Citrus Sinensis ID: 030117

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDDVDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSSKGERDTVAAAV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHcccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEcccccccccccccccccccccccEcccccccccccccccccHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEccccccccHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccccEEEEEc
Coil and Loop (DISEMBL)
mllgkrprppmkrttslseisfdldgggddsssaaashqqknptaaltkhpgsggggvddvdQRFLStvssprnnnnnnnrhsadfletphflrtcglckrrlvpgrdiymyrgdsafCSLECRQQQMnqderkqkctshghasasASASAAKKQAAAAASSTAarsqvsskgerdtvaaav
Flexible Loop (DISEMBL)
mllgkrprppmkrttslsEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDDVDQRFLSTVssprnnnnnnnrhsadfletphFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTaarsqvsskgerdtvaaav
Low Complexity Region (SEG)
MLLGKRPRPPMKRTTSLSEISFDLdgggddsssaaasHQQKNPTAALTKHPgsggggvddvdQRFLSTVSSPRnnnnnnnRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQKCTSHGHasasasasaakkqaaaaasstaarsqvsskGERDTVAAAV
Disordered region (IsUnstruct)
*************************************************************************************FLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLEC***********************************************************
Disordered Region (DISOPRED)
********************************************************GVDDVDQR************************TPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMN**********************************************DTVAAAV
Disordered Region (DISEMBL)
**************TSLSEISFDLD*****************************GGGVDDVDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQ********************************************************
Disordered Region (DISPRO)
************************D**************************GSGGGGVDDVDQRFLSTVSS**************FLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQKC*********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDDVDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSSKGERDTVAAAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
388505518	148	unknown [Lotus japonicus]	0.791	0.972	0.541	1e-39
255545646	172	conserved hypothetical protein [Ricinus	0.813	0.860	0.582	2e-39
224082162	148	predicted protein [Populus trichocarpa]	0.807	0.993	0.522	1e-38
359492831	208	PREDICTED: uncharacterized protein LOC10	0.846	0.740	0.534	6e-38
224066919	140	predicted protein [Populus trichocarpa]	0.763	0.992	0.529	5e-37
341833958	161	hypothetical protein [Pyrus x bretschnei	0.780	0.881	0.556	5e-35
388501536	154	unknown [Lotus japonicus]	0.840	0.993	0.5	5e-35
351720923	150	uncharacterized protein LOC100527853 [Gl	0.818	0.993	0.486	4e-34
358349491	156	hypothetical protein MTR_145s0001 [Medic	0.692	0.807	0.541	6e-34
297842579	162	hypothetical protein ARALYDRAFT_476964 [	0.818	0.919	0.526	2e-33

>gi|388505518|gb|AFK40825.1| unknown [Lotus japonicus]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/181 (54%), Positives = 110/181 (60%), Gaps = 37/181 (20%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDD 60
           M+LGKRPRPPMKRTTS+SEI+FDL+   +D  +A   H               G  G + 
Sbjct: 1   MMLGKRPRPPMKRTTSMSEITFDLNTAPEDGGAAGNRH--------------GGAAGFNG 46

Query: 61  VDQ-RFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFC 119
            DQ R L+TVS PRN+      HS DF +TP FLR C LCKRRL PGRDIYMYRGDSAFC
Sbjct: 47  SDQSRILATVS-PRNHRT----HSVDFAQTPDFLRCCFLCKRRLAPGRDIYMYRGDSAFC 101

Query: 120 SLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSSKGERDTVA 179
           SLECRQQQMNQDERK KC             A+KKQ  A A S       S+KGE  TV 
Sbjct: 102 SLECRQQQMNQDERKDKC-----------CVASKKQVVATAGSQV----TSTKGE--TVV 144

Query: 180 A 180
           A
Sbjct: 145 A 145

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545646|ref|XP_002513883.1| conserved hypothetical protein [Ricinus communis] gi|223546969|gb|EEF48466.1| conserved hypothetical protein [Ricinus communis]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/175 (58%), Positives = 115/175 (65%), Gaps = 27/175 (15%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDD 60
           MLLGKRPRPPMKRTTSLSEI+FDLD  G   S+  A        A         GGG   
Sbjct: 1   MLLGKRPRPPMKRTTSLSEITFDLDTNGSCESAQQA--------AGFGGDGTGTGGGQQQ 52

Query: 61  VDQRFLSTVS-SPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFC 119
           +DQRFL+  + SPRN+     R SADFLET HFLR+C LC RRLV GRDIYMYRGDSAFC
Sbjct: 53  LDQRFLAAATISPRNHR----RASADFLETAHFLRSCSLCHRRLVTGRDIYMYRGDSAFC 108

