHHHhcC-C-CCCeEEEEcCCc
Q 030104           78 RVAHELLQAG-HRYLDVRTPEEFSA-------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-KHDEIIVGCQSG  147 (183)
Q Consensus        78 ~~~~~~~~~~-~~lIDvR~~~e~~~-------ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l-~-~~~~ivv~c~~g  147 (183)
                      +++..+.+.+ ..|||+|+..+...       ..| .-+++|+.+...+......+.+.+.+..+ + .+.+|+|+|..|
T Consensus        24 ~d~~~L~~~gi~~Vi~l~~~~e~~~~~~~~~~~gi-~~~~ipi~d~~~~~~~~~~~~~~~~~~~i~~~~~~~vlvHC~aG  102 (151)
T 1xri_A           24 ANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-RLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRG  102 (151)
T ss_dssp             HHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTC-EEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSSS
T ss_pred             cCHHHHHHCCCCEEEECCCCCcChhHHHHHHhcCC-eEEecccccccCccccCCHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence            4444444446 78999998655321       112 13567764321111112334444444432 2 467999999999


Q ss_pred             h-HHHHHHH-HHH-cCCC
Q 030104          148 K-RSMMAAT-DLL-NGFA  162 (183)
Q Consensus       148 ~-~s~~a~~-~L~-~G~~  162 (183)
                      . |+..++. .|. .|+.
T Consensus       103 ~~RTg~~~a~~l~~~g~~  120 (151)
T 1xri_A          103 KHRTGCLVGCLRKLQKWC  120 (151)
T ss_dssp             SSHHHHHHHHHHHHTTBC
T ss_pred             CCHHHHHHHHHHHHhCCC
Confidence            6 7775443 344 7764

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A

Probab=93.21  E-value=0.26  Score=34.35  Aligned_cols=81  Identities=17%  Similarity=0.085  Sum_probs=41.7

Q ss_pred             HHHHhCC-CEEEEcCChhhH-hccCCCCceecCcccccCCCCCCCHHHHHHHHh-cCCCCCeEEEEcCCch-HHHH--HH
Q 030104           81 HELLQAG-HRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEIIVGCQSGK-RSMM--AA  154 (183)
Q Consensus        81 ~~~~~~~-~~lIDvR~~~e~-~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~-~l~~~~~ivv~c~~g~-~s~~--a~  154 (183)
                      ..+.+.+ ..|||+++.... ....+ .-+++|+.+.........-...-+.+. ....+.+|+|.|..|. ||..  ++
T Consensus        23 ~~L~~~gI~~Vi~l~~~~~~~~~~~~-~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~~~~a  101 (144)
T 3ezz_A           23 DMLDALGITALLNVSSDCPNHFEGHY-QYKCIPVEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHSQAGISRSATICLA  101 (144)
T ss_dssp             HHHHHTTCCEEEECSSSCCCTTTTTS-EEEECCCCSSSSCCTTTTHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHH
T ss_pred             HHHHHCCCeEEEEccCCCCccCCCCc-eEEEEEcccCCCCChHHHHHHHHHHHHHHHhcCCeEEEECCCCCChhHHHHHH
Confidence            3344456 789999974321 11111 235677654332232222222222222 2345689999999986 7663  34


Q ss_pred             HHHH-cCCC
Q 030104          155 TDLL-NGFA  162 (183)
Q Consensus       155 ~~L~-~G~~  162 (183)
                      ..+. .|++
T Consensus       102 ylm~~~~~~  110 (144)
T 3ezz_A          102 YLMMKKRVR  110 (144)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHcCCC
Confidence            4444 6663

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=93.19  E-value=0.012  Score=43.30  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=20.2

Q ss_pred             CEEEEcCChhhHhccCCCCceecCcc
Q 030104           88 HRYLDVRTPEEFSAGHATGAINVPYM  113 (183)
Q Consensus        88 ~~lIDvR~~~e~~~ghIpgAvnip~~  113 (183)
                      .++||||++.||.    |||+|||..
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg  143 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQL  143 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChh
Confidence            3899999999999    999999974

>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}

Probab=93.07  E-value=0.14  Score=35.94  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=41.7

Q ss_pred             HHHHHhCC-CEEEEcCChhhHhccCCCC---ceecCcccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCc-hHHHH-
Q 030104           80 AHELLQAG-HRYLDVRTPEEFSAGHATG---AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM-  152 (183)
Q Consensus        80 ~~~~~~~~-~~lIDvR~~~e~~~ghIpg---Avnip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~~s~~-  152 (183)
                      ...+.+.+ ..|||++++.+   ...++   -+++|+.+.-....... .+.++.....+..+.+|+|+|..| .||.. 
T Consensus        22 ~~~L~~~gi~~Vi~l~~~~~---~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~   98 (145)
T 2nt2_A           22 LEDLQNRGVRYILNVTREID---NFFPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHSKMGVSRSAST   98 (145)
T ss_dssp             HHHHHHTTEEEEEECCSSSC---CSCBTTBEEEECCCCSSTTCCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHH
T ss_pred             HHHHHHCCCCEEEEeCCCCc---cCCCCCcEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHH
Confidence            34444566 67999997543   11232   25677643221111111 111111212234568999999999 58763 


Q ss_pred             -HHHHHH-cCCC
Q 030104          153 -AATDLL-NGFA  162 (183)
Q Consensus       153 -a~~~L~-~G~~  162 (183)
                       ++..+. .|++
T Consensus        99 v~ayLm~~~~~~  110 (145)
T 2nt2_A           99 VIAYAMKEYGWN  110 (145)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCC
Confidence             345555 7763

>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}

Probab=91.72  E-value=0.28  Score=34.92  Aligned_cols=79  Identities=11%  Similarity=0.125  Sum_probs=39.9

Q ss_pred             HHHHhCC-CEEEEcCChhhHhccCCCC--ceecCcccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCc-hHHHH--H
Q 030104           81 HELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM--A  153 (183)
Q Consensus        81 ~~~~~~~-~~lIDvR~~~e~~~ghIpg--Avnip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~~s~~--a  153 (183)
                      ..+.+.+ ..|||+|+..+..   ..|  -+++|+.+......... .+.++.....+..+.+|+|+|..| .|+..  +
T Consensus        27 ~~L~~~gI~~Vi~l~~~~~~~---~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~~  103 (160)
T 1yz4_A           27 DQLGRNKITHIISIHESPQPL---LQDITYLRIPVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVT  103 (160)
T ss_dssp             HHHHHTTCCEEEEECSSCCCC---CTTCEEEEECCCSCTTSCGGGGHHHHHHHHHHHHHTTCCEEEEETTSSSHHHHHHH
T ss_pred             HHHHHCCCeEEEEccCCCCCc---cCCCeEEEEECCCCCCccHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHHHH
Confidence            3333456 6899999764321   122  25666643221111111 111111111223568999999999 58763  3


Q ss_pred             HHHHH-cCCC
Q 030104          154 ATDLL-NGFA  162 (183)
Q Consensus       154 ~~~L~-~G~~  162 (183)
                      +..+. .|++
T Consensus       104 aylm~~~~~~  113 (160)
T 1yz4_A          104 AYVMTVTGLG  113 (160)
T ss_dssp             HHHHHHHCCC
T ss_pred             HHHHHHcCCC
Confidence            44445 6764

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}

Probab=91.63  E-value=0.21  Score=35.80  Aligned_cols=77  Identities=23%  Similarity=0.334  Sum_probs=40.4

Q ss_pred             HHHHhCC-CEEEEcCChhhHhccCCCC--ceecCcccccCCCCCCCHHHHHHHHh----cCCCCCeEEEEcCCc-hHHHH
Q 030104           81 HELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEVST----RFRKHDEIIVGCQSG-KRSMM  152 (183)
Q Consensus        81 ~~~~~~~-~~lIDvR~~~e~~~ghIpg--Avnip~~~~~~~~~~~~~~~~~~~~~----~l~~~~~ivv~c~~g-~~s~~  152 (183)
                      ..+.+.+ ..|||+|+..+..  ...|  -+++|+.+.-...   ..+.+....+    .+..+.+|+|+|..| .|+..
T Consensus        31 ~~L~~~gI~~Vi~l~~~~~~~--~~~~~~~~~ip~~D~~~~~---~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~  105 (164)
T 2hcm_A           31 ELLVRAGITLCVNVSRQQPGP--RAPGVAELRVPVFDDPAED---LLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAA  105 (164)
T ss_dssp             HHHHHTTEEEEEECSSSCCCC--CCTTCEEEECCCCSCTTSC---CHHHHHHHHHHHHHHHHTTCEEEEEESSSSHHHHH
T ss_pred             HHHHHCCCeEEEEcCCCCCCC--CCCCCEEEEEeCcCCCCch---HHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHHH
Confidence            3344456 6899999865421  1122  3566664221111   1112222211    234578999999999 57773


Q ss_pred             H--HHHHH-cCCC
Q 030104          153 A--ATDLL-NGFA  162 (183)
Q Consensus       153 a--~~~L~-~G~~  162 (183)
                      +  +..+. .|++
T Consensus       106 ~~~ayLm~~~~~~  118 (164)
T 2hcm_A          106 VCTAYLMRHRGHS  118 (164)
T ss_dssp             HHHHHHHHHSCCC
T ss_pred             HHHHHHHHHhCCC
Confidence            3  44555 7764

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*

Probab=91.57  E-value=0.39  Score=35.95  Aligned_cols=74  Identities=18%  Similarity=0.192  Sum_probs=40.6

Q ss_pred             CHHHHHHHHhCC-CEEEEcCChhhHhccCCC---------C--ceecCcccccCCCCCCCHHHHHHHHhc----CCCCCe
Q 030104           76 PVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---------G--AINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDE  139 (183)
Q Consensus        76 ~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIp---------g--Avnip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~  139 (183)
                      ..+++..+.+.+ ..|||+|+..|.....++         |  -+++|+.+.    ...+.+.+......    +..+.+
T Consensus        60 ~~~d~~~L~~~gi~~Vv~l~~~~E~~~~~~~~~~~~~~~~gi~~~~~pi~d~----~~p~~~~~~~~~~~i~~~~~~~~~  135 (212)
T 1fpz_A           60 VQKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADG----GTPDIASCCEIMEELTTCLKNYRK  135 (212)
T ss_dssp             HHHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCTT----CCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCEEEEcCCHHHHHhcCCccHHHHHHHcCCEEEEecCCCC----CCCCHHHHHHHHHHHHHHHhCCCC
Confidence            345556565556 789999998665432211         2  245565321    11122223322222    345789


Q ss_pred             EEEEcCCch-HHHHH
Q 030104          140 IIVGCQSGK-RSMMA  153 (183)
Q Consensus       140 ivv~c~~g~-~s~~a  153 (183)
                      |+|.|..|. |+..+
T Consensus       136 VlVHC~aG~gRTg~~  150 (212)
T 1fpz_A          136 TLIHSYGGLGRSCLV  150 (212)
T ss_dssp             EEEECSSSSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            999999886 76643

>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}

Probab=90.90  E-value=0.42  Score=33.34  Aligned_cols=80  Identities=13%  Similarity=0.089  Sum_probs=39.9

Q ss_pred             HHHHhCC-CEEEEcCChhhHhccCCCC--ceecCcccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCch-HHHH--H
Q 030104           81 HELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSGK-RSMM--A  153 (183)
Q Consensus        81 ~~~~~~~-~~lIDvR~~~e~~~ghIpg--Avnip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g~-~s~~--a  153 (183)
                      ..+.+.+ ..||+++...+  .....|  -+++|+.+......... .+.++.....+..+.+|+|.|..|. ||..  +
T Consensus        23 ~~L~~~gI~~Vl~l~~~~~--~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~sRS~~~v~  100 (144)
T 3s4e_A           23 DTLKKNKVTHILNVAYGVE--NAFLSDFTYKSISILDLPETNILSYFPECFEFIEEAKRKDGVVLVHSNAGVSRAAAIVI  100 (144)
T ss_dssp             HHHHHTTCCEEEECSSSCC--CCCTTTSEEEECCCCCCTTSCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHH
T ss_pred             HHHHHcCCCEEEEccCCCC--CCCCCCCEEEEEeccCCCCCchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHH
Confidence            3344456 68999986332  111112  35667643222221111 1112222222345679999999987 7653  3


Q ss_pred             HHHHH-cCCC
Q 030104          154 ATDLL-NGFA  162 (183)
Q Consensus       154 ~~~L~-~G~~  162 (183)
                      +..+. .|++
T Consensus       101 ayLm~~~~~~  110 (144)
T 3s4e_A          101 GFLMNSEQTS  110 (144)
T ss_dssp             HHHHHHHCCC
T ss_pred             HHHHHHcCCC
Confidence            44444 6663

