Citrus Sinensis ID: 030122
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 182 | 2.2.26 [Sep-21-2011] | |||||||
| Q96361 | 182 | ADP-ribosylation factor 1 | N/A | no | 0.857 | 0.857 | 0.897 | 1e-79 | |
| P40940 | 182 | ADP-ribosylation factor 3 | yes | no | 0.857 | 0.857 | 0.891 | 4e-79 | |
| P25160 | 180 | ADP-ribosylation factor-l | yes | no | 0.851 | 0.861 | 0.625 | 7e-53 | |
| P40616 | 181 | ADP-ribosylation factor-l | yes | no | 0.851 | 0.856 | 0.619 | 2e-52 | |
| P61212 | 181 | ADP-ribosylation factor-l | yes | no | 0.851 | 0.856 | 0.625 | 2e-52 | |
| P61211 | 181 | ADP-ribosylation factor-l | yes | no | 0.851 | 0.856 | 0.625 | 2e-52 | |
| Q2YDM1 | 181 | ADP-ribosylation factor-l | yes | no | 0.851 | 0.856 | 0.619 | 4e-52 | |
| P38116 | 183 | ADP-ribosylation factor-l | yes | no | 0.846 | 0.841 | 0.590 | 7e-51 | |
| Q20758 | 180 | ADP-ribosylation factor-l | yes | no | 0.846 | 0.855 | 0.590 | 3e-50 | |
| O48649 | 181 | ADP-ribosylation factor 1 | N/A | no | 0.851 | 0.856 | 0.554 | 1e-49 |
| >sp|Q96361|ARF1_BRARP ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 295 bits (755), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 140/156 (89%), Positives = 146/156 (93%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDSSDTDRI AKEEFHAILEEEELKGAV LIFANKQDLPGALDDAAV+EALE
Sbjct: 85 TQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct: 145 LHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Brassica rapa subsp. pekinensis (taxid: 51351) |
| >sp|P40940|ARF3_ARATH ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 293 bits (750), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 139/156 (89%), Positives = 146/156 (93%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDSSDTDRI AKEEFHAILEE+ELKGAV LIFANKQDLPGALDDAAV+EALE
Sbjct: 85 TQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct: 145 LHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|P25160|ARL1_DROME ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=2 SV=5 | Back alignment and function description |
|---|
Score = 206 bits (524), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 97/155 (62%), Positives = 117/155 (75%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVE V Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 24 LDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 83
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+A+IYVVDS+D DRI +K+E +L EEEL GA+ ++ ANKQD+ G + A V AL
Sbjct: 84 TDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALG 143
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +KNR + IFKT A KGEGL + MDWLSNTL+S
Sbjct: 144 LENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQS 178
|
Binds and hydrolyzes GTP. Does not act as an allosteric activator of the cholera toxin catalytic subunit. Drosophila melanogaster (taxid: 7227) |
| >sp|P40616|ARL1_HUMAN ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/155 (61%), Positives = 118/155 (76%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 25 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDS D DRI +K E A+LEEEEL+ A+ ++FANKQD+ A+ + ++ +L
Sbjct: 85 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 145 LPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
GTP-binding protein that has very low efficiency as allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Can activate phospholipase D with very low efficiency. Important for normal function of the Golgi apparatus. Homo sapiens (taxid: 9606) |
| >sp|P61212|ARL1_RAT ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/155 (62%), Positives = 118/155 (76%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 25 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDS D DRI +K E A+LEEEEL+ A+ ++FANKQD+ A+ + ++ AL
Sbjct: 85 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 145 LPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
GTP-binding protein that has very low efficiency as allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Can activate phospholipase D with very low efficiency (By similarity). Important for normal function of the Golgi apparatus. Rattus norvegicus (taxid: 10116) |
| >sp|P61211|ARL1_MOUSE ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/155 (62%), Positives = 118/155 (76%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 25 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDS D DRI +K E A+LEEEEL+ A+ ++FANKQD+ A+ + ++ AL
Sbjct: 85 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 145 LPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
GTP-binding protein that has very low efficiency as allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Can activate phospholipase D with very low efficiency. Important for normal function of the Golgi apparatus. Mus musculus (taxid: 10090) |
| >sp|Q2YDM1|ARL1_BOVIN ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (517), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 96/155 (61%), Positives = 118/155 (76%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 25 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDS D DRI +K E A+LEEEEL+ A+ ++FANKQD+ A+ + ++ +L
Sbjct: 85 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 145 LPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
Does not act as an allosteric activator of the cholera toxin catalytic subunit. Bos taurus (taxid: 9913) |
| >sp|P38116|ARL1_YEAST ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARL1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 117/154 (75%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+T PTIGFNVET+ Y N+K VWDLGGQTSIRPYWRCY+ +
Sbjct: 26 LDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYAD 85
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T AVI+VVDS+D DR+ TA +E H +L+EEEL+ A L+FANKQD PGAL + VS+ L
Sbjct: 86 TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELN 145
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
L ++K+R W+I + AIKGEG+ EG+DWL + +K
Sbjct: 146 LVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179
|
Recruits golgins such as IMH1 to the Golgi. Can bind and hydrolyze GTP. May be involved in trafficking events within the endosomal system. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q20758|ARL1_CAEEL ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 116/154 (75%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVE V+Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 24 LDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYAN 83
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+A+IYVVDS+D DR+ +++E +L+E+EL+GAV + ANKQD+ G L + V +AL
Sbjct: 84 TDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLTETEVYKALG 143
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
L ++NR IFKT A KGEGL MDWL+N L+
Sbjct: 144 LDALRNRTIQIFKTSASKGEGLDPAMDWLANQLQ 177
|
GTP-binding protein that may be involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Caenorhabditis elegans (taxid: 6239) |
| >sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 115/155 (74%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G +L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR YF N
Sbjct: 25 LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+ +I+VVDS+D DR+ A++E H +L E+EL+ AV L+FANKQDLP A++ A +++ L
Sbjct: 85 TQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
LH ++ R W I TCA GEGL+EG+DWLSN + S
Sbjct: 145 LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISS 179
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Salix bakko (taxid: 72444) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 182 | ||||||
| 3182922 | 182 | RecName: Full=ADP-ribosylation factor 1 | 0.857 | 0.857 | 0.897 | 5e-78 | |
| 297802862 | 182 | ADP-ribosylation factor 3 [Arabidopsis l | 0.857 | 0.857 | 0.891 | 1e-77 | |
| 30682545 | 182 | ADP-ribosylation factor 3 [Arabidopsis t | 0.857 | 0.857 | 0.891 | 2e-77 | |
| 356562475 | 182 | PREDICTED: ADP-ribosylation factor 1-lik | 0.862 | 0.862 | 0.885 | 2e-77 | |
| 358249126 | 182 | uncharacterized protein LOC100815426 [Gl | 0.862 | 0.862 | 0.885 | 2e-77 | |
| 357479799 | 182 | ADP-ribosylation factor [Medicago trunca | 0.862 | 0.862 | 0.878 | 3e-77 | |
| 449462681 | 182 | PREDICTED: ADP-ribosylation factor 1-lik | 0.862 | 0.862 | 0.872 | 3e-77 | |
| 225430573 | 181 | PREDICTED: ADP-ribosylation factor 1 [Vi | 0.862 | 0.867 | 0.872 | 5e-77 | |
| 225446168 | 182 | PREDICTED: ADP-ribosylation factor 1 [Vi | 0.862 | 0.862 | 0.878 | 5e-77 | |
| 388497350 | 182 | unknown [Lotus japonicus] | 0.862 | 0.862 | 0.878 | 6e-77 |
| >gi|3182922|sp|Q96361.3|ARF1_BRARP RecName: Full=ADP-ribosylation factor 1 gi|1654142|gb|AAB17725.1| small GTP-binding protein ARF [Brassica rapa subsp. campestris] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 140/156 (89%), Positives = 146/156 (93%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDSSDTDRI AKEEFHAILEEEELKGAV LIFANKQDLPGALDDAAV+EALE
Sbjct: 85 TQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct: 145 LHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
|
Source: Brassica rapa subsp. campestris Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802862|ref|XP_002869315.1| ADP-ribosylation factor 3 [Arabidopsis lyrata subsp. lyrata] gi|297315151|gb|EFH45574.1| ADP-ribosylation factor 3 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 139/156 (89%), Positives = 146/156 (93%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDSSDTDRI AKEEFHAILEEEELKGA+ LIFANKQDLPGALDDAAV+EALE
Sbjct: 85 TQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAMVLIFANKQDLPGALDDAAVTEALE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct: 145 LHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30682545|ref|NP_850057.1| ADP-ribosylation factor 3 [Arabidopsis thaliana] gi|297821835|ref|XP_002878800.1| ADP-ribosylation factor 3 [Arabidopsis lyrata subsp. lyrata] gi|728882|sp|P40940.2|ARF3_ARATH RecName: Full=ADP-ribosylation factor 3; Short=AtARF3; AltName: Full=Protein ARF-LIKE 1; Short=AtARL1 gi|453191|emb|CAA54564.1| ADP-ribosylation factor 3 [Arabidopsis thaliana] gi|17380732|gb|AAL36196.1| putative ADP-ribosylation factor 3 [Arabidopsis thaliana] gi|23297380|gb|AAN12955.1| ADP-ribosylation factor 3 [Arabidopsis thaliana] gi|26450543|dbj|BAC42384.1| putative ADP-ribosylation factor 3 protein [Arabidopsis thaliana] gi|297324639|gb|EFH55059.1| ADP-ribosylation factor 3 [Arabidopsis lyrata subsp. lyrata] gi|330252531|gb|AEC07625.1| ADP-ribosylation factor 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/156 (89%), Positives = 146/156 (93%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDSSDTDRI AKEEFHAILEE+ELKGAV LIFANKQDLPGALDDAAV+EALE
Sbjct: 85 TQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct: 145 LHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562475|ref|XP_003549496.1| PREDICTED: ADP-ribosylation factor 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/157 (88%), Positives = 145/157 (92%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+A+IYVVDSSD DR+ AKEEFHAILEEEELKGAV LIFANKQDLPGALDDAAV+EALE
Sbjct: 85 TQAIIYVVDSSDVDRLVIAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181
LHKIKNRQWAIFKT AIKGEGLFEG+DWLSNTLKSGG
Sbjct: 145 LHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSGG 181
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358249126|ref|NP_001239997.1| uncharacterized protein LOC100815426 [Glycine max] gi|255644587|gb|ACU22796.1| unknown [Glycine max] gi|255646651|gb|ACU23799.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/157 (88%), Positives = 145/157 (92%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+A+IYVVDSSD DR+ AKEEFHAILEEEELKGAV LIFANKQDLPGALDDAAV+EALE
Sbjct: 85 TQAIIYVVDSSDVDRLVIAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181
LHKIKNRQWAIFKT AIKGEGLFEG+DWLSNTLKSGG
Sbjct: 145 LHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSGG 181
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357479799|ref|XP_003610185.1| ADP-ribosylation factor [Medicago truncatula] gi|355511240|gb|AES92382.1| ADP-ribosylation factor [Medicago truncatula] gi|388496430|gb|AFK36281.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 138/157 (87%), Positives = 146/157 (92%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+A+IYVVDSSDTDR+ A+EEFHAILEEEELKGAV LIFANKQDLPGALDDAAV+E+LE
Sbjct: 85 TQAIIYVVDSSDTDRLVIAREEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTESLE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181
LHKIKNRQWAIFKT AIKGEGLFEG+DWLSNTLKSGG
Sbjct: 145 LHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSGG 181
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462681|ref|XP_004149069.1| PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus] gi|449519531|ref|XP_004166788.1| PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 137/157 (87%), Positives = 146/157 (92%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+A+IYVVDSSDTDR+ A+EEFHAILEEEEL+GAVAL+FANKQDLPGALDDAAV+EALE
Sbjct: 85 TQAIIYVVDSSDTDRLVVAREEFHAILEEEELRGAVALVFANKQDLPGALDDAAVTEALE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181
LHKIKNRQWAIFK AIKGEGLFEG+DWLSNTLKSGG
Sbjct: 145 LHKIKNRQWAIFKASAIKGEGLFEGLDWLSNTLKSGG 181
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430573|ref|XP_002263625.1| PREDICTED: ADP-ribosylation factor 1 [Vitis vinifera] gi|296082183|emb|CBI21188.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 137/157 (87%), Positives = 146/157 (92%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+A+IYVVDSSDTDRI AK+EFHAILEEEELKGA+ LIFANKQDLPGALDDAA++EALE
Sbjct: 85 TQAIIYVVDSSDTDRIVIAKDEFHAILEEEELKGAIVLIFANKQDLPGALDDAALTEALE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181
LHKIKNRQWAIFKTCAIKGEGL+EG+DWLSN LKSGG
Sbjct: 145 LHKIKNRQWAIFKTCAIKGEGLYEGLDWLSNILKSGG 181
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446168|ref|XP_002277581.1| PREDICTED: ADP-ribosylation factor 1 [Vitis vinifera] gi|297735327|emb|CBI17767.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 291 bits (746), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 138/157 (87%), Positives = 146/157 (92%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+A+IYVVDSSDTDR+ AK+EFHAIL+EEELKGAV LIFANKQDLPGALDDAAV+EALE
Sbjct: 85 TQAIIYVVDSSDTDRLVIAKDEFHAILQEEELKGAVVLIFANKQDLPGALDDAAVTEALE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181
LHKIKNRQWAIFKT AIKGEGLFEG+DWLSNTLKSGG
Sbjct: 145 LHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSGG 181
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388497350|gb|AFK36741.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 291 bits (746), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 138/157 (87%), Positives = 145/157 (92%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+A+IYVVDSSDTDR+ AKEEFHAILEEEELKGAV LIFANKQDLPGALDDAAV+EALE
Sbjct: 85 TQAIIYVVDSSDTDRLVIAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181
LHKIKNRQW+IFK AIKGEGLFEG+DWLSNTLKSGG
Sbjct: 145 LHKIKNRQWSIFKISAIKGEGLFEGLDWLSNTLKSGG 181
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 182 | ||||||
| TAIR|locus:2827399 | 182 | ARF3 "ADP-ribosylation factor | 0.857 | 0.857 | 0.826 | 5.8e-66 | |
| DICTYBASE|DDB_G0288163 | 183 | arl1 "ARF-like protein" [Dicty | 0.862 | 0.857 | 0.585 | 4.7e-48 | |
| FB|FBgn0000115 | 180 | Arl1 "ADP ribosylation factor- | 0.851 | 0.861 | 0.593 | 5.6e-45 | |
| UNIPROTKB|E1BVB0 | 181 | ARL1 "Uncharacterized protein" | 0.851 | 0.856 | 0.587 | 2.4e-44 | |
| UNIPROTKB|B5FY69 | 181 | B5FY69 "Putative ADP-ribosylat | 0.851 | 0.856 | 0.587 | 2.4e-44 | |
| UNIPROTKB|B5XET7 | 181 | ARL1 "ADP-ribosylation factor- | 0.851 | 0.856 | 0.587 | 2.4e-44 | |
| UNIPROTKB|C1BXG7 | 181 | ARL1 "ADP-ribosylation factor- | 0.851 | 0.856 | 0.587 | 2.4e-44 | |
| UNIPROTKB|G1NGS7 | 181 | ARL1 "Uncharacterized protein" | 0.851 | 0.856 | 0.587 | 2.4e-44 | |
| ZFIN|ZDB-GENE-040718-175 | 181 | arl1 "ADP-ribosylation factor- | 0.851 | 0.856 | 0.587 | 2.4e-44 | |
| UNIPROTKB|G1KLB7 | 181 | ARL1 "Uncharacterized protein" | 0.851 | 0.856 | 0.587 | 3.1e-44 |
| TAIR|locus:2827399 ARF3 "ADP-ribosylation factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 129/156 (82%), Positives = 135/156 (86%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN
Sbjct: 25 LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDSSDTDRI AK LKGAV LIFANKQDLPGALDDAAV+EALE
Sbjct: 85 TQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALE 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct: 145 LHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
|
|
| DICTYBASE|DDB_G0288163 arl1 "ARF-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 92/157 (58%), Positives = 114/157 (72%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D+ G +LQ GEV++TIPTIGFNVE++ Y NI+F +WDLGGQ++IRPYWRCY+PN
Sbjct: 25 LDSAGKTTILYKLQCGEVLTTIPTIGFNVESITYKNIRFFLWDLGGQSAIRPYWRCYYPN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T A+IYVVDSSD DR+ A L+ L+FANKQDLPGAL DA VSE L+
Sbjct: 85 TNAIIYVVDSSDPDRLGIANEELVAMLSEEELRTTPLLVFANKQDLPGALSDAQVSEGLK 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181
L +KNRQWAIFKT AI G G++EG+DWL N + GG
Sbjct: 145 LSSLKNRQWAIFKTSAINGVGIYEGLDWLVNVISGGG 181
|
|
| FB|FBgn0000115 Arl1 "ADP ribosylation factor-like 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 92/155 (59%), Positives = 110/155 (70%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVE V Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 24 LDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 83
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+A+IYVVDS+D DRI +K L GA+ ++ ANKQD+ G + A V AL
Sbjct: 84 TDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALG 143
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +KNR + IFKT A KGEGL + MDWLSNTL+S
Sbjct: 144 LENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQS 178
|
|
| UNIPROTKB|E1BVB0 ARL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 91/155 (58%), Positives = 109/155 (70%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 25 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDS D DRI T+K LK A+ ++FANKQD+ A+ ++ AL
Sbjct: 85 TDAVIYVVDSCDRDRIGTSKSELVAMLEEEELKKAILVVFANKQDMEQAMTPTEMANALG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL LKS
Sbjct: 145 LPALKDRKWQIFKTSATKGTGLDEAMEWLVEALKS 179
|
|
| UNIPROTKB|B5FY69 B5FY69 "Putative ADP-ribosylation factor-like 1" [Taeniopygia guttata (taxid:59729)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 91/155 (58%), Positives = 109/155 (70%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 25 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDS D DRI T+K LK A+ ++FANKQD+ A+ ++ AL
Sbjct: 85 TDAVIYVVDSCDRDRIGTSKSELVAMLEEEELKKAILVVFANKQDMEQAMTPTEMANALG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL LKS
Sbjct: 145 LPALKDRKWQIFKTSATKGTGLDEAMEWLVEALKS 179
|
|
| UNIPROTKB|B5XET7 ARL1 "ADP-ribosylation factor-like protein 1" [Salmo salar (taxid:8030)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 91/155 (58%), Positives = 110/155 (70%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 25 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDSSD DR+ +K LK A+ ++FANKQD+ A+ A V+ +L
Sbjct: 85 TDAVIYVVDSSDRDRMGISKSELVAMLEEEELKKAILVVFANKQDMEQAMTPAEVANSLG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL LKS
Sbjct: 145 LPALKDRKWQIFKTSATKGTGLDEAMEWLVEALKS 179
|
|
| UNIPROTKB|C1BXG7 ARL1 "ADP-ribosylation factor-like protein 1" [Esox lucius (taxid:8010)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 91/155 (58%), Positives = 110/155 (70%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 25 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDSSD DR+ +K LK A+ ++FANKQD+ A+ A V+ +L
Sbjct: 85 TDAVIYVVDSSDRDRMGISKSELVAMLEEEELKKAILVVFANKQDMEQAMTPAEVANSLG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL LKS
Sbjct: 145 LPALKDRKWQIFKTSATKGTGLDEAMEWLVEALKS 179
|
|
| UNIPROTKB|G1NGS7 ARL1 "Uncharacterized protein" [Meleagris gallopavo (taxid:9103)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 91/155 (58%), Positives = 109/155 (70%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 25 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDS D DRI T+K LK A+ ++FANKQD+ A+ ++ AL
Sbjct: 85 TDAVIYVVDSCDRDRIGTSKSELVAMLEEEELKKAILVVFANKQDMEQAMTPTEMANALG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL LKS
Sbjct: 145 LPALKDRKWQIFKTSATKGTGLDEAMEWLVEALKS 179
|
|
| ZFIN|ZDB-GENE-040718-175 arl1 "ADP-ribosylation factor-like 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 91/155 (58%), Positives = 110/155 (70%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 25 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDSSD DR+ +K LK A+ ++FANKQD+ A+ V+ AL
Sbjct: 85 TDAVIYVVDSSDRDRMGISKSELVAMLEEEELKKAILVVFANKQDMEQAMTPTEVANALG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL +LKS
Sbjct: 145 LPALKDRKWQIFKTSATKGTGLDEAMEWLVESLKS 179
|
|
| UNIPROTKB|G1KLB7 ARL1 "Uncharacterized protein" [Anolis carolinensis (taxid:28377)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 91/155 (58%), Positives = 109/155 (70%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 25 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDS D DRI +K LK A+ ++FANKQD+ A+ ++ AL
Sbjct: 85 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELKKAILVVFANKQDMEQAMTPTEMANALG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 145 LPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O48920 | ARF_VIGUN | No assigned EC number | 0.5483 | 0.8516 | 0.8563 | N/A | no |
| P22274 | ARF_CANAL | No assigned EC number | 0.5695 | 0.8296 | 0.8435 | N/A | no |
| Q2YDM1 | ARL1_BOVIN | No assigned EC number | 0.6193 | 0.8516 | 0.8563 | yes | no |
| P61212 | ARL1_RAT | No assigned EC number | 0.6258 | 0.8516 | 0.8563 | yes | no |
| P40616 | ARL1_HUMAN | No assigned EC number | 0.6193 | 0.8516 | 0.8563 | yes | no |
| P61211 | ARL1_MOUSE | No assigned EC number | 0.6258 | 0.8516 | 0.8563 | yes | no |
| P51821 | ARF1_CHLRE | No assigned EC number | 0.5555 | 0.8406 | 0.8453 | N/A | no |
| P36579 | ARF1_SCHPO | No assigned EC number | 0.5419 | 0.8516 | 0.8611 | yes | no |
| Q96361 | ARF1_BRARP | No assigned EC number | 0.8974 | 0.8571 | 0.8571 | N/A | no |
| P38116 | ARL1_YEAST | No assigned EC number | 0.5909 | 0.8461 | 0.8415 | yes | no |
| P25160 | ARL1_DROME | No assigned EC number | 0.6258 | 0.8516 | 0.8611 | yes | no |
| Q20758 | ARL1_CAEEL | No assigned EC number | 0.5909 | 0.8461 | 0.8555 | yes | no |
| P40940 | ARF3_ARATH | No assigned EC number | 0.8910 | 0.8571 | 0.8571 | yes | no |
| O48649 | ARF1_SALBA | No assigned EC number | 0.5548 | 0.8516 | 0.8563 | N/A | no |
| Q61LA8 | ARF12_CAEBR | No assigned EC number | 0.5612 | 0.8516 | 0.8563 | N/A | no |
| P49076 | ARF_MAIZE | No assigned EC number | 0.5354 | 0.8516 | 0.8563 | N/A | no |
| P34727 | ARF_AJECA | No assigned EC number | 0.5286 | 0.8626 | 0.8579 | N/A | no |
| P51822 | ARF1_DAUCA | No assigned EC number | 0.5548 | 0.8516 | 0.8563 | N/A | no |
| O23778 | ARF1_CATRO | No assigned EC number | 0.5424 | 0.8406 | 0.8453 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 182 | |||
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 1e-102 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 7e-91 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 1e-77 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 8e-77 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 6e-71 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 4e-70 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 5e-69 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 1e-68 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 4e-66 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 2e-63 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 4e-59 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 3e-49 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 7e-47 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 3e-44 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 4e-44 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 5e-37 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 1e-36 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 3e-35 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 3e-25 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 3e-24 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 6e-23 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 2e-14 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-14 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 6e-12 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-11 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 4e-11 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 1e-06 | |
| smart00275 | 342 | smart00275, G_alpha, G protein alpha subunit | 3e-06 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 8e-06 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 1e-05 | |
| pfam04670 | 230 | pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve | 2e-05 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 3e-05 | |
| cd00066 | 315 | cd00066, G-alpha, Alpha subunit of G proteins (gua | 3e-05 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 6e-05 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 8e-05 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 9e-05 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 1e-04 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 1e-04 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 2e-04 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 4e-04 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 5e-04 | |
| PRK12297 | 424 | PRK12297, obgE, GTPase CgtA; Reviewed | 8e-04 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 0.002 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 290 bits (743), Expect = e-102
Identities = 103/141 (73%), Positives = 120/141 (85%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ NT+A+IYVVDS+
Sbjct: 18 RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST 77
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DR+ +K E HA+LEEEELK AV L+FANKQD+PGAL +A V+E L L ++K+R W I
Sbjct: 78 DRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAEVAEKLGLSELKDRTWQI 137
Query: 156 FKTCAIKGEGLFEGMDWLSNT 176
FKT A KGEGL EGMDWL NT
Sbjct: 138 FKTSATKGEGLDEGMDWLVNT 158
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 262 bits (672), Expect = 7e-91
Identities = 91/142 (64%), Positives = 113/142 (79%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++GE+V+TIPTIGFNVETV Y N+KF VWD+GGQ S+RP WR YFPNT+AVI+VVDS+
Sbjct: 33 KLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSA 92
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DRI+ AKEE HA+L EEEL A LI ANKQDLPGA+ +A + E L LH++K+R W I
Sbjct: 93 DRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKDRPWEI 152
Query: 156 FKTCAIKGEGLFEGMDWLSNTL 177
A+ GEGL EG+DWLSN +
Sbjct: 153 QGCSAVTGEGLDEGLDWLSNYI 174
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 1e-77
Identities = 84/140 (60%), Positives = 106/140 (75%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++GEVV+TIPTIGFNVETV+Y N+KF VWD+GGQ IRP W+ Y+ NT+ +I+VVDSS
Sbjct: 18 KLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSS 77
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D +RI+ AK E H +L EEELKGA LI ANKQDLPGAL ++ + E L L IK R+W I
Sbjct: 78 DRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELIELLGLESIKGRRWHI 137
Query: 156 FKTCAIKGEGLFEGMDWLSN 175
A+ G+GL EG+DWL
Sbjct: 138 QPCSAVTGDGLDEGLDWLIE 157
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 8e-77
Identities = 84/141 (59%), Positives = 109/141 (77%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR YF NT+ +I+VVDS+
Sbjct: 19 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 78
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D +RI A+EE +L E+EL+ AV L+FANKQDLP A+ A V++ L LH ++NR W I
Sbjct: 79 DRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYI 138
Query: 156 FKTCAIKGEGLFEGMDWLSNT 176
TCA G+GL+EG+DWLSN
Sbjct: 139 QATCATSGDGLYEGLDWLSNN 159
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 6e-71
Identities = 79/144 (54%), Positives = 106/144 (73%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++GEVV+TIPTIGFNVETV+Y N+KF +WD+GGQ +RP WR Y+ NT +I+VVDS+
Sbjct: 36 KLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSN 95
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D +RI A+EE +L E+EL+ AV L+FANKQDLP A+ V+E L LH ++ R W I
Sbjct: 96 DRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYI 155
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
CA +GL+EG+DWLS +K
Sbjct: 156 QGCCATTAQGLYEGLDWLSANIKK 179
|
Length = 182 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 210 bits (535), Expect = 4e-70
Identities = 86/144 (59%), Positives = 110/144 (76%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++GE V+TIPTIGFNVETV Y NI F VWD+GGQ IRP WR Y+ NT+ +I+VVDS+
Sbjct: 32 KLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSN 91
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DRI A+EE H +L E+EL+ AV L+FANKQDLP A+ A ++E L LH I++R W I
Sbjct: 92 DRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYI 151
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
TCA G+GL+EG+ WLSN LK+
Sbjct: 152 QPTCATSGDGLYEGLTWLSNNLKN 175
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 5e-69
Identities = 72/140 (51%), Positives = 104/140 (74%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ IRP WR Y+ T+ +I+VVDS+
Sbjct: 28 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSA 87
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DRI A++E H I+ + E++ A+ L+FANKQDLP A+ + E L L +I++R W +
Sbjct: 88 DRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 147
Query: 156 FKTCAIKGEGLFEGMDWLSN 175
+CA G+GL+EG+ WLS+
Sbjct: 148 QPSCATSGDGLYEGLTWLSS 167
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 1e-68
Identities = 83/144 (57%), Positives = 112/144 (77%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR YF NT+ +I+VVDS+
Sbjct: 36 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DR+ A++E H +L E+EL+ AV L+FANKQDLP A++ A +++ L LH ++ R W I
Sbjct: 96 DRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI 155
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
TCA GEGL+EG+DWLSN + +
Sbjct: 156 QSTCATSGEGLYEGLDWLSNNIAN 179
|
Length = 181 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 4e-66
Identities = 73/152 (48%), Positives = 102/152 (67%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G + +GEVV T PTIG NVE + Y NI+F +WD+GGQ S+R W Y+ N
Sbjct: 23 LDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTN 82
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVI V+DS+D +R+ KEE + +L E+L+ AV L+ ANKQDL GA+ A +SE+L
Sbjct: 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLG 142
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176
L I++ W I CA+ GEGL EG+DW+++
Sbjct: 143 LTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 2e-63
Identities = 74/137 (54%), Positives = 96/137 (70%), Gaps = 1/137 (0%)
Query: 40 GEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98
GE +STI PT+GFN++T++YN K +WD+GGQ S+R YWR YF +T+A+I+VVDSSD
Sbjct: 36 GEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRA 95
Query: 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158
R++ K E +L EE L GA LIFANKQDLPGAL + E LEL IK+ W IF
Sbjct: 96 RLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALSPEEIREVLELDSIKSHHWRIFGC 155
Query: 159 CAIKGEGLFEGMDWLSN 175
A+ GE L +G+DWL +
Sbjct: 156 SAVTGENLLDGIDWLVD 172
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 4e-59
Identities = 70/134 (52%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Query: 41 EVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
E +S I PT GFN++ VQ + K VWD+GGQ IRPYWR YF NT+ +IYV+DS+D R
Sbjct: 38 EDISHITPTQGFNIKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKR 97
Query: 100 IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159
+ A +E +LEEE+L G L+FANKQDL A V+EAL LH I++R W I
Sbjct: 98 FEEAGQELVELLEEEKLAGVPVLVFANKQDLLTAAPAEEVAEALNLHDIRDRSWHIQACS 157
Query: 160 AIKGEGLFEGMDWL 173
A GEGL EGM+W+
Sbjct: 158 AKTGEGLQEGMNWV 171
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 157 bits (397), Expect = 3e-49
Identities = 73/147 (49%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L+ E + IPTIGFNVETV+Y N+KF +WD+GG+ +RP W+ Y+ NT+AV++V+DSS
Sbjct: 18 KLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSS 77
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWA 154
DR+ A E +L E+EL+ A+ LIFANKQD+ GAL ++E L LHK+ R W
Sbjct: 78 HRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWY 137
Query: 155 IFKTCAIKGEGLFEGMDWLSNTLKSGG 181
I A G GL+EG+DWLS L + G
Sbjct: 138 IQGCDARSGMGLYEGLDWLSRQLVAAG 164
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 7e-47
Identities = 59/137 (43%), Positives = 87/137 (63%), Gaps = 2/137 (1%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94
+L+ E+V+TIPT+GFNVE +Q ++ VWD+GGQ +R W+CY NT+ ++YVVDS
Sbjct: 18 KLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77
Query: 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQW 153
SD R+ +++E IL+ E +KG ++ ANKQDLPGAL ++ +L K +R W
Sbjct: 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDW 137
Query: 154 AIFKTCAIKGEGLFEGM 170
+ A+ GEGL E
Sbjct: 138 YVQPCSAVTGEGLAEAF 154
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 3e-44
Identities = 60/144 (41%), Positives = 88/144 (61%), Gaps = 6/144 (4%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNN-----IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90
RL+ E V+T+PT GFN E ++ + + F WD+GGQ +RP W+ Y T+ +++
Sbjct: 22 RLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81
Query: 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN 150
VVDS D +R++ AK E H I + E +G L+ ANKQDLP AL + V + L LH++ +
Sbjct: 82 VVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNALPVSEVEKLLALHELSS 141
Query: 151 -RQWAIFKTCAIKGEGLFEGMDWL 173
W + CAI GEGL EG++ L
Sbjct: 142 STPWHVQPACAIIGEGLQEGLEKL 165
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 4e-44
Identities = 54/133 (40%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKE 105
+PT+GFNVE+ + N+ F +D+ GQ R W Y+ N + +I+V+DSSD R+ AK+
Sbjct: 30 VPTVGFNVESFKKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKD 89
Query: 106 EFHAILEEEELKGAVA--LIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163
E +L ++K L +ANK DLP AL +++ L L IK++ W IF + A+ G
Sbjct: 90 ELELLLNHPDIKHRRIPILFYANKMDLPDALTAVKITQLLCLENIKDKPWHIFASSALTG 149
Query: 164 EGLFEGMDWLSNT 176
EGL EG+DWL
Sbjct: 150 EGLDEGVDWLQAQ 162
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 5e-37
Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 12/162 (7%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G L+ + +PT+ E + N+KF +DLGG R W+ YFP
Sbjct: 27 LDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVKFTTFDLGGHEQARRVWKDYFPE 86
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
+ ++++VD++D +R Q +KEE ++L +EEL LI NK D PGA+ + + EAL
Sbjct: 87 VDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDKPGAVSEEELREALG 146
Query: 145 LHK------------IKNRQWAIFKTCAIKGEGLFEGMDWLS 174
L+ R +F +K +G EG WLS
Sbjct: 147 LYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGFRWLS 188
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-36
Identities = 50/132 (37%), Positives = 75/132 (56%)
Query: 42 VVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
TIPT+GFN+ V N+ +VWDLGGQ R W Y A++YVVD++D ++++
Sbjct: 25 SEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLE 84
Query: 102 TAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161
AK E H +LE+ L+G L+ NK DLPGAL + E + L I +R+ + + A
Sbjct: 85 VAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISAK 144
Query: 162 KGEGLFEGMDWL 173
+ + +DWL
Sbjct: 145 EKTNIDIVLDWL 156
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-35
Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 47 PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEE 106
PT+G N+ T++ + WDLGGQ +R W Y+ + VIYV+DS+D +R +K
Sbjct: 37 PTVGLNIGTIEVGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSA 96
Query: 107 FHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE--LHKIKNRQWAIFKTCAIKGE 164
F ++ E L+G L+ ANKQDLP AL A + E + + I R + A++GE
Sbjct: 97 FEKVINNEALEGVPLLVLANKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGE 156
Query: 165 GLFEGMDWLS 174
G+ EG++WL
Sbjct: 157 GVEEGIEWLV 166
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 3e-25
Identities = 53/160 (33%), Positives = 76/160 (47%), Gaps = 9/160 (5%)
Query: 23 FFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
+DN G LQ PT+GF ++ + + ++DLGG + R W Y+
Sbjct: 5 VGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYY 64
Query: 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA 142
+++VVDSSD DR+Q KE +L+ + G L+ ANKQD AL A V E
Sbjct: 65 AEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEY 124
Query: 143 LELHKIKNRQWA---IFKTCAIKGEG------LFEGMDWL 173
L L K+ N + I AI+G G + EG+ WL
Sbjct: 125 LSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 3e-24
Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTA 103
S +PT GFN + + ++ ++GG ++R YW+ Y ++ +I+VVDS+D++R+ A
Sbjct: 27 SVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLA 86
Query: 104 KEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN-RQWAIFKTCAI 161
++E H +L+ +L ++ ANKQDLP A + + LEL I R+W + T
Sbjct: 87 RQELHQLLQHPPDLP---LVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLD 143
Query: 162 K 162
Sbjct: 144 D 144
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 6e-23
Identities = 51/157 (32%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G L+ + PT E + NIKF +DLGG R W+ YFP
Sbjct: 25 LDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPE 84
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
++Y+VD+ D +R +K E A+L +EEL LI NK D P A + + AL
Sbjct: 85 VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALG 144
Query: 145 LH-------KIKNRQWAIFKTCAIKGEGLFEGMDWLS 174
L K+ R +F ++ G EG WLS
Sbjct: 145 LTNTTTGKGKVGVRPVEVFMCSVVRRMGYGEGFKWLS 181
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 2e-14
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+E + N IK Q+WD GQ R Y+ ++ V DS+ +
Sbjct: 39 GNLDPAKTIEPYRRN-IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELT 97
Query: 105 EEFHAILEEEELKGAVALIFANKQDLPGALD 135
EE+ L E L+ NK DL
Sbjct: 98 EEWLEELRELAPDDVPILLVGNKIDLFDEQS 128
|
Length = 219 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-14
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 47 PTIGFNVETVQY--NNIKFQVWDLGGQTSIRPYWRC-----YFPNTEAVIYVVDSSDTDR 99
T +V + +K + D G R + ++ VVDS+D +
Sbjct: 31 TTRDPDVYVKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRES 90
Query: 100 IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159
+ AK L +E + ++ NK DL + + EL KI +F+
Sbjct: 91 EEDAKLLILRRLRKEGIP---IILVGNKIDLLEEREVEELLRLEELAKILGVP--VFEVS 145
Query: 160 AIKGEGLFEGMDWL 173
A GEG+ E + L
Sbjct: 146 AKTGEGVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 6e-12
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 21 FSFFIDNFGNLC-------DTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTS 73
+F+DN + D D L+ + + T G + +KF+++D+GGQ S
Sbjct: 126 AKYFLDNLDRIASPDYVPTDQDILR-----ARVKTTGIIETKFDFKGLKFRLFDVGGQRS 180
Query: 74 IRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEELKGAVALI 123
R W F + A+I+VV S+ T+R++ + F I K ++
Sbjct: 181 ERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEESLNLFEEICNSPWFKNTPIIL 240
Query: 124 FANKQDL 130
F NK+DL
Sbjct: 241 FLNKKDL 247
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-11
Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 9/130 (6%)
Query: 42 VVSTIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97
+ P N T ++ + KF + D GQ R Y+ E+ + V D
Sbjct: 28 ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVIL 87
Query: 98 -DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIF 156
++ E+ + G ++ NK DL A A K+ I
Sbjct: 88 VLDVEEILEKQTKEIIHHAESGVPIILVGNKIDLRDAKLKT--HVAFLFAKLNGE--PII 143
Query: 157 KTCAIKGEGL 166
A G+ +
Sbjct: 144 PLSAETGKNI 153
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-11
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 10/136 (7%)
Query: 48 TIGFNVETVQYNNIKFQVW--DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKE 105
T+ + +++ + V GQ + W I +VDSS T
Sbjct: 54 TVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP---IT-FH 108
Query: 106 EFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165
I ++ NKQDL AL + EAL+L + + A +GEG
Sbjct: 109 AEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLE---LLSVPVIEIDATEGEG 165
Query: 166 LFEGMDWLSNTLKSGG 181
+ +D L G
Sbjct: 166 ARDQLDVLLLKDLLGS 181
|
Length = 187 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNI----KFQVWDLGGQTSIRPYWRCYFPNTE-AVIY 90
+L G+V ST+ +I NV Y+N K + D+ G +R Y + A+++
Sbjct: 19 KLTTGKVRSTVTSIEPNV-ASFYSNSSKGKKLTLVDVPGHEKLRDKLLEYLKASLKAIVF 77
Query: 91 VVDSSDTDR-IQTAKEEFHAIL-EEEELKGAVA-LIFANKQDLPGALDDAAVSEAL--EL 145
VVDS+ + I+ E + IL + E++K + LI NKQDL A + E L E+
Sbjct: 78 VVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLFTAKPAKKIKELLEKEI 137
Query: 146 HKIK 149
+ ++
Sbjct: 138 NTLR 141
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-06
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 22 SFFIDNFGNLCDTDRL--QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79
S+F+DN + D D + + + S +PT G + F+++D+GGQ S R W
Sbjct: 143 SYFLDNIDRIGDPDYVPTEQDILRSRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWI 202
Query: 80 CYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129
F N A+I+ V S+ T+R+Q + F +I ++F NK D
Sbjct: 203 HCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262
Query: 130 L 130
L
Sbjct: 263 L 263
|
Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 8e-06
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEE-----EELKGAVALIFANKQDLPGALDDAAV 139
T +++V+D S D E++ I E L ++ NK DL D
Sbjct: 79 TRVLLHVIDLSGEDDP---VEDYETIRNELEAYNPGLAEKPRIVVLNKIDLL---DAEER 132
Query: 140 SEALELHKIKNRQWAIFKTCAIKGEGL 166
E L+ + + +F A+ GEGL
Sbjct: 133 FEKLKELLKELKGKKVFPISALTGEGL 159
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-05
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 22/114 (19%)
Query: 46 IPTIG--FNVETVQYNN--IKFQVWDLGGQ---TSIRPYWRCYFPNTEAVI--YVVDSSD 96
IPTIG F +T++ + +K Q+WD GQ ++RP Y+ + + Y + S D
Sbjct: 29 IPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPL---YYRGAQGFLLVYDITSRD 85
Query: 97 T-DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS--EALELHK 147
+ + ++ EE +E ++ NK DL D VS E L K
Sbjct: 86 SFENVKKWLEEILRHADE----NVPIVLVGNKCDL---EDQRVVSTEEGEALAK 132
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-05
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 47 PTIGFNVETVQYN-NIKFQVWDLGGQTSI-RPYWR----CYFPNTEAVIYVVDSSDTDRI 100
TI V++ N+ +WD GQ Y F N +IYV D +
Sbjct: 33 ATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE-Y 91
Query: 101 QTAKEEFHAILE 112
+ I+E
Sbjct: 92 EEDLATLVKIIE 103
|
GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-05
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 20/106 (18%)
Query: 47 PTIG--FNVETVQYNN--IKFQVWDLGGQT---SIRPYWRCYFPNTEAVIYVVDSSDTDR 99
TIG F +TV ++ +KF++WD GQ S+ P Y+ A I V D + +
Sbjct: 32 STIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPM---YYRGAAAAIVVYDITSEES 88
Query: 100 IQTAK---EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA 142
+ AK +E + +AL NK DL VS
Sbjct: 89 FEKAKSWVKELQEHGPPNIV---IALA-GNKADL---ESKRQVSTE 127