Query: 120 SLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSSKGE 174
           SLECRQQQMNQDERK+KC+            A+KK+     SST A + VS+KGE
Sbjct: 109 SLECRQQQMNQDERKEKCS-----------LASKKE---VTSSTVAGADVSAKGE 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082162|ref|XP_002306588.1| predicted protein [Populus trichocarpa] gi|118489780|gb|ABK96690.1| unknown [Populus trichocarpa x Populus deltoides] gi|222856037|gb|EEE93584.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 119/180 (66%), Gaps = 33/180 (18%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDD 60
           MLLGKRPR PMKRTTSL+EI FDL+    +++   + H QK            G GG+  
Sbjct: 1   MLLGKRPRNPMKRTTSLTEIKFDLNTASSEAA-PPSDHPQKQ----------VGYGGM-- 47

Query: 61  VDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCS 120
           +DQR  +   SPR ++    R SADFLETP+FLR C LCKRRL+PGRDIYMY+GDSAFCS
Sbjct: 48  IDQRSSAATGSPRTSHR---RASADFLETPNFLRACSLCKRRLIPGRDIYMYKGDSAFCS 104

Query: 121 LECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSSKGERDTVAA 180
            ECRQQQM+ DERK+KC+            A+KK+A ++ ++T    +VS+KGE  TVAA
Sbjct: 105 QECRQQQMSLDERKEKCS-----------LASKKEAVSSTTAT----EVSAKGE--TVAA 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492831|ref|XP_002285807.2| PREDICTED: uncharacterized protein LOC100252409 [Vitis vinifera]

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 104/161 (64%), Gaps = 7/161 (4%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDD 60
           MLLGKRPRPPMKRTTS++E + D +      S +    + +  +      P     GVD 
Sbjct: 52  MLLGKRPRPPMKRTTSMTEFTLDPNSVQQPPSDSQNPFKDRPKSVGFGGDPYRQPSGVDG 111

Query: 61  --VDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAF 118
              D RFLS VS PRN      R+SADF++  HFLR C LCKRRLV GRDIYMYRGDSAF
Sbjct: 112 YGFDHRFLSAVS-PRNPR----RYSADFVDNSHFLRACCLCKRRLVSGRDIYMYRGDSAF 166

Query: 119 CSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAA 159
           CSLECRQQQMNQDERK+KC+      A+AS + ++ +  AA
Sbjct: 167 CSLECRQQQMNQDERKEKCSLASKKEATASTAGSEGETVAA 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066919|ref|XP_002302279.1| predicted protein [Populus trichocarpa] gi|222844005|gb|EEE81552.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 109/170 (64%), Gaps = 31/170 (18%)

Query: 11  MKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDDVDQRFLSTVS 70
           MKRTTS SEI+FDL+    +++   + H QK           +G GG+  +DQRFLS   
Sbjct: 1   MKRTTSFSEITFDLNTATSEAAPPPSDHHQKQ----------AGYGGL--IDQRFLSDAG 48

Query: 71  SPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQ 130
           SPR       R SADFLET HFLR C LCKRRL+PGRDIYMYRGDSAFCSLECRQQQM+ 
Sbjct: 49  SPRTTYR---RASADFLETAHFLRACSLCKRRLIPGRDIYMYRGDSAFCSLECRQQQMSL 105

Query: 131 DERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSSKGERDTVAA 180
           DERK+KC+            A+KK++     ST   ++VS+KGE  TVAA
Sbjct: 106 DERKEKCS-----------LASKKESI----STTTATEVSAKGE-STVAA 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341833958|gb|AEK94314.1| hypothetical protein [Pyrus x bretschneideri]

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 104/158 (65%), Gaps = 16/158 (10%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQ----KNPTAAL------TKH 50
           M LGKRPRPPMKRTTS+SEI+FD      ++ S  A H Q     NP   L         
Sbjct: 1   MSLGKRPRPPMKRTTSMSEITFD-----PNTISTEAPHSQPSDPNNPYQPLALWGGGGSG 55

Query: 51  PGSGGGGVDDVDQRFLSTVSSPRN-NNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDI 109
            G  GGG+D +DQR +  + SP + +  N  R+SADF ET HFL+ CGLCKRRL+PGRDI
Sbjct: 56  GGGRGGGLDGLDQRLMMKLPSPSSASPRNQKRNSADFGETAHFLKACGLCKRRLIPGRDI 115