>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}

Probab=90.88  E-value=0.43  Score=34.21  Aligned_cols=81  Identities=15%  Similarity=0.192  Sum_probs=40.2

Q ss_pred             HHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCc-hHHHH--HHH
Q 030104           81 HELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM--AAT  155 (183)
Q Consensus        81 ~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~~s~~--a~~  155 (183)
                      ..+.+.+ ..|||+|+..+-...++ .-+++|+.+......... .+.++.....+..+.+|+|+|..| .||..  ++.
T Consensus        26 ~~L~~~gI~~Vi~l~~~~~~~~~~i-~~~~ip~~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSg~~~~ay  104 (165)
T 1wrm_A           26 EQLSKNKVTHILSVHDSARPMLEGV-KYLCIPAADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAY  104 (165)
T ss_dssp             HHHHHTTEEEEEECSTTCCCCSTTC-EEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHH
T ss_pred             HHHHHCCCcEEEEecCCCCCCCCCC-eEEEEECCCCCCccHHHHHHHHHHHHHHHHHCCCeEEEECCCCCChhHHHHHHH
Confidence            3344456 67999998653211111 135666643211111111 111111111134578999999999 47775  344


Q ss_pred             HHH-cCCC
Q 030104          156 DLL-NGFA  162 (183)
Q Consensus       156 ~L~-~G~~  162 (183)
                      .+. .|++
T Consensus       105 Lm~~~~~~  112 (165)
T 1wrm_A          105 IMTVTDFG  112 (165)
T ss_dssp             HHHTSSCC
T ss_pred             HHHHcCCC
Confidence            445 6763

>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}

Probab=90.83  E-value=0.72  Score=32.38  Aligned_cols=84  Identities=13%  Similarity=0.040  Sum_probs=42.2

Q ss_pred             HHHHHHhCC-CEEEEcCChhhHhc--cCCC-C--ceecCcccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCc-hHH
Q 030104           79 VAHELLQAG-HRYLDVRTPEEFSA--GHAT-G--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRS  150 (183)
Q Consensus        79 ~~~~~~~~~-~~lIDvR~~~e~~~--ghIp-g--Avnip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~~s  150 (183)
                      ++..+.+.+ ..|||+|+..|...  -..+ |  -+++|..+......... .+..+.....+..+.+|+|+|..| .||
T Consensus        25 d~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~~~~~~ip~~d~~~~~l~~~~~~~~~~i~~~~~~~~~vlvHC~aG~~RS  104 (154)
T 2r0b_A           25 KLPVLQKHGITHIICIRQNIEANFIKPNFQQLFRYLVLDIADNPVENIIRFFPMTKEFIDGSLQMGGKVLVHGNAGISRS  104 (154)
T ss_dssp             GHHHHHHTTCCEEEEEECGGGTTTSSCCCTTTSEEEEEECCSSTTSCCGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHH
T ss_pred             cHHHHHHcCCeEEEEeCCccccccCCCCCcCceeEEEEECCCCCcccHHHHHHHHHHHHHHHHhcCCCEEEEcCCCCChH
Confidence            344444556 68999998766321  1122 2  24566543211111111 111111111133578999999999 487


Q ss_pred             HH--HHHHHH-cCCC
Q 030104          151 MM--AATDLL-NGFA  162 (183)
Q Consensus       151 ~~--a~~~L~-~G~~  162 (183)
                      ..  ++..+. .|.+
T Consensus       105 ~~~~~ayl~~~~~~~  119 (154)
T 2r0b_A          105 AAFVIAYIMETFGMK  119 (154)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCCC
Confidence            74  344445 6764

>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}

Probab=90.03  E-value=0.59  Score=34.37  Aligned_cols=78  Identities=14%  Similarity=0.138  Sum_probs=39.6

Q ss_pred             HHhCC-CEEEEcCChhhHhccCCCC--ceecCcccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCc-hHHHH--HHH
Q 030104           83 LLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM--AAT  155 (183)
Q Consensus        83 ~~~~~-~~lIDvR~~~e~~~ghIpg--Avnip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~~s~~--a~~  155 (183)
                      +.+.+ ..|||++...+  ....+|  -+++|+.+......... .+.++.....+..+.+|+|+|..| .||..  ++.
T Consensus        41 L~~~gIt~Vi~l~~~~~--~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~fI~~~~~~~~~VLVHC~aG~sRS~~vv~ay  118 (188)
T 2esb_A           41 LSSNQITMVINVSVEVV--NTLYEDIQYMQVPVADSPNSRLCDFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAALCLAY  118 (188)
T ss_dssp             HHHTTCCEEEECCSSCC--CCCCTTCEEEECCCCSCTTSCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHH
T ss_pred             HHHCCCcEEEEecCCCC--CcCCCCCEEEEEeCcCCCCccHHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHHHHHHHH
Confidence            33456 68999997432  111233  24566643211111111 111111112234578999999999 58763  344


Q ss_pred             HHH-cCCC
Q 030104          156 DLL-NGFA  162 (183)
Q Consensus       156 ~L~-~G~~  162 (183)
                      .+. .|++
T Consensus       119 Lm~~~~~s  126 (188)
T 2esb_A          119 LMKYHAMS  126 (188)
T ss_dssp             HHHHSCCC
T ss_pred             HHHHcCCC
Confidence            555 7764

>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*

Probab=89.83  E-value=0.48  Score=34.38  Aligned_cols=81  Identities=14%  Similarity=0.228  Sum_probs=39.9

Q ss_pred             HHHhCC-CEEEEcCChhhHhc-----cCC--CC--ceecCcccccCCCCCCC-HHHHHHHHhcCCC-CCeEEEEcCCch-
Q 030104           82 ELLQAG-HRYLDVRTPEEFSA-----GHA--TG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRK-HDEIIVGCQSGK-  148 (183)
Q Consensus        82 ~~~~~~-~~lIDvR~~~e~~~-----ghI--pg--Avnip~~~~~~~~~~~~-~~~~~~~~~~l~~-~~~ivv~c~~g~-  148 (183)
                      .+.+.+ ..|||+++..++..     ...  .|  -+++|+.+.-....... .+.++.....+.. +.+|+|.|..|. 
T Consensus        48 ~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~~VlVHC~~G~~  127 (183)
T 3f81_A           48 KLQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYS  127 (183)
T ss_dssp             HHHHHTCCEEEETTBSSSTTSBCCCTGGGTTTTCEEEECCCCCSTTSCGGGGHHHHHHHHHHHHHSTTCCEEEECSSSSS
T ss_pred             HHHHCCCcEEEECCCCccccccccchhhcccCCCEEEEEEcCCCCcccHHHHHHHHHHHHHHHHHcCCCeEEEECCCCcc
Confidence            333445 78999997655321     001  11  24666643221111111 1112222222233 689999999986 


Q ss_pred             HHHH--HHHHHH-cCCC
Q 030104          149 RSMM--AATDLL-NGFA  162 (183)
Q Consensus       149 ~s~~--a~~~L~-~G~~  162 (183)
                      |+..  ++..+. .|++
T Consensus       128 RSg~~v~ayLm~~~~~~  144 (183)
T 3f81_A          128 RSPTLVIAYLMMRQKMD  144 (183)
T ss_dssp             HHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHhCCC
Confidence            7764  333444 6763

>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}

Probab=89.45  E-value=0.6  Score=34.41  Aligned_cols=80  Identities=18%  Similarity=0.177  Sum_probs=40.4

Q ss_pred             HHHHhCC-CEEEEcCChhhHhccCCCC--ceecCcccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCc-hHHHH--H
Q 030104           81 HELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM--A  153 (183)
Q Consensus        81 ~~~~~~~-~~lIDvR~~~e~~~ghIpg--Avnip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g-~~s~~--a  153 (183)
                      ..+.+.+ ..|||+|+..+  ....+|  -+++|+.+......... .+.++.....+..+.+|+|+|..| .|+..  +
T Consensus        45 ~~L~~~gI~~Vi~l~~~~~--~~~~~gi~y~~ipi~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSgtvv~  122 (190)
T 2wgp_A           45 HLLQARGITCIVNATIEIP--NFNWPQFEYVKVPLADMPHAPIGLYFDTVADKIHSVSRKHGATLVHCAAGVSRSATLCI  122 (190)
T ss_dssp             HHHHHTTCCEEEECCSSSC--CCCCTTSEEEECCCCSSTTSCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHH
T ss_pred             HHHHHCCCcEEEEecCCCC--CCCCCCCEEEEEEcccCCCCCHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence            3344456 68999997532  112233  25566643221111111 111111111123578999999998 47763  3


Q ss_pred             HHHHH-cCCC
Q 030104          154 ATDLL-NGFA  162 (183)
Q Consensus       154 ~~~L~-~G~~  162 (183)
                      +..+. .|++
T Consensus       123 ayLm~~~~~s  132 (190)
T 2wgp_A          123 AYLMKFHNVC  132 (190)
T ss_dssp             HHHHHHHCCC
T ss_pred             HHHHHHcCCC
Confidence            45555 7763

>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*

Probab=88.93  E-value=0.52  Score=33.08  Aligned_cols=79  Identities=13%  Similarity=0.104  Sum_probs=42.5

Q ss_pred             HHHH-HhCC-CEEEEcCChhhHhcc----------CCCCceecCcccccCCCCCCCHHHHHHHHhc----CCCCCeEEEE
Q 030104           80 AHEL-LQAG-HRYLDVRTPEEFSAG----------HATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVG  143 (183)
Q Consensus        80 ~~~~-~~~~-~~lIDvR~~~e~~~g----------hIpgAvnip~~~~~~~~~~~~~~~~~~~~~~----l~~~~~ivv~  143 (183)
                      ..++ .+.+ ..|||+|+..|....          .| .-+++|+.+..   .....+.+....+.    +..+.+|+|+
T Consensus        20 ~~~ll~~~gi~~Vi~l~~~~e~~~~~~~~~~~~~~gi-~~~~~p~~d~~---~~~~~~~~~~~~~~i~~~~~~~~~vlVH   95 (157)
T 3rgo_A           20 TRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGV-EQLRLSTVDMT---GVPTLANLHKGVQFALKYQALGQCVYVH   95 (157)
T ss_dssp             HHHHHHHSCEEEEEEESCCTTTTTSSCCHHHHHHTTC-EEEEECCCTTT---SSCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             hHHHHHHcCCCEEEECccccccccccCCHHHHHHCCC-eEEEecCCCCC---CCChHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            3444 3456 689999987654211          11 23566664321   11222333332222    3456799999


Q ss_pred             cCCch-HHHHH--HHHHH-cCCC
Q 030104          144 CQSGK-RSMMA--ATDLL-NGFA  162 (183)
Q Consensus       144 c~~g~-~s~~a--~~~L~-~G~~  162 (183)
                      |..|. |+..+  +..+. .|++
T Consensus        96 C~~G~~Rsg~~~~a~l~~~~~~~  118 (157)
T 3rgo_A           96 CKAGRSRSATMVAAYLIQVHNWS  118 (157)
T ss_dssp             SSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCChHHHHHHHHHHHHcCCC
Confidence            99998 77744  34444 6764

>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}

Probab=88.72  E-value=0.52  Score=32.99  Aligned_cols=28  Identities=21%  Similarity=0.358  Sum_probs=19.6

Q ss_pred             CCCCeEEEEcCCc-hHHHHH--HHHHH-cCCC
Q 030104          135 RKHDEIIVGCQSG-KRSMMA--ATDLL-NGFA  162 (183)
Q Consensus       135 ~~~~~ivv~c~~g-~~s~~a--~~~L~-~G~~  162 (183)
                      ..+.+|+|+|..| .|+..+  +..+. .|++
T Consensus        81 ~~~~~VlVHC~~G~~RSg~~~~ayl~~~~~~~  112 (149)
T 1zzw_A           81 QCGKGLLIHCQAGVSRSATIVIAYLMKHTRMT  112 (149)
T ss_dssp             HTTCEEEEECSSSSSHHHHHHHHHHHHHSCCC
T ss_pred             HcCCeEEEECCCCCCHHHHHHHHHHHHHcCCC
Confidence            3578999999999 477743  34455 7763

>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}

Probab=88.55  E-value=0.36  Score=33.86  Aligned_cols=27  Identities=30%  Similarity=0.477  Sum_probs=19.1