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding) | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-05
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD--------- 96
+ T G N+KF+++D+GGQ S R W F + A+I+VV S+
Sbjct: 146 VKTTGIIETDFSIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDE 205
Query: 97 -TDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
+R+Q + + F +I ++F NK+DL
Sbjct: 206 SVNRMQESLKLFDSICNSRWFANTSIILFLNKKDL 240
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 6e-05
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 48 TIG--FNVETVQYNNIKF--QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTA 103
TIG F +E + + F Q+WD GQ + Y+ +A+I V D +D ++
Sbjct: 32 TIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT 91
Query: 104 KEEFHAILEEEELKGAVALIFANKQDL-PGALDDAAVSEALELHK-IKNRQWAIFKTCAI 161
++ L+E + + + K+DL A +A++L + +K WA+ A+
Sbjct: 92 RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAREMKAEYWAV---SAL 148
Query: 162 KGEGL 166
GE +
Sbjct: 149 TGENV 153
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-05
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + +K Q+WD GQ R Y+ +I V D +D +
Sbjct: 30 SYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES 89
Query: 100 IQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
K+ I + + L+ NK DL
Sbjct: 90 FNNVKQWLQEI-DRYASENVNKLLVGNKCDLT 120
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 9e-05
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + TV+ N +K Q+WD GQ R Y+ T VI V D ++ +
Sbjct: 34 SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES 93
Query: 100 IQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
K I E+ ++ NK D P
Sbjct: 94 FVNVKRWLQEI--EQNCDDVCKVLVGNKNDDP 123
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 1e-04
Identities = 43/151 (28%), Positives = 56/151 (37%), Gaps = 31/151 (20%)
Query: 27 NFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRP----- 76
N G C T R G T TIG F TV+ + IK Q+WD GQ R
Sbjct: 12 NVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQH 71
Query: 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEELKGAVALI----FANKQD 129
Y+R N AV++V D T FH++ +EE E + NK D
Sbjct: 72 YYR----NVHAVVFVYDV-------TNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCD 120
Query: 130 LPGALDDAAVSEALELHKIKNRQWAIFKTCA 160
L + V L +F+T A
Sbjct: 121 L---REQIQVPTDLAQRFADAHSMPLFETSA 148
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 30/140 (21%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQ---TSIRPYWRCYFPNTEAVIYVVDSSD 96
+ TIG F +T++ + +K Q+WD GQ SI Y+ I V D ++
Sbjct: 28 NYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRSITSS---YYRGAHGAILVYDVTN 84
Query: 97 TDRIQTAKEEFHAI------LEEEELKGAVALIFANKQDLPGALDDAAVS--EALELHKI 148
+E F + L+E ++ NK DL D+ VS EA + K
Sbjct: 85 -------RESFENLDKWLNELKEYAPPNIPIILVGNKSDLE---DERQVSTEEAQQFAKE 134
Query: 149 KNRQWAIFKTCAIKGEGLFE 168
+ F+T A GE + E
Sbjct: 135 NGLLF--FETSAKTGENVDE 152
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 2e-04
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 48 TIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTA 103
TIG F ++TV+ IK Q+WD GQ R + Y+ + A+I D + + +
Sbjct: 39 TIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCL 98
Query: 104 KEEFHAILEEEELKGAVALIFANKQDL 130
E I E+ + ++ NK DL
Sbjct: 99 PEWLREI-EQYANNKVITILVGNKIDL 124
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 18/115 (15%)
Query: 27 NFGNLCDTDRLQMGEVVSTI-PTIG--FNVET--VQYNNIKFQVWDLGGQTSIRPYWRCY 81
N G C R + G TIG F ++T +Q +K Q+WD GQ R + Y
Sbjct: 13 NVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSY 72
Query: 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEELKGA---VALIFANKQDL 130
+ + I D T + F ++ +EE E GA V L+ NK DL
Sbjct: 73 YRSANGAIIAYDI-------TRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 5e-04
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 18/100 (18%)
Query: 44 STIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
TIG F V+TV +K +WD GQ R Y+ + VI V D
Sbjct: 28 DLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDV----- 82
Query: 100 IQTAKEEFHAI---LEEEEL----KGAVALIFANKQDLPG 132
T ++ F + L E + AV ++ NK D
Sbjct: 83 --TRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 8e-04
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEE-----EELKGAVALIFANKQDLPGALDD-AA 138
T +++V+D S ++ + E++ I +E L ++ ANK DLP A ++
Sbjct: 237 TRVIVHVIDMSGSEG-RDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEE 295
Query: 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
E L +F A+ G+GL E + ++ L+
Sbjct: 296 FKEKLGPK--------VFPISALTGQGLDELLYAVAELLEE 328
|
Length = 424 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.002
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D
Sbjct: 31 SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKS 90
Query: 100 IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS 140
+ K I +E + ++ NK D+ + VS
Sbjct: 91 FENIKNWMRNI-DEHASEDVERMLVGNKCDME---EKRVVS 127
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 182 | |||
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 100.0 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 100.0 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 100.0 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 100.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 100.0 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 100.0 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 100.0 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 100.0 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 100.0 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 100.0 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 100.0 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 100.0 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 100.0 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 100.0 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 100.0 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 100.0 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 100.0 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 100.0 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 100.0 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 100.0 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 100.0 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 100.0 | |
| PLN03118 | 211 | Rab family protein; Provisional | 100.0 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.98 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.98 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.98 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.98 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.98 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.98 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.98 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.98 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.98 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.98 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.98 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.98 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.98 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.97 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.97 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.97 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.97 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.97 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.97 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.97 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.97 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.97 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.97 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.97 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.97 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.97 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.97 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.97 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.97 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.97 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.97 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.96 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.96 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.96 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.96 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.96 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.96 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.96 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.96 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.96 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.95 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.95 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.95 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.94 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.94 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.94 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.94 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.93 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.93 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.93 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.93 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.93 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.93 | |
| PTZ00099 | 176 | rab6; Provisional | 99.93 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.92 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.92 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.92 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.92 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.92 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.92 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.92 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.92 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.91 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.91 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.91 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.91 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.91 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.91 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.91 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.91 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.91 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.91 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.91 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.91 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.91 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.9 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.9 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.9 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.9 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.89 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.89 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.89 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.89 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.89 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.88 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.88 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.88 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.88 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.88 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.88 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.88 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.88 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.88 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.88 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.88 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.88 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.88 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.87 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.87 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.87 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.87 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.87 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.87 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.87 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.86 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.85 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.85 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.85 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.85 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.84 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.84 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.84 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.83 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.83 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.83 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.83 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.82 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.82 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.82 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.82 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.82 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.82 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.81 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.81 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.81 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.81 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.81 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.8 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.8 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.8 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.8 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.8 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.8 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.8 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.79 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.78 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.78 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.78 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.77 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.77 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.76 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.76 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.76 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.76 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.75 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.75 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.74 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.74 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.74 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.74 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.74 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.72 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.72 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.72 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.72 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.72 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.72 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.71 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.71 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.71 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.71 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.7 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.7 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.7 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.69 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.68 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.68 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.68 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.68 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.67 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.67 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.66 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.65 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.65 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.65 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.64 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.63 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.63 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.61 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.61 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.6 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.6 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.59 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.57 | |
| PRK13768 | 253 | GTPase; Provisional | 99.57 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.57 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.57 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.54 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 99.54 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.52 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.52 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.51 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.49 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 99.49 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.48 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.47 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.47 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.46 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.45 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.44 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.44 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.43 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.42 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.42 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.41 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.4 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.39 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.38 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.38 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.38 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.37 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.37 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.35 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.35 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.34 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.31 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.31 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.28 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.24 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.22 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.22 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.21 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.18 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.17 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.16 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.14 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.13 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.13 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.11 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.09 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.08 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.07 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.06 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.05 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.01 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.01 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.0 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 98.98 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.98 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 98.97 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.94 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.93 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.93 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.92 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.91 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.89 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.87 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.85 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.85 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.85 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.81 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.79 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.79 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.79 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.78 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.77 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.75 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.69 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.67 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.66 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.66 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.66 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.65 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.65 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.65 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.64 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.63 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.62 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.59 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.58 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.57 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.54 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.53 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.53 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.51 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.48 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.48 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.48 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.42 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.4 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.37 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.37 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.3 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.27 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.26 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.26 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.26 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.25 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.24 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.24 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.24 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.21 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.2 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.16 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.13 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.11 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 98.09 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.08 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.04 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.03 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 98.03 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.02 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.01 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.99 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.97 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.97 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.94 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 97.92 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.88 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.87 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 97.86 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.86 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.85 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.84 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.83 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.82 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.81 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.81 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 97.81 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.8 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.79 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.77 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.75 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.75 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.72 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.7 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.69 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.68 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.68 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.68 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.67 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 97.65 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.65 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.64 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.6 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.59 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.59 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.58 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.56 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.55 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.55 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.53 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.53 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.53 | |
| KOG4273 | 418 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.52 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.51 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.51 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.49 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.49 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.49 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.48 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.45 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 97.44 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.43 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 97.43 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.42 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 97.42 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.41 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.41 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.4 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.39 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.39 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.37 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.37 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.37 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.36 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.36 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 97.35 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.35 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 97.33 | |
| PLN02200 | 234 | adenylate kinase family protein | 97.33 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.32 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.31 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 97.31 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.31 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.31 | |
| PRK02496 | 184 | adk adenylate kinase; Provisional | 97.28 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 97.26 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.26 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 97.26 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.26 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.25 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 97.25 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.24 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.22 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.22 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.21 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.2 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.19 | |
| PRK05057 | 172 | aroK shikimate kinase I; Reviewed | 97.19 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.18 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.18 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 97.17 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 97.17 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 97.17 | |
| PRK00279 | 215 | adk adenylate kinase; Reviewed | 97.17 | |
| PRK14529 | 223 | adenylate kinase; Provisional | 97.16 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.15 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 97.15 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 97.15 | |
| PRK14528 | 186 | adenylate kinase; Provisional | 97.15 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.14 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.13 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.13 | |
| PLN02459 | 261 | probable adenylate kinase | 97.12 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.12 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 97.12 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.11 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 97.1 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.09 |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=216.40 Aligned_cols=162 Identities=19% Similarity=0.224 Sum_probs=138.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|+.|+|||||+.||..+.|.+ +..|+|++.....+ +.+++++|||+||++|+....+||++||++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 456899999999999999999999999999 99999966655444 7789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-HHHHhhcccccCCCceE-EEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA-AVSEALELHKIKNRQWA-IFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 167 (182)
+|||+++.+||..+..|+.++..+. ..++|.++|+||||+.+..... +..+. +....+++ ++++||+++.+++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~----fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQE----FADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHH----HHHhcCCcceeecccCCccCHH
Confidence 9999999999999999999997765 4678999999999998764331 22222 22334445 9999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 030122 168 EGMDWLSNTLKSGG 181 (182)
Q Consensus 168 ~~~~~l~~~i~~~~ 181 (182)
+.|..+...+++++
T Consensus 162 ~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 162 DAFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999888654
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=210.67 Aligned_cols=168 Identities=18% Similarity=0.239 Sum_probs=144.9
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCC
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~ 84 (182)
....+.+..|++|+|+.++|||||++|++.+.|.. +.+|+|++...... ..+++++|||+|||+|+.+.+.|+++
T Consensus 15 ~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd 94 (221)
T KOG0094|consen 15 TFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 94 (221)
T ss_pred ccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC
Confidence 34556677999999999999999999999999988 99999966655444 67899999999999999999999999
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+.++|+|||+++..||+...+|+.+++..+...++-+++|+||.|+.+... +....+....++.+..|.++||+.|.
T Consensus 95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq---vs~eEg~~kAkel~a~f~etsak~g~ 171 (221)
T KOG0094|consen 95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ---VSIEEGERKAKELNAEFIETSAKAGE 171 (221)
T ss_pred CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhh---hhHHHHHHHHHHhCcEEEEecccCCC
Confidence 999999999999999999999999999988777799999999999997643 33333334445666679999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
||+++|..+..++.+.
T Consensus 172 NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 172 NVKQLFRRIAAALPGM 187 (221)
T ss_pred CHHHHHHHHHHhccCc
Confidence 9999999988877654
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=213.68 Aligned_cols=166 Identities=51% Similarity=0.935 Sum_probs=147.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++..+.+..+.||.+++...+.+..+.+.+||++|+++++.+|..+++++|++|+|||+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~ 94 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence 45689999999999999999999988887788999988888888899999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++++++.+..++..++......++|+++++||+|+......+++.+.++......+.+.++++||++|+|+.++|+||.
T Consensus 95 s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred CcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence 99999999998888887655456899999999999988777778888887766666677788999999999999999999
Q ss_pred HHHhcC
Q 030122 175 NTLKSG 180 (182)
Q Consensus 175 ~~i~~~ 180 (182)
+.+.++
T Consensus 175 ~~~~~~ 180 (181)
T PLN00223 175 NNIANK 180 (181)
T ss_pred HHHhhc
Confidence 988764
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=209.14 Aligned_cols=159 Identities=23% Similarity=0.290 Sum_probs=136.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|..++|||||+.|+..++|.+ ..||+| +...++.+ ..++|.||||+|+++|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 356899999999999999999999999999 799999 55555666 4599999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||+++.+||..+..|++++..... +++-+.+|+||+|+.+.+. .++. ...+.+.+..++++||++|.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea-----~~yAe~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEA-----QAYAESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHH-----HHHHHhcCCEEEEEecccccCHH
Confidence 99999999999999999999977654 7888999999999987332 2222 12223455679999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|..|.+.+..
T Consensus 157 ~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 157 EIFQAIAEKLPC 168 (200)
T ss_pred HHHHHHHHhccC
Confidence 999999998764
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=209.89 Aligned_cols=164 Identities=54% Similarity=0.943 Sum_probs=145.2
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++..+.+..+.||++++...+.+..+.+.+||++|+++++.+|..+++++|++|+|||+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~ 90 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 34689999999999999999999888876688999988777778889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++++++....|+..++......++|+++|+||+|+.+....+++.+.++....+.+.+.++++||++|.|++++|+||.
T Consensus 91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999887665446799999999999987666777877777776666778888999999999999999998
Q ss_pred HHHh
Q 030122 175 NTLK 178 (182)
Q Consensus 175 ~~i~ 178 (182)
+.+.
T Consensus 171 ~~~~ 174 (175)
T smart00177 171 NNLK 174 (175)
T ss_pred HHhc
Confidence 7754
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=208.13 Aligned_cols=160 Identities=46% Similarity=0.907 Sum_probs=140.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
..+||+++|++|||||||++++..+.+..+.||.+.+...+.+..+.+.+||++|+++++.++..+++++|++|+|||++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t 87 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSA 87 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCC
Confidence 35899999999999999999999888767888999877777778899999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++.+|+.+..|+..++......++|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|+||.+
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 88 DRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred chhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 99999999999988877654567999999999999876666777777666555556678999999999999999999864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=205.27 Aligned_cols=158 Identities=54% Similarity=0.972 Sum_probs=138.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
+||+++|.+|||||||++++..+.+..+.||+++....+.+..+.+.+||++|+++++.+|..+++++|++++|||++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999888887788999987777778889999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
.+++.+..|+..++......+.|+++++||+|+.+....+++...+.......+.+.++++||++|.|++++|+||.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999999888876544467899999999999765555666666666655666778899999999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=205.62 Aligned_cols=163 Identities=44% Similarity=0.824 Sum_probs=152.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
.+++||+++|++||||||+++++..+......||.|++...+.+.+..+.+||.+|+..+++.|+.|+.++|++|||+|.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDs 91 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDS 91 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEET
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEec
Confidence 66789999999999999999999988877799999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccC-CCceEEEEecccCCCCHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK-NRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
++.+++.+....+..++......++|+++++||+|+.+....+++...+.+.... .+.+.++.||+.+|+|+.+.|+||
T Consensus 92 sd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL 171 (175)
T PF00025_consen 92 SDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWL 171 (175)
T ss_dssp TGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHH
T ss_pred ccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHH
Confidence 9999999999999999988777899999999999999988888999888888776 788999999999999999999999
Q ss_pred HHHH
Q 030122 174 SNTL 177 (182)
Q Consensus 174 ~~~i 177 (182)
.+++
T Consensus 172 ~~~~ 175 (175)
T PF00025_consen 172 IEQI 175 (175)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=207.66 Aligned_cols=166 Identities=49% Similarity=0.892 Sum_probs=145.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++..+.+..+.||.+.+...+....+.+.+||++|+++++.+|..+++++|++|+|+|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~ 94 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDS 94 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 34589999999999999999999988887778899988777778889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
++++++.....++..++......++|+++|+||.|+.+....+++...++......+.+.++++||++|.|++++|+||.
T Consensus 95 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 95 NDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred CCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 99999999998888887654456789999999999987666677777777776666777888999999999999999999
Q ss_pred HHHhcC
Q 030122 175 NTLKSG 180 (182)
Q Consensus 175 ~~i~~~ 180 (182)
+.+..+
T Consensus 175 ~~i~~~ 180 (182)
T PTZ00133 175 ANIKKS 180 (182)
T ss_pred HHHHHh
Confidence 877654
|
|
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=194.46 Aligned_cols=166 Identities=41% Similarity=0.749 Sum_probs=156.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
.+++++|+++|+.||||||++++|.+.+.....||.|++.+++.++++.+++||++||..+++.|++||+.+|++|+|+|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvD 92 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVD 92 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEE
Confidence 45689999999999999999999999887779999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEecccCCCCHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
.+++.++++....+..++......+.|+++++||.|++.+...+++...+.+... +...++++.||+.+|+++.+.++|
T Consensus 93 ssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidW 172 (185)
T KOG0073|consen 93 SSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDW 172 (185)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHH
Confidence 9999999999998888888777788999999999999998889999999988887 888999999999999999999999
Q ss_pred HHHHHhc
Q 030122 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~i~~ 179 (182)
+++.+.+
T Consensus 173 L~~~l~~ 179 (185)
T KOG0073|consen 173 LCDDLMS 179 (185)
T ss_pred HHHHHHH
Confidence 9998765
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=204.87 Aligned_cols=165 Identities=19% Similarity=0.238 Sum_probs=140.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
.+...-+||+++|++|||||||+.+|..+.|.. +..|+|++.+. +.. ..+.+++|||+||++|+.+...|++.|+
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 367778999999999999999999999999988 89999966554 444 6789999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++++|||+++..||+.+..|++.+-+.. ..++|.++|+||+|+...+. +....+...+...++.+++|||++|.||
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~---V~~e~ge~lA~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEKRQ---VSKERGEALAREYGIKFFETSAKTNFNI 162 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeecccccccccc---ccHHHHHHHHHHhCCeEEEccccCCCCH
Confidence 9999999999999999999999986665 45999999999999987432 2222333333445677999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
.+.|-.|++.++.+
T Consensus 163 ~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 163 EEAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998853
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=198.08 Aligned_cols=169 Identities=53% Similarity=0.915 Sum_probs=161.0
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.....+.+|+++|..++||||++++|..+++....||+|++...+.++++.|.+||.+|+++++++|..|+++.+++|||
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV 91 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence 45677899999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+|.++++++.++..-+..++......+.|+++++||.|++++....++.+.+.+..++++...+..|||.+|+|+.+.++
T Consensus 92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~ 171 (181)
T KOG0070|consen 92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLD 171 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHH
Confidence 99999999999999999998888778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 030122 172 WLSNTLKSG 180 (182)
Q Consensus 172 ~l~~~i~~~ 180 (182)
|+...+..+
T Consensus 172 wl~~~~~~~ 180 (181)
T KOG0070|consen 172 WLSNNLKKR 180 (181)
T ss_pred HHHHHHhcc
Confidence 999988765
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=200.34 Aligned_cols=162 Identities=46% Similarity=0.802 Sum_probs=138.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
||+++|++|||||||++++.+..+..+.||.+.....+.+..+.+.+||+||+++++.+|..+++++|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999988777889999888778888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
+++.+..|+..++......+.|+++|+||+|+.+....+++......... ..+.+.++++||++|.|++++|+||.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999987654567899999999999866565666555433322 23345788999999999999999999887
Q ss_pred hcC
Q 030122 178 KSG 180 (182)
Q Consensus 178 ~~~ 180 (182)
.+.