Query: 110 YMYRGDSAFCSLECRQQQMNQDERKQKCTSHGHASASA 147
           YMYRGD+AFCSLECRQQQ+N DERK KC+S      SA
Sbjct: 116 YMYRGDTAFCSLECRQQQINLDERKDKCSSTAGHQVSA 153

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501536|gb|AFK38834.1| unknown [Lotus japonicus]

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 107/180 (59%), Gaps = 27/180 (15%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDD 60
           MLLGKRPRPPMKRTTS+SEI+ DL+     ++   +                        
Sbjct: 1   MLLGKRPRPPMKRTTSMSEITLDLNTTTVVTTDVRSGGGGSGGFNN-------------G 47

Query: 61  VDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCS 120
           +DQ  +     PRN+     RHS+DF  TP FLR+C LC+RRLVPGRDIYMYRGDSAFCS
Sbjct: 48  LDQTKVLAPVPPRNHR----RHSSDFTGTPDFLRSCCLCRRRLVPGRDIYMYRGDSAFCS 103

Query: 121 LECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSSKGERDTVAA 180
           LECRQQQM QDERK+K            ASA K+  AA ASS +  +  +SKGE  TVAA
Sbjct: 104 LECRQQQMKQDERKEKL---------LVASAKKQVVAAPASSGSQVTNTASKGE-TTVAA 153

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720923|ref|NP_001238472.1| uncharacterized protein LOC100527853 [Glycine max] gi|255633378|gb|ACU17046.1| unknown [Glycine max]

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/179 (48%), Positives = 107/179 (59%), Gaps = 30/179 (16%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDD 60
           MLLGKRPRPPMKRTTS+SE++ DL+     +++ AA++QQ++         G G G   D
Sbjct: 1   MLLGKRPRPPMKRTTSMSEMTLDLN----TAAADAAANQQRS---------GVGPGAAAD 47

Query: 61  VDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCS 120
              R L+T    R       RHS+DF +TP FLR C LCKR LVPG DIYMYRGD+AFCS
Sbjct: 48  QTTRMLATPKILR-------RHSSDFGDTPPFLRACSLCKRSLVPGHDIYMYRGDNAFCS 100

Query: 121 LECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSSKGERDTVA 179
           LECRQQQMNQDERK+K          A+  +  + A A A          +KGE   VA
Sbjct: 101 LECRQQQMNQDERKEKFVMASKKKVVATPPSGSQVAVATA----------TKGETTVVA 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358349491|ref|XP_003638769.1| hypothetical protein MTR_145s0001 [Medicago truncatula] gi|355504704|gb|AES85907.1| hypothetical protein MTR_145s0001 [Medicago truncatula]

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 94/146 (64%), Gaps = 20/146 (13%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKH-PGSG----- 54
           M+LGKRPRPPMKRTTS+SEI+FDL+       +        N      +H PG G     
Sbjct: 1   MMLGKRPRPPMKRTTSMSEITFDLN-------TVTTEEDPNNNNNLFNRHGPGVGPYGPY 53

Query: 55  ---GGGVDDVDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYM 111
                G++  DQ  + ++ SPRN      R+SAD    P FLR+C LCKRRLVPGRDIYM
Sbjct: 54  PPTSPGINGSDQSRVMSMVSPRNLR----RNSADMTHNPDFLRSCFLCKRRLVPGRDIYM 109

Query: 112 YRGDSAFCSLECRQQQMNQDERKQKC 137
           Y+GDSAFCSLECRQQQMNQDE+K KC
Sbjct: 110 YKGDSAFCSLECRQQQMNQDEKKDKC 135

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842579|ref|XP_002889171.1| hypothetical protein ARALYDRAFT_476964 [Arabidopsis lyrata subsp. lyrata] gi|297335012|gb|EFH65430.1| hypothetical protein ARALYDRAFT_476964 [Arabidopsis lyrata subsp. lyrata]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 104/173 (60%), Gaps = 24/173 (13%)

Query: 1   MLLGKRPRPPMKRTTSLSEISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGG----G 56
           MLLGKR RPP+ RTTSLSEI FDL+   +   S      Q+NPT  +    GS G     
Sbjct: 1   MLLGKRQRPPINRTTSLSEIKFDLNLPSESEPS-----NQQNPT--VVSPYGSNGQAVTA 53