Q ss_pred             CCCeEEEEcCCc-hHHH-H-HHHHHH-cCCC
Q 030104          136 KHDEIIVGCQSG-KRSM-M-AATDLL-NGFA  162 (183)
Q Consensus       136 ~~~~ivv~c~~g-~~s~-~-a~~~L~-~G~~  162 (183)
                      .+.+|+|+|..| .|+. . ++..+. .|++
T Consensus        84 ~~~~vlVHC~aG~~RSg~~~~ayl~~~~~~~  114 (151)
T 2e0t_A           84 PGGKILVHCAVGVSRSATLVLAYLMLYHHLT  114 (151)
T ss_dssp             TTCCEEEECSSSSHHHHHHHHHHHHHHSCCC
T ss_pred             CCCcEEEECCCCCChHHHHHHHHHHHHcCCC
Confidence            578999999999 5777 3 344445 7764

>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*

Probab=88.45  E-value=2.2  Score=33.85  Aligned_cols=42  Identities=17%  Similarity=0.203  Sum_probs=28.1

Q ss_pred             CcccCHHHHHHHHhCC-CEEEEcCChhhHhcc----CCCCc--eecCcc
Q 030104           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG----HATGA--INVPYM  113 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~g----hIpgA--vnip~~  113 (183)
                      ...++.+++..+.+-+ -.|||.|++.|....    ..+|.  +|+|+.
T Consensus        53 l~~lt~~d~~~L~~lGI~tVIDLR~~~E~~~~~pd~~~~Gi~~~~iPi~  101 (296)
T 1ywf_A           53 LSRLDDAGRATLRRLGITDVADLRSSREVARRGPGRVPDGIDVHLLPFP  101 (296)
T ss_dssp             CTTCCHHHHHHHHHHTCCEEEECCCHHHHHHHCSCCCCTTCEEEECCCC
T ss_pred             cccCCHHHHHHHHhCCCCEEEECcChhhhhccCCCCCCCCCEEEEecCc
Confidence            3456778887776667 789999998885422    33453  567764

>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}

Probab=87.94  E-value=0.71  Score=34.87  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=38.6

Q ss_pred             hCC-CEEEEcCChhh-HhccCCCCceecCcccccCCCCCCC-HHHHHHHHhcCCCCCeEEEEcCCch-HHHH--HHHHHH
Q 030104           85 QAG-HRYLDVRTPEE-FSAGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSGK-RSMM--AATDLL  158 (183)
Q Consensus        85 ~~~-~~lIDvR~~~e-~~~ghIpgAvnip~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ivv~c~~g~-~s~~--a~~~L~  158 (183)
                      +.+ ..|||++.... +....| .-+++|+.+......... .+.++.+...+..+.+|+|+|..|. |+..  +++.+.
T Consensus        29 ~~GIt~VInl~~e~~~~~~~gi-~y~~ipi~D~~~~~l~~~~~~~~~fI~~~~~~~~~VLVHC~aG~sRSgtvv~AYLm~  107 (211)
T 2g6z_A           29 NLHITALLNVSRRTSEACMTHL-HYKWIPVEDSHTADISSHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMK  107 (211)
T ss_dssp             HHTCCEEEECSSCCCCTTCTTS-EEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHH
T ss_pred             HCCCCEEEEcCCCCccccccCC-EEEEeeCCCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCcHHHHHHHHHHH
Confidence            345 68999997532 111111 135667643222221111 1112222222345789999999994 7763  445555


Q ss_pred             -cCCC
Q 030104          159 -NGFA  162 (183)
Q Consensus       159 -~G~~  162 (183)
                       .|++
T Consensus       108 ~~g~s  112 (211)
T 2g6z_A          108 TKQFR  112 (211)
T ss_dssp             HHCCC
T ss_pred             HcCCC
Confidence             6763

>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A

Probab=87.30  E-value=2.4  Score=31.42  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             CCCeEEEEcCCch-HHHH--HHHHHH-cCCC
Q 030104          136 KHDEIIVGCQSGK-RSMM--AATDLL-NGFA  162 (183)
Q Consensus       136 ~~~~ivv~c~~g~-~s~~--a~~~L~-~G~~  162 (183)
                      .+.+|+|.|..|. ||..  ++..+. .|++
T Consensus       130 ~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~s  160 (205)
T 2pq5_A          130 PQGRVLVHCAMGVSRSATLVLAFLMIYENMT  160 (205)
T ss_dssp             TTCCEEEECSSSSSHHHHHHHHHHHHHSCCC
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHcCCC
Confidence            5679999999994 7773  344455 6763

>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}

Probab=86.82  E-value=2.8  Score=31.52  Aligned_cols=28  Identities=29%  Similarity=0.527  Sum_probs=19.5

Q ss_pred             CCCCeEEEEcCCch-HHHH--HHHHHH-cCCC
Q 030104          135 RKHDEIIVGCQSGK-RSMM--AATDLL-NGFA  162 (183)
Q Consensus       135 ~~~~~ivv~c~~g~-~s~~--a~~~L~-~G~~  162 (183)
                      ..+.+|+|+|..|. ||..  +++.+. .|++
T Consensus       137 ~~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~s  168 (219)
T 2y96_A          137 DDHSKILVHCVMGRSRSATLVLAYLMIHKDMT  168 (219)
T ss_dssp             STTCCEEEECSSSSSHHHHHHHHHHHHHSCCC
T ss_pred             ccCCeEEEECCCCCCHHHHHHHHHHHHHcCCC
Confidence            45789999999994 7763  344455 7763

>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}

Probab=86.12  E-value=0.64  Score=33.25  Aligned_cols=28  Identities=7%  Similarity=0.248  Sum_probs=19.5

Q ss_pred             CCCCeEEEEcCCch-HHH--HHHHHHH-cCCC
Q 030104          135 RKHDEIIVGCQSGK-RSM--MAATDLL-NGFA  162 (183)
Q Consensus       135 ~~~~~ivv~c~~g~-~s~--~a~~~L~-~G~~  162 (183)
                      ..+.+|+|.|..|. ||.  .++..+. .|++
T Consensus        85 ~~~~~VlVHC~~G~sRS~~vv~ayLm~~~~~s  116 (161)
T 3emu_A           85 QRKEGVLIISGTGVNKAPAIVIAFLMYYQRLS  116 (161)
T ss_dssp             HTTCEEEEEESSSSSHHHHHHHHHHHHHTTCC
T ss_pred             hcCCeEEEEcCCCCcHHHHHHHHHHHHHhCCC
Confidence            45689999999986 765  3444555 7764

>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A

Probab=85.43  E-value=0.7  Score=32.72  Aligned_cols=79  Identities=18%  Similarity=0.230  Sum_probs=39.5

Q ss_pred             HHHHHhCC-CEEEEcCChhh--Hhc-cCCCCceecCcccccCCCCCCCHHHHHHHHh----cCCCCCeEEEEcCCc-hHH
Q 030104           80 AHELLQAG-HRYLDVRTPEE--FSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVST----RFRKHDEIIVGCQSG-KRS  150 (183)
Q Consensus        80 ~~~~~~~~-~~lIDvR~~~e--~~~-ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~----~l~~~~~ivv~c~~g-~~s  150 (183)
                      ...+.+.+ ..|||+|+...  |.. |.| .-+++|+.+.....+   .+.+....+    .+..+.+|+|.|..| .||
T Consensus        24 ~~~L~~~gI~~Vi~l~~~~~~~~~~~~~i-~~~~ipi~D~~~~~l---~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS   99 (155)
T 2hxp_A           24 LESLAKLGIRYILNVTPNLPNFFEKNGDF-HYKQIPISDHWSQNL---SRFFPEAIEFIDEALSQNCGVLVHSLAGVSRS   99 (155)
T ss_dssp             HHHHHHTTEEEEEECSSSCCCTTTTCTTC-EEEECCCCGGGGGGH---HHHHHHHHHHHHHHHHTTCEEEEECSSSSSHH
T ss_pred             HHHHHHCCCCEEEEeCCCCcccccCCCCe-EEEEEECccCCCCCH---HHHHHHHHHHHHHHHHcCCcEEEECCCCCchh
Confidence            33344456 67899997421  211 112 135677643221111   111222222    123578999999999 587


Q ss_pred             HHH--HHHHH-cCCC
Q 030104          151 MMA--ATDLL-NGFA  162 (183)
Q Consensus       151 ~~a--~~~L~-~G~~  162 (183)
                      ..+  +..+. .|++
T Consensus       100 ~~vv~ayLm~~~~~~  114 (155)
T 2hxp_A          100 VTVTVAYLMQKLHLS  114 (155)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCCC
Confidence            733  34444 6653

>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}

Probab=85.01  E-value=4.8  Score=28.09  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=17.8

Q ss_pred             CCCeEEEEcCCch-HHHH-HHHHHH-c-CCC
Q 030104          136 KHDEIIVGCQSGK-RSMM-AATDLL-N-GFA  162 (183)
Q Consensus       136 ~~~~ivv~c~~g~-~s~~-a~~~L~-~-G~~  162 (183)
                      ++.+|+|.|..|. |+.. ++..|. . |++
T Consensus       108 ~~~~vlVHC~aG~~RTg~~~a~~L~~~~~~~  138 (167)
T 3s4o_A          108 PPPTIGVHCVAGLGRAPILVALALVEYGNVS  138 (167)
T ss_dssp             CCCEEEEECSSSSSHHHHHHHHHHHHTTCCC
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHhCCCC
Confidence            3789999999886 6653 333333 4 664

>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A

Probab=85.00  E-value=6  Score=28.67  Aligned_cols=83  Identities=18%  Similarity=0.221  Sum_probs=42.2

Q ss_pred             cCHHH-HHHHHhCC-CEEEEcCChhh----HhccCCCCceecCcccccCCCCCCCHHHHHHHHhc------CCCCCeEEE
Q 030104           75 VPVRV-AHELLQAG-HRYLDVRTPEE----FSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR------FRKHDEIIV  142 (183)
Q Consensus        75 i~~~~-~~~~~~~~-~~lIDvR~~~e----~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~------l~~~~~ivv  142 (183)
                      .+.++ +..+.+.+ ..|||++++.+    +..-+| .-+++|+.+    +.....+.+......      ..++.+|+|
T Consensus        48 ~t~~~~~~~L~~~gi~~Iv~l~~~~~~~~~~~~~~i-~~~~~pi~d----~~~~~~~~~~~~~~~i~~~~~~~~~~~VlV  122 (189)
T 3rz2_A           48 ATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGI-HVLDWPFDD----GAPPSNQIVDDWLSLVKIKFREEPGCCIAV  122 (189)
T ss_dssp             TTHHHHHHHHHTTTEEEEEECSCCCSCCHHHHHSSC-EEEECCCCS----SSCCCSHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred             ccHHHHHHHHHHcCCcEEEEeCCCcCCHHHHHHcCc-EEEEecCCC----CCCCCHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence            34444 44444555 68999997532    222222 124555432    222222333332222      146789999


Q ss_pred             EcCCch-HHHH-HHHHHH-cCCC
Q 030104          143 GCQSGK-RSMM-AATDLL-NGFA  162 (183)
Q Consensus       143 ~c~~g~-~s~~-a~~~L~-~G~~  162 (183)
                      .|..|. |+.. ++..|. .|++
T Consensus       123 HC~aG~gRSg~~va~~L~~~g~~  145 (189)
T 3rz2_A          123 HCVAGLGRAPVLVALALIEGGMK  145 (189)
T ss_dssp             ECSSSSTTHHHHHHHHHHTTTCC
T ss_pred             ECCCCCCHHHHHHHHHHHHcCCC
Confidence            999886 6664 344444 6653

>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}

Probab=84.49  E-value=1.3  Score=32.02  Aligned_cols=28  Identities=21%  Similarity=0.358  Sum_probs=19.6

Q ss_pred             CCCCeEEEEcCCc-hHHHHH--HHHHH-cCCC
Q 030104          135 RKHDEIIVGCQSG-KRSMMA--ATDLL-NGFA  162 (183)
Q Consensus       135 ~~~~~ivv~c~~g-~~s~~a--~~~L~-~G~~  162 (183)
                      ..+.+|+|+|..| .||..+  +..+. .|++
T Consensus        85 ~~~~~VlVHC~aG~~RSg~~v~ayLm~~~~~~  116 (177)
T 2oud_A           85 QCGKGLLIHCQAGVSRSATIVIAYLMKHTRMT  116 (177)
T ss_dssp             HTTCEEEEECSSSSSHHHHHHHHHHHHTSCCC
T ss_pred             hcCCcEEEEcCCCCCchHHHHHHHHHHHcCCC
Confidence            3578999999998 477743  34455 6764

>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}

Probab=83.87  E-value=2  Score=31.18  Aligned_cols=46  Identities=20%  Similarity=0.211  Sum_probs=32.6