T Consensus 161 ~~~ 163 (169)
T cd04158 161 VAA 163 (169)
T ss_pred hhc
Confidence 653
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=200.34 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=140.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....+||+++|++|+|||||++++.+.+|.. +..|+| +..+.+.+ .-+.++||||+|+++|+++.-.+++++|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 4567899999999999999999999999998 999999 44444444 567899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCC---CCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEecccCCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEEL---KGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 164 (182)
++|||++++.||+.+..|..+.+..+.. ...|+++++||+|+.+... ..+....++.++ .++.++||++|||.+.
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~-r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS-RQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc-ceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999998877643 3469999999999976321 233344444555 3578999999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|+.+.|..+.+.++..
T Consensus 165 NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 165 NVDEAFEEIARRALAN 180 (210)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 9999999999988764
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=201.09 Aligned_cols=163 Identities=44% Similarity=0.798 Sum_probs=140.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+....+||+++|++|||||||++++.+..+..+.+|.++....+.+.++.+.+||+||++.++.++..+++++|++++||
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 34456899999999999999999999886666888999888888888899999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++.++.....|+..++......+.|+++|+||+|+......+++...+.........++++++||++|.|++++|+|
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 169 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDW 169 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHH
Confidence 99999999999999888876555578999999999999876666666666655444556788999999999999999999
Q ss_pred HHH
Q 030122 173 LSN 175 (182)
Q Consensus 173 l~~ 175 (182)
++.
T Consensus 170 l~~ 172 (173)
T cd04154 170 LVD 172 (173)
T ss_pred Hhc
Confidence 864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=207.14 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=127.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+.|+++|+.|||||||++++..+.|.+ +.+|++.. ...+.+. .+.+.+|||+|+++|+.++..|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 368999999999999999999999977 78888744 4456664 488999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|+++++||+.+..|+..+.+. ...++|+++|+||+|+...... .+....+.. ...++.+++|||++|.|++++|.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~---~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQ---QITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH---hcCCCEEEEecCCCCCCHHHHHH
Confidence 999999999999998876544 3467999999999999653321 111111111 11245699999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
++++.+.+
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99988764
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=205.52 Aligned_cols=158 Identities=17% Similarity=0.185 Sum_probs=130.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|.+|+|||||+++|.++.+.. +.++.+... ..+.+. .+.+.+||++|+++|+.++..+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999988866 667777443 444543 4889999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||++++.+|+.+..|+..+.... ++.|+++|+||+|+..... .++.. . .++..++++++|||++|.|+++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~-~----~a~~~~~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQ-A----YAERNGMTFFEVSPLCNFNITE 157 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHH-H----HHHHcCCEEEEecCCCCCCHHH
Confidence 999999999999999999996654 6899999999999965322 22221 1 2233456799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030122 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 ~~~~l~~~i~~~ 180 (182)
+|+++++.+..+
T Consensus 158 ~F~~l~~~i~~~ 169 (189)
T cd04121 158 SFTELARIVLMR 169 (189)
T ss_pred HHHHHHHHHHHh
Confidence 999999877643
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=201.99 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=131.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+||+++|.+|||||||++++.++.+.. +.||++... ..+.+ ..+.+.+||++|+++++.++..++..+|++|+||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 4799999999999999999999999876 788887333 34455 3478999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++.+|+.+..|+..+.......++|+++|+||+|+........ .......+..++++++|||++|.|++++|++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~---~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTT---EEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCH---HHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 9999999999998887776544446899999999999865432211 1111222334568999999999999999999
Q ss_pred HHHHHhcCC
Q 030122 173 LSNTLKSGG 181 (182)
Q Consensus 173 l~~~i~~~~ 181 (182)
+++.+.+..
T Consensus 159 l~~~~~~~~ 167 (172)
T cd04141 159 LVREIRRKE 167 (172)
T ss_pred HHHHHHHhc
Confidence 998887543
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=192.21 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=142.5
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||++||..|+|||||+.+|..+.|.+ ...|+| +..+.+.+ ..+++.||||+|+++|+.+.+.||+++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 345566899999999999999999999999999 555588 44455555 6789999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++|+|||++.+++|..+..|++++-.+....++-.++|+||+|.... ..+....++.+++...+.++++||++.+|+
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTRENV 162 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhhccH
Confidence 99999999999999999999999877766678899999999997643 244555566666778888999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
..+|+.++..+.+.
T Consensus 163 ~~~FeelveKIi~t 176 (209)
T KOG0080|consen 163 QCCFEELVEKIIET 176 (209)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998764
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=197.75 Aligned_cols=160 Identities=46% Similarity=0.791 Sum_probs=140.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
...||+++|++|+|||||++++..+.+..+.||.+.+...+.+..+.+.+||+||++.++..|..+++++|++++|+|++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s 93 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDST 93 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECC
Confidence 35799999999999999999999988877888988877788888899999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
+++++.....++..+++.....++|+++++||+|+......+++.+.+.....++..++++++||++|.|++++|+||.+
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 94 DRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 99999988888888876655567999999999999876566777777766555566778999999999999999999975
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=200.80 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=128.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|+|||||+.++..+.|.. +.||++... ..+.. ..+.+.+|||+|+++++.++..+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 699999999999999999999999987 889987333 23344 45889999999999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-------HHHHHHhhcccccCCCce-EEEEecccCCC
Q 030122 94 SSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD-------DAAVSEALELHKIKNRQW-AIFKTCAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (182)
+++++||+.+ ..|+..+.... .+.|+++|+||+|+.+... ...+.........+..++ .+++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 58998886654 5799999999999965321 001112222222233344 59999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+.+++.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987643
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=193.94 Aligned_cols=157 Identities=70% Similarity=1.131 Sum_probs=135.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
||+++|++|+|||||++++..+.+....||++++...+.+.+..+.+||+||++.++.+|..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998888777788888877778788899999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++.....++..+++.....++|+++|+||+|+.+.....++...+.....+....+++++||++|.|++++|+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88887777777665544568999999999999866555666666655555555678999999999999999999975
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=202.02 Aligned_cols=162 Identities=16% Similarity=0.142 Sum_probs=129.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|+|||||++++..+.+.+ +.||++... ..+.+ ..+.+.+|||+|+++|+.+++.+++++|++++|
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilv 83 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 83 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEE
Confidence 46899999999999999999999999877 888987333 33444 467899999999999999999999999999999
Q ss_pred EeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---------HHHHHHhhcccccCCCc-eEEEEecc
Q 030122 92 VDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKIKNRQ-WAIFKTCA 160 (182)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~Sa 160 (182)
||++++.||+.+ ..|+..+.... ++.|+++|+||+|+.+... ...+....+...++..+ ++|++|||
T Consensus 84 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 84 FDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 999999999997 68888886653 5799999999999864210 00111122222333444 37999999
Q ss_pred cCCCC-HHHHHHHHHHHHhc
Q 030122 161 IKGEG-LFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~-i~~~~~~l~~~i~~ 179 (182)
++|.| ++++|..+++++.+
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999987654
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=195.92 Aligned_cols=157 Identities=32% Similarity=0.510 Sum_probs=137.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
+|+++|++|||||||++++.+.....+.||.++....+.+..+.+++||++|++.++.+|..+++++|++|+|||++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999773333889999888888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccC---CCceEEEEecccCC------CCHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK---NRQWAIFKTCAIKG------EGLFEG 169 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~i~~~ 169 (182)
+++.+..|+..++......++|+++|+||+|+.......++.+.+...... ...+.++++||++| .|+.+.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999998876555689999999999998877777777777665542 24578889999998 899999
Q ss_pred HHHHHH
Q 030122 170 MDWLSN 175 (182)
Q Consensus 170 ~~~l~~ 175 (182)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=193.46 Aligned_cols=157 Identities=36% Similarity=0.658 Sum_probs=132.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC-cc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV-VS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~-~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 96 (182)
+|+++|++|||||||++++.+..+ .. +.||.++....+....+.+.+||+||+++++.+|..+++++|++|+|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 33 7899997777777788999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 97 TDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+.++.....|+..++.... ..++|+++|+||+|+.+....+++...+.........+.++++||++|.|++++|+||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9999988888888766432 25799999999999987655566666655544344456799999999999999999987
Q ss_pred H
Q 030122 175 N 175 (182)
Q Consensus 175 ~ 175 (182)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=194.32 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=137.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+|++++|+.|+|||+|+.||+...|.+ ...|+|++. ..+.+ +.+++++|||+|++.|++....|++.+.++++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 45899999999999999999999999998 888998444 44444 78999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|||+++.+||..+..|+.++.+.. ..++-+++++||+|+...+ ++.++.+..++++.+..++++||++++|+++.|
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 999999999999999999998874 4799999999999998654 334444444555566669999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
....+.+..
T Consensus 161 ~nta~~Iy~ 169 (216)
T KOG0098|consen 161 INTAKEIYR 169 (216)
T ss_pred HHHHHHHHH
Confidence 888877653
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=201.90 Aligned_cols=161 Identities=14% Similarity=0.160 Sum_probs=127.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+||+++|+.|||||||++++..+.+.+ +.||++.... .+.+ ..+.+.+|||+|+++|+.+++.+++++|++|+||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 4899999999999999999999999876 8899884333 2333 4588999999999999999999999999999999
Q ss_pred eCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHH--------hhcccccCCCc-eEEEEeccc
Q 030122 93 DSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSE--------ALELHKIKNRQ-WAIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~Sa~ 161 (182)
|+++++||+.+. .|...+.... .++|+++|+||+|+.+.... +.+.+ ..+....+..+ ++++++||+
T Consensus 83 dit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 83 SIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 999999999997 5777665432 58999999999999654221 11111 11111122233 579999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030122 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~ 179 (182)
+|.|++++|.++++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988764
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=202.61 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=132.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|.+|||||||+++++.+.+.. +.+|++.......+ ..+.+.+||++|++++..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 667899999999999999999999998877 89999866555443 4589999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+|||++++++|+.+..|+..+.... .++|+++|+||+|+..... .+++ . ..+...++|+++||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~--~----~~~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV--T----FHRKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH--H----HHHhcCCEEEEcCCCCCCCHHH
Confidence 9999999999999999999987653 6899999999999864321 2222 1 1123456799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030122 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 ~~~~l~~~i~~~ 180 (182)
+|.|+++.+.+.
T Consensus 163 ~f~~l~~~~~~~ 174 (219)
T PLN03071 163 PFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHcC
Confidence 999999888643
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=180.77 Aligned_cols=166 Identities=46% Similarity=0.885 Sum_probs=157.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
..++++|+.+|..++||||++.+|+-+......||.|++++++.++.+.|.+||++|+++.+++|.+||.+..++|||+|
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~D 93 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 93 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEe
Confidence 44578999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
..+.++++++..-++.++..+...+.|+++.+||.|++++..+.++.+.+.++..+.+...+..+|+.+|+|+.+-|.|+
T Consensus 94 sa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswl 173 (180)
T KOG0071|consen 94 SADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWL 173 (180)
T ss_pred ccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 030122 174 SNTLKS 179 (182)
Q Consensus 174 ~~~i~~ 179 (182)
..-+..
T Consensus 174 snn~~~ 179 (180)
T KOG0071|consen 174 SNNLKE 179 (180)
T ss_pred HhhccC
Confidence 876543
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=195.44 Aligned_cols=164 Identities=38% Similarity=0.683 Sum_probs=135.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|||||||++++..+.+....||.++....+.+ .++.+.+|||+|+++++.+|..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999998887777888765555444 46899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|+|++++.+++.+..|+..+.......++|+++|+||+|+......+++......... ....++++++||++|.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999999999999888888876554568999999999999765555555544443322 223467899999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|++|.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=203.73 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=131.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
+....+||+++|++|||||||+++|.++.|.. +.||++..+. .+.+ ..+.+.+|||+|+++|+.+++.+++++|++
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 44567899999999999999999999999887 8899874432 2333 568899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---------HHHHHHhhcccccCCCce-EEEE
Q 030122 89 IYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKIKNRQW-AIFK 157 (182)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~ 157 (182)
|+|||++++++|+.+ ..|+..+.... .+.|+++|+||+|+..... ...+....+...++..++ .|++
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999985 78888887643 5789999999999864210 011111222223334455 6999
Q ss_pred ecccCCC-CHHHHHHHHHHHHhcC
Q 030122 158 TCAIKGE-GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 158 ~Sa~~~~-~i~~~~~~l~~~i~~~ 180 (182)
|||++|. |++++|..++..+.+.
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHh
Confidence 9999998 8999999999887653
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=198.76 Aligned_cols=160 Identities=17% Similarity=0.126 Sum_probs=126.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
++||+++|++|+|||||++++.++.+.. +.||++... ..+.+ ..+.+.+|||+|++++..+++.+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 3699999999999999999999999877 888887333 23444 5588999999999999999999999999999999
Q ss_pred eCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---------HHHHHhhcccccCCCce-EEEEeccc
Q 030122 93 DSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDD---------AAVSEALELHKIKNRQW-AIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (182)
|+++++||+.+ ..|+..+.+.. ++.|+++|+||+|+.+.... ..+....+....+..++ ++++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 68888887653 68999999999998642100 01111122222333444 79999999
Q ss_pred CCCC-HHHHHHHHHHHHh
Q 030122 162 KGEG-LFEGMDWLSNTLK 178 (182)
Q Consensus 162 ~~~~-i~~~~~~l~~~i~ 178 (182)
+|+| ++++|..++++..
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998655
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=202.24 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=129.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
+||+++|.+|+|||||+++|.++.+....+|++.......+..+.+.+||++|++.+..++..+++++|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987778888866665566778999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC-------------------CC--HHHHHHhhcccc---------
Q 030122 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-------------------LD--DAAVSEALELHK--------- 147 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~-------------------~~--~~~~~~~~~~~~--------- 147 (182)
++|+.+..|+..+.... ..++|+++|+||+|+.+. .. .++. ..+....
T Consensus 81 ~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~-~~~a~~~~~~~~~~~~ 158 (220)
T cd04126 81 QSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA-KAFYKRINKYKMLDED 158 (220)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH-HHHHHHhCcccccccc
Confidence 99999999988887643 357999999999998651 11 1111 1111110
Q ss_pred -cCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 148 -IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 148 -~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.....++|++|||++|.|++++|.++++.+.
T Consensus 159 ~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 159 LSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0012367999999999999999999998775
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=194.78 Aligned_cols=156 Identities=17% Similarity=0.225 Sum_probs=128.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.++.+.. +.+|.+.... .+.. ..+.+.+||++|++++...+..+++++|++|+||
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 799999999999999999999998877 7778775443 3444 4578899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+..... .++.... ++...++++++||++|.|++++|
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999998875543 35789999999999976432 2222221 12334679999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
.++++.+.+
T Consensus 157 ~~l~~~~~~ 165 (166)
T cd04122 157 LETAKKIYQ 165 (166)
T ss_pred HHHHHHHhh
Confidence 999988754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=194.59 Aligned_cols=162 Identities=31% Similarity=0.504 Sum_probs=141.6
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...++|+++|++|||||||++++.++.+..+.||.+.....+.+.++.+.+||++|+..++.+|..++.++|++++|+|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~ 94 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDA 94 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 44589999999999999999999998776677888877777777889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccC-------CCceEEEEecccCCCCHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK-------NRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~ 167 (182)
++++++.....++..+++.....+.|+++|+||+|+......+++.+.+++.... .+...++.+||++|.|++
T Consensus 95 ~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 174 (184)
T smart00178 95 YDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYG 174 (184)
T ss_pred CcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChH
Confidence 9999999999888888765555789999999999998777788888887765432 256789999999999999
Q ss_pred HHHHHHHHH
Q 030122 168 EGMDWLSNT 176 (182)
Q Consensus 168 ~~~~~l~~~ 176 (182)
++++||...
T Consensus 175 ~~~~wl~~~ 183 (184)
T smart00178 175 EGFKWLSQY 183 (184)
T ss_pred HHHHHHHhh
Confidence 999999865
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=191.24 Aligned_cols=154 Identities=28% Similarity=0.519 Sum_probs=134.5
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
|+++|++|||||||++++.++.+.. +.||.++....+...++.+.+||++|+++++.+|..+++++|++++|||.+++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 7999999999999999999887766 889999877777778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEecccC------CCCHHHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIK------GEGLFEGMD 171 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~i~~~~~ 171 (182)
++.....|+..+.... .++|+++|+||+|+.......++...+..... ++..+.++++||++ ++|++++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 9999999988886553 68999999999999877766666666555444 55678899999998 999999999
Q ss_pred HHHH
Q 030122 172 WLSN 175 (182)
Q Consensus 172 ~l~~ 175 (182)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8763
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=196.53 Aligned_cols=159 Identities=19% Similarity=0.255 Sum_probs=128.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+||+++|++|||||||+++|.++.+.. +.||++.+. ..+.+ ..+.+.+||++|+++++.++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998877 888888543 34444 357899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhcc---CCCCCeEEEEeeCCCCCC--CCCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPG--ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
||++++++|+.+..|+..+.... ...++|+++|+||+|+.+ ....+++.+..... ....++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 99999999999999988775432 236789999999999973 23333333222111 1146999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++|+++++.+.+.
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=191.55 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=126.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||++++.++.+.. +.||.+ .....+.+. .+.+.+||++|+++++.++..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 699999999999999999999988876 677776 333445553 4678899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
++++++|+.+..|+..+.......+.|+++|+||+|+.+.... .+....+. +....+++++||++|.|++++|.+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999999998877655568999999999998653221 11111111 122367999999999999999999
Q ss_pred HHHHH
Q 030122 173 LSNTL 177 (182)
Q Consensus 173 l~~~i 177 (182)
+.+.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98765
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=195.96 Aligned_cols=160 Identities=16% Similarity=0.259 Sum_probs=130.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe------------CCEEEEEEECCCCCCChhhhhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY------------NNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~------------~~~~~~i~d~~g~~~~~~~~~~ 80 (182)
..+||+++|++|||||||++++.++.+.. +.+|++.+.. .+.+ ..+.+.+||++|+++++.++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999877 7888874443 3333 2378999999999999999999
Q ss_pred hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEe
Q 030122 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++++|++++|||++++++|..+..|+..+.......+.|+++|+||+|+.+... .++. ..+ .+..+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KAL----ADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHH----HHHcCCeEEEE
Confidence 9999999999999999999999999999887654446789999999999975432 2222 111 12234579999
Q ss_pred cccCCCCHHHHHHHHHHHHhcC
Q 030122 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
||++|.|++++|+++++.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999877653
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=185.27 Aligned_cols=159 Identities=21% Similarity=0.238 Sum_probs=134.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
-.+||+++|..|+|||||+++|..+-|++ ...|+|+ -++++.+ ++++++||||+|+++|++....|++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 35799999999999999999999999999 8999994 4455555 78999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|||++...+|+.+..|+.++-++. ..++.-|+|+||.|+.+.+ ++.+..+.++.+...+.++++||+..+|++.+|
T Consensus 86 vydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drr---evp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRR---EVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhh---hhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 999999999999999999997765 3677889999999998653 333334434344455679999999999999999
Q ss_pred HHHHHHHh
Q 030122 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~l~~~i~ 178 (182)
..+.-.+.
T Consensus 162 ~~~a~rli 169 (213)
T KOG0095|consen 162 LDLACRLI 169 (213)
T ss_pred HHHHHHHH
Confidence 88765543
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=193.45 Aligned_cols=158 Identities=16% Similarity=0.135 Sum_probs=127.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
++||+++|.+|||||||+++++.+.+.+ +.||++.. ...+.. ..+.+.+|||+|++++..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999888876 77787732 334444 3567889999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|+++..+|+.+..|+..+.......+.|+++|+||+|+...... .+....+. +...++++++||++|.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~~~~ 156 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA----RQWGCAFLETSAKAKINVNEIFY 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH----HHhCCEEEEeeCCCCCCHHHHHH
Confidence 99999999999999999877655578999999999999753221 11111111 12235799999999999999999
Q ss_pred HHHHHHh
Q 030122 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~i~ 178 (182)
++.+.+.
T Consensus 157 ~l~~~l~ 163 (164)
T cd04175 157 DLVRQIN 163 (164)
T ss_pred HHHHHhh
Confidence 9998764
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=189.14 Aligned_cols=157 Identities=39% Similarity=0.743 Sum_probs=134.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
+|+++|++|||||||++++.++.+....||.++....+.. ..+.+.+||++|++.+...|..++..+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 6899999999999999999999887778888877776666 568999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
.++.....|+..+++.....+.|+++|+||+|+......+++...+..... ....++++++||++|+|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 999999999988877655568999999999999765556666666544333 335678999999999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=195.12 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=123.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|+|||||++++.++.+.+ +.||++.... .+.+. .+.+.+||++|++++..++..+++++|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 699999999999999999999999866 8899884443 44453 3789999999999999999999999999999999
Q ss_pred CCCcchHHHHHH-HHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH-H--------HHhhcccccCCC-ceEEEEecccC
Q 030122 94 SSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDDAA-V--------SEALELHKIKNR-QWAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~-~--------~~~~~~~~~~~~-~~~~~~~Sa~~ 162 (182)
++++++|+.+.. |+..+.... .++|+++|+||+|+.......+ + ....+....+.. .+.++++||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999974 777765543 5799999999999865321100 0 000011111222 36799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i 177 (182)
|.|++++|+.++.++
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998864
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=187.63 Aligned_cols=157 Identities=55% Similarity=0.918 Sum_probs=139.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
||+++|++|||||||++++++.....+.+|.++....+.+..+.+.+||+||++.+...+..++..+|++++|||+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998666888999888888888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++.....|+..+.......+.|+++++||+|+......+++.+.+.........++++++||++|.|++++|++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999988877665678999999999999876666677776665544556778999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=193.94 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=127.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|+.|+|||||++++.++.+.+ +.||++.+. ..+... .+.+.+||++|+++++.++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999999887 899998555 345553 478999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|++++.+|+.+..|+..+.... ....| ++|+||+|+..... .+.+. .......+..+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999887653 24567 67899999963211 11111 1111222334467999999999999999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|+++++.+.+.
T Consensus 158 f~~l~~~l~~~ 168 (182)
T cd04128 158 FKIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999887653
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=180.29 Aligned_cols=158 Identities=17% Similarity=0.233 Sum_probs=136.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
...|++++|...+|||||+.++.+..|.. ...|.|++.+.-.+ +.+++++|||+|+++++.+.-.|+++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 44699999999999999999999999988 88888866654444 66899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-----HHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-----DAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+||+++.+||..+..|...+... ...+.|+|+|+||||+.+++. ...+.++++. .+|++||+.+.|
T Consensus 100 myDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf--------efFEtSaK~Nin 170 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF--------EFFETSAKENIN 170 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhCh--------HHhhhccccccc
Confidence 99999999999999999988665 557999999999999987542 2344555554 499999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 030122 166 LFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 166 i~~~~~~l~~~i~~~~s 182 (182)
++++|+.++..+.+.+|
T Consensus 171 Vk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 171 VKQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887654
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=190.23 Aligned_cols=156 Identities=16% Similarity=0.225 Sum_probs=129.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++..+.+.. +.+|.+.......+ ..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 489999999999999999999888766 88888866655544 4578999999999999989999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++++++.+..|+..+.... .++|+++|+||+|+.......+.. . ..+...+.++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQI-T----FHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHH-H----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999999999987664 389999999999997432212211 1 11335567999999999999999999
Q ss_pred HHHHHhcC
Q 030122 173 LSNTLKSG 180 (182)
Q Consensus 173 l~~~i~~~ 180 (182)
+++.+.+.
T Consensus 154 l~~~~~~~ 161 (166)
T cd00877 154 LARKLLGN 161 (166)
T ss_pred HHHHHHhc
Confidence 99988753
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=192.80 Aligned_cols=161 Identities=32% Similarity=0.567 Sum_probs=138.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
+..||+++|++|||||||++++.+..+..+.||.+.....+.+.+..+.+||+||++.++..|..+++++|++++|+|++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~ 97 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAA 97 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECC
Confidence 46899999999999999999999888866888888877788888899999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-----------CCCceEEEEecccCCC
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-----------KNRQWAIFKTCAIKGE 164 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~ 164 (182)
+.++++....|+..+.......+.|+++++||+|+......+++.+.+..... ..+.+.+++|||++|+
T Consensus 98 ~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 177 (190)
T cd00879 98 DPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQ 177 (190)
T ss_pred cHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCC
Confidence 99999988899998887655578999999999999876666677666654322 1245779999999999
Q ss_pred CHHHHHHHHHHH
Q 030122 165 GLFEGMDWLSNT 176 (182)
Q Consensus 165 ~i~~~~~~l~~~ 176 (182)
|++++|+|+.+.
T Consensus 178 gv~e~~~~l~~~ 189 (190)
T cd00879 178 GYGEAFRWLSQY 189 (190)
T ss_pred ChHHHHHHHHhh
Confidence 999999999865
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=195.14 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=128.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|||||||++++.++.+.. +.||.+... ..+.+ ..+.+.+|||+|++++..++..+++++|++++|
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 35899999999999999999999988876 778877333 33344 456788999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++++|+.+..|+..+.......+.|+++|+||+|+.+... ..+.. .+ .+....+++++||++|.|++++
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~-~~----~~~~~~~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQ-EL----AKSFGIPFLETSAKQRVNVDEA 158 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH-HH----HHHhCCEEEEeeCCCCCCHHHH
Confidence 99999999999999999887665456899999999999865322 11111 11 1122357999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|.++++.+.+
T Consensus 159 ~~~l~~~l~~ 168 (189)
T PTZ00369 159 FYELVREIRK 168 (189)
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=191.80 Aligned_cols=156 Identities=22% Similarity=0.341 Sum_probs=127.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||+++++++.+.. +.+|.+.... .+.. ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999999877 8888885543 3444 4688999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCC----CCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEEL----KGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~----~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
|++++++++.+..|+..+...... .+.|+++|+||+|+.+.. ..++... + ....+++++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-W----AESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-H----HHHcCCeEEEEECCCCCCH
Confidence 999999999999999988765432 579999999999997422 2222211 1 1223356999999999999
Q ss_pred HHHHHHHHHHHh
Q 030122 167 FEGMDWLSNTLK 178 (182)
Q Consensus 167 ~~~~~~l~~~i~ 178 (182)
+++|+++++.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=189.49 Aligned_cols=155 Identities=16% Similarity=0.107 Sum_probs=125.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce-eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF-NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||++++.++.+.. +.||.+. ....+.+ ..+.+.+||++|+++++.++..++++++++++|||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 699999999999999999999988866 7777763 2333444 34668899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
+++..+|+.+..|+..+.+.....+.|+++|+||+|+..... ..+..... +..+++++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~ 156 (162)
T cd04138 82 INSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFYT 156 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999998887765556899999999999875321 12221111 223456999999999999999999
Q ss_pred HHHHH
Q 030122 173 LSNTL 177 (182)
Q Consensus 173 l~~~i 177 (182)
+++.+
T Consensus 157 l~~~~ 161 (162)
T cd04138 157 LVREI 161 (162)
T ss_pred HHHHh
Confidence 98764
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=194.98 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=126.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
||+++|++|||||||+++|.++.+.. +.||.+.... .+.. ..+.+.+||++|++.++.++..++.++|++|+|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 89999999999999999999999877 7888874432 3333 347899999999999999999999999999999999
Q ss_pred CCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHH---------HhhcccccCC-CceEEEEecccCC
Q 030122 95 SDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS---------EALELHKIKN-RQWAIFKTCAIKG 163 (182)
Q Consensus 95 ~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~Sa~~~ 163 (182)
+++++|+.+. .|+..+.... .+.|+++|+||+|+.......+.. ...+....+. ..++++++||++|
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 82 DSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 9999999886 5877776543 589999999999997643322111 1111112222 3367999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++|.++++.+...
T Consensus 160 ~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 160 RGVNEAFTEAARVALNV 176 (189)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999988753
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=190.09 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=126.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
++||+++|.+|+|||||++++.++.+.+ +.+|.+ +....+... .+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4799999999999999999999998877 667765 444445543 457889999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-HHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA-AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++.+|+.+..|+..+.......++|+++|+||+|+....... .....+. +...++++++||++|.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999888776545789999999999986432211 1111211 12235799999999999999999
Q ss_pred HHHHHH
Q 030122 172 WLSNTL 177 (182)
Q Consensus 172 ~l~~~i 177 (182)
++++.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998764
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=189.61 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=125.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|+|||||++++.++.+.+ +.+|.+.+. ..+.+. .+.+.+||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 489999999999999999999999877 788888544 345553 478899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+...... .+....+. +...++++++||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999998886543 357999999999998754332 12222221 22235799999999999999999
Q ss_pred HHHHH
Q 030122 172 WLSNT 176 (182)
Q Consensus 172 ~l~~~ 176 (182)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=190.82 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=127.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
||+++|++|||||||++++.++.+.. +.||++... ..+.+ ..+.+.+||++|++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999877 889988544 33444 34789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
++++++++.+..|+..+++.....+.|+++|+||+|+.+.... ++....+ ......+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999999998876544456789999999998653221 1111111 12233569999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
+.+.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999988754
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=187.38 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=126.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.++.+.+ +.++.+... ..+.. ..+.+.+|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999998877 666665433 23333 4578899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++.+++.+..|+..+.+.. .+.|+++|+||+|+.... ..+. ..+ .....++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~-~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKK-FNF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHH-HHH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999998886543 579999999999985321 1111 111 1223467999999999999999999
Q ss_pred HHHHHhcCC
Q 030122 173 LSNTLKSGG 181 (182)
Q Consensus 173 l~~~i~~~~ 181 (182)
+++.+.+++
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 999888764
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=194.98 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=125.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
||+++|.+|||||||+++|.++.+.. +.+|.+.. ...+.+ ..+.+.+|||+|+++++.++..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999988877 77877732 233444 346789999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCCCCCHH-HHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDDA-AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+++++|+.+..|+..+..... ..+.|+++|+||+|+....... ..... .....+++++++||++|.|++++|.
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~----~~~~~~~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA----LARRLGCEFIEASAKTNVNVERAFY 156 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHH----HHHHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999888765432 2578999999999996532211 11111 1122345799999999999999999
Q ss_pred HHHHHHhcC
Q 030122 172 WLSNTLKSG 180 (182)
Q Consensus 172 ~l~~~i~~~ 180 (182)
++++.+.+.
