Citrus Sinensis ID: 030115

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKNKRHAG
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSwlakqplpvEAAIVTATTAINGAAIGAFLGVMtqdltsslptpppqsslnpdavapfqqvqavaggplvqARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLvsgmgganpavnAFTSGLLFAIFQGcsfknkrhag
Flexible Loop (DISEMBL)
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKNKRHAG
Low Complexity Region (SEG)
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEaaivtattaingaaigaFLGVMtqdltsslptpppqsslNPDavapfqqvqavaGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQssvvaafgsgaafslvsgMGGANPAVNAFTSGLLFAIFQGCSFKNKRHAG
Disordered region (IsUnstruct)
************QLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQ**********************FQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSF*******
Disordered Region (DISOPRED)
********************************YKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDL*********************************QARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKNKR***
Disordered Region (DISEMBL)
********MSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLT************NPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKNKRHAG
Disordered Region (DISPRO)
******KVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKNK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKNKRHAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
224118566	262	predicted protein [Populus trichocarpa]	0.885	0.618	0.716	5e-61
449456433	253	PREDICTED: uncharacterized protein LOC10	0.945	0.683	0.670	1e-58
449497426	253	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.945	0.683	0.670	1e-58
255557172	261	protein translocase, putative [Ricinus c	0.885	0.620	0.691	5e-58
356509122	260	PREDICTED: uncharacterized protein LOC10	0.967	0.680	0.627	6e-58
224134921	260	predicted protein [Populus trichocarpa]	0.956	0.673	0.655	6e-58
356516192	260	PREDICTED: uncharacterized protein LOC10	0.967	0.680	0.615	2e-57
225455153	254	PREDICTED: uncharacterized protein LOC10	0.945	0.681	0.661	4e-54
357464317	263	SAM domain family protein [Medicago trun	0.967	0.673	0.616	4e-52
226494803	270	SAM domain family protein [Zea mays] gi|	0.830	0.562	0.585	6e-46

>gi|224118566|ref|XP_002317852.1| predicted protein [Populus trichocarpa] gi|222858525|gb|EEE96072.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (609), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 116/162 (71%), Positives = 137/162 (84%)

Query: 16  QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSL 75
           Q  IK VQFK KELE+G+KSWL+KQ LPVEAA+VTAT  + GAAIGA +G +T D++SS+
Sbjct: 19  QDPIKLVQFKFKELEDGFKSWLSKQSLPVEAAVVTATGGVQGAAIGAIMGTLTPDISSSM 78

Query: 76  PTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSS 135
           PTPPPQ+SLNP A+A  +Q QA+AGGPL+QARNFAV+TG NAGI+C+MKRLRGKED+QSS
Sbjct: 79  PTPPPQASLNPQAMASLKQAQALAGGPLIQARNFAVMTGTNAGIACIMKRLRGKEDVQSS 138

Query: 136 VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177
           +VAAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  FK
Sbjct: 139 MVAAFGSGAMFSLVSGMGGPNLATNAITSGLFFALVQGGLFK 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456433|ref|XP_004145954.1| PREDICTED: uncharacterized protein LOC101208652 [Cucumis sativus]

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 120/179 (67%), Positives = 145/179 (81%), Gaps = 6/179 (3%)

Query: 1   MEKGNEKVMSLVQLP--QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGA 58
           ME+G + V  +V+LP  Q  ++ +Q + KELENG+++WLAKQ LPVEAA+VT T+A  GA
Sbjct: 1   MEQGKQGV--VVKLPPHQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGA 58

Query: 59  AIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAG 118
           AIG F+G +T D++SSLPTP  Q+ LNP A+A F+Q QA+AGGPLVQARNFAV+TGVNAG
Sbjct: 59  AIGGFMGTLTNDVSSSLPTP--QAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAG 116

Query: 119 ISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177
           IS VMKRLRGKED+QSS+VAAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  FK
Sbjct: 117 ISSVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNAVTSGLFFALVQGGLFK 175

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497426|ref|XP_004160398.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101208652 [Cucumis sativus]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 120/179 (67%), Positives = 145/179 (81%), Gaps = 6/179 (3%)

Query: 1   MEKGNEKVMSLVQLP--QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGA 58
           ME+G + V  +V+LP  Q  ++ +Q + KELENG+++WLAKQ LPVEAA+VT T+A  GA
Sbjct: 1   MEQGKQGV--VVKLPPHQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGA 58

Query: 59  AIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAG 118
           AIG F+G +T D++SSLPTP  Q+ LNP A+A F+Q QA+AGGPLVQARNFAV+TGVNAG
Sbjct: 59  AIGGFMGTLTNDVSSSLPTP--QAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAG 116

Query: 119 ISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177
           IS VMKRLRGKED+QSS+VAAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  FK
Sbjct: 117 ISSVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNAVTSGLXFALVQGGLFK 175

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557172|ref|XP_002519617.1| protein translocase, putative [Ricinus communis] gi|223541207|gb|EEF42762.1| protein translocase, putative [Ricinus communis]

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 112/162 (69%), Positives = 136/162 (83%)

Query: 16  QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSL 75
           +  I+ +Q K+KELENG+KSWL+KQ L VEAA+VTAT+A  GAAIGA +G +  D++SSL
Sbjct: 17  ENPIQQLQAKMKELENGFKSWLSKQSLAVEAAVVTATSATQGAAIGAIMGTLAPDISSSL 76