Query: 57  GVDD----VDQRFLSTVSSPRNNNNNNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMY 112
            VD     +DQR LS VSS      N  RHS DF +  HFLR+C LC+R LVPGRDIYMY
Sbjct: 54  AVDQNRAFLDQRLLSMVSS----RGNLRRHSGDFSDAGHFLRSCSLCERLLVPGRDIYMY 109

Query: 113 RGDSAFCSLECRQQQMNQDERKQKCTSHGHA-----SASASASAAKKQAAAAA 160
           RGD AFCS ECRQ+QM QDERK+K  S   A     +A A A   K +AAAA 
Sbjct: 110 RGDKAFCSSECRQEQMAQDERKEKGKSAPPAKEPAVTAPARAKPGKGRAAAAV 162

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2029421	162	AT1G78020 [Arabidopsis thalian	0.697	0.783	0.528	8.2e-28
TAIR|locus:2030611	147	AT1G22160 "AT1G22160" [Arabido	0.670	0.829	0.529	1.8e-25
TAIR|locus:504955245	126	AT4G39795 "AT4G39795" [Arabido	0.379	0.547	0.540	1.2e-21
TAIR|locus:2177739	113	AT5G65040 "AT5G65040" [Arabido	0.247	0.398	0.644	1.6e-16
TAIR|locus:2171047	177	AT5G47060 "AT5G47060" [Arabido	0.406	0.418	0.5	1.1e-14
TAIR|locus:2129331	159	AT4G17670 "AT4G17670" [Arabido	0.379	0.433	0.492	7.9e-14
TAIR|locus:2042416	93	AT2G44670 "AT2G44670" [Arabido	0.269	0.526	0.551	3.9e-12
TAIR|locus:2155174	150	AT5G49120 "AT5G49120" [Arabido	0.258	0.313	0.549	2.2e-11
TAIR|locus:505006184	126	AT1G53885 "AT1G53885" [Arabido	0.241	0.349	0.568	2.5e-10
TAIR|locus:2027278	222	AT1G74940 "AT1G74940" [Arabido	0.247	0.202	0.543	2.5e-10

TAIR|locus:2029421 AT1G78020 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 75/142 (52%), Positives = 83/142 (58%)

Query:     1 MLLGKRPRPPMKRTTSLSEISFDLXXXXXXXXXXXXXHQQKNPTAALTKHPXXXXXXXXX 60
             MLLGKR RPP+ RTTSLSEI FDL             +QQK PT A              
Sbjct:     1 MLLGKRQRPPINRTTSLSEIKFDLNLPSESEPS----NQQK-PTVASPYGSNGQAVTAAV 55

Query:    61 XX------QRFLSTVSSPRXXXXXXXRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRG 114
                     QR LS V+ PR       RHS DF +  HFLR+C LC+R LVPGRDIYMYRG
Sbjct:    56 DQNRGFLDQRLLSMVT-PRGNLR---RHSGDFSDAGHFLRSCALCERLLVPGRDIYMYRG 111

Query:   115 DSAFCSLECRQQQMNQDERKQK 136
             D AFCS ECRQ+QM QDERK+K
Sbjct:   112 DKAFCSSECRQEQMAQDERKEK 133

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2030611 AT1G22160 "AT1G22160" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 72/136 (52%), Positives = 82/136 (60%)

Query:     1 MLLGKRPRPPMKRTTSLSEISFDLXXXXXXXXXXXXXHQQKNPTAALTKHPXXXXXXXXX 60
             MLLGKR RPP+KRTTSLSEI FDL             HQ +     + +H          
Sbjct:     1 MLLGKRQRPPIKRTTSLSEIKFDLNQPSEQEPSD---HQIQ--LVNVDEH---RQVHQRL 52

Query:    61 XXQRFLSTVSSPRXXXXXXXRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCS 120
               QR L+ VS PR       RHS+D+ E   FLR+C LCKR LV GRDIYMYRGD AFCS
Sbjct:    53 LDQRLLAMVS-PRGTQR---RHSSDYSED--FLRSCSLCKRLLVHGRDIYMYRGDRAFCS 106

Query:   121 LECRQQQMNQDERKQK 136
             LECRQQQ+  DERK+K
Sbjct:   107 LECRQQQITVDERKEK 122

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955245 AT4G39795 "AT4G39795" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 40/74 (54%), Positives = 46/74 (62%)

Query:    63 QRFLSTVSSPRXXXXXXXRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLE 122
             QRFLS V+  R       R S        FL  CG CKR L PGRDIYMY+GD+AFCS+E
Sbjct:    49 QRFLSPVNHQRNERKYGGRSSPS-----SFLVNCGFCKRGLAPGRDIYMYKGDAAFCSIE 103

