Citrus Sinensis ID: 030121

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKNDKE
Secondary Structure (PSIPRED)
ccccccccEEEEcccccHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEEEEccccccccccccccEEEEEEEccEEEEEcccccccEEcccHHHHHHHHHHHHHcccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccEEcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHcccccccccccccccccccccHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEEEcccccccccccccccEEEEEEEccEEEEcccccccccccccHHHHHHHHHHHHHcccEEEEEEcccc
Coil and Loop (DISEMBL)
masenckiyhERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVldypnkqtwtplsvvfkphhnaltgnyDINVLIAALEgrgksvvwhdrrneasaidldggenclMGIVINVPVTRYAGLWKSRHWVALRKIDGvwynldsdfhapqcfkdsKEVREFLDYIIGLGGEVLLVKNDKE
Flexible Loop (DISEMBL)
masenckiYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEAsaidldggenCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGlggevllvkndke
Low Complexity Region (SEG)
MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKNDKE
Disordered region (IsUnstruct)
*****CKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLV*****
Disordered Region (DISOPRED)
*****CK**HERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAE***********************NALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKND**
Disordered Region (DISEMBL)
MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKNDKE
Disordered Region (DISPRO)
*****CKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKN***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKNDKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
O82391	360	Josephin-like protein OS=	yes	no	0.928	0.469	0.688	4e-66
Q8TAC2	188	Josephin-2 OS=Homo sapien	yes	no	0.846	0.819	0.414	7e-30
Q9CR30	188	Josephin-2 OS=Mus musculu	yes	no	0.851	0.824	0.401	3e-29
Q5BJY4	202	Josephin-1 OS=Rattus norv	no	no	0.857	0.772	0.382	3e-27
Q9DBJ6	202	Josephin-1 OS=Mus musculu	no	no	0.857	0.772	0.376	6e-27
Q5EAE5	202	Josephin-1 OS=Bos taurus	no	no	0.857	0.772	0.376	9e-27
Q5R739	202	Josephin-1 OS=Pongo abeli	yes	no	0.857	0.772	0.370	3e-26
Q15040	202	Josephin-1 OS=Homo sapien	no	no	0.857	0.772	0.370	3e-26
Q9W422	221	Josephin-like protein OS=	yes	no	0.873	0.719	0.338	4e-24
Q9M391	280	Ataxin-3 homolog OS=Arabi	no	no	0.807	0.525	0.265	2e-07

>sp|O82391|JOSL_ARATH Josephin-like protein OS=Arabidopsis thaliana GN=At2g29640 PE=2 SV=1

 Score =  250 bits (638), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 117/170 (68%), Positives = 135/170 (79%), Gaps = 1/170 (0%)

Query: 1   MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSV 60
           MA    KIYHERQ+LQFCLLH LNNLFQ + AFT+ SLN IAEKL  + PNK+TWTPLS 
Sbjct: 1   MADSESKIYHERQRLQFCLLHCLNNLFQDKDAFTKESLNSIAEKLETNDPNKETWTPLSF 60

Query: 61  VFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVT 120
           V KPHHN +TGNYD+NV+I ALEG+GKSVVWHD+R  AS+IDLD  +  LMGIV+NVPV 
Sbjct: 61  VLKPHHNTITGNYDVNVMITALEGKGKSVVWHDKRIGASSIDLDDADT-LMGIVLNVPVK 119

Query: 121 RYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGL 170
           RY GLW+SRHWV +RKI+GVWYNLDSD   PQ F+D  EVR FLD  + L
Sbjct: 120 RYGGLWRSRHWVVVRKINGVWYNLDSDLVVPQLFRDDDEVRGFLDQNLSL 169

May act as a deubiquitinating enzyme.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q8TAC2|JOS2_HUMAN Josephin-2 OS=Homo sapiens GN=JOSD2 PE=1 SV=1

 Score =  130 bits (326), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 22/176 (12%)

Query: 8   IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
           +YHERQ+L+ C +H+LNN+ QQ+  F++ + +EI ++L  D               PH +
Sbjct: 14  VYHERQRLELCAVHALNNVLQQQ-LFSQEAADEICKRLAPDS-----------RLNPHRS 61

Query: 68  AL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
            L TGNYD+NV++AAL+G G + VW DRR   S + L      ++G+++N+P     GL 
Sbjct: 62  LLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQ----VLGLILNLPSPVSLGLL 117

Query: 127 ----KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLG-GEVLLV 177
               + RHWVALR++DGV+YNLDS   AP+   D   VR FL   +  G  EVLLV
Sbjct: 118 SLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQGLCEVLLV 173

Cleaves 'Lys-63'-linked poly-ubiquitin chains, and with lesser efficiency 'Lys-48'-linked poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9CR30|JOS2_MOUSE Josephin-2 OS=Mus musculus GN=Josd2 PE=2 SV=1

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 105/177 (59%), Gaps = 22/177 (12%)

Query: 7   KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
            +YHERQ+L+ C +H+LNN+ Q++  F++ + +EI ++L  D               PH 
Sbjct: 13  SVYHERQRLELCAVHALNNVLQEQ-LFSQEAADEICKRLAPDS-----------RLNPHR 60

Query: 67  NAL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGL 125
           + L TGNYD+NV++AAL+G G + VW DRR   S + L      ++G+++N+P     GL
Sbjct: 61  SLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQ----VLGLILNLPSPVSLGL 116

Query: 126 W----KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLG-GEVLLV 177
                + RHWVALR++DG++YNLDS   AP+   D   VR FL   +  G  EVLLV
Sbjct: 117 LSLPLRRRHWVALRQVDGIYYNLDSKLRAPEALGDEDGVRTFLAAALAQGLCEVLLV 173

Cleaves 'Lys-63'-linked poly-ubiquitin chains, and with lesser efficiency 'Lys-48'-linked poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5BJY4|JOS1_RAT Josephin-1 OS=Rattus norvegicus GN=Josd1 PE=2 SV=1

 Score =  120 bits (302), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 102/178 (57%), Gaps = 22/178 (12%)

Query: 7   KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
           +IYHE+Q+ + C LH+LNN+FQ   AFTR +L EI ++L    PN         V  PH 
Sbjct: 25  QIYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLS---PN--------TVVTPHK 73

Query: 67  NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
            ++   GNYD+NV++AAL+ +G   VW D+R +   I L      +MG ++N+P +   G
Sbjct: 74  KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALAN----VMGFIMNLPSSLCWG 129

Query: 125 ----LWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDY-IIGLGGEVLLV 177
                 K +HW+ +R++ G +YNLDS    P+      E+R+FL Y + G   E+LLV
Sbjct: 130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKYHLRGKNCELLLV 187

Has low protease activity towards poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9DBJ6|JOS1_MOUSE Josephin-1 OS=Mus musculus GN=Josd1 PE=2 SV=1

 Score =  120 bits (300), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 102/178 (57%), Gaps = 22/178 (12%)

Query: 7   KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
           +IYHE+Q+ + C LH+LNN+FQ   AFTR +L EI ++L    PN         +  PH 
Sbjct: 25  QIYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLS---PN--------TMVTPHK 73

Query: 67  NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
            ++   GNYD+NV++AAL+ +G   VW D+R +   I L      +MG ++N+P +   G
Sbjct: 74  KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTN----VMGFIMNLPSSLCWG 129

Query: 125 ----LWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDY-IIGLGGEVLLV 177
                 K +HW+ +R++ G +YNLDS    P+      E+R+FL Y + G   E+LLV
Sbjct: 130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKYHLRGKNCELLLV 187

Has low protease activity towards poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5EAE5|JOS1_BOVIN Josephin-1 OS=Bos taurus GN=JOSD1 PE=2 SV=1