Query: 76  PTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSS 135
           PTPPP ++LNP A+A  +Q QA++GGPLVQARNFAV+TGVNAGIS VMKRLRGKED+QSS
Sbjct: 77  PTPPPDAALNPQAMASIKQAQALSGGPLVQARNFAVMTGVNAGISSVMKRLRGKEDVQSS 136

Query: 136 VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177
           +VAAFGSGA FSLVSG+GG NPA NA TSGL FA+ QG  F+
Sbjct: 137 MVAAFGSGAMFSLVSGVGGPNPAANAITSGLFFALVQGGLFQ 178

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509122|ref|XP_003523301.1| PREDICTED: uncharacterized protein LOC100775460 [Glycine max]

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 111/177 (62%), Positives = 139/177 (78%)

Query: 1   MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI 60
           ME+  ++ + +    Q  I+ +Q + KELE G++ WL+KQ LPVEAA+VT T+A  GAAI
Sbjct: 1   MEQAGKQGIMVTSQSQNPIEQIQARFKELETGFRLWLSKQSLPVEAAVVTTTSAAQGAAI 60

Query: 61  GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120
           GAF+G +T D +S+ PTPPP +SLNP A+A  +Q QA+AGGPLVQARNFAV+TGVNAGIS
Sbjct: 61  GAFMGTLTADASSTFPTPPPNASLNPQAMASLKQAQALAGGPLVQARNFAVMTGVNAGIS 120

Query: 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177
           CV+KR+RGKED+QSS+ AAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  F+
Sbjct: 121 CVLKRIRGKEDVQSSMAAAFGSGAMFSLVSGMGGPNQATNAVTSGLFFALVQGGLFQ 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134921|ref|XP_002321938.1| predicted protein [Populus trichocarpa] gi|222868934|gb|EEF06065.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 116/177 (65%), Positives = 144/177 (81%), Gaps = 2/177 (1%)

Query: 2   EKGNEKVMSLVQLP-QKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI 60
           ++G + V+    LP Q  +K VQFK KELE+G+KSWL+KQ L VEAA+VTAT+ + GAAI
Sbjct: 3   QQGKQGVIVSKLLPNQDPVKFVQFKYKELEDGFKSWLSKQSLLVEAAVVTATSGVQGAAI 62

Query: 61  GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120
           GA +G +T D++SS+PTPP Q++LNP A+A  +Q QA+AGGPL+QARNFAV+TG NAGI+
Sbjct: 63  GAIMGTITPDISSSMPTPP-QAALNPQAMASLKQAQALAGGPLIQARNFAVMTGTNAGIA 121

Query: 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177
           C+MKRLRGKED+QSS+VAAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  FK
Sbjct: 122 CIMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNNATNAITSGLFFALVQGGLFK 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516192|ref|XP_003526780.1| PREDICTED: uncharacterized protein LOC100813121 [Glycine max]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/177 (61%), Positives = 139/177 (78%)

Query: 1   MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI 60
           ME+  ++ + +    Q  I+ +Q + K+LE G++ WL+KQ LPVEAA+VT T+A  GAAI
Sbjct: 1   MEQAGKQGIMVASQSQNPIEQIQARFKDLETGFRLWLSKQSLPVEAAVVTTTSAAQGAAI 60

Query: 61  GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120
           GAF+G +T D +S+ PTPPP +SLNP A+A  +Q QA+AGGPL+QARNFAV+TGVNAGIS
Sbjct: 61  GAFMGTLTADASSTFPTPPPNASLNPQAMASLKQAQALAGGPLIQARNFAVMTGVNAGIS 120

Query: 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177
           CV+KR+RGKED+QSS+ AAFGSGA FSLVSGMGG N A NA TSGL FA+ QG  F+
Sbjct: 121 CVLKRIRGKEDVQSSMAAAFGSGALFSLVSGMGGPNQATNALTSGLFFALVQGGLFQ 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455153|ref|XP_002267996.1| PREDICTED: uncharacterized protein LOC100267522 [Vitis vinifera]

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/177 (66%), Positives = 144/177 (81%), Gaps = 4/177 (2%)

Query: 1   MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAI 60
           M++G + VM   Q P   I  +Q + K+LENG+++WLAKQ LPVEAA+VTAT+A  GAAI
Sbjct: 1   MDEGKQGVMVAAQNP---IAQLQARFKDLENGFRAWLAKQSLPVEAAVVTATSAAQGAAI 57

Query: 61  GAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120
           GAF+G +T D TS++PTPP Q++L+P A+A F+Q QA+AGGPLVQARNFAV+TGVNAGIS
Sbjct: 58  GAFMGTLTNDATSAIPTPP-QANLSPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGIS 116

Query: 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177
           CVMKR+RGKED+QSS+VAAFGSGA FSLVSGMGG N A N  TSGL FA+ QG  F+
Sbjct: 117 CVMKRIRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNVITSGLFFALIQGGIFQ 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464317|ref|XP_003602440.1| SAM domain family protein [Medicago truncatula] gi|355491488|gb|AES72691.1| SAM domain family protein [Medicago truncatula]

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/180 (61%), Positives = 138/180 (76%), Gaps = 3/180 (1%)

Query: 1   MEKGNEKVMSLVQLPQK---AIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAING 57
           ME+G +  M L  LPQ+    I  +Q + K LENG+K WL+KQ + VEAA+VT T A  G
Sbjct: 1   MEQGKQGAMVLKGLPQQLQNPIDQIQTRYKHLENGFKLWLSKQSIAVEAAVVTTTGAAQG 60