Query:   123 CRQQQMNQDERKQK 136
             CR+QQM  DE K +
Sbjct:   104 CREQQMEHDEGKTR 117

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177739 AT5G65040 "AT5G65040" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 29/45 (64%), Positives = 36/45 (80%)

Query:    92 FLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQK 136
             FL+TC LC R L   RDIYMYRG++AFCSLECR++Q+  DE+K K
Sbjct:    57 FLKTCSLCNRSLCHHRDIYMYRGNNAFCSLECREKQIKLDEKKAK 101

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171047 AT5G47060 "AT5G47060" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 38/76 (50%), Positives = 49/76 (64%)

Query:    68 TVSSPRXXXXXXXRHSADF-LETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQ 126
             +VSSPR        H   F ++ PHFL +C LCK+ L   RDIYMYRGD+ FCS ECRQ+
Sbjct:    73 SVSSPRSVVSGRF-HDFRFDIQQPHFLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQE 131

Query:   127 QMNQDERKQKCTSHGH 142
             Q+ +DE K+K  +  H
Sbjct:   132 QIERDEAKEKKQNLSH 147

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129331 AT4G17670 "AT4G17670" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 35/71 (49%), Positives = 46/71 (64%)

Query:    68 TVSSPRXXXXXXXRHSADFLE--TPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ 125
             +VSSPR       R    +     PHFL +C LCK+RL   RDI+MYRGD+ FCS ECR+
Sbjct:    50 SVSSPRSGKFHDFRFDNSYYGYGQPHFLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECRE 109

Query:   126 QQMNQDERKQK 136
             +Q+ +DE K+K
Sbjct:   110 EQIERDEAKEK 120

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2042416 AT2G44670 "AT2G44670" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 27/49 (55%), Positives = 36/49 (73%)

Query:    88 ETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQK 136
             E PHFL +C LC++ L    DI+MYRGD AFCS ECR++Q+  DE K++
Sbjct:    12 EEPHFLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESDEAKER 60

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155174 AT5G49120 "AT5G49120" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 28/51 (54%), Positives = 38/51 (74%)

Query:    92 FLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDE----RKQKCT 138
             FL  C LC+R+L+P +DIYMY+GD AFCS+ECR +QM  DE    R++ C+
Sbjct:    68 FLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDEEESLRREYCS 118

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006184 AT1G53885 "AT1G53885" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 25/44 (56%), Positives = 33/44 (75%)

Query:    92 FLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQ 135
             FL+TC LC ++L   +D+YMYRGD  FCS ECR+ QM  D+RK+
Sbjct:    42 FLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDDRKE 85

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027278 AT1G74940 "AT1G74940" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query:    92 FLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQKC 137
             FL +C LCK++L  G+DIYMY+G+  FCS ECR  Q+  DER+++C
Sbjct:   150 FLSSCCLCKKKL-QGKDIYMYKGEMGFCSAECRSVQIMNDERQEQC 194

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
pfam04570	59	pfam04570, DUF581, Protein of unknown function (DU	4e-27

>gnl|CDD|218153 pfam04570, DUF581, Protein of unknown function (DUF581)

 Score = 97.0 bits (242), Expect = 4e-27
 Identities = 32/57 (56%), Positives = 38/57 (66%)

Query: 78  NNNRHSADFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERK 134
            +         T HFL +C LCK++L PG+DIYMYRG+ AFCS ECRQQQM  DE K
Sbjct: 2   PSAAGDGGGSPTGHFLSSCFLCKKKLGPGKDIYMYRGEKAFCSEECRQQQMEMDEAK 58

Family of uncharacterized proteins. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
PF04570	58	DUF581: Protein of unknown function (DUF581); Inte	99.94
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	95.15
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	94.56
PF06467	43	zf-FCS: MYM-type Zinc finger with FCS sequence mot	94.25
COG2075	66	RPL24A Ribosomal protein L24E [Translation, riboso	91.47
COG4068	64	Uncharacterized protein containing a Zn-ribbon [Fu	90.28
PRK00418	62	DNA gyrase inhibitor; Reviewed	81.41
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	81.25

>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins

Probab=99.94  E-value=8.3e-28  Score=168.67  Aligned_cols=51  Identities=59%  Similarity=1.083  Sum_probs=48.0