T Consensus 157 ~l~~~l~~~ 165 (190)
T cd04144 157 TLVRALRQQ 165 (190)
T ss_pred HHHHHHHHh
Confidence 999887643
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=193.89 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=128.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|||||||+++|.+..+.. +.+|.+.+. ..+.+ ..+.+.+||++|++.++.++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 35899999999999999999999998876 788888544 44444 34688999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||++++++|+.+..|+..+.... ...|+++|+||+|+...... ++... +. ...+++++++||++|.|+++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYK-FA----GQMGISLFETSAKENINVEE 157 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCEEEEEECCCCcCHHH
Confidence 999999999999999999886643 67899999999999754322 22211 11 12235699999999999999
Q ss_pred HHHHHHHHHhc
Q 030122 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 ~~~~l~~~i~~ 179 (182)
+|+++.+.+..
T Consensus 158 lf~~l~~~~~~ 168 (199)
T cd04110 158 MFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=189.49 Aligned_cols=157 Identities=20% Similarity=0.254 Sum_probs=129.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|+|||||++++.+..+.+ +.+|.+... ..+.+ ..+.+.+||++|++++..++..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 4799999999999999999999999877 788888544 34444 347899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+... .++..... +...++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEEA 156 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999998886642 36789999999999975432 22222211 223457999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|.++.+.+..
T Consensus 157 ~~~i~~~~~~ 166 (167)
T cd01867 157 FFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHh
Confidence 9999998864
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=180.21 Aligned_cols=162 Identities=18% Similarity=0.222 Sum_probs=136.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
-..-+|++++|+.|+|||||+++|...++.+ ...|+|+.... +.+ +.++++||||+|+++|++..+.|++++.++
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 3456799999999999999999999999988 88899955543 444 779999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
++|||++++++|..+..|+.++.... .+++-+++++||.|+.+.++..- .....++.+..+-++++|+++|+|+++
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL~~~R~Vtf---lEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDLDPEREVTF---LEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhcChhhhhhH---HHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999999999999986654 47889999999999987654322 222233344556699999999999999
Q ss_pred HHHHHHHHHhc
Q 030122 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 ~~~~l~~~i~~ 179 (182)
.|-...+.+..
T Consensus 162 aFl~c~~tIl~ 172 (214)
T KOG0086|consen 162 AFLKCARTILN 172 (214)
T ss_pred HHHHHHHHHHH
Confidence 99888877653
|
|
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=188.49 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=126.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||++++.++.+.. +.+|.+ .....+.. ..+.+.+||+||++++..++..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999988876 666666 22333444 44788999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
++++++|+.+..|+..+.......+.|+++|+||+|+...... .+....+. +...++++++||++|.|++++|++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~l~~~ 156 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA----RQWGCPFLETSAKERVNVDEAFYD 156 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH----HHcCCEEEEeecCCCCCHHHHHHH
Confidence 9999999999999888876655568999999999998753221 11111111 122367999999999999999999
Q ss_pred HHHHHhc
Q 030122 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~i~~ 179 (182)
+++.+.+
T Consensus 157 l~~~~~~ 163 (164)
T smart00173 157 LVREIRK 163 (164)
T ss_pred HHHHHhh
Confidence 9988764
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=191.55 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=122.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
++||+++|++|||||||+.++..+.+.. +.||.+.. ...+.. ..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 4799999999999999999999998876 78887632 223334 4478999999999999999999999999999999
Q ss_pred eCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHh--------hcccccCCC-ceEEEEeccc
Q 030122 93 DSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEA--------LELHKIKNR-QWAIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~--------~~~~~~~~~-~~~~~~~Sa~ 161 (182)
|++++++|+.+. .|+..+.... .+.|+++|+||+|+.+... .+.+... .+....+.. .++++++||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 999999999996 5777665543 5899999999999964321 1111111 111111222 2479999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030122 162 KGEGLFEGMDWLSNT 176 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~ 176 (182)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=195.17 Aligned_cols=159 Identities=20% Similarity=0.311 Sum_probs=129.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
.+||+++|++|||||||+++|.++.+.. ..+|++.+. ..+.+ ..+.+.+||++|++++..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 4799999999999999999999998877 678887544 33444 34789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|||++++++|+.+..|+..+.........|+++|+||+|+...... .+....+ .+..+++++++||++|.|++++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sak~g~~v~e~ 157 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKL----AKDLGMKYIETSARTGDNVEEA 157 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHH----HHHhCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999999876644456899999999999764321 1112222 1223467999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|+++.+.+.+
T Consensus 158 f~~l~~~~~~ 167 (211)
T cd04111 158 FELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=188.25 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=126.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.++.+.. +.+|.+.+. ..+.. ..+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 699999999999999999999999876 788887443 33333 3478999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+.+... .++..+.. ...+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999998886543 35789999999999975432 22221111 1223469999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
+++++.+.+
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987654
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=195.69 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=127.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+||+++|++|||||||+++|.++.+.. +.||++.+. ..+.+ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999998877 889988554 34444 258899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
||++++++|+.+..|+..+..... ..+.|+++|+||+|+...... .+....+ .+..+++++++||++|+|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~----~~~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARF----AQANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHH----HHHcCCEEEEEECCCCCCHHH
Confidence 999999999999999888876532 245789999999999643221 1111111 122335699999999999999
Q ss_pred HHHHHHHHHhc
Q 030122 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 ~~~~l~~~i~~ 179 (182)
+|+++++.+..
T Consensus 157 lf~~l~~~l~~ 167 (215)
T cd04109 157 LFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=186.46 Aligned_cols=163 Identities=43% Similarity=0.760 Sum_probs=141.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+....++|+++|++|||||||++++.+..+....+|.+++...+.+.+..+.+||++|+..+...+..+++++|++++|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 33447899999999999999999999987766888888888888888899999999999998889999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|.++..++.....++..+.......++|+++++||+|+.+....+++.+.++......+..+++++||++|+|++++|+|
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 99999999888888888776655568999999999999876667777777776666666677899999999999999999
Q ss_pred HHH
Q 030122 173 LSN 175 (182)
Q Consensus 173 l~~ 175 (182)
|++
T Consensus 170 l~~ 172 (173)
T cd04155 170 VCK 172 (173)
T ss_pred Hhc
Confidence 975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=195.56 Aligned_cols=161 Identities=13% Similarity=0.100 Sum_probs=125.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||+++|.++.+.. +.||++..+. .+.+ ..+.+.+|||+|++.|..+++.++.++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 699999999999999999999999887 8899884432 3444 56789999999999999999999999999999999
Q ss_pred CCCcchHHHHHH-HHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HH--------HHHhhcccccCCCc-eEEEEecccC
Q 030122 94 SSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDD-AA--------VSEALELHKIKNRQ-WAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (182)
++++++|+.+.. |...+... ..+.|+++|+||+|+.+.... .+ +....+....+..+ ++|++|||++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999965 55444333 368999999999999653210 11 11222222233334 4899999999
Q ss_pred CCC-HHHHHHHHHHHHhcC
Q 030122 163 GEG-LFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~-i~~~~~~l~~~i~~~ 180 (182)
+.+ ++++|..++.+....
T Consensus 160 ~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 160 SERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 985 999999999876653
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=185.22 Aligned_cols=157 Identities=35% Similarity=0.644 Sum_probs=131.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC------cc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV------VS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~------~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+|+++|++|||||||++++.+... .. +.+|.+.....+.+.+..+.+||+||++.+..++..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999986422 22 67888888888888899999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccc--cCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK--IKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
+|+++++++.....|+..+.+.....++|+++++||+|+......+++...+.... .....++++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999999999999998887765557899999999999977655555544443321 2335678999999999999999
Q ss_pred HHHHHH
Q 030122 170 MDWLSN 175 (182)
Q Consensus 170 ~~~l~~ 175 (182)
++||.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999975
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=189.32 Aligned_cols=163 Identities=16% Similarity=0.190 Sum_probs=136.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.-...+||++||++++|||-|+.|+..+.|.. ..+|+|+...+ +.+ +.++.+||||+||++|++....|++++.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 44567899999999999999999999999988 88999955554 444 77899999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+++|||+++..+|+.+..|+.+++.+.. +++++++|+||+|+...+. +..+.+.......+..++++||.++.|++
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lra---V~te~~k~~Ae~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRA---VPTEDGKAFAEKEGLFFLETSALDATNVE 165 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccc---cchhhhHhHHHhcCceEEEecccccccHH
Confidence 9999999999999999999999987754 6999999999999976322 11222222223344569999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
..|..++..+..
T Consensus 166 ~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 166 KAFERVLTEIYK 177 (222)
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=187.47 Aligned_cols=156 Identities=21% Similarity=0.287 Sum_probs=126.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.++.+.. +.+|.+... ..+.+ ..+.+.+||++|++++..++..+++++|++++||
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 799999999999999999999988876 677777433 34444 3468899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++++|..+..|+..+.... ..+.|+++++||+|+..... .++... +. ...+++++++||++|.|++++|
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQE-FA----DELGIPFLETSAKNATNVEQAF 156 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHH-HH----HHcCCeEEEEECCCCcCHHHHH
Confidence 9999999999999998886543 35789999999999865432 222211 11 2234579999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
.++.+.+.+
T Consensus 157 ~~i~~~~~~ 165 (166)
T cd01869 157 MTMAREIKK 165 (166)
T ss_pred HHHHHHHHh
Confidence 999998764
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=186.69 Aligned_cols=154 Identities=19% Similarity=0.158 Sum_probs=121.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||++++.++.+.. +.||.+... ..+.. ..+.+.+||++|++++..++..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 799999999999999999999998866 677776322 22333 55789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhcc--CCCCCeEEEEeeCCCCCCCCCHH-HHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDDA-AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
++++.+++.+..|+..+.... ...++|+++|+||+|+....... +....+ .....+.++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAAC----ATEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHH----HHHhCCcEEEeecCCCCCHHHHH
Confidence 999999999999887765432 22579999999999996532211 111111 12234569999999999999999
Q ss_pred HHHHH
Q 030122 171 DWLSN 175 (182)
Q Consensus 171 ~~l~~ 175 (182)
++|+.
T Consensus 158 ~~l~~ 162 (165)
T cd04140 158 QELLN 162 (165)
T ss_pred HHHHh
Confidence 99975
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=185.74 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=117.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
+||+++|++|||||||++++..+.+.+ +.|+.+.....+.+++ +.+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 489999999999999999999988877 5555554445666654 7799999999975 2456789999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCC-CceEEEEecccCCCCHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN-RQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
++++||+.+..|+..+.......++|+++|+||+|+..... .++.........+. ..+.+++|||++|.||+++|.++
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~-~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNP-RVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCC-cccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 99999999999999997765556799999999999853111 11111111111112 34679999999999999999999
Q ss_pred HHH
Q 030122 174 SNT 176 (182)
Q Consensus 174 ~~~ 176 (182)
++.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 865
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=174.92 Aligned_cols=166 Identities=31% Similarity=0.562 Sum_probs=156.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
.++.+.++|..+||||||++....+.+.+ ..||.|++...+.-..+.+.+||.||+.+|+++|..|++.+++++||+|+
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDa 98 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDA 98 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeec
Confidence 35789999999999999999999999988 99999999999988999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
.+++.+.....-++.++..+...++|+++.+||.|++++-...++...+++....++++.+|.+|+++..|++.+..|++
T Consensus 99 ad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli 178 (186)
T KOG0075|consen 99 ADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLI 178 (186)
T ss_pred CCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHH
Confidence 99999999999999999998889999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 030122 175 NTLKSGG 181 (182)
Q Consensus 175 ~~i~~~~ 181 (182)
+.-...+
T Consensus 179 ~hsk~~~ 185 (186)
T KOG0075|consen 179 EHSKSLR 185 (186)
T ss_pred HHhhhhc
Confidence 8766543
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=189.59 Aligned_cols=150 Identities=16% Similarity=0.258 Sum_probs=125.4
Q ss_pred EecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 23 FFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 23 iG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
+|.+|||||||+++++++.+.. +.+|++.......+ ..+.+.+||++|+++|+.++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999988876 88999866654443 468999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
.+|+.+..|+..+.... .++|+++|+||+|+.... ..+.. ...+...+.+++|||++|.|++++|.++++.
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI------TFHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH------HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999887754 589999999999985422 11111 1123346789999999999999999999988
Q ss_pred HhcC
Q 030122 177 LKSG 180 (182)
Q Consensus 177 i~~~ 180 (182)
+...
T Consensus 153 i~~~ 156 (200)
T smart00176 153 LIGD 156 (200)
T ss_pred HHhc
Confidence 7653
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=185.01 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=125.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+||+++|++|+|||||+++++++.+.. +.+|.+.. .....+ ..+.+.+|||||++++..++..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 3799999999999999999999888766 66776622 223334 3467899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++.+|+.+..|+..+.......+.|+++++||+|+...... .+....+ .+..+++++++||++|.|++++|+
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i~~l~~ 157 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL----ARKLKIPYIETSAKDRLNVDKAFH 157 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH----HHHcCCcEEEeeCCCCCCHHHHHH
Confidence 99999999999999988876544568999999999999754321 1111111 122335699999999999999999
Q ss_pred HHHHHH
Q 030122 172 WLSNTL 177 (182)
Q Consensus 172 ~l~~~i 177 (182)
++.+.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04145 158 DLVRVI 163 (164)
T ss_pred HHHHhh
Confidence 998765
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=179.08 Aligned_cols=156 Identities=33% Similarity=0.601 Sum_probs=135.4
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
|+++|++|||||||++++.+..+.. +.||.++....+....+.+.+||++|++.++.++..++..+|++++|+|+++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 7999999999999999999998877 889999887777777899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++.....|+..+.......++|+++|+||+|+.+.....++...+.........++++++|+++|.|++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 99988888888876655578999999999999876555555555555544455678999999999999999999865
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=179.57 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=133.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+.+++|++|+|||+|+.+|..+.|.. +..|+| +.+.++.+ ..++++|||++|+++|+.+...|++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 477899999999999999999999988 999999 44555555 6789999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|+++.+||.....|++++.... ...|-++|+||+|.++..-. ....+..++...++.+|++|++.++|++..|.-
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV---~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVV---DTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceee---ehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999999997765 68999999999999864322 222223334456677999999999999999999
Q ss_pred HHHHHhc
Q 030122 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~i~~ 179 (182)
|.+++.+
T Consensus 164 it~qvl~ 170 (198)
T KOG0079|consen 164 ITKQVLQ 170 (198)
T ss_pred HHHHHHH
Confidence 9887654
|
|
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=182.86 Aligned_cols=158 Identities=13% Similarity=0.225 Sum_probs=126.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|||||||++++.++.+.+ +.++.+... ..+.+ ..+.+.+||++|+++++.++..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 46899999999999999999999988877 677877543 34444 45788999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccC---CCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
|||++++++++.+..|...+..... ..++|+++|+||+|+... ...+++.+.... ....+++++||++|.|+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATNV 159 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCCH
Confidence 9999999999999999988765432 256899999999998632 222333222111 11236999999999999
Q ss_pred HHHHHHHHHHH
Q 030122 167 FEGMDWLSNTL 177 (182)
Q Consensus 167 ~~~~~~l~~~i 177 (182)
.++|+++++.+
T Consensus 160 ~~~~~~~~~~~ 170 (170)
T cd04116 160 AAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=191.01 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=131.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
+...+||+++|++|||||||+++|.+..+.. +.+|.+.+. ..+.+ ..+.+.+||++|++++..++..++++++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 3456899999999999999999999988875 778888554 44444 347899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...... .+....+. ....++++++||++|.|++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~ 163 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVE 163 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999998876543 357999999999998654332 22222222 2245679999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++++.+.+
T Consensus 164 ~lf~~l~~~i~~ 175 (216)
T PLN03110 164 KAFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=184.49 Aligned_cols=154 Identities=18% Similarity=0.263 Sum_probs=124.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.++.+.. ..++.+.... .+.+ ..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999998866 6777764433 3344 3478999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++.++..+..|+..+.... ..++|+++++||+|+..... .++..... +..++.++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFA-----QENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999988875442 36899999999999975322 22222221 1223679999999999999999
Q ss_pred HHHHHHH
Q 030122 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~i 177 (182)
+++++.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=189.22 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=128.8
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCC
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (182)
.+.+....+||+++|++|+|||||+++|.+..+..+.++.+... ..+.+ ..+.+.+||+||++++..++..+++.+
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 33444557899999999999999999999988877888887544 34444 347889999999999999999999999
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHH-HHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCCCceEEEEecccC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHA-ILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~-~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
|++++|||++++++|+.+..++.. +.......+.|+++|+||+|+...... ++.. .+ .....++++++||++
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~-~~----~~~~~~~~~e~SAk~ 161 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGM-AL----AKEHGCLFLECSAKT 161 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH-HH----HHHcCCEEEEEeCCC
Confidence 999999999999999999874443 333333357899999999999754322 2211 11 122345799999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 030122 163 GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~~ 180 (182)
|.|++++|+++.+.+...
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 162 RENVEQCFEELALKIMEV 179 (211)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887643
|
|
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=183.75 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=127.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
-+||+++|++|+|||||++++.++.+.. ..+|.+.+. ..+.. ....+.+||++|++++..++..+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 3799999999999999999999988776 667776443 33444 347899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+++.+..|+..+.... .++.|+++|+||.|+.... ..++..... ....+.++++||+++.|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999886653 3689999999999987432 222322221 123456999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|.++.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.2e-32 Score=188.08 Aligned_cols=156 Identities=16% Similarity=0.163 Sum_probs=123.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|+|||||+++|.++.+.. +.||.+.... .+.. ..+.+.+|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999998876 7777764432 2333 3578999999999999999999999999999999
Q ss_pred eCCCcchHHHHHH-HHHHHHhccCCCCCeEEEEeeCCCCCCCCC------HHHHHHhhcccccCCCce-EEEEecccCCC
Q 030122 93 DSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALD------DAAVSEALELHKIKNRQW-AIFKTCAIKGE 164 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (182)
|++++++|+.+.. |+..+.... .+.|+++|+||+|+..... .++.. .+ ....+. +++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~-~~----~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVTPAQAE-SV----AKKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcCHHHHH-HH----HHHcCCcEEEEccCCCCC
Confidence 9999999999864 777665432 5799999999999865321 11111 11 112223 69999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|.++++.+...
T Consensus 154 ~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 154 NVEEVFDTAIEEALKK 169 (187)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999887753
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=187.20 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=127.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.++.+.. +.+|.+... ..+.+ ..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 489999999999999999999999877 788888433 34444 3578899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++++|..+..|+..+.... ..+.|+++++||+|+.+.... .+....+. ...+++++++||++|.|++++|.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999998886543 246899999999998753321 11111111 12345799999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
++++.+..
T Consensus 156 ~l~~~~~~ 163 (188)
T cd04125 156 LLVKLIIK 163 (188)
T ss_pred HHHHHHHH
Confidence 99998764
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.2e-31 Score=189.86 Aligned_cols=156 Identities=18% Similarity=0.151 Sum_probs=127.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||+++++++.+.. +.||++ +....+.+. .+.+.+|||+|++.|..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 489999999999999999999998876 788886 444455553 4788999999999999988888999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhcc--------CCCCCeEEEEeeCCCCCCC--CCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 94 SSDTDRIQTAKEEFHAILEEE--------ELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~p~i~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++++++|+.+..|+..+.... ...++|+++|+||+|+... ...+++.+.... ...+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 999999999999998887542 2357999999999999742 233444433321 12457999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
.|++++|++|.+..
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999865
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=184.85 Aligned_cols=158 Identities=23% Similarity=0.315 Sum_probs=127.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCCh-hhhhhhCCCCCEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIR-PYWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~i~ 90 (182)
.+||+++|++|||||||++++.++.+.. +.+|.+... ..+.+ ..+.+.+||++|+++++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999988876 778877443 34444 34789999999999887 578889999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccC---CCCH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIK---GEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i 166 (182)
|||++++++|+.+..|+..+.......++|+++|+||+|+...... .+....+. +...++++++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 9999999999999999988876654568999999999998754331 22222222 22346799999999 9999
Q ss_pred HHHHHHHHHHHh
Q 030122 167 FEGMDWLSNTLK 178 (182)
Q Consensus 167 ~~~~~~l~~~i~ 178 (182)
+++|.++++.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=187.16 Aligned_cols=160 Identities=17% Similarity=0.155 Sum_probs=124.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+||+++|++|+|||||+++|.++.+.. +.+|++..+ ..+.+ ..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 778887433 34555 346788999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
||++++.+|+.+..|+..+.... .+.|+++|+||+|+..... ...+.............++++++||++|.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999988886643 5799999999999864321 10110000001112234569999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
+++.+.+.+
T Consensus 159 ~~i~~~~~~ 167 (193)
T cd04118 159 QKVAEDFVS 167 (193)
T ss_pred HHHHHHHHH
Confidence 999987754
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=182.69 Aligned_cols=155 Identities=18% Similarity=0.249 Sum_probs=125.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|||||||++++.++.+.. ..||.+... ..+... .+.+.+||++|++++..++..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 3799999999999999999999998876 778887544 344443 36899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+++.+..|+..+.... ..++|+++|+||+|+..... .++..... ....++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999998886654 24689999999999875432 22222221 123457999999999999999
Q ss_pred HHHHHHHH
Q 030122 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~i 177 (182)
|+++.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-32 Score=185.15 Aligned_cols=154 Identities=22% Similarity=0.315 Sum_probs=128.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEE--Ee--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETV--QY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~--~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
||+++|++|||||||+++|.++.+.+ +.+|.+.+.... .+ ..+.+.+||++|++++..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999888 888887555444 33 56789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC--CCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG--ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+++++||+.+..|+..+..... .+.|+++++||.|+.+ ....++..... +..+++|+++|++++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999999877653 4799999999999876 22333222111 22236799999999999999999
Q ss_pred HHHHHHh
Q 030122 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~i~ 178 (182)
.+++.++
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-31 Score=182.29 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=126.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
++||+++|++|||||||++++.++.+.. +.+|.+ .....+.+ ..+.+.+||++|++++..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 3799999999999999999999988866 677776 22334444 3478899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|.+++++++.+..|...+.......+.|+++++||+|+.+.... ++.. .+.. ....++++++||++|.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~-~~~~---~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGV-SLSQ---QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHH-HHHH---HcCCceEEEeeCCCCCCHHHHH
Confidence 99999999999999888876544568999999999998754321 1211 1111 1123679999999999999999
Q ss_pred HHHHHHHh
Q 030122 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~l~~~i~ 178 (182)
.+++..+.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99997654
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-31 Score=180.26 Aligned_cols=155 Identities=21% Similarity=0.302 Sum_probs=124.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|+|||||++++.++.+.. +.+|.+. ....+.+.+ +.+.+||+||++++..++..+++.+|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999988877 6677764 344555544 6889999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+|+.+..|+..+.... ..++|+++|+||+|+..... ..+...... ......++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEEA 157 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHHH
Confidence 99999999999999999886543 36799999999999975432 122211111 112235899999999999999
Q ss_pred HHHHHHH
Q 030122 170 MDWLSNT 176 (182)
Q Consensus 170 ~~~l~~~ 176 (182)
|+++.+.
T Consensus 158 ~~~l~~~ 164 (165)
T cd01864 158 FLLMATE 164 (165)
T ss_pred HHHHHHh
Confidence 9999875
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=186.76 Aligned_cols=157 Identities=20% Similarity=0.325 Sum_probs=126.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+||+++|++|||||||++++.++.+.. +.+|.+.... .+.+ ..+.+.+||+||++++..++..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 489999999999999999999988753 6777774443 3444 347899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
+|++++++|+.+..|+..+.... ..++|+++|+||+|+.... ..++... +. ....++++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~-l~----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGER-LA----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999998887653 3578999999999996432 2222221 11 122357999999999999999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|.++++.+.+.
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=182.94 Aligned_cols=152 Identities=17% Similarity=0.256 Sum_probs=123.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+.+.. .+.+ ..+.+++||+||++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999988876 7788875543 3333 35789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||++++++|+.+..|+..+.... .++|+++|+||+|+..... .++..... +..+++++++|+++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999999999988876543 6899999999999865322 22222111 12235699999999999999
Q ss_pred HHHHHHHH
Q 030122 169 GMDWLSNT 176 (182)
Q Consensus 169 ~~~~l~~~ 176 (182)
+|+++...
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998754
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-31 Score=183.59 Aligned_cols=158 Identities=13% Similarity=0.142 Sum_probs=121.6
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
|+++|++|||||||++++.++.+.. +.++.+... ..+.+ ..+.+.+|||+|++.+..++..+++++|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 6899999999999999999999876 667765322 23334 3467999999999999999999999999999999999
Q ss_pred CcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHH--------HHhhcccccCCCc-eEEEEecccCCC
Q 030122 96 DTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDD-AAV--------SEALELHKIKNRQ-WAIFKTCAIKGE 164 (182)
Q Consensus 96 ~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~--------~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (182)
++++|+.+. .|+..+.... +++|+++|+||+|+...... +++ .........+..+ ..++++||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 999999986 5777776543 68999999999999753211 111 0111111122223 379999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+.+++.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988764
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=183.73 Aligned_cols=160 Identities=17% Similarity=0.059 Sum_probs=122.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeCC--EEEEEEECCCCCCChh--------hhhhhCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRP--------YWRCYFPN 84 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~--------~~~~~~~~ 84 (182)
+||+++|.+|||||||++++.++.+.. +.||.+... ..+.+.+ +.+.+|||+|...+.. ....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999877 788876332 3444544 7889999999765421 12345789
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhcc--CCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEeccc
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+|++|+|||++++++|+.+..|+..+.... ...++|+++|+||+|+...... .+....+. .+...++++++||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---RKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH---HHhcCCcEEEecCC
Confidence 999999999999999999999988887653 2467999999999999654221 11111111 11235679999999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030122 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~~ 180 (182)
+|.|++++|..+++.+..+
T Consensus 158 ~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 158 YNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCHHHHHHHHHHHhhcc
Confidence 9999999999999877644
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=180.90 Aligned_cols=157 Identities=18% Similarity=0.302 Sum_probs=126.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.+..+.. ..++.+... ..+.+. .+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999988766 667777443 344443 378999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++.+++.+..|+..+..... .++|+++++||+|+.... ..+.... +. +..+++++++|+++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-FA----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999888766542 589999999999987532 2222222 21 2234569999999999999999
Q ss_pred HHHHHHHhcC
Q 030122 171 DWLSNTLKSG 180 (182)
Q Consensus 171 ~~l~~~i~~~ 180 (182)
+++.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999988653
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=177.22 Aligned_cols=154 Identities=17% Similarity=0.235 Sum_probs=126.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.+..+.. ..++.+... ..+.+ ..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988766 777777443 33444 3478999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++.+++.+..|+..+.......+.|+++|+||+|+.... ..++... +. ....++++++|+++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FA----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HH----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999999998888776656789999999999997332 2222221 11 22356799999999999999999
Q ss_pred HHHHH
Q 030122 172 WLSNT 176 (182)
Q Consensus 172 ~l~~~ 176 (182)
++.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 99875
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=176.29 Aligned_cols=154 Identities=18% Similarity=0.115 Sum_probs=123.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc-c-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV-S-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~-~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
.-+||+++|.+|||||||++++.++.+. . +.||.+.. ...+.+. .+.+.+||++|++.+..++..+++++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 3479999999999999999999999987 5 88888843 3455553 378899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-----HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-----DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|||++++.+|+.+..|+..+.. ..++|+++|+||+|+.+... .+++.+.++. ..++++||++|.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~ 152 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------PPPLHFSSKLGD 152 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCC-------CCCEEEEeccCc
Confidence 99999999999999888876532 24799999999999864321 1233322221 126899999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+.+++.+.+
T Consensus 153 ~v~~lf~~l~~~~~~ 167 (169)
T cd01892 153 SSNELFTKLATAAQY 167 (169)
T ss_pred cHHHHHHHHHHHhhC
Confidence 999999999988764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=179.78 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=123.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcC--CCcc-ccCCCceee--EEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG--EVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~--~~~~-~~~t~~~~~--~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
+||+++|++|||||||++++..+ .+.+ +.+|.+.+. ..+.+ ..+.+.+||++|++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 4555 788887554 33333 4589999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH-HHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA-VSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+...... ..+.+. ....++++++||++|.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999999999998876653 5799999999999965432211 111111 12235699999999999999
Q ss_pred HHHHHHHHH
Q 030122 169 GMDWLSNTL 177 (182)
Q Consensus 169 ~~~~l~~~i 177 (182)
+|+++.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999875
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=175.47 Aligned_cols=155 Identities=22% Similarity=0.280 Sum_probs=127.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
++||+++|++|||||||++++.++.+.. ..++.+. ....+.+ ..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 3799999999999999999999999877 7777773 3344555 457899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
+|++++++++....|+..+..... .+.|+++++||+|+.... ..++..... ....++++++||++|.|+.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYA-----DENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 999999999999999998876643 679999999999987432 223322221 112357999999999999999
Q ss_pred HHHHHHHH
Q 030122 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~i 177 (182)
|+++++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999875
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-31 Score=178.71 Aligned_cols=154 Identities=17% Similarity=0.254 Sum_probs=123.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.||+++|++|||||||++++.+..+.. +.++.+.+ ...+.+. .+.+.+||+||++++..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 389999999999999999999998876 67777644 3445453 367999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++++|+.+..|+..+..... .+.|+++++||+|+..... ..+....+. +...+.++++||+++.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA----KELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH----HHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876532 3799999999999954322 111111111 12336799999999999999999
Q ss_pred HHHHH
Q 030122 172 WLSNT 176 (182)
Q Consensus 172 ~l~~~ 176 (182)
++.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 99875
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=176.47 Aligned_cols=159 Identities=13% Similarity=0.183 Sum_probs=125.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.+..+.. ..+|.+.+. ..+.+ ..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 489999999999999999999988766 667766433 34444 3467889999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccC---CCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
|++++.+++....|...++.... ..++|+++|+||+|+..+. ..++...... .....+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCCHH
Confidence 99999999999888877665432 2479999999999997422 2333322221 1123579999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030122 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~~~~~l~~~i~~~ 180 (182)
++|+++.+.+.+.
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877654
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=184.86 Aligned_cols=157 Identities=16% Similarity=0.187 Sum_probs=127.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|+|||||++++.+..+.. +.+|++.+. ..+.+ ..+.+.+||++|++.+..++..++..+|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 4899999999999999999999988877 777887543 34444 346789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+|+.+..|+..+.... ..+.|+++++||+|+.... ..++..... +...++++++||+++.|++++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEA 159 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999988875543 3579999999999997532 222222211 223457999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|.++++.+.+
T Consensus 160 f~~l~~~~~~ 169 (210)
T PLN03108 160 FIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=170.03 Aligned_cols=167 Identities=58% Similarity=0.897 Sum_probs=156.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
.++.+|+++|..|+||||+..++.-+......||++++...+.+++.++++||.+|+-..++.|+.|+++.|++|||+|.