Query: 58  AAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNA 117
           AAIGAFLG +T D +S+ PTPPP +SLNP A+A  QQ QA+AGGPL+QARNFA++TGV+A
Sbjct: 61  AAIGAFLGTLTGDASSAFPTPPPNASLNPQAMASLQQAQALAGGPLIQARNFAILTGVSA 120

Query: 118 GISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177
           GI+CV++RLRGKED++SS+ AAFGSG  FSLVSGMGG N   NA TSGL FA+FQG  F+
Sbjct: 121 GITCVLRRLRGKEDVKSSMAAAFGSGVTFSLVSGMGGPNKVGNAVTSGLFFALFQGGVFQ 180

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226494803|ref|NP_001146865.1| SAM domain family protein [Zea mays] gi|195604410|gb|ACG24035.1| SAM domain family protein [Zea mays] gi|413922575|gb|AFW62507.1| SAM domain protein [Zea mays]

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 117/152 (76%)

Query: 25  KLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSL 84
           ++K +E G+++W+AKQP+ +EAA+ TA  A+ G A+G  +G +T D  S  P P P S+ 
Sbjct: 39  RVKAIEAGFRAWMAKQPIHIEAAVSTAVGAVQGGALGGLMGSLTADGGSPFPIPQPPSNA 98

Query: 85  NPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGA 144
           N DA+A F+Q QA+A GPLVQARNFAV+TG NAGISCVM+RLRG+ED+Q S+ AAFGSGA
Sbjct: 99  NSDAMASFKQAQALAAGPLVQARNFAVMTGANAGISCVMRRLRGQEDIQGSMTAAFGSGA 158

Query: 145 AFSLVSGMGGANPAVNAFTSGLLFAIFQGCSF 176
            FS+VSGMG  NP +NA T+G+ FA+FQG  F
Sbjct: 159 LFSIVSGMGTPNPVLNAITTGVAFAVFQGGFF 190

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2153959	259	AT5G24650 [Arabidopsis thalian	0.879	0.621	0.382	2.3e-23
TAIR|locus:2114723	261	AT3G49560 "AT3G49560" [Arabido	0.868	0.609	0.339	5.1e-19

TAIR|locus:2153959 AT5G24650 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 65/170 (38%), Positives = 80/170 (47%)

Query:     8 VMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEXXXXXXXXXXXXXXXXXFLGVM 67
             VMSL++  Q  I+  Q K KE+E G+KSWL+KQ LPVE                  +G +
Sbjct:    16 VMSLMKDQQNPIQQFQVKFKEIETGFKSWLSKQKLPVEAAVVTAMGGVQGAFIGGLMGTL 75

Query:    68 XXXXXXXXXXXXXXXXXNPDXXXXXXXXXXXXGGPLVQARNFAVITGVNAGISCVMKRLR 127
                              +P             GGPLVQARNFA ITGVNAGI+CVMKR+R
Sbjct:    76 SPEMPQAGI--------DPQAMASLKQTQALVGGPLVQARNFAAITGVNAGIACVMKRIR 127

Query:   128 GKEDLQXXXXXXXXXXXXXXXXXXMGGANPAVNAFTSGLLFAIFQGCSFK 177
             GKEDL+                   G     +NA T+   FA+FQG  FK
Sbjct:   128 GKEDLESAVVAAFGSGVAYSLVSA-GLQGQPMNAITTAAGFAVFQGVFFK 176

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2114723 AT3G49560 "AT3G49560" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 57/168 (33%), Positives = 73/168 (43%)

Query:    10 SLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEXXXXXXXXXXXXXXXXXFLGVMXX 69
             SL    Q  I+  Q K KE+E  +K+WL+KQ +PVE                  +G +  
Sbjct:    23 SLFNDQQNPIQQFQVKFKEVETNFKTWLSKQSIPVEAAVVSTMSGVQGAFIGGLMGTLSP 82

Query:    70 XXXXXXXXXXXXXXXNPDXXXXXXXXXXXXGGPLVQARNFAVITGVNAGISCVMKRLRGK 129
                            +P             GGP VQARNFA ITGVNAGI+ VMKR+RGK
Sbjct:    83 EMPQAGV--------DPQAIASMKQAQALVGGPWVQARNFAAITGVNAGIASVMKRIRGK 134

Query:   130 EDLQXXXXXXXXXXXXXXXXXXMGGANPAVNAFTSGLLFAIFQGCSFK 177
             ED++                   G     +NA T+   FA+FQG  FK
Sbjct:   135 EDIESAVVAALGSGFAYSLVS-QGLQGQPMNAITTAAGFAVFQGVFFK 181


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      183       119   0.00091  102 3  11 22  0.50    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  117 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.25u 0.14s 9.39t   Elapsed:  00:00:00
  Total cpu time:  9.25u 0.14s 9.39t   Elapsed:  00:00:00
  Start:  Fri May 10 09:00:58 2013   End:  Fri May 10 09:00:58 2013

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	5e-13
TIGR00983	149	TIGR00983, 3a0801s02tim23, mitochondrial import in	2e-04
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	3e-04
TIGR00980	170	TIGR00980, 3a0801so1tim17, mitochondrial import in	3e-04

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score = 62.3 bits (152), Expect = 5e-13
 Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 43  PVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGP 102
           P      T    + GA  G F G     L ++L + P +  LN         + A     
Sbjct: 3   PERIVYDTGGGFLMGAVYGGFFGAP-HGLVNALRSGPLKLRLN-------GVLNATGRRG 54

Query: 103 LVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAF 162
                NFAV  G+ +GI C +++LRGKED  +S++A   +GA   L  G   A  AV A 
Sbjct: 55  PSHGNNFAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGLRGGPKAA--AVGAA 112