 Score =  119 bits (299), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 103/178 (57%), Gaps = 22/178 (12%)

Query: 7   KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
           +IYHE+Q+ + C LH+LNN+FQ   AFTR +L EI ++L    PN         +  PH 
Sbjct: 25  QIYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRL---SPN--------TMVTPHK 73

Query: 67  NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
            ++   GNYD+NV++AAL+ +G   VW D+R +  AI L      +MG ++N+P +   G
Sbjct: 74  KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGAIALTN----VMGFIMNLPSSLCWG 129

Query: 125 ----LWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLD-YIIGLGGEVLLV 177
                 K +HW+ +R++ G +YNLDS    P+      E+R+FL  ++ G   E+LLV
Sbjct: 130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGKSELRKFLKHHLRGKNCELLLV 187

Has low protease activity towards poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5R739|JOS1_PONAB Josephin-1 OS=Pongo abelii GN=JOSD1 PE=2 SV=1

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 102/178 (57%), Gaps = 22/178 (12%)

Query: 7   KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
           +IYHE+Q+ + C LH+LNN+FQ   AFTR +L EI ++L    PN         +  PH 
Sbjct: 25  QIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRL---SPN--------TMVTPHK 73

Query: 67  NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
            ++   GNYD+NV++AAL+ +G   VW D+R +   I L      +MG ++N+P +   G
Sbjct: 74  KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTN----VMGFIMNLPSSLCWG 129

Query: 125 ----LWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLD-YIIGLGGEVLLV 177
                 K +HW+ +R++ G +YNLDS    P+      E+R+FL  ++ G   E+LLV
Sbjct: 130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLV 187

Has low protease activity towards poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q15040|JOS1_HUMAN Josephin-1 OS=Homo sapiens GN=JOSD1 PE=1 SV=1

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 102/178 (57%), Gaps = 22/178 (12%)

Query: 7   KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
           +IYHE+Q+ + C LH+LNN+FQ   AFTR +L EI ++L    PN         +  PH 
Sbjct: 25  QIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRL---SPN--------TMVTPHK 73

Query: 67  NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
            ++   GNYD+NV++AAL+ +G   VW D+R +   I L      +MG ++N+P +   G
Sbjct: 74  KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTN----VMGFIMNLPSSLCWG 129

Query: 125 ----LWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLD-YIIGLGGEVLLV 177
                 K +HW+ +R++ G +YNLDS    P+      E+R+FL  ++ G   E+LLV
Sbjct: 130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLV 187

Has low protease activity towards poly-ubiquitin chains (in vitro). May act as a deubiquitinating enzyme.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9W422|JOSL_DROME Josephin-like protein OS=Drosophila melanogaster GN=CG3781 PE=2 SV=3

 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 96/180 (53%), Gaps = 21/180 (11%)

Query: 8   IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
           IYHERQ    C LH+LNNLFQ    F+++ L++    L       + W        PH +
Sbjct: 39  IYHERQTRHLCGLHALNNLFQGPDMFSKSELDDYCTTLT-----PRNW------LNPHRS 87

Query: 68  ALT-GNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
            +  GNYD+NV++ AL+ R    VW DRR +   ++L    + + G ++NVP     G +
Sbjct: 88  WIGWGNYDVNVIMYALQQRNCEAVWFDRRRDPHCLNL----SVIFGFILNVPAQMSLGYY 143

Query: 127 -----KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKNDK 181
                  RHW+ALR+++G +YNLDS    P+C    ++  EFL   + +  E+ LV +++
Sbjct: 144 IPLPFHMRHWLALRRLNGSYYNLDSKLREPKCLGTEQQFLEFLATQLQMDHELFLVLDEE 203

May act as a deubiquitinating enzyme.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 45/192 (23%)

Query: 8   IYHERQKLQFCLLHSLNNLFQQEGAF--------TRASLNEIAEKLVLDYPNKQTWTPLS 59
           +YHE Q+   C +H +N + Q  G F          A L+    +++L+      + P  
Sbjct: 10  LYHEVQESNLCAVHCVNTVLQ--GPFFSEFDLAAVAADLDGKERQVMLEGAAVGGFAPGD 67

Query: 60  VVFKPHHN-ALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVP 118
            + +  HN +L G++ I VL  ALE      VW                  L  I +N P
Sbjct: 68  FLAEESHNVSLGGDFSIQVLQKALE------VWD-----------------LQVIPLNCP 104

Query: 119 VTRYAGLWKS----------RHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYII 168
               A +              HW  +RK++G WYN DS   APQ       +  FLD + 
Sbjct: 105 DAEPAQIDPELESAFICHLHDHWFCIRKVNGEWYNFDSLLAAPQHLSKFY-LSAFLDSLK 163

Query: 169 GLGGEVLLVKND 180
           G G  + +VK +
Sbjct: 164 GAGWSIFIVKGN 175

Interacts with key regulators of transcription and represses transcription. Acts as a histone-binding protein that regulates transcription. Acts as a deubiquitinating enzyme.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
356498937	354	PREDICTED: josephin-like protein-like [G	0.994	0.511	0.701	2e-74
357490611	185	Josephin-like protein [Medicago truncatu	1.0	0.983	0.684	1e-72
255569277	187	Josephin-2, putative [Ricinus communis]	0.989	0.962	0.719	3e-72
359478568	325	PREDICTED: josephin-like protein-like [V	0.994	0.556	0.679	6e-72
297745938	184	unnamed protein product [Vitis vinifera]	0.994	0.983	0.685	2e-71
449496599	184	PREDICTED: josephin-like protein-like [C	0.994	0.983	0.693	7e-71
449450796	184	PREDICTED: josephin-like protein-like [C	0.994	0.983	0.693	3e-70
356551853	346	PREDICTED: josephin-like protein-like [G	0.950	0.5	0.693	1e-68
297822683	385	hypothetical protein ARALYDRAFT_481877 [	0.928	0.438	0.729	2e-68
224059316	196	predicted protein [Populus trichocarpa]	0.961	0.892	0.641	6e-66

>gi|356498937|ref|XP_003518302.1| PREDICTED: josephin-like protein-like [Glycine max]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 127/181 (70%), Positives = 154/181 (85%)

Query: 1   MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSV 60
           MA+EN ++YHERQ+LQFCL+H+LN+LFQQ+ AFTRA LN I+E+L L+  N +TWTPLSV
Sbjct: 1   MATENSQVYHERQRLQFCLVHALNSLFQQKDAFTRAKLNAISERLTLEDSNSETWTPLSV 60

Query: 61  VFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVT 120
           +FKPHHN LTGNYDINVLIAALE +GK+VVWHDRR  AS+ID+D  E+ LMG VINV VT
Sbjct: 61  LFKPHHNVLTGNYDINVLIAALEEKGKTVVWHDRRKGASSIDVDAPEDVLMGFVINVAVT 120

Query: 121 RYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKND 180
           R+AG+W+SRHW+ALRKIDGVWYNLDSD  APQ F D+ +VREFLD  +  GGEVL+V N+
Sbjct: 121 RFAGIWRSRHWIALRKIDGVWYNLDSDLTAPQPFFDTDKVREFLDSTLAHGGEVLIVMNE 180

Query: 181 K 181
           K
Sbjct: 181 K 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490611|ref|XP_003615593.1| Josephin-like protein [Medicago truncatula] gi|355516928|gb|AES98551.1| Josephin-like protein [Medicago truncatula]

 Score =  277 bits (708), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 126/184 (68%), Positives = 153/184 (83%), Gaps = 2/184 (1%)

Query: 1   MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLD--YPNKQTWTPL 58
           M++E   +YHERQ+LQFCL+H+LN+LFQQ+ AFTRA+LN I+EKL LD  + N+ +WTPL
Sbjct: 1   MSTEKSHVYHERQRLQFCLIHTLNSLFQQKDAFTRANLNAISEKLALDESFNNESSWTPL 60