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDs 95 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDS 95 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEec
Confidence 37789999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
++.+++......+..+++...+.+..+++++||.|........++...+++...+++.+.++++||.+|+|++..++|+.
T Consensus 96 sd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~ 175 (182)
T KOG0072|consen 96 SDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQ 175 (182)
T ss_pred cchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHH
Confidence 99999988888888888888888999999999999998878889999999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 030122 175 NTLKSGG 181 (182)
Q Consensus 175 ~~i~~~~ 181 (182)
+.+.+++
T Consensus 176 ~~l~~~~ 182 (182)
T KOG0072|consen 176 RPLKSRQ 182 (182)
T ss_pred HHHhccC
Confidence 9988753
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=179.68 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=120.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+ .....+.+ ..+.+.+||++|++.+...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999998876 667765 22233444 34668899999999999999999999999999999
Q ss_pred CCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH-H--------HHhhcccccCCCc-eEEEEecccC
Q 030122 94 SSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAA-V--------SEALELHKIKNRQ-WAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~-~--------~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (182)
++++.+|+.+. .|+..+... ..+.|+++++||+|+.+.....+ + ....+....+..+ ..++++||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 99999999886 466665443 47899999999999865322111 0 0000111111222 3699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i 177 (182)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=180.17 Aligned_cols=156 Identities=13% Similarity=0.099 Sum_probs=117.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|+|||||++++.++.+.. +.+|.. .....+.. ..+.+.+||++|++++..++..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999999888876 677653 22223444 34788999999999999999999999999999999
Q ss_pred CCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---------HHHHHhhcccccCCCc-eEEEEecccC
Q 030122 94 SSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDD---------AAVSEALELHKIKNRQ-WAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (182)
++++++|+.+. .|+..+.... .+.|+++++||+|+...... ..+.........+..+ ..++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999885 5777765432 57999999999998643210 0000001111112222 3799999999
Q ss_pred CCCHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSN 175 (182)
Q Consensus 163 ~~~i~~~~~~l~~ 175 (182)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=172.69 Aligned_cols=160 Identities=19% Similarity=0.261 Sum_probs=132.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
..+|.++||+.-+|||||++.+..+++.+ ..||+|++. ..+.. ..+++++|||+|+++|++....|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 46799999999999999999999999999 999999444 33333 5689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+|||++|.+||+-+..|+.+...... ..++-+++|++|+|+...+.. ..+.+....+..++.+++||+++|.|+++
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV---t~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV---TAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc---cHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 99999999999999999988765543 355677899999999865433 22222223345666799999999999999
Q ss_pred HHHHHHHHHh
Q 030122 169 GMDWLSNTLK 178 (182)
Q Consensus 169 ~~~~l~~~i~ 178 (182)
.|.-+.+.+.
T Consensus 164 AF~mlaqeIf 173 (213)
T KOG0091|consen 164 AFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHH
Confidence 9999888764
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=179.75 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=126.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
||+++|++|||||||+++++++.+.. +.+|.+ .....+.+.+ +.+.+||++|+..+..++..++..+|++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999988877 666665 4444555544 7899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+++.+++.+..|+..+.......++|+++|+||+|+..... ..+..+... .....+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence 99999999999998888776556899999999999865311 111111111 12234689999999999999999
Q ss_pred HHHHHHh
Q 030122 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~i~ 178 (182)
++++.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998765
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=175.75 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=123.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|+|||||+++++++.+.+ ..++.+ +....+.+ ..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999988866 555554 33334444 3467999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++++++.+..|+..+..... .++|+++++||+|+..... .+++.... +...+.++++|++++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999888866543 3799999999999975432 22222221 1234568999999999999999
Q ss_pred HHHHHHH
Q 030122 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~i 177 (182)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998865
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=181.27 Aligned_cols=156 Identities=13% Similarity=0.095 Sum_probs=114.7
Q ss_pred eeEEEEEecCCCChHHHHH-HhhcCCC-----cc-ccCCCce-eeE--E----------EEeCCEEEEEEECCCCCCChh
Q 030122 17 HVLGFSFFIDNFGNLCDTD-RLQMGEV-----VS-TIPTIGF-NVE--T----------VQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~-~l~~~~~-----~~-~~~t~~~-~~~--~----------~~~~~~~~~i~d~~g~~~~~~ 76 (182)
.+||+++|++|+|||||+. ++.++.+ .. +.||++. +.. . +....+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3799999999999999995 6655433 33 6788752 211 1 112468999999999875 3
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCC----------------HHHH
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALD----------------DAAV 139 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~----------------~~~~ 139 (182)
+...+++++|++|+|||++++.||+.+. .|+..+.... .+.|+++|+||+|+..... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 4566889999999999999999999997 5877775543 5789999999999864210 0112
Q ss_pred HHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
....+...++..+++|++|||++|.|++++|+.++++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2222233334455689999999999999999999875
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=177.42 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=118.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCC-hhhhhhhCCCCCEEEEEEe
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSI-RPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~-~~~~~~~~~~~~~~i~v~d 93 (182)
||+++|++|+|||||+++++++.+.. +.+|.+ .....+.+ ..+.+.+||+||++++ ...+..+++.+|++|+|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999888765 667664 22333444 4567899999999863 4556778899999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCC-CCHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKG-EGLFEG 169 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~ 169 (182)
++++.+|+.+..|+..+..... ..+.|+++|+||+|+..... .++. ..+ .+...++++++||++| .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEG-EKL----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHH-HHH----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999998887766432 45899999999999864322 1211 111 1222357999999999 599999
Q ss_pred HHHHHHHHh
Q 030122 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~i~ 178 (182)
|.++++.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=171.87 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=126.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||++++++..+.. +.++.+... ..... ..+.+.+||++|++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 489999999999999999999988876 666665222 22233 45789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--CCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
++++.+|..+..|+..+.......++|+++|+||+|+... ....+... +. ....++++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN-LA----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH-HH----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999999887655578999999999999762 22222111 11 11235699999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988764
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=173.67 Aligned_cols=158 Identities=9% Similarity=0.004 Sum_probs=117.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
+||+++|.+|||||||+++|.++.+.. +.++.........+ ..+.+.+||++|++.+...+..++..+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999998866 33333221222223 568899999999998888888888999999999999
Q ss_pred CCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH---HHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 95 SDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDA---AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 95 ~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
+++.+|+.+. .|+..+.... .+.|+++|+||+|+.+..... +....+. .... ...+++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~-~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIM-NEFR-EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHH-HHHh-cccEEEEeccccccCHHHHH
Confidence 9999999986 4656554433 489999999999997654321 1111110 0001 11269999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
+.+.+.+..
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999988754
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=182.59 Aligned_cols=155 Identities=14% Similarity=0.044 Sum_probs=120.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCc-c-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCC-CCCEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVV-S-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFP-NTEAVIY 90 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~-~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~-~~~~~i~ 90 (182)
+||+++|++|+|||||+++|.++.+. . +.++.+ +....+.+ ....+.+||++|++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 48999999999999999999988875 3 667764 44455555 55789999999998 233344556 8999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.... .+....+ ....+++++++||++|.|++++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~SA~~~~gv~~l 154 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC----AVVFDCKFIETSAGLQHNVDEL 154 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH----HHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999999999988877654568999999999998654321 1111111 1223456999999999999999
Q ss_pred HHHHHHHHh
Q 030122 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~i~ 178 (182)
|+++++.+.
T Consensus 155 ~~~l~~~~~ 163 (221)
T cd04148 155 LEGIVRQIR 163 (221)
T ss_pred HHHHHHHHH
Confidence 999998886
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=164.29 Aligned_cols=166 Identities=36% Similarity=0.626 Sum_probs=154.7
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
.++.+++||+++|..++|||||+.+|.+.+.....||.|++...+.+ ..+++++||++|+...++.|..||.+.|++||
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 45678999999999999999999999998888899999999999999 55999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|+|.++...|+++...+.+++.......+|+++.+||.|+......+++...+.+...+.+...+-++|+.+++|+.+-.
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~ 171 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGS 171 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcc
Confidence 99999999999999999999988888999999999999998888888999889888888999999999999999999999
Q ss_pred HHHHHHH
Q 030122 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~i 177 (182)
+|+..-.
T Consensus 172 ~wv~sn~ 178 (185)
T KOG0074|consen 172 DWVQSNP 178 (185)
T ss_pred hhhhcCC
Confidence 9987644
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=173.71 Aligned_cols=158 Identities=14% Similarity=0.193 Sum_probs=120.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
.||+++|++|||||||++++.++.+.. +.||.+.. ...+.+ ..+.+.+|||+|++.+...+..++.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 589999999999999999999998877 77887733 234444 45688999999999999888888999999999999
Q ss_pred CCCcchHHHHHH-HHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHH--------hhcccccCC-CceEEEEecccC
Q 030122 94 SSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSE--------ALELHKIKN-RQWAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~--------~~~~~~~~~-~~~~~~~~Sa~~ 162 (182)
++++++|+.+.. |...+... ..+.|+++|+||+|+...... +++.. ..+....+. ....+++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999988864 66666543 258999999999998653221 11110 000001111 234799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i 177 (182)
|.|++++|+++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-32 Score=176.59 Aligned_cols=161 Identities=17% Similarity=0.262 Sum_probs=135.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe-----------CCEEEEEEECCCCCCChhhhhhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY-----------NNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~-----------~~~~~~i~d~~g~~~~~~~~~~~ 81 (182)
.-+|.+.+|++|+||||++.++..++|.. -..|+|++. +.+.+ ..+.+++|||+|+++|+++.-.+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 44688999999999999999999999988 777888554 44444 34799999999999999999999
Q ss_pred CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
++.+-+++++||+++..||-.+.+|+.++.......+..+++++||+|+.+-+ .+.+......+...++|||++||-
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R---~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR---VVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh---hhhHHHHHHHHHHhCCCeeeeccc
Confidence 99999999999999999999999999999888877899999999999998643 233333333345567779999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030122 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~ 179 (182)
+|.|+++..+.++..+.+
T Consensus 165 tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMK 182 (219)
T ss_pred cCcCHHHHHHHHHHHHHH
Confidence 999999999888877653
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-29 Score=176.58 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=131.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.+...+||+++|++|||||||+++++.+.+.. +.+|.+.......+ ..+.+.+||++|++++..++..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34456899999999999999999998888876 88999976665544 56899999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+++|||+++..+|..+..|+..+.... .++|+++++||+|+.+.....+.... .....+.++++|+++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITF-----HRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999998887553 57999999999998643221121111 12234569999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030122 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~~~~~l~~~i~~~ 180 (182)
+.|.++++.+...
T Consensus 158 ~~f~~ia~~l~~~ 170 (215)
T PTZ00132 158 KPFLWLARRLTND 170 (215)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988653
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=169.59 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=133.0
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
..+.-.+||+++|..-+|||||+-|++.++|.. ...|+. +..+.+.+ ....+.||||+|+++|..+-+.|+++++
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 456667899999999999999999999999877 555554 44555555 4568999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++++|||+++.+||+.+..|..++.... ...+-+++|+||+|+.+.+.. ...........-+..|+++||+++.||
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~V---t~qeAe~YAesvGA~y~eTSAk~N~Gi 163 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQV---TRQEAEAYAESVGALYMETSAKDNVGI 163 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhh---hHHHHHHHHHhhchhheecccccccCH
Confidence 9999999999999999999999997654 367899999999999764332 111111122333445999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
.++|+.+...+.+.
T Consensus 164 ~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 164 SELFESLTAKMIEH 177 (218)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877654
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=169.00 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=124.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.+..+.. ..+|.+.......+ ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999999887 67787755554433 3578999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC--CCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP--GALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++++++.+..|+..+.... ..+.|+++++||+|+. .....+++.+... ...++++++|++++.|++++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 9999999999999988886653 2579999999999996 2223333333222 245679999999999999999
Q ss_pred HHHH
Q 030122 171 DWLS 174 (182)
Q Consensus 171 ~~l~ 174 (182)
+++.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9986
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=170.87 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=124.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
...+|+++|++|||||||++++.++.+.+ ..+|.+. ....+.+.+ +.+.+||++|++.+...+..++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 35799999999999999999999887766 6777763 333445543 678999999999999998999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...... .+....+. +....+++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence 999999999999999987775432 357999999999998754332 22222222 112356999999999999999
Q ss_pred HHHHHHHH
Q 030122 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~i 177 (182)
|+++.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998765
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-29 Score=171.82 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=116.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce-eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF-NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||+++|.++.+.. +.++... ....+.. ..+.+++||+||++.+...+..+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999998854 5555542 2222233 46789999999999988888888899999999999
Q ss_pred CCCcchHHHHHH-HHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH--------HHHhhcccccCCCc-eEEEEecccCC
Q 030122 94 SSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDDAA--------VSEALELHKIKNRQ-WAIFKTCAIKG 163 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (182)
++++.+|..... |+..+.... .+.|+++|+||+|+........ +............+ .+++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999887765 555554433 4899999999999976543211 11111111222222 37999999999
Q ss_pred CCHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSN 175 (182)
Q Consensus 164 ~~i~~~~~~l~~ 175 (182)
.|++++|+++++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=169.66 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=127.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce-eeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF-NVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
.||+++|++|+|||||++++.+..+.. +.||.+. ....+.+. .+.+.+||+||+++++..+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999888766 6676652 23444453 4668999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
.++..+++.+..|+..+.......+.|+++++||+|+.... ..++..... .....+++++||+++.|+.++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876555788999999999987432 222222111 12235799999999999999999
Q ss_pred HHHHHHhcC
Q 030122 172 WLSNTLKSG 180 (182)
Q Consensus 172 ~l~~~i~~~ 180 (182)
++.+.+...
T Consensus 157 ~l~~~~~~~ 165 (180)
T cd04137 157 LLIEEIEKV 165 (180)
T ss_pred HHHHHHHHh
Confidence 999887643
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-29 Score=169.32 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=123.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
||+++|++|||||||++++++..+.. +.++.+ .....+.+. .+.+.+||+||++.+..++..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999887766 666665 333334443 57899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
+++++++.+..|+..+.........|+++++||+|+..... .++..... +....+++++|++++.|++++|++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA-----KEWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHH
Confidence 99999999999998887765446899999999999976322 12222111 122257999999999999999999
Q ss_pred HHHHH
Q 030122 173 LSNTL 177 (182)
Q Consensus 173 l~~~i 177 (182)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=170.18 Aligned_cols=116 Identities=17% Similarity=0.237 Sum_probs=100.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEe-------CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQY-------NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~-------~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
+||+++|++|+|||||++++.++.+.+ +.+|++.. ...+.+ ..+.+.+||++|+++++.++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999877 88898833 334444 34789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhcc------------------CCCCCeEEEEeeCCCCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEE------------------ELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~p~i~v~nK~D~~~~ 133 (182)
+|+|||+++++||+.+..|+..+.... ...++|+++|+||+|+.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999999987532 1246899999999999654
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=171.45 Aligned_cols=161 Identities=18% Similarity=0.132 Sum_probs=136.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|.+|+|||+|..++..+.|.+ +.||++ .+...+.+ ..+.+.|+||+|++.+..+...++.++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 35799999999999999999999999999 899998 44555555 567889999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|+++++.||+.+..++..+.......++|+++|+||+|+...+.. ....+........++++++||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V---~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQV---SEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcccc---CHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999977666677899999999999874322 11112222455667799999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
.+++.+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99998765
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=170.78 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=118.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
.||+++|++|+|||||++++..+.+.+ +.+|.... ...+.. ..+.+.+||++|++.+......+++.+|++++|||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999877766 66665522 223343 34678999999999888777778899999999999
Q ss_pred CCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-------HHHHhhcccccCCC-ceEEEEecccCCC
Q 030122 94 SSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDA-------AVSEALELHKIKNR-QWAIFKTCAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 164 (182)
+++.++|+.+. .|+..+.... .+.|+++|+||+|+....... .+.........+.. ..+++++||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 99999999997 5777776543 579999999999985421100 00000011111222 2369999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+++.+.+..
T Consensus 160 ~v~~~f~~l~~~~~~ 174 (187)
T cd04129 160 GVDDVFEAATRAALL 174 (187)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999976653
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-31 Score=166.24 Aligned_cols=150 Identities=20% Similarity=0.316 Sum_probs=126.5
Q ss_pred EEecCCCChHHHHHHhhcCCCcc--ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 22 SFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 22 viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
++|++++|||||+-|+..+.|-. ..+|+|+++.. +.. .++++++|||+||++|++....|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999999888866 67788866554 333 6789999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-----HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-----DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
+..||+.+..|+.++.++. ...+.+.+++||||+..++- .+.+.+. .++|++++||++|.|++..|
T Consensus 82 nkasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~--------y~ipfmetsaktg~nvd~af 152 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEA--------YGIPFMETSAKTGFNVDLAF 152 (192)
T ss_pred cchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHH--------HCCCceeccccccccHhHHH
Confidence 9999999999999997764 35788999999999965321 1233333 45569999999999999999
Q ss_pred HHHHHHHhcC
Q 030122 171 DWLSNTLKSG 180 (182)
Q Consensus 171 ~~l~~~i~~~ 180 (182)
-.|.+.+++.
T Consensus 153 ~~ia~~l~k~ 162 (192)
T KOG0083|consen 153 LAIAEELKKL 162 (192)
T ss_pred HHHHHHHHHh
Confidence 9999888754
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=155.76 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=133.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
+-..-+|-++||+-|+|||||+++|...+|.. ...|+|+... .+.+ +++++++|||+|+++|+...+.|++++.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34456799999999999999999999999887 8888884433 3333 88999999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
+++|||++.++++..+..|+.+..... .++..+++++||.|+...++. .+..+ .+..+.+..++++|+++|.++
T Consensus 87 almvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak----~faeengl~fle~saktg~nv 161 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAK----EFAEENGLMFLEASAKTGQNV 161 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHH----HHHhhcCeEEEEecccccCcH
Confidence 999999999999999999998876553 367889999999999764432 12222 233455667999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030122 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~~~~~l~~~i~~ 179 (182)
++.|-...+.+.+
T Consensus 162 edafle~akkiyq 174 (215)
T KOG0097|consen 162 EDAFLETAKKIYQ 174 (215)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888877654
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-28 Score=161.07 Aligned_cols=165 Identities=33% Similarity=0.602 Sum_probs=146.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCC------C--ccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGE------V--VSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~------~--~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
..+.|+++|+.++|||||+.+..... . ....+|.|.+..++.+....+.+||.+|++..+++|..||..+|+
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ 95 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHG 95 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhce
Confidence 35789999999999999999876422 1 227889999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-ccCCCceEEEEecccCCCCH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-KIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~i 166 (182)
+|+++|++++++|+.....++.+.......++|+++.+||.|+.+.....++...+++. ....+..++..+||.+|+|+
T Consensus 96 ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv 175 (197)
T KOG0076|consen 96 IIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGV 175 (197)
T ss_pred eEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccH
Confidence 99999999999999999999999888888999999999999999988888887777742 23457788999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
++...|++..+..+
T Consensus 176 ~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 176 KEGIEWLVKKLEKN 189 (197)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988765
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=158.08 Aligned_cols=152 Identities=19% Similarity=0.142 Sum_probs=109.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCC----h-----hhhhhhCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSI----R-----PYWRCYFPNTE 86 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~----~-----~~~~~~~~~~~ 86 (182)
+|+++|.+|+|||||+++|.+..+.. ..+|.++....+.+.+..+.+|||||+... + .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 79999999999999999999887643 233555666666667789999999997421 1 00111122368
Q ss_pred EEEEEEeCCCcch--HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDR--IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|+|+++..+ ++....|+..+.... .+.|+++|+||+|+.......+.. .+ .+....+++++||++|.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIE-EE----EELEGEEVLKISTLTEE 154 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHH-Hh----hhhccCceEEEEecccC
Confidence 9999999998765 356667777765432 489999999999997543322211 11 12245679999999999
Q ss_pred CHHHHHHHHHHHH
Q 030122 165 GLFEGMDWLSNTL 177 (182)
Q Consensus 165 ~i~~~~~~l~~~i 177 (182)
|++++|+++.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999876
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=158.87 Aligned_cols=155 Identities=19% Similarity=0.111 Sum_probs=110.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCE-EEEEEECCCCCC----Chhhhhhh---CCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNI-KFQVWDLGGQTS----IRPYWRCY---FPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~i~d~~g~~~----~~~~~~~~---~~~~~~ 87 (182)
+|+++|.+|||||||+++|.+..... ..+|.......+.+.+. .+.+|||||... .+.+...+ +..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 68999999999999999999765421 22344444445555554 999999999632 22222333 346999
Q ss_pred EEEEEeCCCc-chHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDT-DRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|+|++++ ++++.+..|...+..... ..++|+++|+||+|+.+.....+....+.. .....+++++|++++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCC
Confidence 9999999999 789988888887765432 247899999999999764443332222211 11345699999999999
Q ss_pred HHHHHHHHHHH
Q 030122 166 LFEGMDWLSNT 176 (182)
Q Consensus 166 i~~~~~~l~~~ 176 (182)
++++|+++.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=168.80 Aligned_cols=123 Identities=18% Similarity=0.315 Sum_probs=105.9
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe---------------CCEEEEEEECCCCC
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY---------------NNIKFQVWDLGGQT 72 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---------------~~~~~~i~d~~g~~ 72 (182)
..++...+||+++|+.|||||||+++|.++.+.. +.+|+|... ..+.+ ..+.+.|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 4678888999999999999999999999998877 789998543 44444 24779999999999
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccC-----------CCCCeEEEEeeCCCCCCC
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE-----------LKGAVALIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~i~v~nK~D~~~~ 133 (182)
+|+.++..++++++++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+...
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999999999876521 135899999999999653
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=156.98 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=127.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+|++++|+.++|||+|+..+..+.|.. +.||+- -+...+.+ +.+.+.+|||+||+.|..+++..+.++|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 46899999999999999999999999988 888886 11122233 46789999999999999998889999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHH--------HhhcccccCC-CceEEEEec
Q 030122 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVS--------EALELHKIKN-RQWAIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~--------~~~~~~~~~~-~~~~~~~~S 159 (182)
||++.++.||+.+. +|+.++.... ++.|+++|++|.|+.++... +.+. ...+....+. ....|+++|
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999875 6888887665 89999999999999853211 1111 1111111122 336799999
Q ss_pred ccCCCCHHHHHHHHHHHHhc
Q 030122 160 AIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~~ 179 (182)
|++..|++++|+..++....
T Consensus 161 a~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhc
Confidence 99999999999999988765
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=153.79 Aligned_cols=148 Identities=17% Similarity=0.082 Sum_probs=103.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCC---Ccc---ccCCCceeeEEEEeC-CEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE---VVS---TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~---~~~---~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.|+++|.+|||||||+++|.+.. +.. ...|.+.....+.+. +..+.+|||||++++......++.++|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 58999999999999999999643 222 233444555555554 78999999999998877777778899999999
Q ss_pred EeCCC---cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhcccccCCCceEEEEecccCCC
Q 030122 92 VDSSD---TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 92 ~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|+++ +.+.+.+. .+ ... ...|+++++||+|+...... +++.+.+... .....+++++||++|.
T Consensus 82 ~d~~~~~~~~~~~~~~----~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 82 VAADEGIMPQTREHLE----IL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGE 152 (164)
T ss_pred EECCCCccHhHHHHHH----HH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCc
Confidence 99986 23332221 11 111 22499999999999753211 2222222211 0134679999999999
Q ss_pred CHHHHHHHHHH
Q 030122 165 GLFEGMDWLSN 175 (182)
Q Consensus 165 ~i~~~~~~l~~ 175 (182)
|++++++++.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=166.14 Aligned_cols=159 Identities=17% Similarity=0.131 Sum_probs=118.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc--c-ccCCCceeeEEEEe-CCEEEEEEECCCCCC-------ChhhhhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV--S-TIPTIGFNVETVQY-NNIKFQVWDLGGQTS-------IRPYWRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~-------~~~~~~~~~~~~~~ 87 (182)
.|+++|.||||||||++++.+.... . ...|..+....+.+ ....+.+||+||... ....+..+++.+++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~v 239 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRL 239 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCE
Confidence 5999999999999999999976533 2 34566677777777 567899999999642 12233445678999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCCCCCHHH-HHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALDDAA-VSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|+|+++.++++....|..++..... ..++|+++|+||+|+.+.....+ ....+ ......+++++||++++|
T Consensus 240 lI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 240 LLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGEG 315 (335)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCCC
Confidence 9999999988889999888888765432 35789999999999975432221 11111 112235699999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 030122 166 LFEGMDWLSNTLKSGG 181 (182)
Q Consensus 166 i~~~~~~l~~~i~~~~ 181 (182)
++++++++.+.+.+.+
T Consensus 316 I~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 316 LDELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887654
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-25 Score=151.97 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=107.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC-------Ccc-ccCCC------cee--eE--EEEe-----CCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE-------VVS-TIPTI------GFN--VE--TVQY-----NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~-------~~~-~~~t~------~~~--~~--~~~~-----~~~~~~i~d~~g~~~~~ 75 (182)
+|+++|.+++|||||+++|++.. +.. +.++. |.. .. .+.+ ..+.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 111 22222 211 11 1222 46789999999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccccCCCc
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQ 152 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 152 (182)
..+..++..+|++|+|+|+++..+++....|.... . .++|+++|+||+|+.+.... +++.+.+... .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 99999999999999999999877766665554322 2 46899999999998653221 2232222221 1
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHH
Q 030122 153 WAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
..++++||++|.|++++|+++.+.+
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2489999999999999999998765
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=157.58 Aligned_cols=151 Identities=17% Similarity=0.096 Sum_probs=110.5
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-EEEEEEECCCCCCC---------hhhhhhhCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI---------RPYWRCYFP 83 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~---------~~~~~~~~~ 83 (182)
.++|+++|++|||||||++++.+..+.. ..+|.......+.+.+ ..+.+|||||.... ...+ ..+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~ 119 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVA 119 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHh
Confidence 4799999999999999999999876432 4556665555666633 48999999997432 1111 1356
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|++++.++.....|...+... ...+.|+++|+||+|+.+..... ........+++++||++|
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDDEELE--------ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCChHHHH--------HHhhcCCCceEEEEcCCC
Confidence 899999999999988887766665544332 33578999999999997543221 112234456999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
.|+++++++|.+.+
T Consensus 191 ~gi~~l~~~L~~~~ 204 (204)
T cd01878 191 EGLDELLEAIEELL 204 (204)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998753
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-25 Score=147.96 Aligned_cols=152 Identities=19% Similarity=0.180 Sum_probs=117.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|.+|+|||||++++.+..+.. +.++.+..... +...+ +.+.+||+||+..+..++..++.+++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 699999999999999999999888544 55666644443 55566 88999999999999999999999999999999
Q ss_pred eCCCc-chHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDT-DRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|.... .++.... .|...+..... .+.|+++++||+|+............+.. ....+++++||++|.|+.++|
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSAF 156 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHHH
Confidence 99877 6776665 66666655443 28999999999999764322233322222 223459999999999999999
Q ss_pred HHHH
Q 030122 171 DWLS 174 (182)
Q Consensus 171 ~~l~ 174 (182)
+++.
T Consensus 157 ~~l~ 160 (161)
T TIGR00231 157 KIVE 160 (161)
T ss_pred HHhh
Confidence 9863
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-26 Score=160.36 Aligned_cols=160 Identities=23% Similarity=0.168 Sum_probs=105.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCC-----------CCCChhhhhhh
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGG-----------QTSIRPYWRCY 81 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~ 81 (182)
+...++|+++|.+|+|||||++++.+..+.. ..|+..+....+.+. .+.+||||| +++++..+..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 3456799999999999999999999887654 445444444444444 689999999 45566665555
Q ss_pred CC----CCCEEEEEEeCCCcchH-H---------HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcc
Q 030122 82 FP----NTEAVIYVVDSSDTDRI-Q---------TAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALEL 145 (182)
Q Consensus 82 ~~----~~~~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~ 145 (182)
+. .++++++|+|.+....+ + .....+. .+. ..++|+++|+||+|+.+.. ..+++.+.++.
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 159 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFD-FLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGL 159 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHH-HHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcC
Confidence 53 45788888887543221 0 0011111 112 2579999999999996543 12344444443
Q ss_pred cc-cCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 146 HK-IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 146 ~~-~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
.. ......+++++||++| |+++++++|.+.+.+.
T Consensus 160 ~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 160 YPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred CccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 11 1111235899999999 9999999999987654
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=149.61 Aligned_cols=154 Identities=18% Similarity=0.075 Sum_probs=109.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-c--cCCCceeeEEEEeC---CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-T--IPTIGFNVETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.|+++|++|+|||||+++|..+.+.. . ..|..+....+... +..+.+|||||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999887765 2 23333433444443 689999999999999888888899999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHh---hcccc--cCCCceEEEEecccCCCCHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA---LELHK--IKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~Sa~~~~~i~ 167 (182)
|+++...-+ ....+..+.. .++|+++|+||+|+.... .+.+... +.... .....++++++|+++|.|++
T Consensus 82 d~~~~~~~~-~~~~~~~~~~----~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLAKA----ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHH-HHHHHHHHHH----cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 998753211 1111222211 578999999999987532 2222111 11111 11235679999999999999
Q ss_pred HHHHHHHHHHh
Q 030122 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~~~~~l~~~i~ 178 (182)
++++++.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999988654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=154.22 Aligned_cols=161 Identities=22% Similarity=0.212 Sum_probs=122.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||+++|.++.+.+ +.+|++........ ..+.+.+|||+|+++++.++..|+.+++++++|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 899999999999999999999999988 77887733333222 2678999999999999999999999999999999
Q ss_pred eCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH-HHHhh----------cccccC-CCceEEEEec
Q 030122 93 DSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA-VSEAL----------ELHKIK-NRQWAIFKTC 159 (182)
Q Consensus 93 d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~-~~~~~----------~~~~~~-~~~~~~~~~S 159 (182)
|.++..+ ++....|...+.... ..+.|+++++||+|+........ +...+ ...... .....++++|
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 9999555 555566776765543 24799999999999987643211 11110 000001 1122389999
Q ss_pred cc--CCCCHHHHHHHHHHHHhc
Q 030122 160 AI--KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 160 a~--~~~~i~~~~~~l~~~i~~ 179 (182)
++ ++.++.++|..+.+.+.+
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHH
Confidence 99 999999999999888753
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=151.23 Aligned_cols=134 Identities=20% Similarity=0.274 Sum_probs=106.4
Q ss_pred CCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccC
Q 030122 41 EVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE 115 (182)
Q Consensus 41 ~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 115 (182)
.|.+ +.||+|.+... +.+ ..+.+.+|||+|+++++.++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~- 82 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER- 82 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-
Confidence 4555 88999855543 344 46899999999999999999999999999999999999999999999999887654
Q ss_pred CCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 116 LKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 116 ~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
..++|+++|+||+|+.... ..++... ........++++||++|.|++++|++|++.+.+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~-----~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQ-----KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHH-----HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3578999999999996432 2222211 1122345689999999999999999999988654
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-26 Score=153.92 Aligned_cols=156 Identities=15% Similarity=0.242 Sum_probs=131.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
-+.-+|++++|..++||||+++++|.+-|.. +..|+|.+.. .+.+ ..++..+||++|++.|......|++++.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 3456899999999999999999999999888 8899984443 3333 678889999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-----HHHHHHhhcccccCCCceEEEEecccCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-----DAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++||+-++..||+....|+..+.... .++|.++|-||+|+.+... .+.++..+. ..++.+|++..