Q ss_pred             HHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104          126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA  172 (183)
Q Consensus       126 ~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~  172 (183)
                      .+..++....++.+++|||++-..+..++..|. .|+ .+..+.|++.
T Consensus        35 ~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~-~~~~lhg~~~   81 (185)
T 2jgn_A           35 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRS   81 (185)
T ss_dssp             HHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTC-CEEEEC----
T ss_pred             HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEeCCCC
Confidence            344444445567789999999888999999999 998 6788888864

>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}

Probab=82.41  E-value=2.5  Score=31.14  Aligned_cols=74  Identities=15%  Similarity=0.235  Sum_probs=34.8

Q ss_pred             CEEEEcCChhhH-hccCCCCceecCcccccCCCCCCCHHHHHHHHhc-CCCCCeEEEEcCCc-hHHHHHH--HHHH-cCC
Q 030104           88 HRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FRKHDEIIVGCQSG-KRSMMAA--TDLL-NGF  161 (183)
Q Consensus        88 ~~lIDvR~~~e~-~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ivv~c~~g-~~s~~a~--~~L~-~G~  161 (183)
                      ..|||+|+..+. ...++ .-+++|..+.....+...-..+...+.. ...+.+|+|.|..| .|+..++  ..+. .|.
T Consensus        75 ~~Vi~l~~~~~~~~~~~~-~~~~~p~~d~~~~~l~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~v~~yL~~~~~~  153 (195)
T 2q05_A           75 KYVLNLTMDKYTLPNSNI-NIIHIPLVDDTTTDISKYFDDVTAFLSKCDQRNEPVLVHCAAGVNRSGAMILAYLMSKNKE  153 (195)
T ss_dssp             SEEEECSSSCCCCTTCCC-EEEECCCCCSSSCCCGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCCCCcccCCc-EEEEEEcCCCCcccHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCChHHHHHHHHHHHHhCC
Confidence            378999986532 11111 1245665422111111111112222222 23568999999998 4766432  2333 565


Q ss_pred             C
Q 030104          162 A  162 (183)
Q Consensus       162 ~  162 (183)
                      .
T Consensus       154 ~  154 (195)
T 2q05_A          154 S  154 (195)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*

Probab=80.38  E-value=3.2  Score=28.97  Aligned_cols=71  Identities=17%  Similarity=0.181  Sum_probs=36.4

Q ss_pred             HHHHHHHHhCC-CEEEEcCChhhHhcc-----------CCCC--ceecCcccccCCCCCCCHHHHHHHHhcCC--CCCeE
Q 030104           77 VRVAHELLQAG-HRYLDVRTPEEFSAG-----------HATG--AINVPYMYRVGSGMTKNLKFVEEVSTRFR--KHDEI  140 (183)
Q Consensus        77 ~~~~~~~~~~~-~~lIDvR~~~e~~~g-----------hIpg--Avnip~~~~~~~~~~~~~~~~~~~~~~l~--~~~~i  140 (183)
                      .+++..+.+.+ ..|||+|+..|....           .-.|  -+++|+.+.    ...+.+.+......+.  .... 
T Consensus        18 ~~d~~~L~~~gi~~Vi~l~~~~e~~~~~~~~~~~~~~~~~~gi~~~~~p~~d~----~~p~~~~~~~~~~~i~~~~~~~-   92 (161)
T 2i6j_A           18 ENEILEWRKEGVKRVLVLPEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPDG----GVPSDSQFLTIMKWLLSEKEGN-   92 (161)
T ss_dssp             HHHHHHHHHHTCCEEEECSCHHHHHHHHSCHHHHHHHHHHTTCEEEECCCCTT----CCCCHHHHHHHHHHHHHCCTTE-
T ss_pred             HHHHHHHHHCCCCEEEEcCchhhhhhhccchhhHHHHHHHcCceEEEecCCCC----CCCChHHHHHHHHHHHHhCCCC-
Confidence            34555555556 789999998664321           1122  345665311    1122233333333221  1223 


Q ss_pred             EEEcCCch-HHHH
Q 030104          141 IVGCQSGK-RSMM  152 (183)
Q Consensus       141 vv~c~~g~-~s~~  152 (183)
                      +|+|..|. |+..
T Consensus        93 lVHC~aG~~Rtg~  105 (161)
T 2i6j_A           93 LVHCVGGIGRTGT  105 (161)
T ss_dssp             EEECSSSSHHHHH
T ss_pred             EEECCCCCCHHHH
Confidence            99999984 7664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	8e-33
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	2e-13
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	2e-10
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	4e-10
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	7e-10
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	4e-09
d1e0ca2	136	c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacte	1e-08
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	2e-08
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	6e-08
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	2e-07
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	2e-07
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	4e-07
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	7e-07
d1okga2	139	c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtran	8e-07
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	8e-07
d1okga1	156	c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransf	5e-05
d1urha2	120	c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtran	6e-05
d1uara2	141	c.46.1.2 (A:145-285) Sulfurtransferase {Thermus th	6e-05
d1rhsa2	144	c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [	2e-04
d1urha1	147	c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransf	4e-04
d1rhsa1	149	c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [Ta	0.001

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  111 bits (279), Expect = 8e-33
 Identities = 78/117 (66%), Positives = 91/117 (77%), Gaps = 1/117 (0%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 126
           E   VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F
Sbjct: 2   EESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDF 61

Query: 127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
           +E+VS+ F + D IIVGCQSG RS+ A TDLL  GF G+ DI GG++AW +NGLPT+
Sbjct: 62  LEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 118

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 61.3 bits (148), Expect = 2e-13
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 15/111 (13%)

Query: 74  SVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 132
            + V  AH+ LQ     L D+R P+ F+ GHA  A ++                      
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTL------------GAFMR 53

Query: 133 RFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE 182
                  ++V C  G  S  AA  LL  G+  +  I GGF AW++   P E
Sbjct: 54  DNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE 103

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.1 bits (129), Expect = 2e-10
 Identities = 24/121 (19%), Positives = 35/121 (28%), Gaps = 14/121 (11%)

Query: 66  LEAVGVPTSVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN 123
           +EA     S+       LL   A    LD R  +E+      G I+VP            
Sbjct: 17  VEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAEL-------- 68

Query: 124 LKFVEEVSTRFRKHDEIIVGCQSGKR-SMMAATDLLNGFAG-ITDIAGGFAAWRQNGLPT 181
              +            +IV C    R  +   + L  G    +  +  G   W   G   
Sbjct: 69  --VLRVAELAPDPRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQL 126

Query: 182 E 182
           E
Sbjct: 127 E 127

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 53.3 bits (127), Expect = 4e-10
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 8/112 (7%)

Query: 79  VAHELLQAGHRYLDVRTP-EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-- 135
           V   L     R L+V      +  GH  GA  + +       + ++    EE +      
Sbjct: 14  VQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERL 73

Query: 136 ---KHDEIIVGCQSG--KRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTE 182
                  +++         +        NG   +  + GG   W + G P  
Sbjct: 74  GISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLT 125

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 7e-10
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 15/98 (15%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           +D R P E+  GH  GA+N+     +   +   L     V T  ++   +     S +R 
Sbjct: 48  IDCRYPYEYEGGHIKGAVNLH----MEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERG 103

Query: 151 MMAATDLLN-----------GFAGITDIAGGFAAWRQN 177
                 +              +  +  + GG+  +   
Sbjct: 104 PRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK 141

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 50.6 bits (120), Expect = 4e-09
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 16/110 (14%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSA---GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
           A++LLQ       +DVR P+E  A          ++             L          
Sbjct: 30  AYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLDP-------- 81

Query: 135 RKHDEIIVGCQSGKRSMMAATDLLN-GFAGITDIAGGFAAWRQNGLPTEP 183
                ++V C++  R+ +A   L   GF  I +  GG   W + GLP+  
Sbjct: 82  --EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD 129

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 49.5 bits (117), Expect = 1e-08
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 22/135 (16%)

Query: 70  GVPTSV-----PVRVAHELLQA----GHRYLDVRTPEEFS--------AGHATGAINVPY 112
           G P ++     P      LL           D R+P+E+          GH  GA+N  +
Sbjct: 1   GGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEW 60

Query: 113 MYRVGSGMTKN---LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDL-LNGFAGITDIA 168
              +                         EI+  CQ+  RS +        G+  +   A
Sbjct: 61  TAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYA 120

Query: 169 GGFAAW-RQNGLPTE 182
           G +  W      P E
Sbjct: 121 GSWGEWGNHPDTPVE 135

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.8 bits (115), Expect = 2e-08
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 13/108 (12%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           P  +A  L + G R LD      ++  H  GA  V                 ++   R  
Sbjct: 9   PTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQL------------KQALERLG 56

Query: 136 KHDEIIVGCQSGKR-SMMAATDLLNGFAGITDIAGGFAAWRQNGLPTE 182
             +  ++ C S        A         +  + GG +AW   GLPTE
Sbjct: 57  TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTE 104

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 6e-08
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 22/128 (17%)

Query: 71  VPTSVPVRVAHELLQAGH---RYLDVRTPEEFSAGHATGAINVPY----MYRVGSGMTKN 123
           +  S  V   +E L+ G+     +D R  E + + H   AINV      + R+  G    
Sbjct: 14  MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPV 73

Query: 124 LKFVE-----EVSTRFRKHDEIIVGCQSGK----------RSMMAATDLLNGFAGITDIA 168
                     +  TR    D +++  +S               +    L +       + 
Sbjct: 74  RALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLE 133

Query: 169 GGFAAWRQ 176
           GGF+ ++ 
Sbjct: 134 GGFSKFQA 141

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 8/126 (6%), Positives = 32/126 (25%), Gaps = 22/126 (17%)

Query: 74  SVPVRVAHELLQAGHRY---LDVRTPEEFSAGHATGAINVPY-----MYRVGSGMTKNLK 125
           ++  +  + ++   +     +D R  +++       +++VP                   
Sbjct: 2   AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPD 61

Query: 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN--------------GFAGITDIAGGF 171
             ++   +    + +++         +     L                      + GG+
Sbjct: 62  DSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGY 121

Query: 172 AAWRQN 177
             W   
Sbjct: 122 ENWLLC 127

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 2e-07
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 16/99 (16%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH   A+N+P      S + K+            K   +I  C+ S +R
Sbjct: 48  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCS----LDKRVILIFHCEFSSER 103

Query: 150 SMMAATDLLN-----------GFAGITDIAGGFAAWRQN 177
                  +              +  +  + GG+  +   
Sbjct: 104 GPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ 142

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 4e-07
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 14/109 (12%)

Query: 75  VPVRVAHELLQA-----GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE 129
           + VR  H++  A         LDVR  + F+  H   A N+P          +  +    
Sbjct: 1   IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRRDTP 60

Query: 130 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWRQNG 178
           ++          V  Q              G++ +  + GG + WR  G
Sbjct: 61  ITVYDDGEGLAPVAAQRLHD---------LGYSDVALLDGGLSGWRNAG 100

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 7e-07
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 14/114 (12%)

Query: 74  SVPVRVAHELLQAGHR---YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
            + +    +      R    LDVRTPEE+ AGH  G+ + P                E  
Sbjct: 24  RLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQL----------VQETD 73

Query: 131 STRFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWR-QNGLPTEP 183
                +   +++    G R+ M+A+ L      +  + G   A   + G  + P
Sbjct: 74  HVASVRGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEADFSERGAWSAP 127

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 44.4 bits (104), Expect = 8e-07
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 24/116 (20%)

Query: 91  LDVRTPEEFS-----------AGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFR--- 135
            D R+ + F+            GH  GA N+PY   + + G  K L+  EE+        
Sbjct: 16  TDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVV 75

Query: 136 -------KHDEIIVGCQSGKRSMMAATDL-LNGFAGITDIAGGFAAW-RQNGLPTE 182
                       +  C SG  + +    +   G        G ++ +      P  
Sbjct: 76  QGAGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIM 131

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 44.3 bits (103), Expect = 8e-07
 Identities = 16/113 (14%), Positives = 28/113 (24%), Gaps = 9/113 (7%)

Query: 79  VAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM---------YRVGSGMTKNLKFVEE 129
           +   L       +D+ +   ++ GH  GA  V              +     +      E
Sbjct: 16  LQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGE 75

Query: 130 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTE 182
           +  R      +      G          + G      + GG  AW     P  
Sbjct: 76  LGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLS 128

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 39.3 bits (91), Expect = 5e-05
 Identities = 19/114 (16%), Positives = 28/114 (24%), Gaps = 20/114 (17%)