Query: 59  SVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVP 118
           S+ FKPHHNALTGNYDINVL AALE +GKSVVWHDRR   S++DLD  E+ LMG+VIN+ 
Sbjct: 61  SIFFKPHHNALTGNYDINVLTAALEEKGKSVVWHDRRKGGSSVDLDASEDVLMGVVINIA 120

Query: 119 VTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVK 178
           V R+AG+WKSRHW+ALRKIDGVWYNLDSD  AP+ F+D+ EVREFLD  I  GGEVLLV 
Sbjct: 121 VKRFAGIWKSRHWIALRKIDGVWYNLDSDLSAPKSFRDTDEVREFLDSSIVRGGEVLLVM 180

Query: 179 NDKE 182
           N K+
Sbjct: 181 NQKQ 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569277|ref|XP_002525606.1| Josephin-2, putative [Ricinus communis] gi|223535042|gb|EEF36724.1| Josephin-2, putative [Ricinus communis]

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 131/182 (71%), Positives = 153/182 (84%), Gaps = 2/182 (1%)

Query: 1   MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSV 60
           MAS + ++YHERQ+LQFCLLH+LNNLFQQ+  FTR  L+ IAEKLVL+ P+KQ WTPLS+
Sbjct: 8   MASNDPRVYHERQRLQFCLLHALNNLFQQKDEFTRPILDAIAEKLVLECPDKQNWTPLSI 67

Query: 61  VFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVT 120
           VFKPHHN+LTGNYDINVLI+ALE +GK VVWHDRRN AS+IDLD  ++ + GIV+NV V 
Sbjct: 68  VFKPHHNSLTGNYDINVLISALEDKGKIVVWHDRRNGASSIDLD--DDNMFGIVLNVHVR 125

Query: 121 RYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKND 180
           RYAGLWKSRHWVALRKI G+WYNLDSD H P  F+D  EVR FLDY+IG GGE+LLV N 
Sbjct: 126 RYAGLWKSRHWVALRKISGIWYNLDSDLHEPLAFQDVDEVRGFLDYVIGQGGEILLVMNK 185

Query: 181 KE 182
           KE
Sbjct: 186 KE 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478568|ref|XP_002279704.2| PREDICTED: josephin-like protein-like [Vitis vinifera]

 Score =  275 bits (703), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 123/181 (67%), Positives = 148/181 (81%)

Query: 2   ASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVV 61
           A +  +IYHERQ+LQ+CLLH+LNNLFQ++  FTRA LN IAEKL LD PNK+TWTPLSV+
Sbjct: 4   AEDTTQIYHERQRLQYCLLHALNNLFQEKDIFTRAKLNAIAEKLSLDDPNKETWTPLSVL 63

Query: 62  FKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTR 121
           FKPHHN +TGNYDINVL AALEG+GKS +WHDRRN AS+IDLDG E+ LMGI++N+ V R
Sbjct: 64  FKPHHNMITGNYDINVLTAALEGKGKSAIWHDRRNGASSIDLDGAEDTLMGIMLNISVRR 123

Query: 122 YAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKNDK 181
           + G+W  RHW  LRK+ GVWYNLDSD  +PQ FKD +EV++FLD IIG GGE+ LV N K
Sbjct: 124 FGGIWNGRHWFTLRKMGGVWYNLDSDLKSPQSFKDVEEVKKFLDCIIGGGGEIFLVMNCK 183

Query: 182 E 182
            
Sbjct: 184 R 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745938|emb|CBI15994.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/181 (68%), Positives = 149/181 (82%)

Query: 2   ASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVV 61
           A +  +IYHERQ+LQ+CLLH+LNNLFQ++  FTRA LN IAEKL LD PNK+TWTPLSV+
Sbjct: 4   AEDTTQIYHERQRLQYCLLHALNNLFQEKDIFTRAKLNAIAEKLSLDDPNKETWTPLSVL 63

Query: 62  FKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTR 121
           FKPHHN +TGNYDINVL AALEG+GKS +WHDRRN AS+IDLDG E+ LMGI++N+ V R
Sbjct: 64  FKPHHNMITGNYDINVLTAALEGKGKSAIWHDRRNGASSIDLDGAEDTLMGIMLNISVRR 123

Query: 122 YAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKNDK 181
           + G+W  RHW  LRK+ GVWYNLDSD  +PQ FKD +EV++FLD IIG GGE+ LV N K
Sbjct: 124 FGGIWNGRHWFTLRKMGGVWYNLDSDLKSPQSFKDVEEVKKFLDCIIGGGGEIFLVMNCK 183

Query: 182 E 182
           E
Sbjct: 184 E 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496599|ref|XP_004160175.1| PREDICTED: josephin-like protein-like [Cucumis sativus]

 Score =  271 bits (693), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 127/183 (69%), Positives = 154/183 (84%), Gaps = 2/183 (1%)

Query: 1   MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSV 60
           MA E+C +YHERQKLQ CLLH+LNNLFQ++ AFTRA+LN IAEKLV D PN++TWTPLS+
Sbjct: 1   MAREDCGVYHERQKLQLCLLHALNNLFQEKDAFTRANLNAIAEKLVRDVPNQETWTPLSI 60

Query: 61  VFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENC--LMGIVINVP 118
           VFKPHHN +TGNYDINVLI+ALE +GKSVVWHD RN A +IDLDG ++   LMGIV+NV 
Sbjct: 61  VFKPHHNTVTGNYDINVLISALEEKGKSVVWHDHRNGAFSIDLDGPDHTCKLMGIVLNVS 120

Query: 119 VTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVK 178
           V R+ G+WKSRHWVALRKI+G+WYNLDSD   P  FKD+ E+R+FLD++I   GE+LLV 
Sbjct: 121 VRRFGGIWKSRHWVALRKINGLWYNLDSDLPDPHPFKDTDELRQFLDHVINDNGEILLVM 180

Query: 179 NDK 181
           ND+
Sbjct: 181 NDR 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450796|ref|XP_004143148.1| PREDICTED: josephin-like protein-like [Cucumis sativus]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/183 (69%), Positives = 153/183 (83%), Gaps = 2/183 (1%)

Query: 1   MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSV 60
           MA E+  +YHERQKLQ CLLH+LNNLFQ++ AFTRA+LN IAEKLV D PN++TWTPLS+
Sbjct: 1   MAREDFGVYHERQKLQLCLLHALNNLFQEKDAFTRANLNAIAEKLVRDVPNQETWTPLSI 60

Query: 61  VFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENC--LMGIVINVP 118
           VFKPHHN +TGNYDINVLI+ALE +GKSVVWHD RN A +IDLDG ++   LMGIV+NV 
Sbjct: 61  VFKPHHNTVTGNYDINVLISALEEKGKSVVWHDHRNGAFSIDLDGPDHTCKLMGIVLNVS 120

Query: 119 VTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVK 178
           V R+ G+WKSRHWVALRKIDG+WYNLDSD   P  FKD+ E+R+FLD++I   GE+LLV 
Sbjct: 121 VRRFGGIWKSRHWVALRKIDGLWYNLDSDLPDPHPFKDTDELRQFLDHVINDNGEILLVM 180

Query: 179 NDK 181
           ND+
Sbjct: 181 NDR 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551853|ref|XP_003544287.1| PREDICTED: josephin-like protein-like [Glycine max]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/173 (69%), Positives = 146/173 (84%)