Q ss_pred             CCCCchhHhhccccccCCCCCCCceeEEcCCccccChhHHHHHHHHHHHHh
Q 030117           85 DFLETPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQ  135 (182)
Q Consensus        85 ~~~e~~~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI~~DE~~E  135 (182)
                      ...++.+||++|++|+|+|.+++||||||||+||||.|||++||++||++|
T Consensus         8 ~~~~~~~FL~~C~~C~k~L~~~~DiymYrGd~aFCS~ECR~~qi~~de~~E   58 (58)
T PF04570_consen    8 SPFPSEHFLSFCYLCKKKLDPGKDIYMYRGDKAFCSEECRSQQILMDEEKE   58 (58)
T ss_pred             CCCCcHHHHHHHHccCCCCCCCCCeeeeccccccccHHHHHHHHHHHHhcC
Confidence            345788999999999999999999999999999999999999999999986

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=95.15  E-value=0.023  Score=40.36  Aligned_cols=29  Identities=31%  Similarity=0.918  Sum_probs=23.4

Q ss_pred             hccccccCCCCCCCceeEEcCCccccChhHHHHHHHHH
Q 030117           94 RTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQD  131 (182)
Q Consensus        94 ~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI~~D  131 (182)
                      +.|-.|.+.+.+         |..|||.+||+.....-
T Consensus         4 kHC~~CG~~Ip~---------~~~fCS~~C~~~~~k~q   32 (59)
T PF09889_consen    4 KHCPVCGKPIPP---------DESFCSPKCREEYRKRQ   32 (59)
T ss_pred             CcCCcCCCcCCc---------chhhhCHHHHHHHHHHH
Confidence            469999999964         58999999998776543

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=94.56  E-value=0.019  Score=38.49  Aligned_cols=32  Identities=34%  Similarity=0.760  Sum_probs=25.4

Q ss_pred             hHhhccccccCCCCCCCceeEEcCCccccChhHHHHHH
Q 030117           91 HFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQM  128 (182)
Q Consensus        91 ~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI  128 (182)
                      .|+.+|-.|-|.+....|      +..+||++||..-.
T Consensus         4 ~F~~yC~~Cdk~~~~~~~------~~lYCSe~Cr~~D~   35 (43)
T PF12855_consen    4 AFNDYCIVCDKQIDPPDD------GSLYCSEECRLKDQ   35 (43)
T ss_pred             hhhhHHHHhhccccCCCC------CccccCHHHHhHhh
Confidence            799999999999955333      46679999997643

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.25  E-value=0.031  Score=35.20  Aligned_cols=34  Identities=29%  Similarity=0.709  Sum_probs=22.0

Q ss_pred             hhccccccCCCCCCCc--eeEEcCC-ccccChhHHHH
Q 030117           93 LRTCGLCKRRLVPGRD--IYMYRGD-SAFCSLECRQQ  126 (182)
Q Consensus        93 L~~C~lCkK~L~~gkD--IYMYRGe-~AFCS~ECR~q  126 (182)
                      ...|..|++.+....+  +..|.|. .-|||..|+..
T Consensus         6 ~~~C~~C~~~~~~~~~~~~~~~~g~~~~FCS~~C~~~   42 (43)
T PF06467_consen    6 MKTCSYCKKYIPNKPTMIEVQYDGKMKQFCSQSCLSS   42 (43)
T ss_dssp             CEE-TTT--EEECCC----EE-TTTTSCCSSHHHHHH
T ss_pred             CCcCcccCCcccCCCccccccccCcccChhCHHHHhh
Confidence            3579999999955555  6777765 78999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.

>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

Probab=91.47  E-value=0.16  Score=37.20  Aligned_cols=32  Identities=38%  Similarity=0.986  Sum_probs=28.3

Q ss_pred             hccccccCCCCCCCceeEEcCCc---cccChhHHH
Q 030117           94 RTCGLCKRRLVPGRDIYMYRGDS---AFCSLECRQ  125 (182)
Q Consensus        94 ~~C~lCkK~L~~gkDIYMYRGe~---AFCS~ECR~  125 (182)
                      ..|++|.+.|.||.-|+--|.|.   -|||..|+.
T Consensus         4 ~~CsFcG~~I~PGtG~m~Vr~Dg~v~~FcssKc~k   38 (66)
T COG2075           4 RVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEK   38 (66)
T ss_pred             eEecCcCCccCCCceEEEEecCCeEEEEechhHHH
Confidence            46999999999999988878885   499999998

>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]

Probab=90.28  E-value=0.26  Score=35.90  Aligned_cols=32  Identities=34%  Similarity=0.808  Sum_probs=24.4