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~--------~RlyRtSvked 166 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH--------KRLYRTSVKED 166 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhh--------hhhhhhhhhhh
Confidence 99999999999999999999997765 7899999999999986422 122333332 34899999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|+..+|.+|++.+.+
T Consensus 167 ~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999987764
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-24 Score=167.16 Aligned_cols=160 Identities=14% Similarity=0.053 Sum_probs=112.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc--c--cCCCceeeEEEEeCCEEEEEEECCCCCC----------Chhh-hhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS--T--IPTIGFNVETVQYNNIKFQVWDLGGQTS----------IRPY-WRC 80 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~-~~~ 80 (182)
..++|+++|.+|+|||||+++|++..... . ..|.......+.+.+..+.+|||||..+ +..+ ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 45899999999999999999999887532 2 2232244455666788899999999632 2222 133
Q ss_pred hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecc
Q 030122 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++.+|++++|+|+++..+++... ++..+.. .++|+++|+||+|+.+......+.............++++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 578999999999999988877664 3344432 57899999999999753222222222211111223457899999
Q ss_pred cCCCCHHHHHHHHHHHHhcC
Q 030122 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~~ 180 (182)
++|.|++++|+.+.+.+.+.
T Consensus 365 k~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 365 KTGRAVDKLVPALETALESW 384 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999877543
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=149.23 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=110.2
Q ss_pred EEecCCCChHHHHHHhhcCCC--cc-ccCCCceeeEEEEeC-CEEEEEEECCCCCC----Chhh---hhhhCCCCCEEEE
Q 030122 22 SFFIDNFGNLCDTDRLQMGEV--VS-TIPTIGFNVETVQYN-NIKFQVWDLGGQTS----IRPY---WRCYFPNTEAVIY 90 (182)
Q Consensus 22 viG~~~~GKssl~~~l~~~~~--~~-~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~----~~~~---~~~~~~~~~~~i~ 90 (182)
++|++|||||||+++|.+... .. ...|.......+.+. +..+.+||+||... .+.+ +..++..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998864 22 344555555666666 89999999999732 2222 2345678999999
Q ss_pred EEeCCCc------chHHHHHHHHHHHHhccC------CCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEe
Q 030122 91 VVDSSDT------DRIQTAKEEFHAILEEEE------LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
|+|+++. .+++....|...+..... ..+.|+++|+||+|+.......+.. ...........++.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999988 578887777777754432 2479999999999997543332221 111122334569999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 030122 159 CAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~ 176 (182)
|++++.|++++++++.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-24 Score=158.90 Aligned_cols=155 Identities=19% Similarity=0.132 Sum_probs=113.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-EEEEEEECCCCCCC-------hhhhhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI-------RPYWRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~-------~~~~~~~~~~~~~ 87 (182)
.|+++|.||||||||++++.+..... ...|.......+.+.+ ..+.+||+||.... ...+...++.+++
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ 238 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRV 238 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCE
Confidence 69999999999999999999765322 2445556666677755 89999999997432 1233334567999
Q ss_pred EEEEEeCCCc---chHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 88 VIYVVDSSDT---DRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|+|+++. ++++.+..|..++.... ...+.|+++|+||+|+.+....+++.+.+.. ....+++++||+++
T Consensus 239 ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAktg 314 (329)
T TIGR02729 239 LLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALTG 314 (329)
T ss_pred EEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccCC
Confidence 9999999976 67788877777765542 2357899999999999765333333333221 12346999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
+|++++++++.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998765
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=141.36 Aligned_cols=143 Identities=17% Similarity=0.053 Sum_probs=107.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh--------hhhhCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFPNT 85 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~~~ 85 (182)
++|+++|++|+|||||++++.+..... ...+..+....+...+..+.+|||||...+... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 589999999999999999999876432 222222444555567889999999997665321 23456789
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998877666544322 368999999999999864322 1233455799999999999
Q ss_pred HHHHHHHHHHHH
Q 030122 166 LFEGMDWLSNTL 177 (182)
Q Consensus 166 i~~~~~~l~~~i 177 (182)
++++++++...+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=143.68 Aligned_cols=151 Identities=26% Similarity=0.325 Sum_probs=115.4
Q ss_pred EEecCCCChHHHHHHhhcCCC-cc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 22 SFFIDNFGNLCDTDRLQMGEV-VS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 22 viG~~~~GKssl~~~l~~~~~-~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
++|++|+|||||++++.+... .. ..+|. ........ ....+.+||++|+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 33 44554 44444444 3788999999999988888888899999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++.++.....|+..........+.|+++++||+|+.......... ...........+++.+|+.++.|+.++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 999988888874444444445789999999999997654433321 011111334567999999999999999999863
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=144.54 Aligned_cols=134 Identities=19% Similarity=0.127 Sum_probs=93.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCC-----CChhhhhhhCCCCCEEEEEEe
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT-----SIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~~~i~v~d 93 (182)
||+++|++|+|||||+++|.+..+. +.+|.+. .+.. .+|||||+. .++.+.. .++++|++++|||
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAV-----EYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeE-----EEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 8999999999999999999987653 4444432 2222 689999973 2333333 4789999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
++++.++.. ..|... ...|+++|+||+|+.+.. ..++..+..... ...+++++||++|.|++++|++
T Consensus 72 ~~~~~s~~~-~~~~~~-------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFP-PGFASI-------FVKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCC-hhHHHh-------ccCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHHH
Confidence 999988754 233221 124999999999986522 222222211111 1125899999999999999998
Q ss_pred HH
Q 030122 173 LS 174 (182)
Q Consensus 173 l~ 174 (182)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=149.00 Aligned_cols=157 Identities=24% Similarity=0.284 Sum_probs=116.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCC-CEEEEEEe
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNT-EAVIYVVD 93 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~-~~~i~v~d 93 (182)
+|+++|++|||||||+++|..+.+....+++..+...+.. ....+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998877644444433333333 367899999999999999999999998 99999999
Q ss_pred CCCc-chHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCCCCCHHHHHHhhc-------------c------------
Q 030122 94 SSDT-DRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDDAAVSEALE-------------L------------ 145 (182)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~~~~~~~~~~~~~-------------~------------ 145 (182)
+.+. .++.....|+..++.... ..++|+++++||+|+......+.+.+.+. +
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 778888888777654321 25899999999999976544322211110 0
Q ss_pred -------c-cc--CCCceEEEEecccCCC-CHHHHHHHHHH
Q 030122 146 -------H-KI--KNRQWAIFKTCAIKGE-GLFEGMDWLSN 175 (182)
Q Consensus 146 -------~-~~--~~~~~~~~~~Sa~~~~-~i~~~~~~l~~ 175 (182)
. .+ ....+.+.++|++.+. |++.+.+|+.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0 00 1245788999998876 69999999864
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=144.23 Aligned_cols=155 Identities=21% Similarity=0.134 Sum_probs=113.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-c------------------cCCCceeeEEEEeCCEEEEEEECCCCCCChhhhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-T------------------IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~------------------~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (182)
+|+++|.+|+|||||++++++..... . ..+.......+.+....+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999876554 1 1222233344455678999999999999888888
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhccccc-------
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHKI------- 148 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~~------- 148 (182)
.++..+|++++|+|..++.+... ..++..+.. .+.|+++++||+|+...... +++.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 89999999999999987654332 233333322 57999999999999863332 223333322211
Q ss_pred --CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 149 --KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 --~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.....+++++||++|.|++++++++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 235678999999999999999999998763
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=156.85 Aligned_cols=155 Identities=13% Similarity=0.129 Sum_probs=106.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCC-Chhhh-------hhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS-IRPYW-------RCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~-------~~~~~ 83 (182)
+..+|+++|.+|||||||+++|.+..+.. ..+|.......+.+.+..+.+|||||... +..+. ...+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 34699999999999999999999887753 33344444455666788999999999843 22211 12467
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+... ...++.+.+... .....++++||++|
T Consensus 131 ~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAktg 201 (339)
T PRK15494 131 SADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALSG 201 (339)
T ss_pred hCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccCc
Confidence 8999999999665 344443333322222 35677889999998653 233333333211 12346999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++|+++.+.+.+
T Consensus 202 ~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 202 KNIDGLLEYITSKAKI 217 (339)
T ss_pred cCHHHHHHHHHHhCCC
Confidence 9999999999987653
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=152.80 Aligned_cols=152 Identities=12% Similarity=0.045 Sum_probs=102.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEE-EeCCEEEEEEECCCCCCCh-h-------hhhhhCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETV-QYNNIKFQVWDLGGQTSIR-P-------YWRCYFPNTE 86 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~-~~~~~~~~i~d~~g~~~~~-~-------~~~~~~~~~~ 86 (182)
+|+++|.+|||||||+|+|.+..... ...|.......+ ...+..+.+|||||..... . ....++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 79999999999999999999987643 233333222222 2356789999999975431 1 1344678999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++++|+|+++..+.. ..++..+ .. .+.|+++|+||+|+.+.....+....+... ....+++.+||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~--~~i~~~l-~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG--EFVLTKL-QN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH--HHHHHHH-Hh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999999876654 2222222 22 478999999999997422211111111100 11126999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030122 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~~~~~l~~~i~~ 179 (182)
+++++++.+.+.+
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999887654
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=161.70 Aligned_cols=160 Identities=18% Similarity=0.065 Sum_probs=112.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh-----------hh
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-----------WR 79 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~ 79 (182)
...++|+++|.+|+|||||+++|++..... ...|.......+.+.+..+.+|||||..+.... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 456899999999999999999999876432 222322334455567779999999997654322 13
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC-CCCHHHHHHhhcccccCCCceEEEEe
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG-ALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+++.+|++++|+|+++..+..+.. ++..+.. .+.|+++|+||+|+.. ....+++...+.........++++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 4678899999999999887766543 2333322 4789999999999972 22223333333222222245689999
Q ss_pred cccCCCCHHHHHHHHHHHHhc
Q 030122 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
||++|.|++++|+++.+...+
T Consensus 325 SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=146.64 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=101.0
Q ss_pred EEEEEecCCCChHHHHHHhhc--CCCcc-c------------cCCCc----eeeEEEEeCCEEEEEEECCCCCCChhhhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM--GEVVS-T------------IPTIG----FNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~--~~~~~-~------------~~t~~----~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (182)
+|+++|.+++|||||+++|++ +.+.. + .++.+ .....+.++...+.+|||||+++|...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 44433 1 11222 22234555889999999999999999999
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcc-c-ccCCCceE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALEL-H-KIKNRQWA 154 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~-~-~~~~~~~~ 154 (182)
.+++++|++++|+|+++.. +.....++..+.. .++|+++|+||+|+...... +++...+.. . .....+++
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 9999999999999998742 2333333343322 47899999999999754322 122222110 0 11234678
Q ss_pred EEEecccCCCCHHHH
Q 030122 155 IFKTCAIKGEGLFEG 169 (182)
Q Consensus 155 ~~~~Sa~~~~~i~~~ 169 (182)
++.+||++|.|+.+.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999877443
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=140.23 Aligned_cols=146 Identities=19% Similarity=0.135 Sum_probs=104.0
Q ss_pred EEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChh------hhhhhCC--CCCEEEE
Q 030122 22 SFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYFP--NTEAVIY 90 (182)
Q Consensus 22 viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~--~~~~~i~ 90 (182)
++|.+|+|||||++++.+..... ...|.......+.+.+..+.+|||||+..+.. ++..++. ++|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999876433 22344455666777778999999999887654 3555564 8999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|+|.++++... .++..+.. .++|+++|+||+|+.+..........+. ...+.+++++|+.+|.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 99998765432 33333332 4689999999999976432211111111 1123469999999999999999
Q ss_pred HHHHHHHh
Q 030122 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~l~~~i~ 178 (182)
+++.+.+.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988653
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=158.35 Aligned_cols=149 Identities=19% Similarity=0.103 Sum_probs=110.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCC---------ChhhhhhhCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTS---------IRPYWRCYFP 83 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~---------~~~~~~~~~~ 83 (182)
.++|+++|.+|+|||||+|+|.+..... ..+|..+....+.+ .+..+.+|||+|..+ |+..+ ..+.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~ 267 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVR 267 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHH
Confidence 3799999999999999999999876432 56777777777777 678999999999732 22222 2467
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++|++++|+|++++.+++....|...+ ......+.|+++|+||+|+.+.. ++..... ...+++.+||++|
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L-~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------~~~~~i~iSAktg 337 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVL-EELGAEDIPQLLVYNKIDLLDEP---RIERLEE------GYPEAVFVSAKTG 337 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHH-HHhccCCCCEEEEEEeecCCChH---hHHHHHh------CCCCEEEEEccCC
Confidence 899999999999998877765554433 22223578999999999997532 2211111 1124899999999
Q ss_pred CCHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNT 176 (182)
Q Consensus 164 ~~i~~~~~~l~~~ 176 (182)
.|++++++++.+.
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=162.74 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=106.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCc--eeeEEEEeCCEEEEEEECCCCCC--------ChhhhhhhCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIG--FNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPN 84 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~~ 84 (182)
..+|+++|.+|||||||+++|++..... ..++.. .....+.+.+..+.+|||||.+. +...+..+++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 3689999999999999999999876543 223222 33444556778899999999763 23345667889
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++|+|+|+++..++.. ..+...+ .. .++|+++|+||+|+..... +........ . . ..+++||++|.
T Consensus 118 aD~il~VvD~~~~~s~~~-~~i~~~l-~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g-~---~-~~~~iSA~~g~ 185 (472)
T PRK03003 118 ADAVLFVVDATVGATATD-EAVARVL-RR---SGKPVILAANKVDDERGEA--DAAALWSLG-L---G-EPHPVSALHGR 185 (472)
T ss_pred CCEEEEEEECCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECccCCccch--hhHHHHhcC-C---C-CeEEEEcCCCC
Confidence 999999999998766532 2222223 22 5799999999999864321 111111111 1 1 24789999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+++++.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999987754
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=145.70 Aligned_cols=156 Identities=19% Similarity=0.058 Sum_probs=104.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcC----CCc----c--ccCCCceeeEEEEeC--------------CEEEEEEECCCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG----EVV----S--TIPTIGFNVETVQYN--------------NIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~----~~~----~--~~~t~~~~~~~~~~~--------------~~~~~i~d~~g~~~ 73 (182)
++|+++|++|+|||||+++|+.. .+. + +..|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 48999999999999999999973 111 1 344555554444443 78999999999865
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhcccc--
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHK-- 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~-- 147 (182)
+........+.+|++++|+|+++..+......+. +... .+.|+++++||+|+...... +++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5333334456789999999998754443332221 1121 36799999999998743222 22222211111
Q ss_pred cCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 148 IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.....++++.+||++|.|++++++++.+++.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1224567999999999999999999988764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=158.85 Aligned_cols=148 Identities=15% Similarity=0.044 Sum_probs=109.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc--c-ccC-CCceeeEEEEeCCEEEEEEECCCCCCChhh--------hhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV--S-TIP-TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~--~-~~~-t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~ 83 (182)
..++|+++|++|+|||||+|+|++.... . ... |..+....+.+++..+.+|||||...+... ...+++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 3479999999999999999999987542 2 222 223445566778899999999998665432 245778
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++|++++|+|.+++.+++.. |+..+.. .+.|+++|+||+|+... ....+.. ....+++.+|+++
T Consensus 282 ~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~- 345 (442)
T TIGR00450 282 QADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ- 345 (442)
T ss_pred hCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec-
Confidence 99999999999998887765 6555432 47899999999999653 2222211 2234589999998
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++|+.+.+.+.+
T Consensus 346 ~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 346 LKIKALVDLLTQKINA 361 (442)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999998887754
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=139.87 Aligned_cols=145 Identities=17% Similarity=0.095 Sum_probs=100.5
Q ss_pred EEEecCCCChHHHHHHhhcCCCc--c-c-cCCCceeeEEEEeCCEEEEEEECCCCCCChh--------hhhhhCCCCCEE
Q 030122 21 FSFFIDNFGNLCDTDRLQMGEVV--S-T-IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPNTEAV 88 (182)
Q Consensus 21 ~viG~~~~GKssl~~~l~~~~~~--~-~-~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~~~~ 88 (182)
+++|.+|+|||||+++|++.... . . ..|.........+.+..+.+|||||...+.. .+...+.++|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47999999999999999987532 2 2 2223344555666778999999999988654 334567789999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
++|+|..+..+.... ++...+.. .+.|+++|+||+|+...... ...+... ...+++++|+++|.|+++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~~----~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYSL----GFGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHhc----CCCCeEEEecccCCCHHH
Confidence 999999875443322 22222222 36999999999999764322 1111111 111489999999999999
Q ss_pred HHHHHHHHH
Q 030122 169 GMDWLSNTL 177 (182)
Q Consensus 169 ~~~~l~~~i 177 (182)
+|+++.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=138.63 Aligned_cols=155 Identities=18% Similarity=0.081 Sum_probs=105.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChh-----------hhhhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-----------YWRCY 81 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~~~~~ 81 (182)
.++|+++|.+|+|||||++++.+..... ...+.......+...+..+.+||+||...... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 4799999999999999999999876432 22222233344555777899999999754311 11234
Q ss_pred CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEec
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
+..+|++++|+|.+++.+.... .++..+.. .+.|+++++||+|+.+.. ..+.+...+..........+++.+|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 5789999999999988775443 22222222 468999999999997652 2233333332221122346799999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 030122 160 AIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~ 176 (182)
|+++.|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-23 Score=160.24 Aligned_cols=146 Identities=18% Similarity=0.142 Sum_probs=110.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc--c--ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh--------hhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV--S--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~--~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~ 83 (182)
..++|+++|.+|+|||||+|+|++.... . ...|..+....+.+.+..+.+|||+|...+... ...++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIE 293 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence 3479999999999999999999987642 2 333444556667778889999999998754322 233678
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+..... .....+++.+||++|
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAktg 355 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKTG 355 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeCC
Confidence 8999999999999888775443322 2578999999999997543211 112345899999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++++++.+.+..
T Consensus 356 ~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 356 EGIDELREAIKELAFG 371 (449)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999987753
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-23 Score=138.48 Aligned_cols=141 Identities=21% Similarity=0.175 Sum_probs=101.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChh------hhhhhC--CCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNTE 86 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~~~~ 86 (182)
++|+++|.||||||||+|+|.+....- ...|.......+.+.+..+.++|+||-....+ .+..++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999988443 44555566667777889999999999654432 233343 5899
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC----CHHHHHHhhcccccCCCceEEEEecccC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++|+|+++.+ .-.....++++ .++|+++++||+|..... ..+.+.+.++ ++++.+||++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG--------VPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT--------S-EEEEBTTT
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC--------CCEEEEEeCC
Confidence 999999988743 33344444544 579999999999986532 2345555554 4599999999
Q ss_pred CCCHHHHHHHH
Q 030122 163 GEGLFEGMDWL 173 (182)
Q Consensus 163 ~~~i~~~~~~l 173 (182)
++|++++++.+
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999998764
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-23 Score=159.17 Aligned_cols=157 Identities=20% Similarity=0.187 Sum_probs=112.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc--c-ccCCCceeeEEEEeCCEEEEEEECCCCCC----Chh---hhhhhCCCCCEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV--S-TIPTIGFNVETVQYNNIKFQVWDLGGQTS----IRP---YWRCYFPNTEAV 88 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~----~~~---~~~~~~~~~~~~ 88 (182)
.|+++|.||||||||+++|.+.... . ...|..+....+.+.+..+.+||+||... ... ....+++.++++
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvL 240 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVL 240 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEE
Confidence 7999999999999999999976543 2 45566677777888888999999999532 111 123346789999
Q ss_pred EEEEeCCCc----chHHHHHHHHHHHHhcc----------CCCCCeEEEEeeCCCCCCCCCHHHH-HHhhcccccCCCce
Q 030122 89 IYVVDSSDT----DRIQTAKEEFHAILEEE----------ELKGAVALIFANKQDLPGALDDAAV-SEALELHKIKNRQW 153 (182)
Q Consensus 89 i~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~p~i~v~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~ 153 (182)
|+|+|+++. +.+.....+..++..+. ...+.|+++|+||+|+.+.....+. ...+ ....+
T Consensus 241 v~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g~ 315 (500)
T PRK12296 241 VHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EARGW 315 (500)
T ss_pred EEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcCC
Confidence 999999753 34555544444443332 2357899999999999754332222 2111 22345
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 154 AIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
+++.+||++++|+++++.++.+.+...
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999887653
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-22 Score=152.19 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=111.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc--c-ccCCCceeeEEEEeC-CEEEEEEECCCCCC----Chhh---hhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV--S-TIPTIGFNVETVQYN-NIKFQVWDLGGQTS----IRPY---WRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~----~~~~---~~~~~~~~~~ 87 (182)
.|+++|.||||||||++++++.... . ...|..++...+.+. ...+.+||+||... ...+ +...++.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 7999999999999999999986632 2 344555666666665 78999999999632 2223 2334567999
Q ss_pred EEEEEeCCCc---chHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccC
Q 030122 88 VIYVVDSSDT---DRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+++|+|+++. +.++....|..++.... ...++|+++|+||+|+..... .+.+.+.+. .+++.+||++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t 311 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT 311 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence 9999999865 56777777766665542 235789999999999853211 112222221 4599999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030122 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~ 179 (182)
+.|++++++++.+.+.+
T Consensus 312 geGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 312 GQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987764
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-23 Score=135.67 Aligned_cols=109 Identities=23% Similarity=0.302 Sum_probs=81.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
||+|+|++|||||||+++|++..+.. ..++.+ +....... ....+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988771 222222 33223333 445699999999988888777778899999999
Q ss_pred EeCCCcchHHHHHH---HHHHHHhccCCCCCeEEEEeeCCC
Q 030122 92 VDSSDTDRIQTAKE---EFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 92 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
||++++.+++.+.. |+..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 99999999988754 45555443 25699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-22 Score=152.66 Aligned_cols=152 Identities=14% Similarity=0.074 Sum_probs=107.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-EEEEEEECCCCCCC--hhhhh------hhCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI--RPYWR------CYFPNT 85 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~--~~~~~------~~~~~~ 85 (182)
.+|+++|.+|||||||+|+|.+..... ...|.......+.+.+ ..+.+|||+|..+. ..++. ..+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 589999999999999999999876432 4556666666666644 38899999997442 22222 235789
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceE-EEEecccCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA-IFKTCAIKGE 164 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 164 (182)
|++++|+|++++.+++.+..|...+.. ....++|+++|+||+|+.+... ..+... . ...+ ++.+||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~iL~e-l~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNTVLEE-IDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHH-hccCCCCEEEEEEcccCCCchh-HHHHHH-h------cCCCceEEEeCCCCC
Confidence 999999999999877776544332222 2225789999999999964311 111111 0 1112 5889999999
Q ss_pred CHHHHHHHHHHHHh
Q 030122 165 GLFEGMDWLSNTLK 178 (182)
Q Consensus 165 ~i~~~~~~l~~~i~ 178 (182)
|++++++++.+.+.
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998875
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=141.22 Aligned_cols=162 Identities=18% Similarity=0.096 Sum_probs=105.1
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEeCCEEEEEEECCCCCC----------Chhh
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQYNNIKFQVWDLGGQTS----------IRPY 77 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~~~~~i~d~~g~~~----------~~~~ 77 (182)
..++...++|+++|.+|+|||||++++++..+.. ..++.+.... ... .+..+.+|||||... +...
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 3455677899999999999999999999876433 5555542221 112 247899999999532 2233
Q ss_pred hhhhCCC---CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceE
Q 030122 78 WRCYFPN---TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA 154 (182)
Q Consensus 78 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (182)
...++.. .+++++|+|.+.+.+... .++...+.. .++|+++++||+|+.+....+....... ........+
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~-~~l~~~~~~ 170 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVR-KALKFGDDE 170 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHH-HHHHhcCCc
Confidence 3444443 467888899877644332 112222222 4789999999999975433222221111 111111456
Q ss_pred EEEecccCCCCHHHHHHHHHHHHhc
Q 030122 155 IFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
++++|+++|.|++++++++.+.+.+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999988764
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=156.06 Aligned_cols=156 Identities=17% Similarity=0.102 Sum_probs=110.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccC--CCceeeEEEEeCCE-EEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIP--TIGFNVETVQYNNI-KFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~-~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
..+..+|+++|++++|||||+++|.+..+.. ..+ |..+....+.+.+. .+.+|||||++.|..++..++..+|++|
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 3456799999999999999999999877655 222 33344455555433 8999999999999999998999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc----CCCceEEEEecccCCCC
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI----KNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 165 (182)
+|+|+++...-+... .+... ...++|+++++||+|+.+. ..+.+...+..... .....+++++||++|+|
T Consensus 164 LVVda~dgv~~qT~e-~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVMPQTIE-AISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCCHhHHH-HHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 999988643222211 11211 1257899999999999753 33333333221111 11235799999999999
Q ss_pred HHHHHHHHHH
Q 030122 166 LFEGMDWLSN 175 (182)
Q Consensus 166 i~~~~~~l~~ 175 (182)
++++|+++..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=130.72 Aligned_cols=157 Identities=19% Similarity=0.187 Sum_probs=126.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCC--------cc-----ccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhh
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEV--------VS-----TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~--------~~-----~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~ 78 (182)
......||+++|+.++||||++++++.... .. +..|+..++....+ .+..+.+++||||++|+-+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 345678999999999999999999997663 11 22455577777777 44899999999999999999
Q ss_pred hhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEe
Q 030122 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 79 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
..+++++.++|+++|.+++..+ .....+..+ ... ..+|+++++||.|+.+...++++.+.+.... ...+++..
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeee
Confidence 9999999999999999999888 333333333 322 2399999999999999988988888876653 45679999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 030122 159 CAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~ 176 (182)
++..+++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999998887654
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=135.96 Aligned_cols=142 Identities=20% Similarity=0.165 Sum_probs=94.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhh----hhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW----RCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----~~~~~~~~~~i~v~d~ 94 (182)
+|+++|.+|+|||||++++.+... ...++.+ +.+... .+|||||.......+ ...+.++|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~~~~~-----v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LARKTQA-----VEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cCccceE-----EEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 799999999999999999875432 1222222 222111 269999974333222 2336789999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
++..++. ..|+..+ ..+.|+++++||+|+.+. ..+.+.+..... ....+++++||++|+|++++|+++.
T Consensus 75 ~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCccccc--CHHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHHH
Confidence 9887652 2343332 146799999999998653 333332222111 1124799999999999999999998
Q ss_pred HHHhc
Q 030122 175 NTLKS 179 (182)
Q Consensus 175 ~~i~~ 179 (182)
+.+.+
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 87754
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-23 Score=134.21 Aligned_cols=162 Identities=28% Similarity=0.482 Sum_probs=141.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
++-|++|+|..|+|||||++-|.........||.......+.+.+.+++..|.+|+..-+..|..|+..+|++++.+|+.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~ 98 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAY 98 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehh
Confidence 34589999999999999999999888888999999888899999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc------------ccCCCceEEEEecccCC
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH------------KIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~ 163 (182)
+.++|.+....+..++......+.|+++.+||+|.+.+...++....+.+. ....+.+.+|.||...+
T Consensus 99 d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~ 178 (193)
T KOG0077|consen 99 DQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRK 178 (193)
T ss_pred hHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEcc
Confidence 999999999988888888777899999999999999887766665554322 22346688999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
.|..+.|.|+...+
T Consensus 179 ~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 179 MGYGEGFKWLSQYI 192 (193)
T ss_pred Cccceeeeehhhhc
Confidence 99999999886543
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=133.00 Aligned_cols=152 Identities=18% Similarity=0.095 Sum_probs=101.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccc---cCCCc-eeeEEEEeCCEEEEEEECCCCCCChh--------hhhhhCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVST---IPTIG-FNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPN 84 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~---~~t~~-~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~ 84 (182)
..+|+++|++|+|||||++++.+...... ..+.. .........+..+.+|||||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999998765431 12211 11222233568899999999765432 23345778
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+|++++|+|++++.+ ....++...+.. .+.|+++++||+|+... ....+....+.. .....+++.+|++++
T Consensus 83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~ 154 (168)
T cd04163 83 VDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALKG 154 (168)
T ss_pred CCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEeccC
Confidence 999999999988722 222222222222 36899999999999742 222233322221 122456999999999
Q ss_pred CCHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNT 176 (182)
Q Consensus 164 ~~i~~~~~~l~~~ 176 (182)
.|+++++++|.+.
T Consensus 155 ~~~~~l~~~l~~~ 167 (168)
T cd04163 155 ENVDELLEEIVKY 167 (168)
T ss_pred CChHHHHHHHHhh
Confidence 9999999998765
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=160.84 Aligned_cols=159 Identities=14% Similarity=0.035 Sum_probs=112.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc--c--ccCCCceeeEEEEeCCEEEEEEECCCCCC----------Chhh-hhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV--S--TIPTIGFNVETVQYNNIKFQVWDLGGQTS----------IRPY-WRC 80 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~--~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~-~~~ 80 (182)
..++|+++|.+|||||||+++|++.... . ...|.......+.+.+..+.+|||||..+ +..+ ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 3579999999999999999999988742 2 22333344455666778899999999642 1111 133
Q ss_pred hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecc
Q 030122 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++.+|++++|+|+++..+.+... ++..+.. .++|+++|+||+|+.+....+.+..............+++.+||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 468899999999999988877654 3344432 47899999999999764333333322222111223346899999
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 030122 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~ 179 (182)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988765
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=156.43 Aligned_cols=150 Identities=18% Similarity=0.177 Sum_probs=109.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC-------Ccc-ccCC------Cc--ee--eEEEEe-----CCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE-------VVS-TIPT------IG--FN--VETVQY-----NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~-------~~~-~~~t------~~--~~--~~~~~~-----~~~~~~i~d~~g~~~~~ 75 (182)
+|+++|+.++|||||+++|+... +.. +..+ .| +. ...+.+ ..+.+++|||||+.+|.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 69999999999999999998642 111 2111 13 22 222333 23789999999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccccCCCc
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQ 152 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 152 (182)
..+..+++.+|++|+|+|+++..+.+....|+..+ . .++|+++|+||+|+...... +++.+.++.. .
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~-----~ 154 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD-----A 154 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----c
Confidence 99999999999999999999877777666665433 2 46899999999998753221 2333332221 1
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 153 WAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
..++.+||++|.|++++|+++.+.+.