Query: 1   MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSV 60
           MA+EN ++YHERQ+LQFCL+HSLN+LFQQ+ AFTRA LN I+E+L L+  N +TWTPLSV
Sbjct: 1   MATENSQVYHERQRLQFCLVHSLNSLFQQKDAFTRAKLNAISERLALEDSNSETWTPLSV 60

Query: 61  VFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVT 120
           +FKPHHN LTGNYDINVLIAALE +GKSV+WHD R  AS+ID+D  E+ LMG+VINV + 
Sbjct: 61  LFKPHHNVLTGNYDINVLIAALEEKGKSVLWHDHRKGASSIDVDAPEDVLMGVVINVALK 120

Query: 121 RYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGE 173
           R+AG+W+SRHW+ALRKIDGVWYNLDSD  APQ F D+ +VREFLD  +  GGE
Sbjct: 121 RFAGIWRSRHWIALRKIDGVWYNLDSDLAAPQPFLDTYKVREFLDSTLVHGGE 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822683|ref|XP_002879224.1| hypothetical protein ARALYDRAFT_481877 [Arabidopsis lyrata subsp. lyrata] gi|297325063|gb|EFH55483.1| hypothetical protein ARALYDRAFT_481877 [Arabidopsis lyrata subsp. lyrata]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 141/170 (82%), Gaps = 1/170 (0%)

Query: 7   KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
           KIYHERQ+LQFCLLHSLNNLFQ++ AFT+ SLN IAEKLV D PNK+TWTPLS + KPHH
Sbjct: 3   KIYHERQRLQFCLLHSLNNLFQEKDAFTKESLNSIAEKLVDDDPNKETWTPLSFLLKPHH 62

Query: 67  NALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
           N LTGNYD+NV+I ALEG+GKSVVWHD+R  AS IDLD  +  LMGIV+NVPV RY GLW
Sbjct: 63  NTLTGNYDVNVMIKALEGKGKSVVWHDKRCGASLIDLDDADT-LMGIVLNVPVKRYGGLW 121

Query: 127 KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLL 176
           +SRHWV +RKI+GVWYNLDSD   PQ F+D  EVR FLD  + LGGEVLL
Sbjct: 122 RSRHWVVVRKINGVWYNLDSDLVVPQLFRDGDEVRGFLDQNLSLGGEVLL 171

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059316|ref|XP_002299822.1| predicted protein [Populus trichocarpa] gi|222847080|gb|EEE84627.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (651), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 125/195 (64%), Positives = 146/195 (74%), Gaps = 20/195 (10%)

Query: 3   SENCKIYHERQKLQFCLLHSLNNLFQ--------------------QEGAFTRASLNEIA 42
           SE  +IYHE+QKLQFCLLH+LNNLFQ                    Q+ AFTRA LNEI+
Sbjct: 1   SEKTEIYHEKQKLQFCLLHALNNLFQVLKNTNHPPLFLFFFSFIFQQQEAFTRARLNEIS 60

Query: 43  EKLVLDYPNKQTWTPLSVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAID 102
            KLVLD P+K+TWTPLS+VFKPHHNA TGNYDINVLIAALE + K+VVWHDRRN AS ID
Sbjct: 61  GKLVLDDPSKKTWTPLSIVFKPHHNAFTGNYDINVLIAALEEKDKTVVWHDRRNAASTID 120

Query: 103 LDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVRE 162
           LDG ++ L GIV+NVP  RYA LWK RHW+ +RKI GVWYNLDSD   P  F+ ++EVR 
Sbjct: 121 LDGADDSLFGIVLNVPARRYALLWKGRHWITMRKIGGVWYNLDSDLPKPMPFEGTREVRG 180

Query: 163 FLDYIIGLGGEVLLV 177
           +LDY++  GGEVLLV
Sbjct: 181 YLDYVLSNGGEVLLV 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2060704	360	JOSL "JOSEPHIN-like protein" [	0.928	0.469	0.688	3.8e-62
UNIPROTKB|F1PYC2	208	JOSD2 "Uncharacterized protein	0.846	0.740	0.414	1.2e-28
UNIPROTKB|F1ME39	208	LOC100848343 "Uncharacterized	0.846	0.740	0.414	1.5e-28
UNIPROTKB|Q8TAC2	188	JOSD2 "Josephin-2" [Homo sapie	0.846	0.819	0.414	2.4e-28
MGI|MGI:1913374	188	Josd2 "Josephin domain contain	0.846	0.819	0.403	6.4e-28
UNIPROTKB|F1RH21	188	JOSD2 "Uncharacterized protein	0.846	0.819	0.403	1.7e-27
RGD|1307305	188	Josd2 "Josephin domain contain	0.846	0.819	0.397	4.5e-27
UNIPROTKB|E2RKB1	202	JOSD1 "Uncharacterized protein	0.857	0.772	0.382	1.5e-26
RGD|1305388	202	Josd1 "Josephin domain contain	0.857	0.772	0.382	1.9e-26
UNIPROTKB|Q5EAE5	202	JOSD1 "Josephin-1" [Bos taurus	0.857	0.772	0.376	4e-26

TAIR|locus:2060704 JOSL "JOSEPHIN-like protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 117/170 (68%), Positives = 135/170 (79%)

Query:     1 MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSV 60
             MA    KIYHERQ+LQFCLLH LNNLFQ + AFT+ SLN IAEKL  + PNK+TWTPLS 
Sbjct:     1 MADSESKIYHERQRLQFCLLHCLNNLFQDKDAFTKESLNSIAEKLETNDPNKETWTPLSF 60

Query:    61 VFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVT 120
             V KPHHN +TGNYD+NV+I ALEG+GKSVVWHD+R  AS+IDLD  +  LMGIV+NVPV 
Sbjct:    61 VLKPHHNTITGNYDVNVMITALEGKGKSVVWHDKRIGASSIDLDDADT-LMGIVLNVPVK 119

Query:   121 RYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGL 170
             RY GLW+SRHWV +RKI+GVWYNLDSD   PQ F+D  EVR FLD  + L
Sbjct:   120 RYGGLWRSRHWVVVRKINGVWYNLDSDLVVPQLFRDDDEVRGFLDQNLSL 169

GO:0005634 "nucleus" evidence=ISM

GO:0008242 "omega peptidase activity" evidence=IEA

UNIPROTKB|F1PYC2 JOSD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 73/176 (41%), Positives = 107/176 (60%)

Query:     8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
             +YHERQ+L+ C +H+LNN+ QQ+  F++ + +EI ++L    P+ +          PH +
Sbjct:    34 VYHERQRLELCAVHALNNVLQQQ-LFSQEAADEICKRLA---PDSR--------LNPHRS 81

Query:    68 AL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
              L TGNYD+NV++AAL+G G + VW DRR   S + L      ++G+++N+P     GL 
Sbjct:    82 LLGTGNYDVNVIMAALQGLGLATVWWDRRRPLSQLALSQ----VLGLILNLPSPMSLGLL 137

Query:   127 ----KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLG-GEVLLV 177
                 + RHWVALR++DGV+YNLDS   AP+   D   VR FL   +  G  EVLLV
Sbjct:   138 SLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQGLCEVLLV 193

GO:0016579 "protein deubiquitination" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

UNIPROTKB|F1ME39 LOC100848343 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 73/176 (41%), Positives = 108/176 (61%)

Query:     8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
             +YHERQ+L+ C +H+LNN+ QQ+  F++ + +EI ++L    P+ +          PH +
Sbjct:    34 VYHERQRLELCAVHALNNVLQQQ-LFSQEAADEICKRLA---PDSR--------LNPHRS 81

Query:    68 AL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
              L TGNYD+NV++AAL+G+G + VW DRR   S + L      ++G+++N+P     GL 
Sbjct:    82 LLGTGNYDVNVIMAALQGQGLAAVWWDRRRPLSQLALPR----VLGLILNLPSPVSLGLL 137