Q ss_pred             hccccccCCCCCCCceeEEcCCccccChhHHHHHHHHHHHHhh
Q 030117           94 RTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQK  136 (182)
Q Consensus        94 ~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI~~DE~~Ek  136 (182)
                      +.|--|.|.|.+|         .-|||+||+  +|+..|++-+
T Consensus         9 ~HC~VCg~aIp~d---------e~~CSe~C~--eil~ker~R~   40 (64)
T COG4068           9 RHCVVCGKAIPPD---------EQVCSEECG--EILNKERKRQ   40 (64)
T ss_pred             ccccccCCcCCCc---------cchHHHHHH--HHHHHHHHHH
Confidence            4588999999754         469999997  5777776644

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=81.41  E-value=0.97  Score=32.63  Aligned_cols=37  Identities=22%  Similarity=0.501  Sum_probs=25.4

Q ss_pred             hhccccccCCCCCCCceeEEcCCccccChhHHHHHHHHHHHHh
Q 030117           93 LRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQ  135 (182)
Q Consensus        93 L~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI~~DE~~E  135 (182)
                      ...|--|+|... +..-.-|   .+|||..|+  .|.+-++..
T Consensus         6 ~v~CP~C~k~~~-w~~~~~~---rPFCS~RCk--~IDLg~W~~   42 (62)
T PRK00418          6 TVNCPTCGKPVE-WGEISPF---RPFCSKRCQ--LIDLGEWAA   42 (62)
T ss_pred             cccCCCCCCccc-ccCCCCc---CCcccHHHH--hhhHHHHHc
Confidence            457999999974 2222334   489999987  577777653

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=81.25  E-value=0.51  Score=33.41  Aligned_cols=33  Identities=18%  Similarity=0.415  Sum_probs=17.7

Q ss_pred             ccccccCCCCCCCceeEEcCCccccChhHHHHHHHHHHH
Q 030117           95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDER  133 (182)
Q Consensus        95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI~~DE~  133 (182)
                      .|--|+|.... .+-.=   -.+|||..||  .|.+-.+
T Consensus         4 ~CP~C~k~~~~-~~~n~---~rPFCS~RCk--~iDLg~W   36 (57)
T PF03884_consen    4 KCPICGKPVEW-SPENP---FRPFCSERCK--LIDLGRW   36 (57)
T ss_dssp             E-TTT--EEE--SSSSS-----SSSSHHHH--HHHHS-S
T ss_pred             cCCCCCCeecc-cCCCC---cCCcccHhhc--ccCHHHH
Confidence            58889998843 22222   3699999998  4655444

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	93.45
2l8e_A	49	Polyhomeotic-like protein 1; DNA binding protein;	89.11
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	87.89

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=93.45  E-value=0.046  Score=38.65  Aligned_cols=35  Identities=34%  Similarity=0.681  Sum_probs=30.5

Q ss_pred             hHhhccccccCCCCCCCceeEEcCC-ccccChhHHH
Q 030117           91 HFLRTCGLCKRRLVPGRDIYMYRGD-SAFCSLECRQ  125 (182)
Q Consensus        91 ~FL~~C~lCkK~L~~gkDIYMYRGe-~AFCS~ECR~  125 (182)
                      .+-..|..|||.|..|+--|-..|+ .-|||..|-.
T Consensus        18 ~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~   53 (62)
T 2das_A           18 PAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS   53 (62)
T ss_dssp             CSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred             ccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence            3567899999999999999988898 7899999954

>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}

Probab=89.11  E-value=0.088  Score=35.12  Aligned_cols=31  Identities=29%  Similarity=0.794  Sum_probs=24.4

Q ss_pred             hhccccccCCCCCCCceeEEcCCccccChhHHHHH
Q 030117           93 LRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQ  127 (182)
Q Consensus        93 L~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qq  127 (182)
                      +..|-.|.+.|.+..    ++-.+-|||..||...
T Consensus        18 ~~~C~~CG~~i~~~~----~~r~krFCS~sCR~~y   48 (49)
T 2l8e_A           18 LLKCEYCGKYAPAEQ----FRGSKRFCSMTCAKRY   48 (49)
T ss_dssp             EEECTTTCCEEEGGG----CTTTSSSCSHHHHHHH
T ss_pred             CCcChhccCcccccc----CCCCCccCCHHHHhhh
Confidence            457999999996443    3778999999999753

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=87.89  E-value=0.29  Score=31.84  Aligned_cols=29  Identities=34%  Similarity=0.894  Sum_probs=23.1