Query: 163 TSGLLFAIF 171
                 A  
Sbjct: 113 VGAAFSAAI 121

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane translocase subunit tim23

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 50  TATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNF 109
           T T  + G AIGA  G+    L  +   P  +  LN       ++      GP       
Sbjct: 38  TGTCYLTGLAIGALNGLR-LGLKETQSMPWTKLRLNQILNMVTRR------GPFW-GNTL 89

Query: 110 AVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGA 155
            ++  V  GI+ +++  RGK D  +SV A   +GA +    G+ G 
Sbjct: 90  GILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGM 135

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 149

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLL 167
           NFA+  G+ +   C ++ LRGKED  +++ + F +G   ++  G   A    NA   G+L
Sbjct: 65  NFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSA--VRNAIFGGIL 122

Query: 168 FAIFQGCS 175
             I +  S
Sbjct: 123 LGIIELVS 130

Length = 164

>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane translocase subunit tim17

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTS 164
           NFAV  G+ + I C +  +R KED  +S+++ F +GAA ++  G   M G+     A   
Sbjct: 63  NFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGS-----AILG 117

Query: 165 GLLFAIFQGCSFKNKRHAG 183
             + A+ +G      R A 
Sbjct: 118 ACILAVIEGVGLVLTRWAA 136

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
KOG3225	168	consensus Mitochondrial import inner membrane tran	99.97
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	99.94
PTZ00236	164	mitochondrial import inner membrane translocase su	99.92
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.91
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.88
KOG1652	183	consensus Mitochondrial import inner membrane tran	99.82
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.72
KOG3324	206	consensus Mitochondrial import inner membrane tran	99.54
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	97.73
KOG4608	270	consensus Uncharacterized conserved protein [Funct	97.17
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	90.94
PTZ00236	164	mitochondrial import inner membrane translocase su	90.3
KOG1398	460	consensus Uncharacterized conserved protein [Funct	88.36
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	86.28
KOG4096	75	consensus Uncharacterized conserved protein [Funct	84.93
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	82.65

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.9e-32  Score=215.42  Aligned_cols=148  Identities=21%  Similarity=0.233  Sum_probs=120.6

Q ss_pred             hhhhHHHHHHHHhHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCC-CCcchhhhhhhhh
Q 030115           17 KAIKDVQFKLKELENGYKSWL-AKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQ-SSLNPDAVAPFQQ   94 (183)
Q Consensus        17 ~~~~~~q~~~~~~~~~~k~~~-~~~~~~~e~~~~t~~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~   94 (183)
                      +++..+.|. |+-+.+.-+.+ -+++|++|++.++|+|+.+|+++|+|+++++..-.+    |+.. .++++|+   ++ 
T Consensus        17 ~~~~~l~pe-~~~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~d----P~i~~~~ar~q~---~k-   87 (168)
T KOG3225|consen   17 KQYSLLTPE-EVGDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPND----PTIYRMPARKQV---AK-   87 (168)
T ss_pred             ccccccCcc-ccCChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCC----CchhhhhhHHHH---HH-
Confidence            344444443 33333333444 678999999999999999999999999999965221    1111 2335555   45 


Q ss_pred             hHHhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhhhhhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 030115           95 VQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGC  174 (183)
Q Consensus        95 ~~~~~~~~~~~~~~fa~~g~~ysg~ec~~~~~Rgk~D~~N~~~aG~~tGa~l~~~~G~~~~~~~~~a~~gga~fa~fs~~  174 (183)
                        +|+.+++++++||+++|++|+++||++|++|.|+||+|++++||+||+.++.+.|      |++++.+|++|++||++
T Consensus        88 --dMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~raG------p~a~~~G~agfa~fS~~  159 (168)
T KOG3225|consen   88 --DMGQRSGSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIAGCVTGGSLGYRAG------PKAAAIGCAGFAAFSAA  159 (168)
T ss_pred             --HHHhhhcchhhhhhhhhhhehhHHHHHHHHHhhhchhcceeeeeeeccchhhccc------chhhhhchhHHHHHHHH
Confidence              6999999999999999999999999999999999999999999999999999999      99999999999999999


Q ss_pred             HHhhhcc
Q 030115          175 SFKNKRH  181 (183)
Q Consensus       175 ~~~~g~~  181 (183)
                      |+|+=++
T Consensus       160 id~y~~~  166 (168)
T KOG3225|consen  160 IDKYMRG  166 (168)
T ss_pred             HHHhhhc
Confidence            9887543

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=99.94  E-value=5.4e-26  Score=183.83  Aligned_cols=124  Identities=23%  Similarity=0.261  Sum_probs=111.2

Q ss_pred             hhCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHH
Q 030115           38 AKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNA  117 (183)
Q Consensus        38 ~~~~~~~e~~~~t~~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ys  117 (183)
                      ..+||+++...+++.++.+|.++|.+++++++..+.     |    ..++++..++   +++.+.++++++||++|++|+
T Consensus         5 ~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rns-----p----~g~rl~g~l~---av~~rap~~g~~Fav~g~lys   72 (170)
T TIGR00980         5 TREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNS-----P----KGEKLVGAMR---AIKTRAPVLGGNFAVWGGLFS   72 (170)
T ss_pred             ccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcC-----C----ccchhhHHHH---HHHhhhhhHHHHHHHHHHHHH
Confidence            378999999999999999999999999999964322     1    1345667776   578888999999999999999