Query: 89  RYLDVRT--------PEEFSAGHATGAINV--------PYMYRVGSGMTKNLKFVEEVST 132
           R +D R           +++  H   AI                            +   
Sbjct: 23  RIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCM 82

Query: 133 RFRKHDE---IIVGCQSGKRSMMAATDLLNGF-AGITDIAGGFAAWRQNGLPTE 182
                 E   +    + G         +LN   A    I GGF A +  GL  E
Sbjct: 83  ANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQACKAAGLEME 136

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (89), Expect = 6e-05
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 18/116 (15%)

Query: 77  VRVAHELLQAGHRY----LDVRTPEEFSA-------GHATGAI-NVPYMYRVGSGMTKNL 124
           V    ++L A H      +D R    F+A       G   G I     +          L
Sbjct: 5   VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGEL 64

Query: 125 KFVEEVSTRFR-----KHDEIIVGCQSGKRSMMAATDL-LNGFAGITDIAGGFAAW 174
           K  +E+   F          IIV C SG  + +    L       +    G ++ W
Sbjct: 65  KTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 120

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 22/114 (19%)

Query: 91  LDVRTPEEFS----------------AGHATGAINVP---YMYRVGSGMTKNLKFVEEVS 131
           +DVR+P+E+                 AGH  GA N+P    +   G+  +          
Sbjct: 24  VDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEP 83

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDL--LNGFAGITDIAGGFAAW-RQNGLPTE 182
               K  +I+V C+  +RS  +   L  L G+  + +  G +  W    G+P  
Sbjct: 84  LGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIA 137

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 17/121 (14%), Positives = 28/121 (23%), Gaps = 16/121 (13%)

Query: 79  VAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNL----------KFVE 128
           V   L     + +D R    +                +   +              K  E
Sbjct: 18  VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPE 77

Query: 129 EVSTRFR-----KHDEIIVGCQSGKRSMMAATDL-LNGFAGITDIAGGFAAWRQNGLPTE 182
           E+   F          +I  C+ G  +   A    L G   +    G +  W     P  
Sbjct: 78  ELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPET 137

Query: 183 P 183
            
Sbjct: 138 W 138

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 19/113 (16%)

Query: 89  RYLDVRTP----------EEFSAGHATGAINVPYM--YRVGSGMTKNLKFVEEVSTRFRK 136
           + +D R            +E+  GH  GA+           S +   L   E  +   R+
Sbjct: 20  QIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRE 79

Query: 137 H-----DEIIVGCQS--GKRSMMAATDLLNGFAGITDIAGGFAAWRQNGLPTE 182
                   +IV  +                G   ++ + GG A W+++ L  E
Sbjct: 80  LGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLE 132

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 23/126 (18%), Positives = 36/126 (28%), Gaps = 24/126 (19%)

Query: 81  HELLQAGH-----RYLDVRTP--------EEFSAGHATGAINVPYMY------RVGSGMT 121
            E ++AG      R LD            +E+   H  GA                  + 
Sbjct: 16  AESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLP 75

Query: 122 KNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNGF--AGITDIA---GGFAAWRQ 176
               F + V +    +D  +V           A  +   F   G   ++   GGF  W +
Sbjct: 76  SEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLK 135

Query: 177 NGLPTE 182
            G P  
Sbjct: 136 EGHPVT 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.96
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.93
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.93
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.92
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.92
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.91
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.91
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.91
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.9
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.9
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.9
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.89
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.88
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.86
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.86
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.85
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.77
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.72
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.67
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	95.04
d1fpza_	176	Kinase associated phosphatase (kap) {Human (Homo s	91.54
d1m3ga_	145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	91.42
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	90.57
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	89.47
d1t5la2	181	Nucleotide excision repair enzyme UvrB {Bacillus c	85.27
d1jl3a_	137	Arsenate reductase ArsC {Bacillus subtilis [TaxId:	83.36
d1jr6a_	138	HCV helicase domain {Human hepatitis C virus (HCV)	82.65
d1ohea2	182	Proline directed phosphatase CDC14b2 {Human (Homo	82.62

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=2.7e-29  Score=176.79  Aligned_cols=114  Identities=68%  Similarity=1.118  Sum_probs=103.5

Q ss_pred             CCCCcccCHHHHHHHHhCCCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104           69 VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (183)
                      ...+..++++++.++++++.+|||||++.||..||||||+|+|+............+++.+....++++++|||||++|.
T Consensus         4 ~~~p~~i~~~~a~~l~~~g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~C~~G~   83 (119)
T d1tq1a_           4 SRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG   83 (119)
T ss_dssp             SCCCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCS
T ss_pred             ccCCCccCHHHHHHHHHCcCEEEECCCHHHHHcCCCCCccchhhcccccccccccHHHHHHHHHhcCCCcEEEEEcCCcC
Confidence            35677899999999999899999999999999999999999998765555566677888888888899999999999999


Q ss_pred             HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          149 RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ||..++..|. .||+||++|+||+.+|.++|+|++
T Consensus        84 rs~~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~e  118 (119)
T d1tq1a_          84 RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  118 (119)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             cHHHHHHHHHhcccCCeEEecChHHHHHHCCCCcc
Confidence            9999999999 999999999999999999999997

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.2e-26  Score=160.42  Aligned_cols=98  Identities=31%  Similarity=0.505  Sum_probs=89.0

Q ss_pred             CcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCchHH
Q 030104           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~~s  150 (183)
                      .+.|+++++.++++++ ++|||||++.||..||||||+|+|.            +.+......++++++|||||.+|.+|
T Consensus         4 ~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~rs   71 (108)
T d1gmxa_           4 FECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTN------------DTLGAFMRDNDFDTPVMVMCYHGNSS   71 (108)
T ss_dssp             CEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCH------------HHHHHHHHHSCTTSCEEEECSSSSHH
T ss_pred             CCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCcccccc------------hhHHHHhhhccccCcccccCCCChHH
Confidence            4579999999988665 9999999999999999999999998            67777888899999999999999999


Q ss_pred             HHHHHHHH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          151 MMAATDLL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       151 ~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ..++..|. .||++|++|+||+.+|.++ +|++
T Consensus        72 ~~~a~~L~~~G~~~v~~l~GG~~~W~~~-~p~e  103 (108)
T d1gmxa_          72 KGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE  103 (108)
T ss_dssp             HHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGG
T ss_pred             HHHHHHHHHcCCCCEEEEcChHHHHHHc-CCCc
Confidence            99999999 9999999999999999754 7764

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.93  E-value=3.8e-26  Score=164.18  Aligned_cols=112  Identities=21%  Similarity=0.329  Sum_probs=93.0

Q ss_pred             CCcccCHHHHHHHHhCC-CEEEEcCChhhHh--------ccCCCCceecCcccccC-CCCCCCHHHHHHHHhc--CCCCC
Q 030104           71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFS--------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHD  138 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~--------~ghIpgAvnip~~~~~~-~~~~~~~~~~~~~~~~--l~~~~  138 (183)
                      ....++.+++++.++++ ++|||+|++.||.        .||||||+|+|+...+. .+...+.+.++..+..  +++++
T Consensus        10 ~~~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~   89 (136)
T d1e0ca2          10 DEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDK   89 (136)
T ss_dssp             STTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTS
T ss_pred             CCceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhccccccchhHHHhhhhhhcccCCCC
Confidence            34578999999888664 8999999999996        79999999999876553 2333344555665554  68899


Q ss_pred             eEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh-CCCCCC
Q 030104          139 EIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ-NGLPTE  182 (183)
Q Consensus       139 ~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~-~g~pv~  182 (183)
                      +||+||++|.+|..+++.|+ +||+||++|+|||.+|.+ .+.|||
T Consensus        90 ~vV~yC~~G~~a~~~~~~l~~~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          90 EIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             ceEEeCCChHHHHHHHHHHHHcCCCCcEEecCCHHHHhcCCCCCCc
Confidence            99999999999999999999 999999999999999977 489986

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.1e-25  Score=160.20  Aligned_cols=101  Identities=24%  Similarity=0.389  Sum_probs=87.1

Q ss_pred             CCcccCHHHHHHHHhCC--CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcCC
Q 030104           71 VPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQS  146 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~  146 (183)
                      ..+.|++++++++++.+  ++|||||++.||..||||||+|||..            .+...+..+  +++++||+||.+
T Consensus        22 ~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi~ip~~------------~l~~~~~~l~~~~~~~iV~~C~~   89 (136)
T d1yt8a1          22 HTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGA------------ELVLRVAELAPDPRTRVIVNCAG   89 (136)
T ss_dssp             CCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCEECCGG------------GHHHHHHHHCCSTTSEEEEECSS
T ss_pred             CCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCchhhhhh------------HHHHHhhcccccccceEEEEcCC
Confidence            34579999999988654  79999999999999999999999984            334444443  467889999999


Q ss_pred             chHHHHHHHHHH-cCCCC-eeEccccHHHhhhCCCCCCC
Q 030104          147 GKRSMMAATDLL-NGFAG-ITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       147 g~~s~~a~~~L~-~G~~~-v~~l~GG~~~W~~~g~pv~~  183 (183)
                      |.+|..++..|+ .||+| |++|.||+.+|..+|+|+++
T Consensus        90 g~rs~~aa~~L~~~G~~~~V~~L~GG~~~W~~~G~pve~  128 (136)
T d1yt8a1          90 RTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEH  128 (136)
T ss_dssp             SHHHHHHHHHHHHTTCSSCEEEETTHHHHHHHTTCCCBC
T ss_pred             CCchHHHHHHHHHcCCCceEEEeCCcHHHHHHCCCCcee
Confidence            999999999999 99986 99999999999999999974

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.5e-25  Score=164.60  Aligned_cols=102  Identities=21%  Similarity=0.310  Sum_probs=91.7

Q ss_pred             CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (183)
                      +....|++++++++++++ .+|||||+..||..||||||+|+|.            ..+......++++++||+||.+|.
T Consensus         2 P~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga~~~~~------------~~~~~~~~~~~~~~~vv~~c~~g~   69 (157)
T d1yt8a3           2 PRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLR------------SQLKQALERLGTAERYVLTCGSSL   69 (157)
T ss_dssp             CCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCG------------GGHHHHHHHHCCCSEEEEECSSSH
T ss_pred             CCCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccceeccc------------ccccccccccccCcceeeccCCcc
Confidence            456789999999998765 8999999999999999999999998            344555566788999999999999


Q ss_pred             HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          149 RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       149 ~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +|..++..|. .||++|++|+||+.+|.++|+|+++
T Consensus        70 rs~~~a~~l~~~G~~~v~~L~GG~~~W~~aGlp~~~  105 (157)
T d1yt8a3          70 LARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTED  105 (157)
T ss_dssp             HHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBC
T ss_pred             hHHHHHHHHhcccCceEEEecCCHHHHhhCCCCCcC
Confidence            9999999999 9999999999999999999999874

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.6e-24  Score=147.66  Aligned_cols=95  Identities=25%  Similarity=0.357  Sum_probs=79.3

Q ss_pred             ccCHHHHHHHHh-C-CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc-CCCCCeEEEEcCCchHH
Q 030104           74 SVPVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FRKHDEIIVGCQSGKRS  150 (183)
Q Consensus        74 ~i~~~~~~~~~~-~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ivv~c~~g~~s  150 (183)
                      +.|.+++++.+. + +++|||||++.||..||||||+|+|.+           .+....... .+++++||+||.+|.+|
T Consensus         3 v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi~~~~~-----------~~~~~~~~~~~~~~~~vv~~~~~g~~s   71 (101)
T d1yt8a2           3 VRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS-----------RLELEIHARVPRRDTPITVYDDGEGLA   71 (101)
T ss_dssp             EECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGG-----------GHHHHHHHHSCCTTSCEEEECSSSSHH
T ss_pred             cCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCccccccc-----------chhhhhhhcccccCceeeeccchhhhH
Confidence            567888887663 3 489999999999999999999999984           222222222 35678999999999999


Q ss_pred             HHHHHHHH-cCCCCeeEccccHHHhhhCCC
Q 030104          151 MMAATDLL-NGFAGITDIAGGFAAWRQNGL  179 (183)
Q Consensus       151 ~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~  179 (183)
                      ..+++.|. .||+||++|+||+.+|.++|.
T Consensus        72 ~~~~~~l~~~G~~nV~~l~GG~~~W~~aGg  101 (101)
T d1yt8a2          72 PVAAQRLHDLGYSDVALLDGGLSGWRNAGG  101 (101)
T ss_dssp             HHHHHHHHHTTCSSEEEETTHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCcEEEeCChHHHHHHCcC
Confidence            99999999 999999999999999999874