Q ss_pred             ccccccCCCCCCCceeEEcCCccccChhHHH
Q 030117           95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ  125 (182)
Q Consensus        95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~  125 (182)
                      .|..|++.|. + ..|+-+..+.||+.+|-.
T Consensus        34 ~C~~C~~~L~-~-~~f~~~~g~~yC~~~C~~   62 (65)
T 2iyb_E           34 LCSCCSKCLI-G-QKFMPVEGMVFCSVECKK   62 (65)
T ss_dssp             BCTTTCCBCT-T-SCCEEETTEEESSHHHHH
T ss_pred             ECCCCCCcCC-C-CceEEECCEEecCHHHhh
Confidence            6889999995 3 347777789999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d2dasa1	49	Zinc finger MYM-type protein 5 {Human (Homo sapien	91.81
d1rutx4	33	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	87.38
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	86.61
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	83.42

>d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: TRASH domain
domain: Zinc finger MYM-type protein 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.049  Score=35.32  Aligned_cols=38  Identities=34%  Similarity=0.646  Sum_probs=31.3

Q ss_pred             chhHhhccccccCCCCCCCceeEEcCC-ccccChhHHHH
Q 030117           89 TPHFLRTCGLCKRRLVPGRDIYMYRGD-SAFCSLECRQQ  126 (182)
Q Consensus        89 ~~~FL~~C~lCkK~L~~gkDIYMYRGe-~AFCS~ECR~q  126 (182)
                      +..---+|..|||.|..|.-.|--+|- .-|||--|-..
T Consensus         9 ~~a~~v~Ca~Ckk~lqKGQTAyqrkGs~~LFCSt~Cl~~   47 (49)
T d2dasa1           9 TKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSS   47 (49)
T ss_dssp             SSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHH
T ss_pred             CCceEeEecccchHHhccchHHhhCCCcceeEcchhhcc
Confidence            334456899999999999999998887 67999999643

>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: LIM only 4 (Lmo4)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.38  E-value=0.17  Score=30.24  Aligned_cols=26  Identities=50%  Similarity=1.072  Sum_probs=22.7

Q ss_pred             ccccccCCCCCCCceeEEcCCccccCh
Q 030117           95 TCGLCKRRLVPGRDIYMYRGDSAFCSL  121 (182)
Q Consensus        95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~  121 (182)
                      .|..|+.+|.|| |.|-|---+-||-.
T Consensus         1 tC~tC~n~LVPG-DRFHyvNG~lfCE~   26 (33)
T d1rutx4           1 TCSTCRNRLVPG-DRFHYINGSLFCEH   26 (33)
T ss_dssp             BCTTTCCBCCTT-CEEEEETTEEEEGG
T ss_pred             CcccccccccCC-ceeEEecCEEEEec
Confidence            499999999988 88999888999954

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.61  E-value=0.18  Score=30.07  Aligned_cols=25  Identities=24%  Similarity=0.773  Sum_probs=21.1

Q ss_pred             cccccCCCCCCCceeEEcCCccccChhH
Q 030117           96 CGLCKRRLVPGRDIYMYRGDSAFCSLEC  123 (182)
Q Consensus        96 C~lCkK~L~~gkDIYMYRGe~AFCS~EC  123 (182)
                      |-.|++.|.  .+.|.-|+|++||- +|
T Consensus         2 Ct~Ck~~La--GqrFTSrde~pYC~-~C   26 (32)
T d2cuqa1           2 CTGCQTPLA--GQQFTSRDEDPYCV-AC   26 (32)
T ss_dssp             CSSSCCBCT--TCCEEECSSSEEEH-HH
T ss_pred             ccccCcccc--CCccccCCCCccHH-HH
Confidence            889999996  46799999999994 44

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.42  E-value=0.3  Score=29.02  Aligned_cols=24  Identities=29%  Similarity=0.750  Sum_probs=20.7

Q ss_pred             ccccccCCCCCCCceeEEcCCccccC
Q 030117           95 TCGLCKRRLVPGRDIYMYRGDSAFCS  120 (182)
Q Consensus        95 ~C~lCkK~L~~gkDIYMYRGe~AFCS  120 (182)
                      .|..|++.|.  ...|+-|-+++||-
T Consensus         1 ~C~~C~~~L~--GQry~~rd~~PyC~   24 (32)
T d2d8za2           1 VCTACRKQLS--GQRFTARDDFAYCL   24 (32)
T ss_dssp             BCSSSCCBCT--TSCCEESSSSEECH
T ss_pred             CcccCCcccc--CceeeecCCCeehH
Confidence            3899999995  56799999999994