Query:   127 ----KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLG-GEVLLV 177
                 + RHWVALR++DGV+YNLDS   AP+   D   VR FL   +  G  EVLLV
Sbjct:   138 SLPLRRRHWVALRQVDGVYYNLDSKLRAPEVLGDEDGVRAFLAAALAQGLCEVLLV 193

GO:0016579 "protein deubiquitination" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

UNIPROTKB|Q8TAC2 JOSD2 "Josephin-2" [Homo sapiens (taxid:9606)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 73/176 (41%), Positives = 107/176 (60%)

Query:     8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
             +YHERQ+L+ C +H+LNN+ QQ+  F++ + +EI ++L    P+ +          PH +
Sbjct:    14 VYHERQRLELCAVHALNNVLQQQ-LFSQEAADEICKRLA---PDSR--------LNPHRS 61

Query:    68 AL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
              L TGNYD+NV++AAL+G G + VW DRR   S + L      ++G+++N+P     GL 
Sbjct:    62 LLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQ----VLGLILNLPSPVSLGLL 117

Query:   127 ----KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLG-GEVLLV 177
                 + RHWVALR++DGV+YNLDS   AP+   D   VR FL   +  G  EVLLV
Sbjct:   118 SLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQGLCEVLLV 173

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IDA

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

MGI|MGI:1913374 Josd2 "Josephin domain containing 2" [Mus musculus (taxid:10090)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 71/176 (40%), Positives = 107/176 (60%)

Query:     8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
             +YHERQ+L+ C +H+LNN+ Q++  F++ + +EI ++L    P+ +          PH +
Sbjct:    14 VYHERQRLELCAVHALNNVLQEQ-LFSQEAADEICKRLA---PDSR--------LNPHRS 61

Query:    68 AL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
              L TGNYD+NV++AAL+G G + VW DRR   S + L      ++G+++N+P     GL 
Sbjct:    62 LLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQ----VLGLILNLPSPVSLGLL 117

Query:   127 ----KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLG-GEVLLV 177
                 + RHWVALR++DG++YNLDS   AP+   D   VR FL   +  G  EVLLV
Sbjct:   118 SLPLRRRHWVALRQVDGIYYNLDSKLRAPEALGDEDGVRTFLAAALAQGLCEVLLV 173

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1RH21 JOSD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 71/176 (40%), Positives = 107/176 (60%)

Query:     8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
             +YHERQ+L+ C +H+LNN+ QQ+  F++ + +EI ++L    P+ +          PH +
Sbjct:    14 VYHERQRLELCAVHALNNVLQQQ-LFSQEAADEICKRLA---PDSR--------LNPHRS 61

Query:    68 AL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
              L TGNYD+NV++AAL+G+G + VW DRR   S + L      ++G+++N+P     GL 
Sbjct:    62 LLGTGNYDVNVIMAALQGQGLAAVWWDRRRPLSQLALPQ----VLGLILNLPSPVSLGLL 117

Query:   127 ----KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLG-GEVLLV 177
                 + RHWVALR++ GV+YNLDS   AP+   +   VR FL   +  G  EVLLV
Sbjct:   118 SLPLRRRHWVALRQVGGVYYNLDSKLRAPEVLGNEDSVRAFLAAALAQGLCEVLLV 173

GO:0016579 "protein deubiquitination" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

RGD|1307305 Josd2 "Josephin domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 70/176 (39%), Positives = 106/176 (60%)

Query:     8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
             +YHERQ+L+ C +H+LNN+ Q++  F++ + +EI ++L    P+ +          PH +
Sbjct:    14 VYHERQRLELCAVHALNNVLQEQ-LFSQEAADEICKRLA---PDSR--------LNPHRS 61

Query:    68 AL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
              L TGNYD+NV++AAL+G G + VW DRR   S + L      ++G+++N+P     GL 
Sbjct:    62 LLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLVLPQ----VLGLILNLPSPVSLGLL 117

Query:   127 ----KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLG-GEVLLV 177
                 + RHWVALR++DG++YNLDS   AP+       VR FL   +  G  EVLLV
Sbjct:   118 SLPLRRRHWVALRQVDGIYYNLDSKLRAPEALGGEDGVRAFLAAALAQGLCEVLLV 173

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA;ISO

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA;ISO

UNIPROTKB|E2RKB1 JOSD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 68/178 (38%), Positives = 104/178 (58%)

Query:     7 KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
             +IYHE+Q+ + C LH+LNN+FQ   AFTR +L EI ++L    PN         +  PH 
Sbjct:    25 QIYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLS---PN--------TMVTPHK 73

Query:    67 NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
              ++   GNYD+NV++AAL+ +G   VW D+R + SAI L      +MG ++N+P +   G
Sbjct:    74 KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVSAIALTN----VMGFIMNLPSSLCWG 129

Query:   125 LWK----SRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYII-GLGGEVLLV 177
               K     +HW+ +R++ G +YNLDS    P+      E+R+FL + + G   E+LLV
Sbjct:   130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLV 187

GO:0008242 "omega peptidase activity" evidence=IEA

RGD|1305388 Josd1 "Josephin domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 68/178 (38%), Positives = 102/178 (57%)

Query:     7 KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
             +IYHE+Q+ + C LH+LNN+FQ   AFTR +L EI ++L    PN         V  PH 
Sbjct:    25 QIYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLS---PN--------TVVTPHK 73

Query:    67 NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
              ++   GNYD+NV++AAL+ +G   VW D+R +   I L      +MG ++N+P +   G
Sbjct:    74 KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALAN----VMGFIMNLPSSLCWG 129

Query:   125 LWK----SRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYII-GLGGEVLLV 177
               K     +HW+ +R++ G +YNLDS    P+      E+R+FL Y + G   E+LLV
Sbjct:   130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKYHLRGKNCELLLV 187

GO:0006508 "proteolysis" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

UNIPROTKB|Q5EAE5 JOSD1 "Josephin-1" [Bos taurus (taxid:9913)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 67/178 (37%), Positives = 103/178 (57%)

Query:     7 KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
             +IYHE+Q+ + C LH+LNN+FQ   AFTR +L EI ++L    PN         +  PH 
Sbjct:    25 QIYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLS---PN--------TMVTPHK 73

Query:    67 NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
              ++   GNYD+NV++AAL+ +G   VW D+R +  AI L      +MG ++N+P +   G
Sbjct:    74 KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGAIALTN----VMGFIMNLPSSLCWG 129

Query:   125 LWK----SRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYII-GLGGEVLLV 177
               K     +HW+ +R++ G +YNLDS    P+      E+R+FL + + G   E+LLV
Sbjct:   130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGKSELRKFLKHHLRGKNCELLLV 187

GO:0006508 "proteolysis" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CR30	JOS2_MOUSE	3, ., 4, ., 1, 9, ., 1, 2	0.4011	0.8516	0.8244	yes	no
Q8TAC2	JOS2_HUMAN	3, ., 4, ., 1, 9, ., 1, 2	0.4147	0.8461	0.8191	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
pfam02099	158	pfam02099, Josephin, Josephin	7e-50

>gnl|CDD|216874 pfam02099, Josephin, Josephin

 Score =  157 bits (400), Expect = 7e-50
 Identities = 65/174 (37%), Positives = 87/174 (50%), Gaps = 21/174 (12%)

Query: 12  RQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNK---QTWTPLSVVFKPHHNA 68
           RQ+ Q C  H LNNL Q    F+   L  IA++L     NK   + WTP S + +P HN 
Sbjct: 1   RQEGQLCAQHCLNNLLQGP-YFSEFDLASIAKELDQKERNKLSVEHWTPKSFLDEPSHNV 59