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.9e-24  Score=156.53  Aligned_cols=108  Identities=19%  Similarity=0.336  Sum_probs=92.7

Q ss_pred             cccCHHHHHHHHhC-CCEEEEcCChhhHh------------ccCCCCceecCccccc-CCCCCCCHHHHHHHHhc--CCC
Q 030104           73 TSVPVRVAHELLQA-GHRYLDVRTPEEFS------------AGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRK  136 (183)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~lIDvR~~~e~~------------~ghIpgAvnip~~~~~-~~~~~~~~~~~~~~~~~--l~~  136 (183)
                      ..++.+++.+.+++ +++|||+|++.||.            .||||||+|+|+..++ ..+...+.+.+++++..  +++
T Consensus        11 ~i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~gi~~   90 (144)
T d1rhsa2          11 LLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDL   90 (144)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCT
T ss_pred             HeecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhhcccCCHHHHHHHHHHcCCCC
Confidence            46788888777654 59999999999996            6999999999998665 34556778888888765  688


Q ss_pred             CCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCC
Q 030104          137 HDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLP  180 (183)
Q Consensus       137 ~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~p  180 (183)
                      +++||+||.+|.+|..+++.|. +||++|++|+|||.+|.+.+.|
T Consensus        91 ~~~iI~yC~sG~~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~p  135 (144)
T d1rhsa2          91 TKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPP  135 (144)
T ss_dssp             TSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCG
T ss_pred             CCCEEEEecccchHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCCC
Confidence            8999999999999999999999 9999999999999999886644

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=6.5e-24  Score=153.22  Aligned_cols=99  Identities=27%  Similarity=0.513  Sum_probs=86.6

Q ss_pred             hCCCEEEEcCChhhHh----------------ccCCCCceecCccccc-CCCCCCCHHHHHHHHhc--CCCCCeEEEEcC
Q 030104           85 QAGHRYLDVRTPEEFS----------------AGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEIIVGCQ  145 (183)
Q Consensus        85 ~~~~~lIDvR~~~e~~----------------~ghIpgAvnip~~~~~-~~~~~~~~~~~~~~~~~--l~~~~~ivv~c~  145 (183)
                      +++.+|||+|++.||.                .||||||+|+|+.+++ .++...+.+.+++.+..  ++++++||+||+
T Consensus        18 ~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~~~~~~~~~~~~~~~~~gi~~d~~vV~yC~   97 (141)
T d1uara2          18 EGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCR   97 (141)
T ss_dssp             TTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGTCCTTSEEEEECS
T ss_pred             CCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccccccccHHHHHHHHHHhCCCCCCeEEEEec
Confidence            4568999999999996                7999999999998765 34567788888888776  688999999999


Q ss_pred             CchHHHHHHHHHH--cCCCCeeEccccHHHhhh-CCCCCCC
Q 030104          146 SGKRSMMAATDLL--NGFAGITDIAGGFAAWRQ-NGLPTEP  183 (183)
Q Consensus       146 ~g~~s~~a~~~L~--~G~~~v~~l~GG~~~W~~-~g~pv~~  183 (183)
                      +|.+|..+++.|.  +||++|++|+|||.+|.+ .+.||++
T Consensus        98 ~G~~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~~Pv~~  138 (141)
T d1uara2          98 IAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAK  138 (141)
T ss_dssp             SHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBC
T ss_pred             CcchHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCccc
Confidence            9999999999997  799999999999999977 6999874

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.91  E-value=1.5e-24  Score=155.91  Aligned_cols=102  Identities=25%  Similarity=0.394  Sum_probs=86.9

Q ss_pred             CCCcccCHHHHHHHHhC--CCEEEEcCChhhHhccC---CCCceecCcccccCCCCCCCHHHHHHHH--hcCCCCCeEEE
Q 030104           70 GVPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGH---ATGAINVPYMYRVGSGMTKNLKFVEEVS--TRFRKHDEIIV  142 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~--~~~lIDvR~~~e~~~gh---IpgAvnip~~~~~~~~~~~~~~~~~~~~--~~l~~~~~ivv  142 (183)
                      .....|+++++.+++++  +++|||||++.||..+|   |+|++|+|..            .+...+  ..++++++|||
T Consensus        20 ~~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~------------~l~~~~~~~~~~~~~~ivv   87 (137)
T d1qxna_          20 ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRG------------KLEPLLAKSGLDPEKPVVV   87 (137)
T ss_dssp             HSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTT------------TSHHHHHHHCCCTTSCEEE
T ss_pred             ccCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccccCCcc------------cccccccccccCcccceee
Confidence            34568999999998854  39999999999999998   6678999984            222222  23688999999


Q ss_pred             EcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          143 GCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       143 ~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ||.+|.+|..++..|. .||+||++|+||+.+|.++|+|+.+
T Consensus        88 yC~~G~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~~  129 (137)
T d1qxna_          88 FCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD  129 (137)
T ss_dssp             ECCSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEEC
T ss_pred             eecccchHHHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCCC
Confidence            9999999999999999 9999999999999999999999753

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.7e-24  Score=156.25  Aligned_cols=110  Identities=19%  Similarity=0.198  Sum_probs=91.7

Q ss_pred             ccCHHHHHHHHhC-CCEEEEcC----------ChhhHhccCCCCceecCcccccC-----CCCCCCHHHHHHHHhc--CC
Q 030104           74 SVPVRVAHELLQA-GHRYLDVR----------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FR  135 (183)
Q Consensus        74 ~i~~~~~~~~~~~-~~~lIDvR----------~~~e~~~ghIpgAvnip~~~~~~-----~~~~~~~~~~~~~~~~--l~  135 (183)
                      .|+++.+++.+++ +++|||+|          ..++|..||||||+|+++.....     .++..+.+.+.+.+..  ++
T Consensus         4 lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~Gi~   83 (147)
T d1urha1           4 FVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGVN   83 (147)
T ss_dssp             EECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTCC
T ss_pred             cCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccccccccCCCHHHHHHHHHHhCcC
Confidence            5788999888765 49999999          34689999999999999865432     1345577777777766  68


Q ss_pred             CCCeEEEEcCC-chHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          136 KHDEIIVGCQS-GKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       136 ~~~~ivv~c~~-g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ++++||+||.+ +..+.++++.|+ +||++|++|+||+.+|.++|+|+++
T Consensus        84 ~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~pv~~  133 (147)
T d1urha1          84 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEE  133 (147)
T ss_dssp             TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBB
T ss_pred             CCCeEEEEeCCCcccchhHHHHHHhhcccceEEeCChHHHHHHcCCCccC
Confidence            88999999985 457889999999 9999999999999999999999873

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=9.8e-25  Score=157.97  Aligned_cols=111  Identities=17%  Similarity=0.214  Sum_probs=93.3

Q ss_pred             cccCHHHHHHHHhCC-CEEEEcCC-hhhHhccCCCCceecCcccccCC---CCCCCHHHHHHHHhc--CCCCCeEEEEcC
Q 030104           73 TSVPVRVAHELLQAG-HRYLDVRT-PEEFSAGHATGAINVPYMYRVGS---GMTKNLKFVEEVSTR--FRKHDEIIVGCQ  145 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~lIDvR~-~~e~~~ghIpgAvnip~~~~~~~---~~~~~~~~~~~~~~~--l~~~~~ivv~c~  145 (183)
                      ..||++++++.++++ ++|||||. ..+|..||||||+|+++......   ++..+.+.++..+..  ++++++||+||+
T Consensus         7 ~lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~~~~~~l~~~~~l~~~~~~~Gi~~~~~iVvy~~   86 (143)
T d1uara1           7 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLYGD   86 (143)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECH
T ss_pred             ccCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCcccccccccccccccccchhhHHHHHHhhhhccCCCceEEEecC
Confidence            468999998887654 89999995 78899999999999998644322   345577778888777  588899999998


Q ss_pred             Cch-HHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          146 SGK-RSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       146 ~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +|. .+.++++.|+ +||++|++|+||+.+|.++|+|+++
T Consensus        87 ~~~~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p~~~  126 (143)
T d1uara1          87 KNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTT  126 (143)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBC
T ss_pred             CCcccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCCccC
Confidence            776 6778999999 9999999999999999999999874

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=8.8e-24  Score=153.87  Aligned_cols=113  Identities=18%  Similarity=0.176  Sum_probs=93.0

Q ss_pred             CCcccCHHHHHHHHhC-----CCEEEEcC--------ChhhHhccCCCCceecCcccccC-----CCCCCCHHHHHHHHh
Q 030104           71 VPTSVPVRVAHELLQA-----GHRYLDVR--------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVST  132 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~-----~~~lIDvR--------~~~e~~~ghIpgAvnip~~~~~~-----~~~~~~~~~~~~~~~  132 (183)
                      ....|+++++++.++.     +++|||||        ..++|..||||||+|+++++...     .......+.+.+.+.
T Consensus         6 ~~~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   85 (149)
T d1rhsa1           6 YRALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVG   85 (149)
T ss_dssp             CCSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhcccccchhhhhhhhHHHHHHHh
Confidence            3467899999998863     48999999        46789999999999999875432     234456666777666


Q ss_pred             c--CCCCCeEEEEcCC---chHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          133 R--FRKHDEIIVGCQS---GKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       133 ~--l~~~~~ivv~c~~---g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .  ++++++|||||.+   +..+.+++|.|+ +||++|++|+||+.+|.++|+|+++
T Consensus        86 ~~Gi~~~~~vVvy~~~~~~~~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~pv~~  142 (149)
T d1rhsa1          86 SLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTS  142 (149)
T ss_dssp             HTTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             hhhccCCceeEEeeccCCcchhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCcccC
Confidence            5  6788999999974   457889999999 9999999999999999999999974

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.90  E-value=1.3e-23  Score=149.57  Aligned_cols=113  Identities=19%  Similarity=0.172  Sum_probs=88.5

Q ss_pred             CCcccCHHHHHHHHhC-CCEEEEcCChhhHhccCCCCceecCcccccCC-----CCCCCHHHHHHHHh--cCCCCCeEEE
Q 030104           71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVST--RFRKHDEIIV  142 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~-----~~~~~~~~~~~~~~--~l~~~~~ivv  142 (183)
                      .+..|+++++++++++ +++|||||++.||..||||||+|+|+......     ..............  ....+..+|+
T Consensus         7 ~p~lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (135)
T d1e0ca1           7 LPLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVV   86 (135)
T ss_dssp             SCSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEE
T ss_pred             CCcEeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccccccchhhhhhcccccchhhcchhhhhhhhccccccccccccc
Confidence            3467899999998865 48999999999999999999999998755422     22233444443332  2455667777


Q ss_pred             EcC-CchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          143 GCQ-SGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       143 ~c~-~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ||. ++.++.++++.|+ +||+||++|+||+.+|.++|+|+++
T Consensus        87 ~~~~~~~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p~~~  129 (135)
T d1e0ca1          87 YDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSR  129 (135)
T ss_dssp             ECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             cccccCccchhhHHHHHhccCCCEEEecChHHHHHHCCCCCCC
Confidence            765 5668889999999 9999999999999999999999874

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=1.2e-23  Score=149.72  Aligned_cols=96  Identities=22%  Similarity=0.210  Sum_probs=82.2

Q ss_pred             CCcccCHHHHHHHHhCC---CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHh--cCCCCCeEEEEcC
Q 030104           71 VPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVGCQ  145 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~--~l~~~~~ivv~c~  145 (183)
                      ....|++++++++++++   ++|||||++.||..||||||+|+|+.            .+.....  ..+++++||+||.
T Consensus        21 ~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai~~p~~------------~~~~~~~~~~~~~~~~ivl~C~   88 (130)
T d1yt8a4          21 GVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGG------------QLVQETDHVASVRGARLVLVDD   88 (130)
T ss_dssp             TCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHH------------HHHHSHHHHCCSBTCEEEEECS
T ss_pred             CCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCccccccc------------ccccccccccCCccceEEeecC
Confidence            45789999999998654   68999999999999999999999983            3333332  3478899999999


Q ss_pred             CchHHHHHHHHHH-cCCCCeeEccccHHHhhhCCC
Q 030104          146 SGKRSMMAATDLL-NGFAGITDIAGGFAAWRQNGL  179 (183)
Q Consensus       146 ~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~  179 (183)
                      +|.||..++..|+ +|| ++++|+||+.+|..++.
T Consensus        89 ~G~rS~~aa~~L~~~G~-~v~~l~GG~~aw~~~~g  122 (130)
T d1yt8a4          89 DGVRANMSASWLAQMGW-QVAVLDGLSEADFSERG  122 (130)
T ss_dssp             SSSHHHHHHHHHHHTTC-EEEEECSCCGGGCCBCS
T ss_pred             CCccHHHHHHHHHHcCC-CeEEEcCchHHHHHhcC
Confidence            9999999999999 999 79999999999987743