Q ss_pred             HHHHHHHHHhhccchhhHHHHHHHHhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 030115          118 GISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKNK  179 (183)
Q Consensus       118 g~ec~~~~~Rgk~D~~N~~~aG~~tGa~l~~~~G~~~~~~~~~a~~gga~fa~fs~~~~~~g  179 (183)
                      ++||+++++|+|||+||+++|||+||++|++++|      +++++.+|+.+++|.++|+..|
T Consensus        73 ~~ec~i~~~R~KeD~~NsiiAG~~TGa~l~~r~G------~~a~~~~aa~gg~~la~ie~~g  128 (170)
T TIGR00980        73 TIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGG------PRAMRGSAILGACILAVIEGVG  128 (170)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999      9999999999999999998765

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=99.92  E-value=1.6e-24  Score=174.21  Aligned_cols=114  Identities=21%  Similarity=0.320  Sum_probs=96.4

Q ss_pred             hhCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHH
Q 030115           38 AKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNA  117 (183)
Q Consensus        38 ~~~~~~~e~~~~t~~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ys  117 (183)
                      ..|||+.++..++..++.+|.+.|.++..+.+..+.     |.    .+++...++   +++.+.++++++||++|++|+
T Consensus         7 ~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rns-----p~----g~rl~g~l~---~~~~rap~~g~~FAv~G~~ys   74 (164)
T PTZ00236          7 SREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNS-----PK----GERFSGGFY---LLRKRAPILGGNFAIWGGLFS   74 (164)
T ss_pred             CcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhC-----CC----cchHHHHHH---HHHhhhhhHHHHHHHHHHHHH
Confidence            589999999999999999999999998888874322     11    445666666   577889999999999999999


Q ss_pred             HHHHHHHHHhhccchhhHHHHHHHHhhhhhhccCCCCCCchHH----HHHHHHHHH
Q 030115          118 GISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVN----AFTSGLLFA  169 (183)
Q Consensus       118 g~ec~~~~~Rgk~D~~N~~~aG~~tGa~l~~~~G~~~~~~~~~----a~~gga~fa  169 (183)
                      ++||+++++|+|||+||+++|||+||++|++++|      +++    ++.+|++++
T Consensus        75 ~~ec~~~~~R~K~D~~Nsi~AG~~TGa~l~~r~G------~~~~~~~a~~Gg~~~~  124 (164)
T PTZ00236         75 TFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGG------WRSAVRNAIFGGILLG  124 (164)
T ss_pred             HHHHHHHHHHccCchHHHHHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999      774    455555533

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.91  E-value=7.9e-24  Score=161.91  Aligned_cols=127  Identities=28%  Similarity=0.386  Sum_probs=112.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHH
Q 030115           41 PLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS  120 (183)
Q Consensus        41 ~~~~e~~~~t~~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~e  120 (183)
                      ||+-+.+.+++.+++.|.++|.+.++++.....     +...+.+++++..++   .++++...++.+||.++++|+++|
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~y~~~~   72 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRP-----PRGSPLRPRLRSILN---AVGRRGPRHGARFGSFGGLYSGIE   72 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccCCcHhHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999652111     111233667888887   477788889999999999999999


Q ss_pred             HHHHHHhhccchhhHHHHHHHHhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHhhhcc
Q 030115          121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKNKRH  181 (183)
Q Consensus       121 c~~~~~Rgk~D~~N~~~aG~~tGa~l~~~~G~~~~~~~~~a~~gga~fa~fs~~~~~~g~~  181 (183)
                      |.++++|+|||+||++++|++||++++++.+      ++.++.+++++++++.+++.++||
T Consensus        73 ~~l~~~R~k~D~~N~~~aG~~aGa~~~~~~g------~~~~~~~~~~~a~~~~~~~~~~~~  127 (128)
T PF02466_consen   73 CALERLRGKDDPWNSAIAGAAAGAVLGLRSG------PRGMASGAALGAAFAAAVEYYGRM  127 (128)
T ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999      999999999999999999999987

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.88  E-value=4.2e-22  Score=158.36  Aligned_cols=114  Identities=24%  Similarity=0.217  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHHHHHHHH
Q 030115           47 AIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRL  126 (183)
Q Consensus        47 ~~~t~~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec~~~~~  126 (183)
                      +..+..++++|.++|.+++.+++....+    + ..+.++++...++   +++++.++++++||+++.+|+++||.++++
T Consensus        35 ~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~----~-~~~~k~rln~~ln---~~~~~g~~~G~~~g~~g~lys~~e~~i~~~  106 (149)
T TIGR00983        35 CFGTGTCYLTGLAIGALNGLRLGLKETQ----S-MPWTKLRLNQILN---MVTRRGPFWGNTLGILALVYNGINSIIEAT  106 (149)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHhhCC----C-CCcHHHHHHHHHH---HHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3477777777777777777777654321    1 1123678888887   578899999999999999999999999999


Q ss_pred             hhccchhhHHHHHHHHhhhhhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 030115          127 RGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGC  174 (183)
Q Consensus       127 Rgk~D~~N~~~aG~~tGa~l~~~~G~~~~~~~~~a~~gga~fa~fs~~  174 (183)
                      |+|||+||+++||++||++|+.++|      +++++.+|+.-+++.++
T Consensus       107 R~k~D~~Nsv~AGa~TGal~~~~~G------~r~~~~g~~~G~~l~~~  148 (149)
T TIGR00983       107 RGKHDDFNSVAAGALTGALYKSTRG------LRGMARSGALGATAAGV  148 (149)
T ss_pred             hccchhhHhHHHHHHHHHHHHhccC------hHHHHHHhHHHHHHhhc
Confidence            9999999999999999999999999      99999998887776553