Query: 69  -LTGNYDINVLIAALEGRGKSVV-WHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
             TGN+ I VL  ALE  G SV+ WH  R  AS++D D       G + N+         
Sbjct: 60  DDTGNFSIQVLETALEVWGLSVIPWHSPRVGASSLDPDL----ERGFICNL--------- 106

Query: 127 KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKND 180
            S HW  +RK++G WYNL+S   AP+       +  FLD +   G  V +V+ D
Sbjct: 107 -SEHWFTIRKVNGTWYNLNSLLAAPE-HISKFYLSAFLDQLKSEGYSVFVVRGD 158

Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
PF02099	157	Josephin: Josephin; InterPro: IPR006155 Human gene	100.0
KOG2935	315	consensus Ataxin 3/Josephin [General function pred	100.0
KOG2934	204	consensus Uncharacterized conserved protein, conta	100.0
cd02420	125	Peptidase_C39D A sub-family of peptidase family C3	80.31

>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease

Probab=100.00  E-value=5.6e-63  Score=396.29  Aligned_cols=152  Identities=45%  Similarity=0.784  Sum_probs=132.4

Q ss_pred             eccccchHHHHhHhhcCCCCCCCHHHHHHHHHHhcccCCCC---CCCCCCceeeccccCCc-CCCccHHHHHHHHHhCCC
Q 030121           12 RQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNK---QTWTPLSVVFKPHHNAL-TGNYDINVLIAALEGRGK   87 (182)
Q Consensus        12 kQ~~~lCalHaLNnLlQ~~~~Ft~~dL~~Ia~~Ld~~e~~~---~~~~~~~~~~~p~~n~~-~GnydinVl~~AL~~~g~   87 (182)
                      ||+++|||+||||||||| |+||+.||++||++||+.|+..   .++++.+++.+||+||+ +||||||||++||++||+
T Consensus         1 kQ~~~lCalHaLNnLlQ~-~~ft~~dL~~Ia~~Ld~~E~~~~~~~~~~~~~~~~~~s~n~~~~GnysinVL~~AL~~~g~   79 (157)
T PF02099_consen    1 KQELQLCALHALNNLLQG-PYFTAVDLDEIAQELDEEERSLMAEDSWTPLSFLFNPSRNVDGTGNYSINVLMAALQVWGL   79 (157)
T ss_dssp             S-STTSHHHHHHHHHCTS-S-S-HHHHHHHHHHHHHHHHHHHHCTSHHHHHHHTSTSSTCSTTSTCECHHHHHHHHCCT-
T ss_pred             CcHHHHHHHHHHHHHhhh-hhcCHHHHHHHHHHhChhhhhhhhccCccchhhccccccCccccCCcCHHHHHHHHHHcCc
Confidence            899999999999999999 8999999999999999988642   45566778899999999 999999999999999999


Q ss_pred             eEE-eccCCcccccccCCCCccceEEEEEecccccccccccccceEEEEeeCCEEEEeeCCCCCCeEcCCHHHHHHHHHH
Q 030121           88 SVV-WHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDY  166 (182)
Q Consensus        88 ~~~-w~d~r~~~~~~~~~~~~~~~~gfI~N~~~~~~~~~~~~~HWfaIRki~g~wyNLDS~l~~P~~i~~~~~L~~fL~~  166 (182)
                      +++ |+|+|.....++++    ++.|||||.          +|||||||||+|+||||||++++|+.|+++| |.+||++
T Consensus        80 ~~~~~~~~~~~~~~~~~~----~~~gfI~N~----------~~HWf~iRki~~~wyNLDS~l~~P~~i~~~~-l~~fL~~  144 (157)
T PF02099_consen   80 ELVPWFDKRMQEASIDPD----NEFGFICNL----------SRHWFAIRKIGGQWYNLDSKLKEPELISDFY-LSAFLQQ  144 (157)
T ss_dssp             EEEETTSHHHHHCC--CC----CSSEEEEEC----------TTEEEEEEEETTEEEEECTTTSS-EEE-HHH-HHHHHHH
T ss_pred             eEEEccCccchhhhcCch----hceEEEecc----------CcceEEEEeeCCeeEeccCCCCCCcccCHHH-HHHHHHH
Confidence            999 67777766666655    999999997          9999999999999999999999999999875 9999999


Q ss_pred             HHhCCcEEEEEEc
Q 030121          167 IIGLGGEVLLVKN  179 (182)
Q Consensus       167 ~~~~g~~ifvV~~  179 (182)
                      ++++||+||||+|
T Consensus       145 l~~~g~~ifvV~~  157 (157)
T PF02099_consen  145 LQSEGYSIFVVRG  157 (157)
T ss_dssp             HHCCTEEEEEEES
T ss_pred             HHhCCcEEEEEeC
Confidence            9999999999986

Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.

>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]

Probab=100.00  E-value=2.2e-52  Score=353.85  Aligned_cols=159  Identities=26%  Similarity=0.395  Sum_probs=144.8

Q ss_pred             CcceeeeccccchHHHHhHhhcCCCCCCCHHHHHHHHHHhcccCCCCCCCCCCceeeccccCCc-CCCccHHHHHHHHHh
Q 030121            6 CKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNAL-TGNYDINVLIAALEG   84 (182)
Q Consensus         6 ~~iYhEkQ~~~lCalHaLNnLlQ~~~~Ft~~dL~~Ia~~Ld~~e~~~~~~~~~~~~~~p~~n~~-~GnydinVl~~AL~~   84 (182)
                      ..||||+|+..|||+||||+|||| ++|+..||++-+.+++-.|....+-.+..+...|+.||+ +|+||||||.+||+.
T Consensus         2 ~~ifhE~QE~~LCAqHclN~lLQg-~~fs~~dLaD~~erm~m~Eg~v~g~~~~~fl~~~SeNm~~sG~FSIQVl~kALe~   80 (315)
T KOG2935|consen    2 GSIFHEVQESNLCAQHCLNTLLQG-PFFSEFDLADGKERMRMAEGGVTGEFYGDFLQQPSENMDDSGFFSIQVLSKALEV   80 (315)
T ss_pred             CchhhhhhhhhHHHHHHHHHHhcc-cccChhhhhhHHHHHHHHhcccccccccccccCCCcCcCccCceeHHHHHHHHHh
Confidence            469999999999999999999999 899999999999999887776544445677889999999 999999999999999


Q ss_pred             CCCeEEeccCCccc-ccccCCCCccceEEEEEecccccccccccccceEEEEeeCCEEEEeeCCCCCCeEcCCHHHHHHH
Q 030121           85 RGKSVVWHDRRNEA-SAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREF  163 (182)
Q Consensus        85 ~g~~~~w~d~r~~~-~~~~~~~~~~~~~gfI~N~~~~~~~~~~~~~HWfaIRki~g~wyNLDS~l~~P~~i~~~~~L~~f  163 (182)
                      ||+++++|.++... ..+|+.    +..+||||+          +.|||+|||+|++||||||.|.+|+.|+++| |++|
T Consensus        81 w~Leli~~nnP~~~~~~idP~----~erafICnl----------~eHWF~iRKfg~qWfnlnSllagPellSdty-ls~F  145 (315)
T KOG2935|consen   81 WGLELIPFNNPEYQPLQIDPI----NERAFICNL----------KEHWFTIRKFGKQWFNLNSLLAGPELLSDTY-LSAF  145 (315)
T ss_pred             hceeeeecCChhhhhccCCcc----hhhhhhhcc----------hhhhhhHhhhcchhccchhhhcchHHHHHHH-HHHH
Confidence            99999999987554 344444    889999999          9999999999999999999999999999997 9999