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=4.7e-23  Score=144.30  Aligned_cols=101  Identities=24%  Similarity=0.363  Sum_probs=86.3

Q ss_pred             ccCHHHHHHHHh-CCCEEEEcCChhhHh-----------ccCCCCceecCcccccCCCCCCCHHHHHHHHhc--CCCCCe
Q 030104           74 SVPVRVAHELLQ-AGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDE  139 (183)
Q Consensus        74 ~i~~~~~~~~~~-~~~~lIDvR~~~e~~-----------~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~--l~~~~~  139 (183)
                      .++.+++....+ .+.+|||+|++++|.           .||||||+|+|+......+...+.+.++..+..  ++++++
T Consensus         5 ~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   84 (120)
T d1urha2           5 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKP   84 (120)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSC
T ss_pred             HccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccccccCCHHHhhhhhhhcccCccCc
Confidence            456777766554 459999999999996           799999999999876667777778888877765  678899


Q ss_pred             EEEEcCCchHHHHHHHHHH-cCCCCeeEccccHHHh
Q 030104          140 IIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFAAW  174 (183)
Q Consensus       140 ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W  174 (183)
                      ||+||++|.+|..+++.|+ +||++|++|+|||.+|
T Consensus        85 ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          85 IIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             EEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             eEEEccchhHHHHHHHHHHHcCCCCceEcCCChhhC
Confidence            9999999999999999999 9999999999999988

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=4.3e-23  Score=147.11  Aligned_cols=105  Identities=17%  Similarity=0.242  Sum_probs=83.3

Q ss_pred             CCCcccCHHHHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhcCCCCCeEEEEcCCch
Q 030104           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivv~c~~g~  148 (183)
                      ...+.|+++++.++++++ ++|||||++.||..||||||+|+|+..+.        +.+.+....+++++.||+||..|.
T Consensus         5 ~~v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgAinip~~~~~--------~~~~~~~~~~~~~~~iv~~c~~~~   76 (132)
T d1t3ka_           5 RSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFD--------DKISHLVQNVKDKDTLVFHSALSQ   76 (132)
T ss_dssp             SSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSS--------TTHHHHHHTCCSCCEEEESSSCCS
T ss_pred             cCCCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcccceeeeeccc--------ccccccccccccccceEEEecccc
Confidence            345778888888887665 88999999999999999999999985321        345566666778889999998554


Q ss_pred             -HHHHHHHH--------HH-cCCCCeeEccccHHHhhhCCCCCC
Q 030104          149 -RSMMAATD--------LL-NGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       149 -~s~~a~~~--------L~-~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                       ++..++..        +. .||+||++|+||+.+|.++|+|+.
T Consensus        77 ~~~~~aa~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~  120 (132)
T d1t3ka_          77 VRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVC  120 (132)
T ss_dssp             SSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSC
T ss_pred             ccchHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcc
Confidence             55444433        34 699999999999999999999986

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.86  E-value=4.1e-22  Score=145.68  Aligned_cols=110  Identities=16%  Similarity=0.094  Sum_probs=89.6

Q ss_pred             CcccCHHHHHHHHhCCCEEEEcC--------ChhhHhccCCCCceecCcccccCC--------CCCCCHHHHHHHHhc--
Q 030104           72 PTSVPVRVAHELLQAGHRYLDVR--------TPEEFSAGHATGAINVPYMYRVGS--------GMTKNLKFVEEVSTR--  133 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~~~lIDvR--------~~~e~~~ghIpgAvnip~~~~~~~--------~~~~~~~~~~~~~~~--  133 (183)
                      ...|+++++.+.++ +++|||||        ...+|..||||||++++++..+..        .++.+.+.+++.+..  
T Consensus         7 ~~lvs~~~L~~~l~-d~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~~~~~~~lP~~~~~~~~l~~lG   85 (156)
T d1okga1           7 KVFLDPSEVADHLA-EYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCMANG   85 (156)
T ss_dssp             CCEECHHHHTTCGG-GSEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTT
T ss_pred             CcEeCHHHHHHhcC-CCEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCCCCCccccCCHHHHHHHHHhcc
Confidence            34789999988775 48999999        468899999999999998654421        235566777777765  


Q ss_pred             CCCCCeEEEEcCC-c-hHHHHHHHHHH-cCCCCeeEccccHHHhhhCCCCCCC
Q 030104          134 FRKHDEIIVGCQS-G-KRSMMAATDLL-NGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       134 l~~~~~ivv~c~~-g-~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      |+++++||+||+. | ..+.+++|.|+ +|+ +|++|+||+.+|.++|+|+++
T Consensus        86 I~~~~~VVvYd~~~g~~~A~R~~w~L~~~G~-~v~iLdGG~~aW~~~G~pv~t  137 (156)
T d1okga1          86 MAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMES  137 (156)
T ss_dssp             CSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEEC
T ss_pred             ccCCceEEEEeCCCCchHHHHHHHHHHHcCC-eeEEeCCCHHHHHHCCCCCCC
Confidence            6889999999864 3 46889999999 997 799999999999999999863

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.85  E-value=1.7e-22  Score=145.35  Aligned_cols=98  Identities=16%  Similarity=0.257  Sum_probs=79.7

Q ss_pred             hCCCEEEEcCChhhHh-----------ccCCCCceecCcccccC----CCCCCCHHHHHHHHhc-------CCCCCeEEE
Q 030104           85 QAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVG----SGMTKNLKFVEEVSTR-------FRKHDEIIV  142 (183)
Q Consensus        85 ~~~~~lIDvR~~~e~~-----------~ghIpgAvnip~~~~~~----~~~~~~~~~~~~~~~~-------l~~~~~ivv  142 (183)
                      ..+++|||+|++++|.           .||||||+|+|+...+.    .....+.+.+...+..       ++++++||+
T Consensus        10 ~p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~   89 (139)
T d1okga2          10 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVF   89 (139)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEE
T ss_pred             CCCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCeEEE
Confidence            4568999999999997           79999999999875542    2234566666665543       356689999


Q ss_pred             EcCCchHHHHHHHHHH-cCCCCeeEccccHHHhhh-CCCCCC
Q 030104          143 GCQSGKRSMMAATDLL-NGFAGITDIAGGFAAWRQ-NGLPTE  182 (183)
Q Consensus       143 ~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~~W~~-~g~pv~  182 (183)
                      ||.+|.+|+.+++.|. +||++|++|+|||.+|.+ .+.||+
T Consensus        90 yC~sG~~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~~~~Pv~  131 (139)
T d1okga2          90 SCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIM  131 (139)
T ss_dssp             ECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHH
T ss_pred             ECCCcHHHHHHHHHHHHhCCCCccCCCCCHHHHhCCCCCCee
Confidence            9999999999999999 999999999999999966 567764

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.1e-20  Score=136.53  Aligned_cols=98  Identities=18%  Similarity=0.303  Sum_probs=78.0

Q ss_pred             CCCCcccCHHHHHHHHhC-------CCEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc------CC
Q 030104           69 VGVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR------FR  135 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~------l~  135 (183)
                      ......|+++++.+++++       +++|||||++.||..|||+||+|+|..           +.+...+..      ..
T Consensus        19 ~~~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~-----------~~~~~~l~~~~~~~~~~   87 (161)
T d1c25a_          19 HQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHME-----------EEVEDFLLKKPIVPTDG   87 (161)
T ss_dssp             CTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHTTTSCCCCCTT
T ss_pred             CCCCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcH-----------HHHHHHHhhhhhhhhhc
Confidence            345678999999999874       389999999999999999999999974           333333222      12


Q ss_pred             CCCeEEEEcC-CchHHHHHHHHHH-c----------CCCCeeEccccHHHhhhC
Q 030104          136 KHDEIIVGCQ-SGKRSMMAATDLL-N----------GFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       136 ~~~~ivv~c~-~g~~s~~a~~~L~-~----------G~~~v~~l~GG~~~W~~~  177 (183)
                      +...||+||. ++.|+..++..|+ .          ||++|++|+||+.+|.++
T Consensus        88 ~~~~vV~yc~~s~~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~  141 (161)
T d1c25a_          88 KRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK  141 (161)
T ss_dssp             SEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHH
T ss_pred             cCCeEEEEeccccccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHH
Confidence            3345888997 7889999988886 5          999999999999999764

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.2e-19  Score=130.62  Aligned_cols=97  Identities=20%  Similarity=0.299  Sum_probs=76.3

Q ss_pred             CCCcccCHHHHHHHHhCC-------CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc-------CC
Q 030104           70 GVPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-------FR  135 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~-------l~  135 (183)
                      .....|+++++.+++++.       ++|||||++.||..|||+||+|+|..           .........       .+
T Consensus        20 ~~~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~-----------~~~~~~~~~~~~~~~~~~   88 (174)
T d1ymka1          20 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLD   88 (174)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHTTTCCC----
T ss_pred             CCCcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCch-----------HHHHHHHHHhhhhhhhhc
Confidence            445679999999999752       89999999999999999999999984           333322211       23


Q ss_pred             CCCeEEEEcC-CchHHHHHHHHHH-c----------CCCCeeEccccHHHhhhC
Q 030104          136 KHDEIIVGCQ-SGKRSMMAATDLL-N----------GFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       136 ~~~~ivv~c~-~g~~s~~a~~~L~-~----------G~~~v~~l~GG~~~W~~~  177 (183)
                      +.+.||+||. ++.++..++..|+ .          ||++|++|+||+.+|.+.
T Consensus        89 ~~~~vV~yc~~s~~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~  142 (174)
T d1ymka1          89 KRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ  142 (174)
T ss_dssp             CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHh
Confidence            4456999998 5668888888876 4          999999999999999764

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.9e-18  Score=121.00  Aligned_cols=104  Identities=8%  Similarity=0.038  Sum_probs=72.5

Q ss_pred             ccCHHHHHHHHhCC---CEEEEcCChhhHhccCCCCceecCcccccCCCCC-----CCHHHHHHHHhcCCCCCeEEEEcC
Q 030104           74 SVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT-----KNLKFVEEVSTRFRKHDEIIVGCQ  145 (183)
Q Consensus        74 ~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~ivv~c~  145 (183)
                      .|+++++.++++++   ++|||||+..||..||||||+|||...+......     ................+.||+||.
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~iV~yd~   81 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDW   81 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEEECS
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhhhhhHHHHHHHhccCCCCeEEEEeC
Confidence            58999999998753   8999999999999999999999998644321110     001222233344456788999998


Q ss_pred             CchH-H---H----HHHHHHH------cCCCCeeEccccHHHhhhC
Q 030104          146 SGKR-S---M----MAATDLL------NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       146 ~g~~-s---~----~a~~~L~------~G~~~v~~l~GG~~~W~~~  177 (183)
                      .+.. +   .    ...+.|.      .|..+|++|+||+.+|.+.
T Consensus        82 ~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~  127 (135)
T d2gwfa1          82 FSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  127 (135)
T ss_dssp             SCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHh
Confidence            6542 1   1    2233332      3667899999999999886

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.3e-17  Score=117.70  Aligned_cols=104  Identities=20%  Similarity=0.172  Sum_probs=71.6

Q ss_pred             CcccCHHHHHHHHh---CCCEEEEcCChhhHhccCCCCceecCcccccC----------CCCCCCHHHHHHHHhcCCCCC
Q 030104           72 PTSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVG----------SGMTKNLKFVEEVSTRFRKHD  138 (183)
Q Consensus        72 ~~~i~~~~~~~~~~---~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~----------~~~~~~~~~~~~~~~~l~~~~  138 (183)
                      ...+|++++++.++   .+++|||||++.||..||||||+|+++...+.          ....... .....+.....++
T Consensus        15 ~~~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   93 (154)
T d1hzma_          15 AISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRG-EDRDRFTRRCGTD   93 (154)
T ss_dssp             SSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTS-HHHHHHHHSTTSS
T ss_pred             cCccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhhccCCcccccccCCcH-HHHHHHhhcCCCC
Confidence            34577888888774   34899999999999999999999999754321          1112222 2233334456678