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.4e-21  Score=158.04  Aligned_cols=125  Identities=18%  Similarity=0.231  Sum_probs=104.8

Q ss_pred             hhCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHH
Q 030115           38 AKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNA  117 (183)
Q Consensus        38 ~~~~~~~e~~~~t~~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ys  117 (183)
                      ..+||+.+.+..+...+.||.+-|..+..+..-.+.     |.    .......++   ..+.+.+.++++||+||++||
T Consensus         5 sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~na-----p~----G~r~~gg~~---av~~~ap~~ggsFAvwgglfS   72 (183)
T KOG1652|consen    5 SREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNA-----PS----GARLVGGIS---AVKMRAPQSGGSFAVWGGLFS   72 (183)
T ss_pred             cCCCCCceeeccccchhhhcccccceeeeeeeeecC-----Cc----ccccccchh---hhhccCcccccceeeeechhh
Confidence            468999999999999999999999988888874332     21    112233332   345677889999999999999


Q ss_pred             HHHHHHHHHhhccchhhHHHHHHHHhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 030115          118 GISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKNKR  180 (183)
Q Consensus       118 g~ec~~~~~Rgk~D~~N~~~aG~~tGa~l~~~~G~~~~~~~~~a~~gga~fa~fs~~~~~~g~  180 (183)
                      .++|++..+|+|||.||++++|++||++|+.++|      +++++.+++.|+++.+.|+-++.
T Consensus        73 t~dC~Lv~~R~KeDpwNsivsGa~TGg~La~r~g------~~a~~~sa~~~g~~lamieg~g~  129 (183)
T KOG1652|consen   73 TVDCALVAIRKKEDPWNSIVSGAATGGLLAARGG------PKAMLTSAITGGLLLAMIEGLGI  129 (183)
T ss_pred             HHHHHHHHHhcccchHHHHHHHhhccceeecccc------HHHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999999999999      99999999999999999887653

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=4.8e-19  Score=144.08  Aligned_cols=158  Identities=15%  Similarity=0.128  Sum_probs=126.7

Q ss_pred             CCchhhhHHHHHHHHhHHHHHHHHhhC-----CChHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC--CCC---------
Q 030115           14 LPQKAIKDVQFKLKELENGYKSWLAKQ-----PLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSS--LPT---------   77 (183)
Q Consensus        14 ~p~~~~~~~q~~~~~~~~~~k~~~~~~-----~~~~e~~~~t~~g~~~G~~~G~f~g~v~~~~~~~--~~~---------   77 (183)
                      +.+++...+++. |+-..++.......     .|.-|++++++.|+.+|..+|.|.+++.......  ++.         
T Consensus        14 ~s~~~~~~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl   92 (191)
T COG5596          14 PSPNAYNILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGL   92 (191)
T ss_pred             CCCCcccccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccce
Confidence            335566666666 44444444444333     5999999999999999999999999998543321  110         


Q ss_pred             --CCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhhhhhhccCCCCC
Q 030115           78 --PPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGA  155 (183)
Q Consensus        78 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec~~~~~Rgk~D~~N~~~aG~~tGa~l~~~~G~~~~  155 (183)
                        .....+.++|++.+++   ++..+....++||+++|..|++.+|+|+.+|+|||+.|++.+|++||+.+..+.|    
T Consensus        93 ~~~i~~~~~r~q~~~~~~---n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g----  165 (191)
T COG5596          93 FSTIDCTPFRLQLKEQLN---NAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAG----  165 (191)
T ss_pred             eeccccchHHHHHhhccc---cccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhcc----
Confidence              0111345788888888   5788999999999999999999999999999999999999999999999999999    


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhhcc
Q 030115          156 NPAVNAFTSGLLFAIFQGCSFKNKRH  181 (183)
Q Consensus       156 ~~~~~a~~gga~fa~fs~~~~~~g~~  181 (183)
                        ++++..++++|++|++++...-++
T Consensus       166 --~qa~~~~~a~~aa~s~~~~~~~~~  189 (191)
T COG5596         166 --PQAMPMGGAGFAAFSAGITLAMKS  189 (191)
T ss_pred             --ccccccCccchhhhhhhHHhhhhc
Confidence              999999999999999999877654

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=1.4e-14  Score=119.07  Aligned_cols=116  Identities=21%  Similarity=0.178  Sum_probs=92.0

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHHHHH
Q 030115           45 EAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVM  123 (183)
Q Consensus        45 e~~~-~t~~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec~~  123 (183)
                      |.+. .+...+..|.++|.|.|++......+     .....++++.++++   +..++...++++.++++.+|+.+|..+
T Consensus        75 E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e-----~~~~~Klr~nrILN---~~t~~G~~~gN~lG~laL~YsaiesgI  146 (206)
T KOG3324|consen   75 ENLTFGTGWAYLTGSAIGAFNGLILGLKNTE-----NGASGKLRLNRILN---SVTRRGRFWGNTLGSLALMYSAIESGI  146 (206)
T ss_pred             hhhheeccchhccchhhhhHHHHHHhhhcCC-----CCCccchhHHHHhh---hccccccccccchhHHHHHHHHHHHHH
Confidence            6666 78888888999999999988754321     11233666666665   345566679999999999999999999