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 24899999999999999999988764
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=151.66 Aligned_cols=160 Identities=16% Similarity=0.072 Sum_probs=110.5
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChhh-----------hh
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY-----------WR 79 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~ 79 (182)
...++|+++|.+|+|||||++++++..... ..+... .....+.+.+..+.+|||||..+.... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 346899999999999999999999766432 222222 223344457788999999996543211 12
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEec
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++.+|++++|+|++++.+.++.. ++..+.. .+.|+++++||+|+.+.....++...+.........++++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 3567899999999999887765543 2233322 4689999999999974333334433333222223456899999
Q ss_pred ccCCCCHHHHHHHHHHHHhc
Q 030122 160 AIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~~ 179 (182)
|++|.|++++++.+.+...+
T Consensus 326 A~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998876543
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-22 Score=140.17 Aligned_cols=154 Identities=9% Similarity=-0.026 Sum_probs=100.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC--Ccc----ccCCCceeeEEEEeC---------------------------C----
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE--VVS----TIPTIGFNVETVQYN---------------------------N---- 60 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~--~~~----~~~t~~~~~~~~~~~---------------------------~---- 60 (182)
++|+++|+.|+|||||+..+.+.. ... ...++......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997541 111 222222111111111 2
Q ss_pred --EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc----chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 61 --IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 61 --~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
..+.+|||||++.+...+...+..+|++++|+|++++ .+++.+.. +... ...|+++|+||+|+.+..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~----~~~~---~~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAA----LEIM---GLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHH----HHHc---CCCcEEEEEEchhccCHH
Confidence 6899999999998887777778889999999999874 22332222 2111 235799999999997532
Q ss_pred CHHHHHHhhc--ccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 135 DDAAVSEALE--LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 135 ~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
...+..+.+. ........++++.+||++|+|++++|+++.+.+.
T Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 2211111111 0011123457999999999999999999988764
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=132.45 Aligned_cols=151 Identities=19% Similarity=0.109 Sum_probs=107.3
Q ss_pred EEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeC-CEEEEEEECCCCCCChh-------hhhhhCCCCCEEE
Q 030122 22 SFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRP-------YWRCYFPNTEAVI 89 (182)
Q Consensus 22 viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~~-------~~~~~~~~~~~~i 89 (182)
++|++|||||||++++.+..... ...+........... ...+.+||+||...... .+..++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876552 222323333344443 77999999999876543 3445778999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
+|+|..+..+..... +..... ..+.|+++|+||+|+.......................+++++|++++.|+.++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999887766554 222222 268999999999999865444333221222233445678999999999999999
Q ss_pred HHHHHHHH
Q 030122 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~i 177 (182)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-22 Score=133.27 Aligned_cols=157 Identities=16% Similarity=0.217 Sum_probs=136.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
.-.+++++|..|.||||+.++...+.|.. +.+|+|...+...+ ..+++..|||.|++.+..+...|+-+..++|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 35799999999999999999999999988 99999988877766 44999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
+||++..-++..+..|.+++.... .++|+++++||.|..... .+.........+.+.+++.|++.+-|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccch
Confidence 999999999999999999998876 679999999999987532 2233344446677889999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
.|+.+.+..
T Consensus 162 l~LarKl~G 170 (216)
T KOG0096|consen 162 LWLARKLTG 170 (216)
T ss_pred HHHhhhhcC
Confidence 999988754
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-22 Score=129.75 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=131.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
...-.+||.++|++..|||||+-++.++.+.+ +..+.|++.. ++.+ ..+.+.+||.+|++++..+.+..+.++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34456899999999999999999999998866 8888885543 4444 66889999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
++++||++.++++..+..|+.+....+ ..-+| ++|++|.|..-.-++ ++-.....+..++-.+.++|++|+..+.|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 999999999999999999999987654 23344 678999997543322 22222233334455667899999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++.+|..+...+-+
T Consensus 174 v~KIFK~vlAklFn 187 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998877643
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-22 Score=137.85 Aligned_cols=151 Identities=18% Similarity=0.135 Sum_probs=97.2
Q ss_pred cccCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEeCCEEEEEEECCCCCC----------C
Q 030122 8 SVTSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQYNNIKFQVWDLGGQTS----------I 74 (182)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~~~~~i~d~~g~~~----------~ 74 (182)
+..+.++...++|+++|++|+|||||++++++..+.. ..++.+. ....+... -.+.+|||||... +
T Consensus 9 ~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 9 KLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHH
Confidence 3445667788899999999999999999999876433 4444442 22223333 3689999999532 2
Q ss_pred hhhhhhhCC---CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhcccc
Q 030122 75 RPYWRCYFP---NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHK 147 (182)
Q Consensus 75 ~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~ 147 (182)
..+...+++ .++++++|+|.+++-+..... .+..+ .. .+.|+++++||+|+...... +++.+.+...
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~-~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~- 161 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWL-RE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD- 161 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHH-HH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc-
Confidence 222334444 468999999998765544432 22222 22 47899999999999753222 2222332221
Q ss_pred cCCCceEEEEecccCCCCHH
Q 030122 148 IKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~ 167 (182)
....+++.+||++|+|++
T Consensus 162 --~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 --ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred --cCCCceEEEECCCCCCCC
Confidence 123469999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=157.75 Aligned_cols=157 Identities=19% Similarity=0.114 Sum_probs=112.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-cc--CCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TI--PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+...|+++|+.++|||||+++|.+..+.. .. .|..+....+.+.+..+.+|||||++.|..++..++..+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 4466799999999999999999998876654 22 23334445566677899999999999999999989999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-c-cC--CCceEEEEecccCCCCH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-K-IK--NRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~Sa~~~~~i 166 (182)
|||+++...-+....| ... ...++|+++++||+|+... ..+.+...+... . .. ...++++++||++|.|+
T Consensus 367 VVdAddGv~~qT~e~i-~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQTIEAI-NHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHhHHHHH-HHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 9999874221111111 111 1257999999999999753 223332222111 1 11 13478999999999999
Q ss_pred HHHHHHHHHH
Q 030122 167 FEGMDWLSNT 176 (182)
Q Consensus 167 ~~~~~~l~~~ 176 (182)
+++|+++...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998753
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=150.56 Aligned_cols=145 Identities=17% Similarity=0.117 Sum_probs=103.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCC--------ChhhhhhhCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPNT 85 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~~~ 85 (182)
.+|+++|.+|+|||||+++|.+..... ...|.......+.+.+..+.+|||||... ++.....++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 489999999999999999999876432 22233355566777889999999999887 233345677899
Q ss_pred CEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 86 EAVIYVVDSSDTDRIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
|++++|+|..+..+.. .+..|+.. .+.|+++|+||+|..... ....+..... + -.++++||++|
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~D~~~~~--~~~~~~~~lg-~----~~~~~iSa~~g 147 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRK-------SNKPVILVVNKVDGPDEE--ADAYEFYSLG-L----GEPYPISAEHG 147 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH-------cCCcEEEEEECccCccch--hhHHHHHhcC-C----CCCEEEEeeCC
Confidence 9999999998754432 33334332 378999999999975421 1222221111 1 12789999999
Q ss_pred CCHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNT 176 (182)
Q Consensus 164 ~~i~~~~~~l~~~ 176 (182)
.|++++++++...
T Consensus 148 ~gv~~l~~~I~~~ 160 (435)
T PRK00093 148 RGIGDLLDAILEE 160 (435)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999873
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=150.45 Aligned_cols=147 Identities=18% Similarity=0.118 Sum_probs=105.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCC--------ChhhhhhhCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPNTE 86 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~~~~ 86 (182)
+|+++|.+|+|||||+|+|.+..... ...|.......+.+.+..+.+|||||... +......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999876432 22233355566677888999999999633 3345566788999
Q ss_pred EEEEEEeCCCcchHHH--HHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQT--AKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|+|..+..+..+ +..|+.. .++|+++|+||+|+...... ..+...+ .-..++.+||++|.
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~-------~~~piilVvNK~D~~~~~~~--~~~~~~l-----g~~~~~~vSa~~g~ 146 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRK-------SGKPVILVANKIDGKKEDAV--AAEFYSL-----GFGEPIPISAEHGR 146 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHH-------hCCCEEEEEECccCCccccc--HHHHHhc-----CCCCeEEEeCCcCC
Confidence 9999999987544332 3333322 47899999999998754321 1111111 11148999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++++++.+.+.+
T Consensus 147 gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 147 GIGDLLDAILELLPE 161 (429)
T ss_pred ChHHHHHHHHHhcCc
Confidence 999999999987743
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-21 Score=146.55 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=111.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeC-CEEEEEEECCCCCCCh-------hhhhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIR-------PYWRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~-------~~~~~~~~~~~~ 87 (182)
.|+++|.||||||||+|+|++.+... ...|.......+.+. ...+.++||||...-. ......++.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 69999999999999999999765422 334444666666664 4579999999964311 112235778999
Q ss_pred EEEEEeCC---CcchHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 88 VIYVVDSS---DTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ~i~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|+|++ +.+.++....|+..+.... ...+.|+++|+||+|+.......+....+... .....+++.+||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCC
Confidence 99999988 4566777777777765542 23478999999999997543322222222111 011124899999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++++++.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999988754
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-22 Score=138.62 Aligned_cols=158 Identities=19% Similarity=0.104 Sum_probs=112.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc--c-------------------ccCCCceeeEEEE--eCCEEEEEEECCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV--S-------------------TIPTIGFNVETVQ--YNNIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~--~-------------------~~~t~~~~~~~~~--~~~~~~~i~d~~g~~ 72 (182)
...+|+++|+.++|||||+++|...... . +.-|+......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3568999999999999999999953311 0 3445556666677 788999999999999
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhc-cccc
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALE-LHKI 148 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~-~~~~ 148 (182)
.|.......+..+|++|+|+|+.+.-... ....+..+.. .++|+++|+||+|+...... +++...+. ....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~ 156 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE 156 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence 98888888889999999999998764322 2222233322 57899999999999832111 12221221 1111
Q ss_pred CC-CceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 149 KN-RQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.. ..++++.+||.+|.|++++++.+.+.+.
T Consensus 157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 157 NGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred CccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 22 3689999999999999999999988753
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=156.23 Aligned_cols=153 Identities=18% Similarity=0.101 Sum_probs=109.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC---Ccc-c--cCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE---VVS-T--IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~---~~~-~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+.|+++|++++|||||+++|.+.. +.+ + ..|+.+....+.+.+..+.+||+||+++|...+..++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999999643 222 2 3344455556667779999999999999988888889999999999
Q ss_pred EeCCCc---chHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCHHHHH----HhhcccccCCCceEEEEecccCC
Q 030122 92 VDSSDT---DRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDDAAVS----EALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 92 ~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+|+++. .+++.+. ++.. .++| +++|+||+|+.+....+.+. +.+.... ....++++++||++|
T Consensus 81 VDa~~G~~~qT~ehl~-----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~-~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 81 VDADEGVMTQTGEHLA-----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI-FLKNAKIFKTSAKTG 151 (581)
T ss_pred EECCCCCcHHHHHHHH-----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CCCCCcEEEEeCCCC
Confidence 999873 3333321 1222 4677 99999999997543222211 1111110 112567999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++++++...+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999998876654
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.6e-21 Score=141.04 Aligned_cols=155 Identities=16% Similarity=0.104 Sum_probs=103.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEE-EeCCEEEEEEECCCCCCChh--------hhhhhCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETV-QYNNIKFQVWDLGGQTSIRP--------YWRCYFPN 84 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~-~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~ 84 (182)
.-.|+++|++|||||||+|+|++..... ...|.......+ ...+..+.+|||||...... .....+..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999887644 222222222222 22557899999999754321 22335678
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+|++++|+|+++..+ ....++...+.. .+.|+++|+||+|+... ....+..+.+... ....+++.+||+++
T Consensus 85 ~D~il~vvd~~~~~~--~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~~ 156 (292)
T PRK00089 85 VDLVLFVVDADEKIG--PGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALKG 156 (292)
T ss_pred CCEEEEEEeCCCCCC--hhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCCC
Confidence 999999999987322 222233333222 46899999999999742 2222222222211 12346999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++++++.+.+.+
T Consensus 157 ~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 157 DNVDELLDVIAKYLPE 172 (292)
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999999999987653
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-21 Score=123.23 Aligned_cols=162 Identities=19% Similarity=0.252 Sum_probs=127.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc-eeeEEEEe---CCEEEEEEECCCCCCC-hhhhhhhCCCCCE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG-FNVETVQY---NNIKFQVWDLGGQTSI-RPYWRCYFPNTEA 87 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~-~~~~~~~~---~~~~~~i~d~~g~~~~-~~~~~~~~~~~~~ 87 (182)
+--||++.|..++|||+|+.++.-+.... ..||++ ++...+.. ..-.+.++||.|.... ..+-.+|++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 34689999999999999999988655433 788887 66666666 2346889999998777 5678889999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+++||+..+++||+.+...-+.|-.......+|+++.+||+|..+... +....+..|++...+..+++++.+...+-
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~---vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE---VDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh---cCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 999999999999987776666665555667899999999999975432 22233344555566779999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030122 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~~~~~l~~~i~~~ 180 (182)
+.|..+.+.+-.-
T Consensus 165 epf~~l~~rl~~p 177 (198)
T KOG3883|consen 165 EPFTYLASRLHQP 177 (198)
T ss_pred hHHHHHHHhccCC
Confidence 9999999877643
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-21 Score=155.12 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=110.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-c--cCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-T--IPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.+..+|+++|++++|||||+++|.+..+.. . ..|..+....+.+ .+..+.+|||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 355689999999999999999999877654 2 2232222333333 35899999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-c-cC--CCceEEEEecccCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-K-IK--NRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~Sa~~~ 163 (182)
+|+|+|+++...-+.... +..+ ...++|+++++||+|+... ..+.+...+... . .. ...++++++||++|
T Consensus 322 aILVVDA~dGv~~QT~E~-I~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQTIEA-INYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChhhHHH-HHHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 999999887432222211 1222 1257899999999999753 233333332111 0 01 13468999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
.|++++++++....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987653
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=134.74 Aligned_cols=150 Identities=19% Similarity=0.121 Sum_probs=104.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCCh-------hhhhhhCCCCCEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PYWRCYFPNTEAV 88 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~~~~ 88 (182)
+|+++|++|+|||||+++|.+..... ...|.......+.+.+..+++||+||..... .....+++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 79999999999999999999865322 3445556667777888999999999975432 1334578899999
Q ss_pred EEEEeCCCcch-HHHHHHHHH----------------------------------------HHHhcc-------------
Q 030122 89 IYVVDSSDTDR-IQTAKEEFH----------------------------------------AILEEE------------- 114 (182)
Q Consensus 89 i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~------------- 114 (182)
++|+|++++.. .+.+...+. .++...
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987652 222222221 111110
Q ss_pred -----------CCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 115 -----------ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 115 -----------~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
...-+|+++|+||+|+... ++.. .+. .. ..++++||++|.|++++|+.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~-~~~----~~--~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELD-LLA----RQ--PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHH-HHh----cC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0123699999999998643 2222 111 11 23899999999999999999988653
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=155.33 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=103.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCc----eeeEEEEeCCEEEEEEECCCCCC--------ChhhhhhhC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 82 (182)
....+|+++|.+|+|||||+|+|++.......++.| .......+.+..+.+|||||.+. +......++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 344689999999999999999999876543233333 22233444778999999999764 233445577
Q ss_pred CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccC
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|.++.-+..+ ..|...+ .. .++|+++|+||+|+.... ....+...+. .. ..+++||++
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~L-r~---~~~pvIlV~NK~D~~~~~--~~~~~~~~lg-~~----~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD-ERIVRML-RR---AGKPVVLAVNKIDDQASE--YDAAEFWKLG-LG----EPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHH-Hh---cCCCEEEEEECcccccch--hhHHHHHHcC-CC----CeEEEECCC
Confidence 89999999999976422111 1233333 22 579999999999986432 1222221111 11 257899999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030122 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~ 179 (182)
|.|++++|+++++.+.+
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999987754
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=148.83 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=108.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC--Ccc----------------ccCCCceeeEEEEe-----CCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE--VVS----------------TIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~--~~~----------------~~~t~~~~~~~~~~-----~~~~~~i~d~~g~~~~~ 75 (182)
+|+++|+.++|||||+.+|+... +.. +.-|+......+.| +.+.+++|||||+.+|.
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~ 88 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS 88 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence 79999999999999999998632 110 12222222233444 26889999999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccccCCCc
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQ 152 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 152 (182)
..+..+++.+|++|+|+|+++....+....|.... . .++|+++|+||+|+...... +++.+.++.. .
T Consensus 89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-----~ 158 (600)
T PRK05433 89 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-----A 158 (600)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC-----c
Confidence 99999999999999999999876665555553322 1 47899999999998754321 2232222221 1
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 153 WAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
..++.+||++|.|++++++++.+.+.
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 24899999999999999999988764
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-20 Score=132.00 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=110.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc--------------c-------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV--------------S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++|+..... + +..|+......+.+++..+.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999863210 0 122233444566678999999999999999988
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---HHHHHHhhc----------
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALE---------- 144 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---~~~~~~~~~---------- 144 (182)
+..+++.+|++++|+|.++.... ....++..+.. .++|+++++||+|+..... .+++...+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999876443 33344444432 4789999999999875321 111211111
Q ss_pred ----------------------------------------------ccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 145 ----------------------------------------------LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 145 ----------------------------------------------~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
.......-+|++..||.++.|++.+++.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 001123458999999999999999999998865
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=145.27 Aligned_cols=154 Identities=15% Similarity=0.103 Sum_probs=101.2
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCc----------------------------------cccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVV----------------------------------STIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~~ 60 (182)
..+++|+++|++++|||||+++|+..... .+.-|+......+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 34689999999999999999999842210 13334445555666688
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---- 136 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---- 136 (182)
..+.+|||||+++|.......+..+|++++|+|++++..+.....+...+.... ...|+++++||+|+.+....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence 999999999999886655555788999999999987322211111111222221 23479999999999752211
Q ss_pred --HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 137 --AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 137 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
+++.+.+....+....++++.+||++|+|+++..
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 1222222222222234689999999999998743
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-20 Score=148.91 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=99.0
Q ss_pred ecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChhh------hhhhC--CCCCEEEEEE
Q 030122 24 FIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--PNTEAVIYVV 92 (182)
Q Consensus 24 G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~~~~~~i~v~ 92 (182)
|.+|+|||||+|++.+..... ..|+.. .....+.+++..+++|||||++++... ...++ .++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 899999999999999876533 334333 344455667788999999999887543 33333 3789999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|.++.++ ...+..++.+ .+.|+++|+||+|+.+........+.+. +..+++++++||++|+|+++++++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHHHH
Confidence 9887443 2333333332 4789999999999864332211111111 112356999999999999999999
Q ss_pred HHHHH
Q 030122 173 LSNTL 177 (182)
Q Consensus 173 l~~~i 177 (182)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98754
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=144.71 Aligned_cols=154 Identities=13% Similarity=0.043 Sum_probs=101.2
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcC--CCcc--------------------------------ccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMG--EVVS--------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|+.++|||||+++|+.. .... +..|+......+.+.+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 34689999999999999999999852 1110 1223334444555578
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--H-
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALD--D- 136 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~- 136 (182)
..+.+||+||+++|.......+..+|++++|+|+++.+++.... .+...+... ....|+++++||+|+.+... .
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEEChhccCccHHHHH
Confidence 99999999999988766666778999999999999875431111 111112222 13458999999999974221 1
Q ss_pred ---HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 137 ---AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
.++.+.+.........++++++||++|.|+.+.+
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1222222222222235789999999999998633
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-20 Score=147.21 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=104.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEEe----------------CCEEEEEEECCCCCCCh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQY----------------NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~----------------~~~~~~i~d~~g~~~~~ 75 (182)
..-|+++|++++|||||+++|.+..+.. ..++++........ ....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3579999999999999999999877653 23344432222211 11238899999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--------------CHHH
Q 030122 76 PYWRCYFPNTEAVIYVVDSSD---TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--------------DDAA 138 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--------------~~~~ 138 (182)
.++..+++.+|++++|+|+++ +.+++.+. .+ .. .++|+++++||+|+.+.. ....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l-~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HH-HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 999999999999999999987 34443332 11 11 478999999999996421 0001
Q ss_pred HH-----------Hhhccccc----------CCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 139 VS-----------EALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 139 ~~-----------~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
+. ..+....+ ....++++.+||++|+|+++++.++...
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 10 01111111 1235789999999999999999988643
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=148.97 Aligned_cols=150 Identities=16% Similarity=0.078 Sum_probs=104.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh----------hhhhC-
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY----------WRCYF- 82 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------~~~~~- 82 (182)
.++|+++|.+|||||||+|++.+..... ...|.+.....+.+.+.++.+||+||..++... ...++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~ 82 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHh
Confidence 4789999999999999999999765432 222333334445567889999999998776431 22232
Q ss_pred -CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 83 -PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 83 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
..+|++++|+|.++.++- ..+..++.+ .++|+++++||+|+.+........+.+. +..+++++.+|++
T Consensus 83 ~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA~ 151 (772)
T PRK09554 83 SGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVST 151 (772)
T ss_pred ccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEee
Confidence 478999999999886542 234444433 4799999999999875433211111111 1123569999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 030122 162 KGEGLFEGMDWLSNTL 177 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i 177 (182)
+|+|++++.+.+.+..
T Consensus 152 ~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 152 RGRGIEALKLAIDRHQ 167 (772)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999998887654
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=130.97 Aligned_cols=156 Identities=14% Similarity=0.071 Sum_probs=105.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEE-EeCCEEEEEEECCCCCCCh--------hhhhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETV-QYNNIKFQVWDLGGQTSIR--------PYWRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~-~~~~~~~~i~d~~g~~~~~--------~~~~~~~~ 83 (182)
+...|+++|.||+|||||+|++++.+..- ...|..-...-+ ..+...+.++||||-.+-+ ......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 34579999999999999999999998765 333333222222 2278899999999953321 12334567
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.+|+++||+|+++.-.- ...+.-+.+.. .+.|+++++||+|...... ...+.+.+..... -..++.+||++
T Consensus 85 dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~---f~~ivpiSA~~ 156 (298)
T COG1159 85 DVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLP---FKEIVPISALK 156 (298)
T ss_pred cCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCC---cceEEEeeccc
Confidence 89999999999874321 22222222222 4689999999999886544 2333333322211 12599999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030122 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~ 179 (182)
|.|++.+.+.+...+.+
T Consensus 157 g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 157 GDNVDTLLEIIKEYLPE 173 (298)
T ss_pred cCCHHHHHHHHHHhCCC
Confidence 99999999998877654
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=144.86 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=113.1
Q ss_pred EEEEEecCCCChHHHHHHhhcC--CCcc-----------------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG--EVVS-----------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~--~~~~-----------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (182)
+|+++|+.++|||||+++|+.. .+.. +..|+......+.+++.++.+|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6999999999999999999862 2211 22333344456777899999999999999998889
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhccccc--CCCceE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKI--KNRQWA 154 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~--~~~~~~ 154 (182)
.+++.+|++++|+|+.+. .......|+..+.. .++|+++|+||+|+...... +++.+.+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999763 23444556565544 47899999999998754321 222232221111 223578
Q ss_pred EEEecccCCC----------CHHHHHHHHHHHHh
Q 030122 155 IFKTCAIKGE----------GLFEGMDWLSNTLK 178 (182)
Q Consensus 155 ~~~~Sa~~~~----------~i~~~~~~l~~~i~ 178 (182)
++.+||++|. |+..+|+.+++.+.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 9999999995 79999999888764
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=135.93 Aligned_cols=146 Identities=16% Similarity=0.069 Sum_probs=107.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCCh---------hhhhhhCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR---------PYWRCYFPN 84 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~~~~~~~ 84 (182)
..|+++|.||+|||||+|||++....- ..-|-...+....+.+..|.++||+|-+... .+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 579999999999999999999988654 3444447777788888889999999976432 244556778
Q ss_pred CCEEEEEEeCCCcch-H-HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccC
Q 030122 85 TEAVIYVVDSSDTDR-I-QTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s-~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
||++|||+|....-+ . +.+.++++ . .++|+++|+||+|...... ...+.+.+..- ..+.+||.+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr----~---~~kpviLvvNK~D~~~~e~--~~~efyslG~g-----~~~~ISA~H 149 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILR----R---SKKPVILVVNKIDNLKAEE--LAYEFYSLGFG-----EPVPISAEH 149 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH----h---cCCCEEEEEEcccCchhhh--hHHHHHhcCCC-----CceEeehhh
Confidence 999999999876433 2 22333322 1 5799999999999873221 22222222222 389999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i 177 (182)
|.|+.+++++++..+
T Consensus 150 g~Gi~dLld~v~~~l 164 (444)
T COG1160 150 GRGIGDLLDAVLELL 164 (444)
T ss_pred ccCHHHHHHHHHhhc
Confidence 999999999999876
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=142.96 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=110.3
Q ss_pred eEEEEEecCCCChHHHHHHhhc--CCCccc-------------cCCCc----eeeEEEEeCCEEEEEEECCCCCCChhhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM--GEVVST-------------IPTIG----FNVETVQYNNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~--~~~~~~-------------~~t~~----~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 78 (182)
-+|+++|+.++|||||+++|+. +.+... ..+.+ .....+.+++..+.+|||||+..|...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 3799999999999999999996 333221 12233 2233455688999999999999999999
Q ss_pred hhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcc-ccc-CCCce
Q 030122 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALEL-HKI-KNRQW 153 (182)
Q Consensus 79 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~-~~~-~~~~~ 153 (182)
..+++.+|++|+|+|+.+....+ ...++..... .++|.++++||+|....... +++.+.+.. ... ....+
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 99999999999999998753322 2233333333 57899999999999765432 233333311 111 22457
Q ss_pred EEEEecccCCC----------CHHHHHHHHHHHHh
Q 030122 154 AIFKTCAIKGE----------GLFEGMDWLSNTLK 178 (182)
Q Consensus 154 ~~~~~Sa~~~~----------~i~~~~~~l~~~i~ 178 (182)
+++.+||.+|. |+..+++.+++.+.
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 89999999998 58888888877653
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=122.76 Aligned_cols=150 Identities=18% Similarity=0.074 Sum_probs=96.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEeCCEEEEEEECCCCCC----------ChhhhhhhCC--
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQYNNIKFQVWDLGGQTS----------IRPYWRCYFP-- 83 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~~~~~i~d~~g~~~----------~~~~~~~~~~-- 83 (182)
.|+++|++|+|||||++.+.++.... ..++.+.... .+... ..+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 38999999999999999999655544 5555543222 22223 3899999999543 2333333443
Q ss_pred -CCCEEEEEEeCCCcch--HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEec
Q 030122 84 -NTEAVIYVVDSSDTDR--IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTC 159 (182)
Q Consensus 84 -~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 159 (182)
..+++++++|.....+ ...+..|+.. .+.|+++++||+|+.................. .....+++.+|
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 4578889999876532 2233344332 35899999999998643322222212111100 12345699999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 030122 160 AIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~ 176 (182)
++++.|+.++++++.+.
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999999875
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=139.74 Aligned_cols=158 Identities=13% Similarity=0.007 Sum_probs=102.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc------ccCCCceeeEEE--------------Ee------------CCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS------TIPTIGFNVETV--------------QY------------NNIKF 63 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~--------------~~------------~~~~~ 63 (182)
.+++|+++|++++|||||+++|.+..... +.-|+......+ .. ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46899999999999999999997532211 222222111110 01 14689
Q ss_pred EEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHH
Q 030122 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAV 139 (182)
Q Consensus 64 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~ 139 (182)
.+||+||+++|...+......+|++++|+|+++..........+..+ ... ...|+++++||+|+.+.... +++
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 99999999999888888888999999999998643111222222222 211 23579999999999753222 112
Q ss_pred HHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
...+... ....++++++||++|+|+++++++|...+.
T Consensus 160 ~~~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred Hhhhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 1111110 112568999999999999999999987643
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=130.19 Aligned_cols=147 Identities=14% Similarity=0.112 Sum_probs=96.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC------------------------------cc----ccCCCceeeEEEEeCCEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV------------------------------VS----TIPTIGFNVETVQYNNIKFQ 64 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~------------------------------~~----~~~t~~~~~~~~~~~~~~~~ 64 (182)
+|+++|+.++|||||+.+|+.... .+ +.-|.......+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999963210 00 22233344455666889999
Q ss_pred EEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcch---H---HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-C--
Q 030122 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---I---QTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-D-- 135 (182)
Q Consensus 65 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~-- 135 (182)
+|||||+..+...+...++.+|++++|+|+++... | ......+... .. ....|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHH
Confidence 99999998877777777788999999999987421 1 1111221212 21 1346899999999997421 1
Q ss_pred -HHHHHH----hhcccccCCCceEEEEecccCCCCHHH
Q 030122 136 -DAAVSE----ALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 136 -~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
.+++.. .+.........++++.+||++|.|+++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 122222 222222334568899999999999873
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-22 Score=132.06 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=129.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.+.-.+++|+|..|+|||+++.++..+.+.. +..|+| +..+...+ .-+++++||+.||++|..+..-|++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 3456799999999999999999999999988 899998 33344455 34688999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhcc---CCCCCeEEEEeeCCCCCCCCCHH--HHHHhhcccccCCCceEEEEecccC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPGALDDA--AVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
..+|||+++..+|+...+|..++.... .....|+++..||||....-..+ ...+.+.. .+.-..++++|+|.
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k---engf~gwtets~Ke 178 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK---ENGFEGWTETSAKE 178 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh---ccCccceeeecccc
Confidence 999999999999999999998875442 33557899999999986532111 12222211 12333599999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030122 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~ 179 (182)
+.++.|+.+.+++.+..
T Consensus 179 nkni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 179 NKNIPEAQRELVEKILV 195 (229)
T ss_pred ccChhHHHHHHHHHHHh
Confidence 99999999999987764
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-19 Score=133.29 Aligned_cols=159 Identities=16% Similarity=0.054 Sum_probs=114.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCC----------Chh-hhhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS----------IRP-YWRC 80 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~-~~~~ 80 (182)
..+||+++|.||+|||||+|++++.+-.- ...|...-...+++++.++.++||+|..+ |.. -...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 56999999999999999999999887443 33344444555666899999999999643 211 1233
Q ss_pred hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--CCHHHHHHhhcccccCCCceEEEEe
Q 030122 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+..+|.+++|+|++.+-+-++..- ..+.. ..+.++++++||+|+.+. ...++....+......-...+.+.+
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~i--a~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRI--AGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHHH--HHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 4567999999999998766544332 12222 268899999999999875 2234444444433334456689999
Q ss_pred cccCCCCHHHHHHHHHHHHhc
Q 030122 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
||++|.|++++|+.+......