Q ss_pred             HHHHHhCCcEEEEEEcC
Q 030121          164 LDYIIGLGGEVLLVKND  180 (182)
Q Consensus       164 L~~~~~~g~~ifvV~~~  180 (182)
                      |++++.+|||||||.|+
T Consensus       146 L~qlq~egySIFVVkG~  162 (315)
T KOG2935|consen  146 LAQLQQEGYSIFVVKGD  162 (315)
T ss_pred             HHHHHhCCeeEEEEecC
Confidence            99999999999999986

>KOG2934 consensus Uncharacterized conserved protein, contains Josephin domain [General function prediction only]

Probab=100.00  E-value=3.5e-49  Score=318.63  Aligned_cols=162  Identities=41%  Similarity=0.772  Sum_probs=149.9

Q ss_pred             CCcceeeeccccchHHHHhHhhcCCCCCCCHHHHHHHHHHhcccCCCCCCCCCCceeeccccCCc-CCCccHHHHHHHHH
Q 030121            5 NCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNAL-TGNYDINVLIAALE   83 (182)
Q Consensus         5 ~~~iYhEkQ~~~lCalHaLNnLlQ~~~~Ft~~dL~~Ia~~Ld~~e~~~~~~~~~~~~~~p~~n~~-~GnydinVl~~AL~   83 (182)
                      ++.||||||++.|||+|||||++|++..||+..+++||..|.+.           .+.+||+++. .||||+||||+|||
T Consensus        23 p~~iYherq~r~lc~lhAlnnv~q~~n~ftr~~~~d~c~~l~p~-----------s~~~Phrs~~g~Gnydvnvimaalq   91 (204)
T KOG2934|consen   23 PPGIYHERQRRELCALHALNNVFQRSNAFTRPVLDDICTRLKPR-----------SWLNPHRSWKGPGNYDVNVIMAALQ   91 (204)
T ss_pred             CCccchhHHHHHHHHHHHhhhhhhccccccchhhHHHHhhcCcc-----------cccCccccccCCCcccHHHHHHHHH
Confidence            34699999999999999999999997799999999999999743           3689999999 99999999999999


Q ss_pred             hCCCeEEeccCCcccccccCCCCccceEEEEEecccccccc-c---ccccceEEEEeeCCEEEEeeCCCCCCeEcCCHHH
Q 030121           84 GRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG-L---WKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKE  159 (182)
Q Consensus        84 ~~g~~~~w~d~r~~~~~~~~~~~~~~~~gfI~N~~~~~~~~-~---~~~~HWfaIRki~g~wyNLDS~l~~P~~i~~~~~  159 (182)
                      ..|+++||||+|+++..+.+.    .+.|||.|+|+....| +   ..+|||.|+|+.+|.||||||++.+|++||+..+
T Consensus        92 ~~gl~avw~dRrrd~~~l~L~----~v~gfIlnlp~~~slG~L~Lp~~rrhw~alR~~~g~yynldsklr~P~~ig~e~~  167 (204)
T KOG2934|consen   92 QCGLEAVWLDRRRDVTALALS----VVFGFILNLPCKFSLGYLRLPVMRRHWLALRSPPGKYYNLDSKLREPECIGTEND  167 (204)
T ss_pred             hcCceeeeccccCCcchhhhH----HHHHHHHcCCchhccccccchhHHhhhHhhhCCCCceecccccccCCcccccchh
Confidence            999999999999999988888    9999999999987544 2   5799999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCC-cEEEEEEcCC
Q 030121          160 VREFLDYIIGLG-GEVLLVKNDK  181 (182)
Q Consensus       160 L~~fL~~~~~~g-~~ifvV~~~~  181 (182)
                      +.+||+..++.+ +++|+|+.+|
T Consensus       168 ~~~fla~hl~~~~~el~lvi~ee  190 (204)
T KOG2934|consen  168 FREFLATHLSMAIEELILVINEE  190 (204)
T ss_pred             HHHHHHHHHHhhhhhheeeeccc
Confidence            999999998877 9999998876

>cd02420 Peptidase_C39D A sub-family of peptidase family C39

Probab=80.31  E-value=18  Score=26.29  Aligned_cols=100  Identities=14%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             cchHHHHhHhhcCCCCCCCHHHHHHHHHHhcccCCCCCCCCCCceeeccccCCcCCCccHHHHHHHHHhCCCeEEeccCC
Q 030121           16 QFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRR   95 (182)
Q Consensus        16 ~lCalHaLNnLlQ~~~~Ft~~dL~~Ia~~Ld~~e~~~~~~~~~~~~~~p~~n~~~GnydinVl~~AL~~~g~~~~w~d~r   95 (182)
                      .-|++.||=.+++-  +=-..+.++|...+....                    .| .++..|.+|++..|+++.-....
T Consensus        10 ~~~gl~~l~~i~~~--~g~~~~~~~l~~~~~~~~--------------------~~-~~~~~l~~~a~~~Gl~~~~~~~~   66 (125)
T cd02420          10 TECGAASLAIILAY--YGRYVPLSELRIACGVSR--------------------DG-SNASNLLKAAREYGLTAKGYKKD   66 (125)
T ss_pred             cCHHHHHHHHHHHH--cCCCCCHHHHHHHcCCCC--------------------CC-CCHHHHHHHHHHcCcccceEecC
Confidence            47999999888873  323344444444543110                    14 68888999999999988543221


Q ss_pred             c-ccccccCCCCccceEEEEEecccccccccccccceEEEEeeC-CEEEEeeCCCCCCeEcCC
Q 030121           96 N-EASAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKID-GVWYNLDSDFHAPQCFKD  156 (182)
Q Consensus        96 ~-~~~~~~~~~~~~~~~gfI~N~~~~~~~~~~~~~HWfaIRki~-g~wyNLDS~l~~P~~i~~  156 (182)
                      . ......+        =.|+-         ++..||+-|-+++ +.++-.|+.. +|+.++-
T Consensus        67 ~~~L~~~~l--------P~I~~---------~~~g~~~Vl~~~~~~~~~i~dp~~-~~~~~s~  111 (125)
T cd02420          67 LEALREVSL--------PAIVF---------WNFNHFLVVEGFDKRKVFLNDPAT-GRRTVSL  111 (125)
T ss_pred             HHHHhcCCC--------CEEEE---------eCCCEEEEEEEEeCCEEEEECCCc-CceeecH
Confidence            1 1111111        11221         1368999998885 4778888854 7887754

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
3o65_A	191	Crystal Structure Of A Josephin-Ubiquitin Complex:		2e-05
2aga_A	190	De-Ubiquitinating Function Of Ataxin-3: Insights Fr		3e-05
2jri_A	182	Solution Structure Of The Josephin Domain Of Ataxin		3e-05
2dos_A	176	Structural Basis For The Recognition Of Lys48-Linke		3e-05

>pdb|3O65|A Chain A, Crystal Structure Of A Josephin-Ubiquitin Complex: Evolutionary Restraints On Ataxin-3 Deubiquitinating Activity Length = 191

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 24/181 (13%)
Query: 8   IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKL------VLDYPNKQTWTPLSVV 61
           I+HE+Q+   C  H LNNL Q E  F+   L  IA +L              +   L+ +
Sbjct: 5   IFHEKQEGFLCAQHCLNNLLQGE-YFSPVELASIAHQLDEEERXRXAEGGVTSEEYLAFL 63
Query: 62  FKPHHNAL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVT 120
            +P  N   TG + I V+  AL+  G  ++ H    E   + +D             P+ 
Sbjct: 64  QQPSENXDDTGFFSIQVISNALKFWGLEII-HFNNPEYQKLGID-------------PIN 109
Query: 121 RYAGLWK-SRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKN 179
             + +    +HW  +RK    W+NL+S    P+   D+  +  FL  +      V +VK 
Sbjct: 110 ERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTC-LANFLARLQQQAYSVFVVKG 168
Query: 180 D 180
           D
Sbjct: 169 D 169