Q ss_pred             eEEEEcCCch----------HHHHHHHHHH-cCCCCeeEccccHHHhhhC
Q 030104          139 EIIVGCQSGK----------RSMMAATDLL-NGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       139 ~ivv~c~~g~----------~s~~a~~~L~-~G~~~v~~l~GG~~~W~~~  177 (183)
                      .||+||+.+.          +...+...|. .|+ +|++|+||+.+|.+.
T Consensus        94 ~VVvYd~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~v~iL~GG~~~w~~~  142 (154)
T d1hzma_          94 TVVLYDESSSDWNENTGGESLLGLLLKKLKDEGC-RAFYLEGGFSKFQAE  142 (154)
T ss_dssp             CEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTC-CCEECCCCHHHHHHH
T ss_pred             eEEEEcCCCchhhhhHHHHHHHHHHHHHHHhcCC-eEEEEeCcHHHHHHH
Confidence            8999998654          2223333444 454 899999999999875

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.04  E-value=0.022  Score=38.98  Aligned_cols=88  Identities=9%  Similarity=0.004  Sum_probs=51.0

Q ss_pred             CHHHHHHHHhCC-CEEEEcCChhhHhc------cCCCCceecCcccccCCCCCCCHHHHHHHHhcC--CCCCeEEEEcCC
Q 030104           76 PVRVAHELLQAG-HRYLDVRTPEEFSA------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQS  146 (183)
Q Consensus        76 ~~~~~~~~~~~~-~~lIDvR~~~e~~~------ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~l--~~~~~ivv~c~~  146 (183)
                      +++++..+.+-+ -.|||.|+..|...      .+=-.-+|+|..+..........+.+......+  ..+.+|+|.|..
T Consensus        22 t~~~~~~L~~lgIktIidLr~~~e~~~~~~~~~~~gi~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlvHC~~  101 (151)
T d1xria_          22 DSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKR  101 (151)
T ss_dssp             CHHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTCEEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSS
T ss_pred             CHHHHHHHHHCCCCEEEECCCcchhhcccchhhhcCceEeecCccccccccccccHHHHHHHHHHHhcCCCCCEEEEcCC
Confidence            556666665556 78999998655321      110123566664332222333445555555443  345789999999


Q ss_pred             ch-HHHHHHHHHH--cCCCC
Q 030104          147 GK-RSMMAATDLL--NGFAG  163 (183)
Q Consensus       147 g~-~s~~a~~~L~--~G~~~  163 (183)
                      |. |+..++..+.  .|+..
T Consensus       102 GkdRTG~v~a~~l~~~g~~~  121 (151)
T d1xria_         102 GKHRTGCLVGCLRKLQKWCL  121 (151)
T ss_dssp             SSSHHHHHHHHHHHHTTBCH
T ss_pred             CchHHHHHHHHHHHHcCCCH
Confidence            85 7665554444  88863

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Kinase associated phosphatase (kap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.54  E-value=0.18  Score=35.13  Aligned_cols=72  Identities=18%  Similarity=0.176  Sum_probs=43.0

Q ss_pred             HHHHHHHHhCC-CEEEEcCChhhHhccCCCC-----------ceecCcccccCCCCCCCHHHHHHHH----hcCCCCCeE
Q 030104           77 VRVAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVS----TRFRKHDEI  140 (183)
Q Consensus        77 ~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpg-----------Avnip~~~~~~~~~~~~~~~~~~~~----~~l~~~~~i  140 (183)
                      .+++..+.+.+ ..||..-+..|+....++.           -+++|+.+.    ...+.+.+....    +.+..+.+|
T Consensus        37 ~~dl~~L~~~gi~~Vv~L~~~~E~~~~~~~~~~~~~~~~gi~~~~~p~~D~----~~p~~~~~~~~~~~i~~~l~~~~~V  112 (176)
T d1fpza_          37 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADG----GTPDIASCCEIMEELTTCLKNYRKT  112 (176)
T ss_dssp             HHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCTT----CCCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHhCCCCEEEEeCChhhhhhcCCCcHHHHHHHcCCEEEeCCccCC----CchhhHHHHHHHHHHHHHHHcCCeE
Confidence            44566666666 6788888887776554443           245555322    222333333333    335677899


Q ss_pred             EEEcCCch-HHHH
Q 030104          141 IVGCQSGK-RSMM  152 (183)
Q Consensus       141 vv~c~~g~-~s~~  152 (183)
                      +|.|..|. |+..
T Consensus       113 ~VHC~~G~gRtg~  125 (176)
T d1fpza_         113 LIHSYGGLGRSCL  125 (176)
T ss_dssp             EEECSSSSSHHHH
T ss_pred             EEEecCCCCchHH
Confidence            99999886 6663

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pac-1 [TaxId: 9606]

Probab=91.42  E-value=0.26  Score=33.01  Aligned_cols=83  Identities=13%  Similarity=-0.014  Sum_probs=42.3

Q ss_pred             HHHHHHhCC-CEEEEcCChhhHhccCCCCceecCcccccCCCCCCCHHHHHHHH-hcCCCCCeEEEEcCCch-HHH--HH
Q 030104           79 VAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-TRFRKHDEIIVGCQSGK-RSM--MA  153 (183)
Q Consensus        79 ~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ivv~c~~g~-~s~--~a  153 (183)
                      +...+.+.+ -.||++.+......-+...-.++|+.+.-...+...-+.....+ ..+..+.+|+|+|..|. ||.  .+
T Consensus        21 ~~~~L~~~gI~~Iin~~~~~~~~~~~~~~y~~i~i~D~~~~~i~~~~~~~~~~i~~~~~~~~~VlVHC~~G~sRS~~v~~  100 (145)
T d1m3ga_          21 DLQGLQACGITAVLNVSASCPNHFEGLFRYKSIPVEDNQMVEISAWFQEAIGFIDWVKNSGGRVLVHSQAGISRSATICL  100 (145)
T ss_dssp             HHHHHHHHTCSEEEECSSSSSEEECSSSEEEECCCCCSTTCCCTTSHHHHHHHHHHHHHTTCCEEECCSSSSSHHHHHHH
T ss_pred             CHHHHHHcCCcEEEEecCCCCcCCCCceEEEEEeccCCchhhHHHHHHHHHHHHHHhhccCceEEEEcccccccHHHHHH
Confidence            333344446 56888876432222222233567765433222222222222222 22446789999999987 776  33


Q ss_pred             HHHHH-cCC
Q 030104          154 ATDLL-NGF  161 (183)
Q Consensus       154 ~~~L~-~G~  161 (183)
                      +..+. .|+
T Consensus       101 aYLm~~~~~  109 (145)
T d1m3ga_         101 AYLMQSRRV  109 (145)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHhCC
Confidence            43444 666

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=90.57  E-value=0.16  Score=35.64  Aligned_cols=47  Identities=11%  Similarity=0.164  Sum_probs=37.9

Q ss_pred             HHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104          125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA  172 (183)
Q Consensus       125 ~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~  172 (183)
                      +.+.+....+.++.+++|||.+-..+..++..|. .|+ ++..+.|++.
T Consensus        19 dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi-~a~~~Hg~~~   66 (174)
T d1c4oa2          19 DLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGI-RARYLHHELD   66 (174)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTCC
T ss_pred             HHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCC-ceEEEecccc
Confidence            3455554445578899999999999999999999 999 6888999853

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.47  E-value=0.9  Score=33.57  Aligned_cols=31  Identities=16%  Similarity=0.157  Sum_probs=22.5

Q ss_pred             CCCcccCHHHHHHHHhCC-CEEEEcCChhhHh
Q 030104           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFS  100 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~  100 (183)
                      .....++.++...+.+-+ -.|||.|++.|..
T Consensus        28 ~~l~~lt~~d~~~L~~lgI~tViDLRs~~E~~   59 (272)
T d1ywfa1          28 SELSRLDDAGRATLRRLGITDVADLRSSREVA   59 (272)
T ss_dssp             SCCTTCCHHHHHHHHHHTCCEEEECCCHHHHH
T ss_pred             CCcCcCCHHHHHHHHHCCCcEEEECCCHHHHh
Confidence            344566777777665445 7899999999974

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=85.27  E-value=0.55  Score=32.83  Aligned_cols=47  Identities=13%  Similarity=0.226  Sum_probs=37.2

Q ss_pred             HHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104          125 KFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA  172 (183)
Q Consensus       125 ~~~~~~~~~l~~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~  172 (183)
                      +.+.+....+.++.++++||++-..+..++..|. .|+ .+..+.|++.
T Consensus        19 ~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~-~~~~~hg~~~   66 (181)
T d1t5la2          19 DLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGI-KVAYLHSEIK   66 (181)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTC-CEEEECSSCC
T ss_pred             HHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCc-ceeEecCCcc
Confidence            3455555545567899999999999999999999 999 6888888753

>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Bacillus subtilis [TaxId: 1423]

Probab=83.36  E-value=0.41  Score=31.49  Aligned_cols=37  Identities=22%  Similarity=0.071  Sum_probs=29.1

Q ss_pred             CCeEEEEcCCch-HHHHHHHHHH-cCCCCeeEccccHHH
Q 030104          137 HDEIIVGCQSGK-RSMMAATDLL-NGFAGITDIAGGFAA  173 (183)
Q Consensus       137 ~~~ivv~c~~g~-~s~~a~~~L~-~G~~~v~~l~GG~~~  173 (183)
                      +++|+|+|.+.. ||..|..+++ .+-+++.+..+|+..
T Consensus         1 ~K~ILFVC~gN~cRSpmAEai~~~~~~~~~~~~Sag~~~   39 (137)
T d1jl3a_           1 NKIIYFLCTGNSCRSQMAEGWAKQYLGDEWKVYSAGIEA   39 (137)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHSCTTEEEEEEESSC
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhCCCCeeeccccccc
Confidence            468999998655 9998888888 766778788888654

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=82.65  E-value=0.59  Score=31.11  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             CCCeEEEEcCCchHHHHHHHHHH-cCCCCeeEccccHH
Q 030104          136 KHDEIIVGCQSGKRSMMAATDLL-NGFAGITDIAGGFA  172 (183)
Q Consensus       136 ~~~~ivv~c~~g~~s~~a~~~L~-~G~~~v~~l~GG~~  172 (183)
                      ++.+.||||++-..+..++..|. .|+ ++..+.||+.
T Consensus        34 ~~~k~IVFc~t~~~ae~la~~L~~~G~-~~~~~H~~~~   70 (138)
T d1jr6a_          34 KGGRHLIFCHSKKKCDELAAKLVALGI-NAVAYYRGLD   70 (138)
T ss_dssp             TTSCEEEECSCHHHHHHHHHHHHHHTC-EEEEECTTCC
T ss_pred             CCCCEEEEeCcHHHHHHHHHHHhcccc-chhhhhccch
Confidence            45679999999999999999999 999 5777777643

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.62  E-value=5.1  Score=27.46  Aligned_cols=80  Identities=13%  Similarity=0.106  Sum_probs=43.9

Q ss_pred             HHHHHHHhCC-CEEEEcCCh----hhHhccCCCCceecCcccccCCCCCCCHHHHHHHHhc-CCCCCeEEEEcCCch-HH
Q 030104           78 RVAHELLQAG-HRYLDVRTP----EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FRKHDEIIVGCQSGK-RS  150 (183)
Q Consensus        78 ~~~~~~~~~~-~~lIDvR~~----~e~~~ghIpgAvnip~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ivv~c~~g~-~s  150 (183)
                      +.+..+.+.+ ..||++++.    ..+..-.| --+++|+.+    ......+.+...+.. ...+.+|+|.|..|. |+
T Consensus        49 ~~l~~l~~~gi~~Ii~l~~~~~~~~~~~~~gi-~~~~~p~~D----~~~P~~~~i~~~i~~~~~~~~~V~VHC~~G~gRs  123 (182)
T d1ohea2          49 TYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGF-DHHDLFFAD----GSTPTDAIVKEFLDICENAEGAIAVHSKAGLGRT  123 (182)
T ss_dssp             HHHHHHHHTTEEEEEECSCCSSCTHHHHTTTC-EEEECCCCT----TCCCCHHHHHHHHHHHHSCSSEEEEECSSSSHHH
T ss_pred             HHHHHHHhcCCCEEEEecCCCcCccccccCCc-EEEecCCCC----CCCcCHHHHHHHHHHHHcCCCcEEEEeCCCCcch
Confidence            3455555666 568999753    22332222 124555532    222334445444443 356789999999987 76


Q ss_pred             H-H-HHHHHH-cCCC
Q 030104          151 M-M-AATDLL-NGFA  162 (183)
Q Consensus       151 ~-~-a~~~L~-~G~~  162 (183)
                      . . ++..+. .|++
T Consensus       124 gt~~a~yL~~~~~~~  138 (182)
T d1ohea2         124 GTLIACYIMKHYRMT  138 (182)
T ss_dssp             HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHcCCC
Confidence            5 3 344444 6764