Q ss_pred             HHHhhccchhhHHHHHHHHhhhhhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 030115          124 KRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGC  174 (183)
Q Consensus       124 ~~~Rgk~D~~N~~~aG~~tGa~l~~~~G~~~~~~~~~a~~gga~fa~fs~~  174 (183)
                      +..|+|||++|++.||.+||+++....|      ++++..+++..++..++
T Consensus       147 ~~~R~~dd~lnsv~AGalTGalyrs~~G------lr~~av~ga~g~~aa~a  191 (206)
T KOG3324|consen  147 EATRGKDDDLNSVAAGALTGALYRSTRG------LRAAAVAGAVGGTAAAA  191 (206)
T ss_pred             HHhhccccchhhhhhhhhhhhhhhcCCC------chHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999      89988777665554443

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=2.3e-06  Score=70.19  Aligned_cols=75  Identities=21%  Similarity=0.270  Sum_probs=59.3

Q ss_pred             CchhhhhHHH-HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhhhhhhccCCCCCCchHHHHH---------HHHHHHH
Q 030115          101 GPLVQARNFA-VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFT---------SGLLFAI  170 (183)
Q Consensus       101 ~~~~~~~~fa-~~g~~ysg~ec~~~~~Rgk~D~~N~~~aG~~tGa~l~~~~G~~~~~~~~~a~~---------gga~fa~  170 (183)
                      .....+.||+ ++|++++.+.|+.+++|.+.|.||....|+++|..++....+  .+...+.|.         +.+++++
T Consensus        77 ~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~--y~~~ns~I~~~r~k~d~~~~iaaG~  154 (191)
T COG5596          77 LVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLI--YAGINSIITALRAKHDIANAIAAGA  154 (191)
T ss_pred             cccccCccccccccceeeccccchHHHHHhhccccccccccccccccceeeee--cccchhhhhhhhhccccchhhhhhh
Confidence            3355788898 899999999999999999999999999999999999887753  122444555         6666777


Q ss_pred             HHHHHHh
Q 030115          171 FQGCSFK  177 (183)
Q Consensus       171 fs~~~~~  177 (183)
                      |-++.++
T Consensus       155 ~TGa~~~  161 (191)
T COG5596         155 FTGAALA  161 (191)
T ss_pred             hhhHHHH
Confidence            7776644

>KOG4608 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=4.5e-05  Score=65.09  Aligned_cols=54  Identities=24%  Similarity=0.279  Sum_probs=48.8

Q ss_pred             hhcCchhhhhHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhhhhhhccC
Q 030115           98 VAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG  151 (183)
Q Consensus        98 ~~~~~~~~~~~fa~~g~~ysg~ec~~~~~Rgk~D~~N~~~aG~~tGa~l~~~~G  151 (183)
                      +.++.+..|=..|.+.+.|-++...+..+|+|||+||=+++|.+||+++.+.-|
T Consensus       127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~g  180 (270)
T KOG4608|consen  127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVG  180 (270)
T ss_pred             HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehh
Confidence            456677777788999999999999999999999999999999999999988877

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=90.94  E-value=3.6  Score=33.63  Aligned_cols=121  Identities=12%  Similarity=0.023  Sum_probs=88.6

Q ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHHH
Q 030115           43 PVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC  121 (183)
Q Consensus        43 ~~e~~~-~t~~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~ec  121 (183)
                      +++++- ...+|.+.|++++++-+..+.....++         +..+..+.+++   ..-..+.+.--+++.++...++.
T Consensus        13 ~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl---------~g~l~av~~ra---p~~g~~Fav~g~lys~~ec~i~~   80 (170)
T TIGR00980        13 ILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKL---------VGAMRAIKTRA---PVLGGNFAVWGGLFSTIDCAVVA   80 (170)
T ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchh---------hHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHH
Confidence            456666 778888888888888877776454431         33333355443   23334567777888888999988


Q ss_pred             HHHHHhhccchhhHHHHHHHHhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHhhhcc
Q 030115          122 VMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKNKRH  181 (183)
Q Consensus       122 ~~~~~Rgk~D~~N~~~aG~~tGa~l~~~~G~~~~~~~~~a~~gga~fa~fs~~~~~~g~~  181 (183)
                      .-+|-=-.+-++-..+.|.+-++-=+.+.=      ...++.+++.+++|.++=-.+.|+
T Consensus        81 ~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~------~~~aa~gg~~la~ie~~g~~~~~~  134 (170)
T TIGR00980        81 IRKKEDPWNSIISGFLTGAALAVRGGPRAM------RGSAILGACILAVIEGVGLVLTRW  134 (170)
T ss_pred             HhcccchHHHHHHHHHHHHHHHhccChHHH------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            877766688899999999998887777776      889999999999999876555443

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=90.30  E-value=4.1  Score=33.13  Aligned_cols=30  Identities=20%  Similarity=0.089  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 030115           44 VEAAIVTATTAINGAAIGAFLGVMTQDLTS   73 (183)
Q Consensus        44 ~e~~~~t~~g~~~G~~~G~f~g~v~~~~~~   73 (183)
                      ++++-.+...+..|+.++.|+..+.++...
T Consensus        16 ~dd~G~af~~G~vgG~~~~~~~G~rnsp~g   45 (164)
T PTZ00236         16 IEDMGGAFSMGCIGGFIWHFLKGMRNSPKG   45 (164)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            355664444444445555555555555444

>KOG1398 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.36  E-value=0.63  Score=42.77  Aligned_cols=49  Identities=12%  Similarity=0.158  Sum_probs=42.2