>pdb|2AGA|A Chain A, De-Ubiquitinating Function Of Ataxin-3: Insights From The Solution Structure Of The Josephin Domain Length = 190

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 7   KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
            I+HE+Q+   C  H LNNL Q E  F+   L+ IA +L  D   +       V  + + 
Sbjct: 8   SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQL--DEEERMRMAEGGVTSEDYR 64
Query: 67  NAL---------TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINV 117
             L         +G + I V+  AL+  G  ++  +   E   + +D             
Sbjct: 65  TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNS-PEYQRLRID------------- 110
Query: 118 PVTRYAGLWKSR-HWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLL 176
           P+   + +   + HW  +RK+   W+NL+S    P+   D+  +  FL  +   G  + +
Sbjct: 111 PINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTY-LALFLAQLQQEGYSIFV 169
Query: 177 VKND 180
           VK D
Sbjct: 170 VKGD 173

>pdb|2JRI|A Chain A, Solution Structure Of The Josephin Domain Of Ataxin-3 In Complex With Ubiquitin Molecule. Length = 182

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 7   KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
            I+HE+Q+   C  H LNNL Q E  F+   L+ IA +L  D   +       V  + + 
Sbjct: 3   SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQL--DEEERMRMAEGGVTSEDYR 59
Query: 67  NAL---------TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINV 117
             L         +G + I V+  AL+  G  ++  +   E   + +D             
Sbjct: 60  TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNS-PEYQRLRID------------- 105
Query: 118 PVTRYAGLWKSR-HWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLL 176
           P+   + +   + HW  +RK+   W+NL+S    P+   D+  +  FL  +   G  + +
Sbjct: 106 PINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTY-LALFLAQLQQEGYSIFV 164
Query: 177 VKND 180
           VK D
Sbjct: 165 VKGD 168

>pdb|2DOS|A Chain A, Structural Basis For The Recognition Of Lys48-Linked Polyubiquitin Chain By The Josephin Domain Of Ataxin-3, A Putative Deubiquitinating Enzyme Length = 176

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 7   KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
            I+HE+Q+   C  H LNNL Q E  F+   L+ IA +L  D   +       V  + + 
Sbjct: 8   SIFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQL--DEEERMRMAEGGVTSEDYR 64
Query: 67  NAL---------TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINV 117
             L         +G + I V+  AL+  G  ++  +   E   + +D             
Sbjct: 65  TFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSP-EYQRLRID------------- 110
Query: 118 PVTRYAGLWKSR-HWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLL 176
           P+   + +   + HW  +RK+   W+NL+S    P+   D+  +  FL  +   G  + +
Sbjct: 111 PINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTY-LALFLAQLQQEGYSIFV 169
Query: 177 VKND 180
           VK D
Sbjct: 170 VKGD 173

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
3o65_A	191	Putative ataxin-3-like protein; papain-like fold,	1e-47

>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A Length = 191

 Score =  152 bits (386), Expect = 1e-47
 Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 22/181 (12%)

Query: 7   KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKL------VLDYPNKQTWTPLSV 60
            I+HE+Q+   C  H LNNL Q E  F+   L  IA +L       +      +   L+ 
Sbjct: 4   FIFHEKQEGFLCAQHCLNNLLQGE-YFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAF 62

Query: 61  VFKPHHNAL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPV 119
           + +P  N   TG + I V+  AL+  G  ++  +                   + I+   
Sbjct: 63  LQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPE-------------YQKLGIDPIN 109

Query: 120 TRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKN 179
            R       +HW  +RK    W+NL+S    P+   D+  +  FL  +      V +VK 
Sbjct: 110 ERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDT-CLANFLARLQQQAYSVFVVKG 168

Query: 180 D 180
           D
Sbjct: 169 D 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
3o65_A	191	Putative ataxin-3-like protein; papain-like fold,	100.0

>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A

Probab=100.00  E-value=3.4e-67  Score=430.21  Aligned_cols=161  Identities=29%  Similarity=0.412  Sum_probs=145.3

Q ss_pred             CCcceeeeccccchHHHHhHhhcCCCCCCCHHHHHHHHHHhcccCC---CCCCCC---CCceeeccccCCc-CCCccHHH
Q 030121            5 NCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYP---NKQTWT---PLSVVFKPHHNAL-TGNYDINV   77 (182)
Q Consensus         5 ~~~iYhEkQ~~~lCalHaLNnLlQ~~~~Ft~~dL~~Ia~~Ld~~e~---~~~~~~---~~~~~~~p~~n~~-~GnydinV   77 (182)
                      +..||||||+++|||+||||||||| ++||++||++||++||+.|+   ++++++   +.+++.+||+||+ +|||||||
T Consensus         2 m~~IYhEkQ~~~LCalHaLNnLLQg-~~Ft~~dL~~Ia~~Ld~~e~~~m~e~g~~~~d~~~~~~~ps~n~~~~GnfsInV   80 (191)
T 3o65_A            2 MDFIFHEKQEGFLCAQHCLNNLLQG-EYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQV   80 (191)
T ss_dssp             CTTSCCCCCCTTCHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHHHHGGGCTTSHHHHHHHTSCCSSBCTTCCBBHHH
T ss_pred             cccceeeccchhhHHHHHHHHHhcc-ccCCHHHHHHHHHHcCHHHHHHHhhcCCChHHHHHHhcCCCCCcccCCCccHHH
Confidence            3569999999999999999999999 89999999999999999886   345555   3456689999999 99999999


Q ss_pred             HHHHHHhCCCeEEeccCCccc-ccccCCCCccceEEEEEecccccccccccccceEEEEeeCCEEEEeeCCCCCCeEcCC
Q 030121           78 LIAALEGRGKSVVWHDRRNEA-SAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKD  156 (182)
Q Consensus        78 l~~AL~~~g~~~~w~d~r~~~-~~~~~~~~~~~~~gfI~N~~~~~~~~~~~~~HWfaIRki~g~wyNLDS~l~~P~~i~~  156 (182)
                      |++||++||++++|||+|+.. ..++    +.++.|||||+          +|||||||||+|+||||||++++|++|++
T Consensus        81 l~~AL~~~glelv~~d~~~~~~~~~~----p~~~~~FI~N~----------~~HWfaiRkigg~WyNLdS~l~~P~~i~~  146 (191)
T 3o65_A           81 ISNALKFWGLEIIHFNNPEYQKLGID----PINERSFICNY----------KQHWFTIRKFGKHWFNLNSLLAGPELISD  146 (191)
T ss_dssp             HHHHHHTTTCEEEETTCHHHHHTCCC----GGGCCEEEEEE----------SSCEEEEEEETTEEEECCTTSSSCEEECH
T ss_pred             HHHHHHHcCCeEEECCCchhhhhcCC----hhhhhhhhhcc----------ccceeeEEecCCEEEEccCCCCCCCCcCh
Confidence            999999999999999998764 3344    44889999998          89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEEcCC
Q 030121          157 SKEVREFLDYIIGLGGEVLLVKNDK  181 (182)
Q Consensus       157 ~~~L~~fL~~~~~~g~~ifvV~~~~  181 (182)
                      +| |..||.|++.+|||||||+|+-
T Consensus       147 ~y-L~~fL~ql~~eg~siFvV~g~l  170 (191)
T 3o65_A          147 TC-LANFLARLQQQAYSVFVVKGDL  170 (191)
T ss_dssp             HH-HHHHHGGGGSTTEEEEEEESCC
T ss_pred             HH-HHHHHHHHHHCCCEEEEEcCCC
Confidence            95 9999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00