Q ss_pred             cCchhhhhHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhhhhhh
Q 030115          100 GGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSL  148 (183)
Q Consensus       100 ~~~~~~~~~fa~~g~~ysg~ec~~~~~Rgk~D~~N~~~aG~~tGa~l~~  148 (183)
                      +.....+.-.+.+-++|..+.|++.+++-+||..|.++||.+++..+..
T Consensus       297 renlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmf  345 (460)
T KOG1398|consen  297 RENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMF  345 (460)
T ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeee
Confidence            3445667778899999999999999999999999999999998866543

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=86.28  E-value=1.3  Score=30.97  Aligned_cols=66  Identities=14%  Similarity=0.108  Sum_probs=36.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHHH
Q 030115           41 PLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS  120 (183)
Q Consensus        41 ~~~~e~~~~t~~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~e  120 (183)
                      +|.-|.-.-..+|...|..+|.++|.++.-...   .++     +.-++.       +++-+..++..|+.+=++=+.++
T Consensus         2 sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g---~~~-----~~~~~~-------lg~~~l~sg~tFG~Fm~iGs~IR   66 (67)
T PF10247_consen    2 SCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYG---ARG-----RGLMRT-------LGKYMLGSGATFGFFMSIGSVIR   66 (67)
T ss_pred             cHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccC---CCC-----cchHhH-------HhHHHhcchhHHHHHHhhhcccc
Confidence            455555556666667777777777776653221   111     222322       34445567777887766655555


Q ss_pred             H
Q 030115          121 C  121 (183)
Q Consensus       121 c  121 (183)
                      |
T Consensus        67 c   67 (67)
T PF10247_consen   67 C   67 (67)
T ss_pred             C
Confidence            4

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

>KOG4096 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.93  E-value=0.84  Score=32.37  Aligned_cols=68  Identities=19%  Similarity=0.214  Sum_probs=44.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHHHHHHHH
Q 030115           40 QPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGI  119 (183)
Q Consensus        40 ~~~~~e~~~~t~~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~ysg~  119 (183)
                      .+|.-|.-...++|...|.+.|.++|.+...-..    ++    -+.-++.       +++-+..++..|+.+=++=+++
T Consensus         5 pSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g----~~----g~~~vr~-------iGkt~~~SagtFG~FM~igs~I   69 (75)
T KOG4096|consen    5 PSCFDKIKMGLMMGGAVGGATGALFGGFAALRYG----PR----GRGLVRT-------IGKTMLQSAGTFGLFMGIGSGI   69 (75)
T ss_pred             ccHHHHHHHHHHHHhhhhhhhhhhccchhheeec----CC----hhHHHHH-------HhHHHHhccchhhhhhhhhhhe
Confidence            4576676667777777788888888877763221    11    0222222       3455667888999988888888


Q ss_pred             HHH
Q 030115          120 SCV  122 (183)
Q Consensus       120 ec~  122 (183)
                      +|.
T Consensus        70 r~~   72 (75)
T KOG4096|consen   70 RCG   72 (75)
T ss_pred             ecC
Confidence            775

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=82.65  E-value=6.8  Score=31.21  Aligned_cols=119  Identities=13%  Similarity=0.013  Sum_probs=66.9

Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcchhhhhhhhhhHHhhcCchhhhhHHHHHH
Q 030115           34 KSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVIT  113 (183)
Q Consensus        34 k~~~~~~~~~~e~~~~t~~g~~~G~~~G~f~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g  113 (183)
                      +.|.  |+.-.....+.++|.+.|+++|++.|..+.....+.     +..++..+..+-++.-.++.....++..|..+ 
T Consensus        28 R~~~--e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~-----k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~-   99 (149)
T TIGR00983        28 RGWF--EDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWT-----KLRLNQILNMVTRRGPFWGNTLGILALVYNGI-   99 (149)
T ss_pred             CChh--hhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcH-----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-
Confidence            4454  444578999999999999999999999985332210     12235555555554433444444444444443 


Q ss_pred             HHHHHHHHHHHHHhhccchhhHHHHHHHHhhhhhhccCCCCCCchHHHHHHHHHH
Q 030115          114 GVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLF  168 (183)
Q Consensus       114 ~~ysg~ec~~~~~Rgk~D~~N~~~aG~~tGa~l~~~~G~~~~~~~~~a~~gga~f  168 (183)
                        -+.++..-.+-=-.+-+.-..+.|.+--+--+++.-      ...++.++++.
T Consensus       100 --e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~------~~g~~~G~~l~  146 (149)
T TIGR00983       100 --NSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGM------ARSGALGATAA  146 (149)
T ss_pred             --HHHHHHHhccchhhHhHHHHHHHHHHHHhccChHHH------HHHhHHHHHHh
Confidence              334443333322355566666666665555555555      44555544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 30/193 (15%), Positives = 64/193 (33%), Gaps = 43/193 (22%)

Query: 1   MEKGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAK--------QPLPVEAA--IVT 50
            +   + ++S+ +     + +  F  K++++  KS L+K            V     +  
Sbjct: 14  HQYQYKDILSVFE--DAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 51  ATTAINGAAIGAFLG-VMTQD---LTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQA 106
              +     +  F+  V+  +   L S + T   Q S+        +Q   +     V A
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI--EQRDRLYNDNQVFA 127

Query: 107 RNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGG------ANPAVN 160
           +       V+        RL+    L+ +++      A   L+ G+ G      A     
Sbjct: 128 KYN-----VS--------RLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 161 A--FTSGLLFAIF 171
           +      + F IF
Sbjct: 173 SYKVQCKMDFKIF 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00