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EecCCCChHHHHHHHHHHHHH
Confidence 999999999999998876553
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-19 Score=133.66 Aligned_cols=135 Identities=24% Similarity=0.368 Sum_probs=108.5
Q ss_pred ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhcc
Q 030122 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~ 114 (182)
+.||.|+....+.+.+..+.+||++|+...+..|..++.+++++|||+|+++ ..++.+....++.+....
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 5678888888898999999999999999999999999999999999999986 357889999999999888
Q ss_pred CCCCCeEEEEeeCCCCCCC-----------------CCHHHH----HHhhcc-ccc-CCCceEEEEecccCCCCHHHHHH
Q 030122 115 ELKGAVALIFANKQDLPGA-----------------LDDAAV----SEALEL-HKI-KNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 115 ~~~~~p~i~v~nK~D~~~~-----------------~~~~~~----~~~~~~-~~~-~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
...++|+++++||.|+... .+.+.. ...+.. ... ..+.+..+.|||.+..++..+|+
T Consensus 248 ~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~ 327 (342)
T smart00275 248 WFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFD 327 (342)
T ss_pred cccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHH
Confidence 8889999999999998632 111111 111111 111 23678889999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
.+.+.+.+
T Consensus 328 ~v~~~I~~ 335 (342)
T smart00275 328 AVKDIILQ 335 (342)
T ss_pred HHHHHHHH
Confidence 98887764
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-19 Score=125.96 Aligned_cols=146 Identities=16% Similarity=0.060 Sum_probs=92.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----------------------------------ccCCCceeeEEEEeCCEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----------------------------------TIPTIGFNVETVQYNNIKFQ 64 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (182)
||+++|.+|+|||||+++|+...-.- +..|.......+.+.+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999997532110 11222233344555788999
Q ss_pred EEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHh
Q 030122 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEA 142 (182)
Q Consensus 65 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~ 142 (182)
+|||||+++|...+...+..+|++++|+|+++...-+. ...+. +.... ...++++|+||+|+.+.... ..+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~-~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSY-ILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHH-HHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887666667889999999999987532111 11111 11211 22457889999998753211 112111
Q ss_pred hc--ccccCCCceEEEEecccCCCCHHH
Q 030122 143 LE--LHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 143 ~~--~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+. .........+++.+||++|.|+.+
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 11 011111235699999999999875
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=139.76 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=102.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEEeC----C-------E-----EEEEEECCCCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQYN----N-------I-----KFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~~----~-------~-----~~~i~d~~g~~~~ 74 (182)
+...|+++|++++|||||+++|.+..... ..+++|......... + . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 44589999999999999999998765433 223444332222110 0 1 2789999999999
Q ss_pred hhhhhhhCCCCCEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--------------HH
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSD---TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DA 137 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--------------~~ 137 (182)
..++...++.+|++++|+|+++ +.+++.+.. + .. .++|+++++||+|+...-. ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~-~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----L-KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----H-HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 9998888899999999999987 445544321 1 11 4789999999999852100 00
Q ss_pred -----------HHHHhhccccc----------CCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 138 -----------AVSEALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 138 -----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++...+....+ ....++++.+||.+|+|+++++..+..
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 01111111111 024578999999999999999988764
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-19 Score=132.05 Aligned_cols=136 Identities=25% Similarity=0.370 Sum_probs=109.4
Q ss_pred ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc----------chHHHHHHHHHHHHhcc
Q 030122 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----------DRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~ 114 (182)
+.||.|+....+.+++..+.+||++|+...+..|..++.+++++|+|+|+++- .++.+....+..+....
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR 224 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc
Confidence 56788888888988999999999999999999999999999999999999873 67888899999999888
Q ss_pred CCCCCeEEEEeeCCCCCCC------------------CCHHHH----HHhhcc-cccCCCceEEEEecccCCCCHHHHHH
Q 030122 115 ELKGAVALIFANKQDLPGA------------------LDDAAV----SEALEL-HKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 115 ~~~~~p~i~v~nK~D~~~~------------------~~~~~~----~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
...++|+++++||.|+... ...+.. ...+.. .....+.+..+.++|.+..++..+|+
T Consensus 225 ~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~ 304 (317)
T cd00066 225 WFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFD 304 (317)
T ss_pred cccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHH
Confidence 8889999999999996532 111111 111111 11124678889999999999999999
Q ss_pred HHHHHHhcC
Q 030122 172 WLSNTLKSG 180 (182)
Q Consensus 172 ~l~~~i~~~ 180 (182)
.+.+.+...
T Consensus 305 ~v~~~i~~~ 313 (317)
T cd00066 305 AVKDIILQN 313 (317)
T ss_pred HHHHHHHHH
Confidence 998887653
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=126.04 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=79.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC--cc-----------------------ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV--VS-----------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~--~~-----------------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
+|+++|++|+|||||+++|+.... .. +..++......+.+++.++.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 699999999999999999984211 10 11122233446677899999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
|......+++.+|++|+|+|+++.... ....++... . ..++|+++++||+|+...
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-R---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-H---hcCCCEEEEEECCccCCC
Confidence 887777778899999999999875332 222333322 2 257899999999998654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=119.79 Aligned_cols=159 Identities=21% Similarity=0.285 Sum_probs=123.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCC---CCCEEEEEEeC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP---NTEAVIYVVDS 94 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~~~~i~v~d~ 94 (182)
-.|+++|+.+||||+|+.+|..+.+....+.+..+.....+..-...++|.|||++.+.....++. .+-++|||+|.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDS 118 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDS 118 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEec
Confidence 479999999999999999999997777777777777777776667899999999999987777777 68999999997
Q ss_pred CC-cchHHHHHHHHHHHHhcc--CCCCCeEEEEeeCCCCCCCCCHHHHHHhhc---------------------------
Q 030122 95 SD-TDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDDAAVSEALE--------------------------- 144 (182)
Q Consensus 95 ~~-~~s~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~--------------------------- 144 (182)
.. .....+...++..++... ....+|++++.||.|+..++..+-+.+.+.
T Consensus 119 a~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tl 198 (238)
T KOG0090|consen 119 ATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTL 198 (238)
T ss_pred cccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccc
Confidence 54 344777778877777665 457789999999999987765543332220
Q ss_pred --------ccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 145 --------LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 145 --------~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
...+....+.+.++|++++ +++++-+|+.+.+
T Consensus 199 g~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 199 GKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0011224577899999998 8999999997753
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-19 Score=123.71 Aligned_cols=145 Identities=17% Similarity=0.073 Sum_probs=95.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCC----------c---------cccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEV----------V---------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+++|+++|..++|||||+++|+.... . .+.-|+......+.+++..+.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57999999999999999999985310 0 0222222222333446788999999999888776
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-H----HHHHhhcccccCCC
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKIKNR 151 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 151 (182)
....+..+|++++|+|+...-.- .....+..+.. .++| +++++||+|+...... + ++...+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 67778899999999998764321 22222233322 4566 7899999998643221 1 23333322223334
Q ss_pred ceEEEEecccCCCCH
Q 030122 152 QWAIFKTCAIKGEGL 166 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~i 166 (182)
.++++.+||.+|.++
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 688999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=122.55 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=98.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-----------------ccC-------CCceee-----------------EEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-----------------TIP-------TIGFNV-----------------ETVQ 57 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-----------------~~~-------t~~~~~-----------------~~~~ 57 (182)
||+++|+.++|||||+++|..+.+.+ +.. .+|++. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999755432 001 111111 1122
Q ss_pred eCCEEEEEEECCCCCCChhhhhhhCC--CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC
Q 030122 58 YNNIKFQVWDLGGQTSIRPYWRCYFP--NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~ 135 (182)
..+..+.++|+||+++|.......+. .+|++++|+|+..... .....++..+.. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHH
Confidence 35678999999999988654444443 6899999999876533 222223232322 4689999999999865322
Q ss_pred H----HHHHHhhccccc---------------------CCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 136 D----AAVSEALELHKI---------------------KNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 136 ~----~~~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
. .++.+.+..... ....+++|.+|+.+|+|++++...|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 2 223333332111 223458999999999999998877643
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.8e-19 Score=124.92 Aligned_cols=158 Identities=17% Similarity=0.201 Sum_probs=103.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEe-CCEEEEEEECCCCCCChh-----hhhhhCCCCCEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRP-----YWRCYFPNTEAV 88 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~-----~~~~~~~~~~~~ 88 (182)
||+++|+.||||||+.+-+.++-.+. ..+|..+....+.. ....+.+||.||+..+.. .....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999888665433 56888888888876 778999999999976543 356788999999
Q ss_pred EEEEeCCCcch---HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHH----Hhhccccc--CCCceEEEEec
Q 030122 89 IYVVDSSDTDR---IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS----EALELHKI--KNRQWAIFKTC 159 (182)
Q Consensus 89 i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~S 159 (182)
|||+|+...+- +..+...+..+.+.. +++.+.++++|+|+..+....++. +.+..... ....+.++.||
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999984432 333344444454444 799999999999997643322221 11111111 11147899999
Q ss_pred ccCCCCHHHHHHHHHHHHhc
Q 030122 160 AIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~~ 179 (182)
-.+ +.+-+.+..+++.+..
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp TTS-THHHHHHHHHHHTTST
T ss_pred CcC-cHHHHHHHHHHHHHcc
Confidence 998 6899999999887653
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-19 Score=115.98 Aligned_cols=134 Identities=17% Similarity=0.131 Sum_probs=90.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCCh----hhhhhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR----PYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~----~~~~~~~~~~~~~i~v~d~ 94 (182)
||++||+.|||||||+++|.+.... +..|-.+.+. =.++||||-.-.. .-......+||.+++|.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i~~~--------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAIEYY--------DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-cCccceeEec--------ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 8999999999999999999876653 3333222111 1348999954322 2222234589999999999
Q ss_pred CCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC-CCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 95 SDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPG-ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 95 ~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
+++.+ |..-. .. ..+.|+|-|+||+|+.. ..+.+...+.+.....+ .+|.+|+.+|+|++++.++
T Consensus 74 t~~~~~~pP~f------a~---~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 74 TEPRSVFPPGF------AS---MFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCccCCchh------hc---ccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHH
Confidence 98643 33211 11 25689999999999983 33334444444444443 2799999999999999988
Q ss_pred HH
Q 030122 173 LS 174 (182)
Q Consensus 173 l~ 174 (182)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=135.01 Aligned_cols=160 Identities=13% Similarity=-0.004 Sum_probs=101.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCC---c-c--ccCCCceeeEEEEe------------------C--------CE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEV---V-S--TIPTIGFNVETVQY------------------N--------NI 61 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~---~-~--~~~t~~~~~~~~~~------------------~--------~~ 61 (182)
...+++|+++|+.++|||||+.+|.+... . + +.-|+......+.+ . ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 34568999999999999999999965311 1 1 22333322111110 0 25
Q ss_pred EEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH----
Q 030122 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA---- 137 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~---- 137 (182)
.+.+||+||+++|..........+|++++|+|++++.........+..+ ... ...|+++|+||+|+.+.....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 7899999999888766655666789999999998643111111111112 111 234789999999997643221
Q ss_pred HHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 138 AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++...+.. .....++++.+||++|.|+++++++|.+.+.
T Consensus 163 ~i~~~l~~--~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 163 QIKEFVKG--TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHhcc--ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 12111110 0123467999999999999999999988654
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=130.21 Aligned_cols=150 Identities=17% Similarity=0.098 Sum_probs=109.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChh--------hhhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~ 83 (182)
.-+|++++|.||+|||||+|.|.+.+..- ...|-.+-...+...++++.+.||+|-..-.. -....+.
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 45799999999999999999999887543 44455577778888999999999999754322 1233466
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+||.+++|+|.+.+.+-.+.... . ....+.|+++|.||.|+........+ .. ....+++.+|+++|
T Consensus 296 ~ADlvL~v~D~~~~~~~~d~~~~-~-----~~~~~~~~i~v~NK~DL~~~~~~~~~-------~~-~~~~~~i~iSa~t~ 361 (454)
T COG0486 296 EADLVLFVLDASQPLDKEDLALI-E-----LLPKKKPIIVVLNKADLVSKIELESE-------KL-ANGDAIISISAKTG 361 (454)
T ss_pred hCCEEEEEEeCCCCCchhhHHHH-H-----hcccCCCEEEEEechhcccccccchh-------hc-cCCCceEEEEecCc
Confidence 89999999999986322222111 1 12367999999999999875432222 01 11225999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
+|++.+.+.|.+.+..
T Consensus 362 ~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 362 EGLDALREAIKQLFGK 377 (454)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999998877654
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=140.16 Aligned_cols=155 Identities=14% Similarity=0.060 Sum_probs=103.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC---Ccc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE---VVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~---~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
-|+++|+.++|||||+++|.+.. +.+ +..|+......+.. .+..+.+||+||+++|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999998633 222 34555444444444 456789999999999977777778999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCHHHHHHhhccc--ccCCCceEEEEecccCCCCHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDDAAVSEALELH--KIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+|+++.-. ......+. ++.. .++| +++|+||+|+.+....+.+...+... .......+++.+||++|.|+++
T Consensus 82 Vda~eg~~-~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVM-AQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99886321 11112222 2222 3455 57999999997532222222221111 0111245799999999999999
Q ss_pred HHHHHHHHHh
Q 030122 169 GMDWLSNTLK 178 (182)
Q Consensus 169 ~~~~l~~~i~ 178 (182)
+++.|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999986543
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-19 Score=122.27 Aligned_cols=125 Identities=24% Similarity=0.293 Sum_probs=82.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe---CCEEEEEEECCCCCCChhhhhh---hCCCCCEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRC---YFPNTEAVIY 90 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~---~~~~~~~~i~ 90 (182)
.-.|+++|+.|||||+|+.+|..+...+....+..+. ...+ ....+.++|+|||++.+..... +...+.++||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 3479999999999999999999997766444443222 2222 4568899999999999874443 4778999999
Q ss_pred EEeCCC-cchHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCCCCCHHHHHHh
Q 030122 91 VVDSSD-TDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDDAAVSEA 142 (182)
Q Consensus 91 v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~~~~~~~~~~~ 142 (182)
|+|.+. +..+.+..+++..++.... ...+|+++++||+|+..+.....+...
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~ 136 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKL 136 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHH
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHH
Confidence 999874 4557777777777765432 367899999999999987665444333
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=122.82 Aligned_cols=110 Identities=18% Similarity=0.087 Sum_probs=81.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---------------------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++++...... +..++......+.+.+..+++|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532110 122333444566678899999999999888777
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
+..++..+|++++|+|+++.........| ..+. ..++|.++++||+|....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~----~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD----EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH----HcCCCEEEEEECCccCCC
Confidence 88888999999999999876554332222 2222 257899999999998753
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=121.67 Aligned_cols=109 Identities=16% Similarity=0.058 Sum_probs=80.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC--c-------------------cccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV--V-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~--~-------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++|+.... . .+.-|+......+.+++..+.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974111 0 0222333445667778999999999999988888
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
+..+++.+|++++|+|..+...-+. ...+..+.. .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 8889999999999999876533222 223333322 5789999999999874
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.7e-18 Score=132.95 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=81.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhc--CCCc-------------------c----ccCCCceeeEEEEeCCEEEEEEECCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM--GEVV-------------------S----TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~--~~~~-------------------~----~~~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (182)
.-+|+++|++++|||||+++|+. +... + +..++......+.++++.+++|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 34899999999999999999973 1110 0 111222333456678899999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+|......+++.+|++|+|+|+++.... ....++... ...++|+++++||+|+...
T Consensus 90 ~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 90 EDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred hhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccccc
Confidence 99988777788999999999999875322 222333322 2268999999999998754
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=135.79 Aligned_cols=113 Identities=19% Similarity=0.078 Sum_probs=88.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCC-----------------c----cccCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEV-----------------V----STIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~-----------------~----~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
...+|+++|+.|+|||||+++|+.... . .+..|+......+.+.+..+++|||||+.+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 445899999999999999999985211 0 1444555666677888999999999999999
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
...+..+++.+|++++|+|.++.........| ..+.. .++|+++++||+|+...
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCCC
Confidence 88889999999999999999887666544333 33322 47899999999998864
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-18 Score=133.18 Aligned_cols=159 Identities=11% Similarity=0.047 Sum_probs=117.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
....+||+++|+.|+|||||+-.+....|.+ ..+-.....-..++ ..+...+.|++..+..+......++++|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 3457999999999999999999999999887 22222211111222 56678999998777766666777899999999
Q ss_pred EEeCCCcchHHHHHH-HHHHHHhcc-CCCCCeEEEEeeCCCCCCCCCH------HHHHHhhcccccCCCceEEEEecccC
Q 030122 91 VVDSSDTDRIQTAKE-EFHAILEEE-ELKGAVALIFANKQDLPGALDD------AAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 91 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
||+.+++++++.+.. |+..+.+.. ...++|+|+|+||+|....... ..++.++.... .+++|||++
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE------tciecSA~~ 159 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE------TCIECSALT 159 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH------HHHhhhhhh
Confidence 999999999998875 555554432 1257899999999999764332 22333332221 289999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030122 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~ 178 (182)
-.++.++|....+++.
T Consensus 160 ~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhHhhhhhhhheee
Confidence 9999999998887654
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=130.09 Aligned_cols=148 Identities=20% Similarity=0.185 Sum_probs=108.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChh------hhhhhC--CCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNT 85 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~~~ 85 (182)
..+|+++|.||+|||||+|++++....- ..-|.+-....+.+++..+.+.|.||-....+ ....|+ .++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 4679999999999999999999866444 44455455556666888899999999765433 233333 357
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC----CCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
|++|.|+|+++-++ .....-++++ .+.|++++.|++|.... .+.+.+.+.++. |++.+||+
T Consensus 83 D~ivnVvDAtnLeR---nLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA~ 147 (653)
T COG0370 83 DLIVNVVDATNLER---NLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVAK 147 (653)
T ss_pred CEEEEEcccchHHH---HHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEee
Confidence 99999999998554 2333334444 57899999999998653 234556666554 49999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030122 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~ 179 (182)
+|.|++++.+.+.+...+
T Consensus 148 ~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 148 RGEGLEELKRAIIELAES 165 (653)
T ss_pred cCCCHHHHHHHHHHhccc
Confidence 999999999998875543
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=120.86 Aligned_cols=160 Identities=17% Similarity=0.098 Sum_probs=102.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceee----EEEEeCCEEEEEEECCCCCC------C-------hh
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNV----ETVQYNNIKFQVWDLGGQTS------I-------RP 76 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~d~~g~~~------~-------~~ 76 (182)
..+-+.|++||+||+|||||.|++.+.+............ ..+..+...+.++||||--. + +.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 4567899999999999999999999999877322222112 22333788999999999421 1 11
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-----------------HHH
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-----------------AAV 139 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-----------------~~~ 139 (182)
.| .....||.++.++|+++....-. ...++.+..+ ..+|-++|+||.|....... -++
T Consensus 149 ~~-~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 149 PR-DAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred HH-HHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 22 23567999999999996432111 1112222222 68899999999998753211 112
Q ss_pred HHhhcccc----c-CCC----ceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 140 SEALELHK----I-KNR----QWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 140 ~~~~~~~~----~-~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.+.+.... . ... --.+|.+||++|+|++++-+||..++.
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 22221111 0 000 124899999999999999999987654
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=120.08 Aligned_cols=150 Identities=23% Similarity=0.201 Sum_probs=106.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCC----hh---hhhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI----RP---YWRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~----~~---~~~~~~~~~~~ 87 (182)
.|.++|.||+|||||++.+...+..- ...|+......+.+ +...+.+-|+||--.- +. .....++.|+.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~ 277 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKG 277 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhce
Confidence 47899999999999999999766433 34444455666666 3444999999995332 22 23345678999
Q ss_pred EEEEEeCCCc---chHHHHHHHHHHHHhc-cCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCCCceEEEEeccc
Q 030122 88 VIYVVDSSDT---DRIQTAKEEFHAILEE-EELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
++||+|++.+ .-++.+..++.++-.+ ..+.+.|.++|+||+|+++.... .++...+... .++.+||+
T Consensus 278 l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pvsA~ 350 (366)
T KOG1489|consen 278 LLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPVSAK 350 (366)
T ss_pred EEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEeeec
Confidence 9999999988 6666666655555333 24578899999999999743321 3444443322 59999999
Q ss_pred CCCCHHHHHHHHHH
Q 030122 162 KGEGLFEGMDWLSN 175 (182)
Q Consensus 162 ~~~~i~~~~~~l~~ 175 (182)
+++|+.++++.+-+
T Consensus 351 ~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 351 SGEGLEELLNGLRE 364 (366)
T ss_pred cccchHHHHHHHhh
Confidence 99999999887754
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-18 Score=130.11 Aligned_cols=159 Identities=17% Similarity=0.090 Sum_probs=102.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCC----------c---------cccCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEV----------V---------STIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
...+++|+++|+.++|||||+++|++... . .+.-|+......+..++..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 45578999999999999999999986310 0 0222222222223336678899999999988
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCHH-----HHHHhhccccc
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDDA-----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~~-----~~~~~~~~~~~ 148 (182)
..........+|++++|+|++....- .....+..+.. .++| +++++||+|+.+..... ++.+.+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 76666667889999999998764221 12222222322 3677 67899999987432221 22222222222
Q ss_pred CCCceEEEEecccCCC--------CHHHHHHHHHHHH
Q 030122 149 KNRQWAIFKTCAIKGE--------GLFEGMDWLSNTL 177 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~~i 177 (182)
....++++.+||++|. ++.++++.+.+.+
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 2335789999999983 5777777776654
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-17 Score=118.11 Aligned_cols=153 Identities=17% Similarity=0.099 Sum_probs=110.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCC------Ch--hhhhhhC-CCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS------IR--PYWRCYF-PNT 85 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~------~~--~~~~~~~-~~~ 85 (182)
..|++.|.||+|||||++.+.+.+..- ...|.+++...+..+..+++++||||--+ .. ......+ +=.
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~ 248 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLA 248 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhc
Confidence 489999999999999999999876433 55666699999999999999999999532 11 0111111 235
Q ss_pred CEEEEEEeCCCc--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 86 EAVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 86 ~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++++|++|++.. -+++....++.++... .+.|+++|.||+|..+....+++........ ......+++..+
T Consensus 249 ~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~ 321 (346)
T COG1084 249 GVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEG----GEEPLKISATKG 321 (346)
T ss_pred CeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhc----cccccceeeeeh
Confidence 889999999765 4677878888888665 5599999999999987655555544432222 222667788888
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
.+++.+-..+....
T Consensus 322 ~~~d~~~~~v~~~a 335 (346)
T COG1084 322 CGLDKLREEVRKTA 335 (346)
T ss_pred hhHHHHHHHHHHHh
Confidence 88887776666553
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=109.46 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=105.8
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCC-ccccCCCc--eeeEEEEeCCEEEEEEECCCC----------CCChh
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEV-VSTIPTIG--FNVETVQYNNIKFQVWDLGGQ----------TSIRP 76 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~-~~~~~t~~--~~~~~~~~~~~~~~i~d~~g~----------~~~~~ 76 (182)
..-|+.....|+|+|.+|+|||||+|.|++++. ...+.|-| .....+.+.. .+.++|.||- +....
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHH
Confidence 345666777999999999999999999999773 33444444 3333344422 3889999993 22233
Q ss_pred hhhhhCCC---CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhcccccC
Q 030122 77 YWRCYFPN---TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHKIK 149 (182)
Q Consensus 77 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~~~ 149 (182)
+...|++. -.++++++|+..+-.-.+. .+.+.+.. .++|+++++||+|....... ..+.+.+.....
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~- 169 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP- 169 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC-
Confidence 44455553 4678889998765442221 22222222 68999999999999864333 233333332222
Q ss_pred CCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 150 NRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
....++.+|+.++.|++++...|.+.+...
T Consensus 170 -~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 170 -DDQWVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred -ccceEEEEecccccCHHHHHHHHHHHhhcc
Confidence 222288889999999999999998877653
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-17 Score=125.25 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=100.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcC-------CC---c-----c----ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMG-------EV---V-----S----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~-------~~---~-----~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
....+++|+++|.+++|||||+++|++. .+ . + +.-|+......+..++..+.++||||+++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3456789999999999999999999862 10 0 0 12222222222333667899999999988
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEE-EEeeCCCCCCCCCH-H----HHHHhhcccc
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDLPGALDD-A----AVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~D~~~~~~~-~----~~~~~~~~~~ 147 (182)
|.......+..+|++++|+|+.+... ......+..+.. .++|.+ +++||+|+.+.... + ++...+....
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 76666666788999999999886422 122223332222 467865 57999999743222 1 2222222111
Q ss_pred cCCCceEEEEecccCCC----------CHHHHHHHHHHHH
Q 030122 148 IKNRQWAIFKTCAIKGE----------GLFEGMDWLSNTL 177 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~i 177 (182)
.....++++.+|+.+|. ++.++++.+...+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 11235789999999984 6677777776543
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=123.29 Aligned_cols=136 Identities=26% Similarity=0.417 Sum_probs=110.7
Q ss_pred ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhcc
Q 030122 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~ 114 (182)
+.+|.|+....+.+++..+.+.|++||...+..|.++|.+++++|||+++++ ..++.+....|..+....
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 6788999999999999999999999999999999999999999999999875 356788888999999999
Q ss_pred CCCCCeEEEEeeCCCCCCCC-----------------CHHHH----HHhhcc-cccCCCceEEEEecccCCCCHHHHHHH
Q 030122 115 ELKGAVALIFANKQDLPGAL-----------------DDAAV----SEALEL-HKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 115 ~~~~~p~i~v~nK~D~~~~~-----------------~~~~~----~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
+..+.++|+++||.|+..+. ..++. ...+.. ...+.+.+.++.|+|.+..+++.+|+.
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 99999999999999997531 11111 111111 111236788999999999999999999
Q ss_pred HHHHHhcC
Q 030122 173 LSNTLKSG 180 (182)
Q Consensus 173 l~~~i~~~ 180 (182)
+.+.+...
T Consensus 339 v~d~Ii~~ 346 (354)
T KOG0082|consen 339 VTDTIIQN 346 (354)
T ss_pred HHHHHHHH
Confidence 98887643
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-17 Score=124.49 Aligned_cols=147 Identities=18% Similarity=0.072 Sum_probs=92.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCC------------C----c-c--ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGE------------V----V-S--TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~------------~----~-~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
+...+++|+++|..++|||||+++|++.. . . + +.-|+......+..++..+.+|||||+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 34567899999999999999999997420 0 0 0 22233332233333677899999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEE-EEeeCCCCCCCCCHH-----HHHHhhcccc
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDLPGALDDA-----AVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~D~~~~~~~~-----~~~~~~~~~~ 147 (182)
|..........+|++++|+|+.....-+ ....+..+.. .++|.+ +++||+|+.+..... ++...+....
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 8766666667899999999998642211 2222222322 356755 689999987532211 2222222111
Q ss_pred cCCCceEEEEecccCCC
Q 030122 148 IKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~ 164 (182)
.....++++.+||.+|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 12234789999999875
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=117.11 Aligned_cols=108 Identities=15% Similarity=0.019 Sum_probs=77.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----------------------ccCCCceeeEEEEe-----CCEEEEEEECCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----------------------TIPTIGFNVETVQY-----NNIKFQVWDLGGQ 71 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----------------------~~~t~~~~~~~~~~-----~~~~~~i~d~~g~ 71 (182)
+|+++|+.|+|||||+++|+...... ..-++......+.+ ..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 58999999999999999998643221 00111111122222 2478999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
.++......++..+|++++|+|.++..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888899999999999987765533 333333322 358999999999985
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=115.17 Aligned_cols=157 Identities=11% Similarity=0.039 Sum_probs=93.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce---ee--EEEEe-CCEEEEEEECCCCCCChhhh-----hhhCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF---NV--ETVQY-NNIKFQVWDLGGQTSIRPYW-----RCYFPN 84 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~---~~--~~~~~-~~~~~~i~d~~g~~~~~~~~-----~~~~~~ 84 (182)
++||+++|.+|+|||||+|.+++..... ...+.+. .. ..+.. ....+.+||+||........ ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 3799999999999999999999865432 2222221 11 11111 23478999999975432222 223567
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---------HHHHHHhhccc---ccC---
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELH---KIK--- 149 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---------~~~~~~~~~~~---~~~--- 149 (182)
+|.++++.+ .++.....++...+.. .+.|+++|+||+|+..... .+++.+.+... ...
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 898888753 2333333333333333 3679999999999853211 12221111110 000
Q ss_pred CCceEEEEeccc--CCCCHHHHHHHHHHHHhcC
Q 030122 150 NRQWAIFKTCAI--KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 150 ~~~~~~~~~Sa~--~~~~i~~~~~~l~~~i~~~ 180 (182)
...-++|-+|+. .+.++.++.+.+.+.+.+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 123368999998 5789999999988877643
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-17 Score=125.28 Aligned_cols=149 Identities=14% Similarity=0.076 Sum_probs=99.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCC-------------------------------c-c--ccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEV-------------------------------V-S--TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~-------------------------------~-~--~~~t~~~~~~~~~~~~ 60 (182)
..+++|+++|+.++|||||+.+|+.... . + +.-|+......+.+++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4568999999999999999999874110 0 0 2223333334455578
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHH-------HHHHHHHHHHhccCCCCC-eEEEEeeCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ-------TAKEEFHAILEEEELKGA-VALIFANKQDLPG 132 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-p~i~v~nK~D~~~ 132 (182)
..+.++|+||+++|.......+..+|++|+|+|+++ ..|+ .....+... . ..++ ++++++||+|+.+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~-~---~~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLA-F---TLGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHH-H---HcCCCcEEEEEEcccCCc
Confidence 899999999999999888888999999999999986 2232 222222222 1 1456 5788999999762
Q ss_pred CC-C-------HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 133 AL-D-------DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 133 ~~-~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
.. . .+++...+....+....++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 1 122333333223333457899999999999853
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=116.54 Aligned_cols=154 Identities=19% Similarity=0.096 Sum_probs=111.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCChh--hh------hhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRP--YW------RCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~--~~------~~~~~ 83 (182)
....|+++|-.|+|||||+|+|.+..... .+.|.......+.+ .+..+.+.||-|--+.-+ +. .....
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 44689999999999999999999766432 77888887888888 468899999999543322 11 11234
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|.+++|+|++++.-.+.+... ..++......++|+++|.||+|+...... ........ . ..+.+||++|
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~~v-~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~----~-~~v~iSA~~~ 341 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLEAV-EDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGS----P-NPVFISAKTG 341 (411)
T ss_pred cCCEEEEEeecCChhHHHHHHHH-HHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcC----C-CeEEEEeccC
Confidence 79999999999999655555444 33444444467999999999998754321 11111110 1 4899999999
Q ss_pred CCHHHHHHHHHHHHh
Q 030122 164 EGLFEGMDWLSNTLK 178 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~ 178 (182)
+|++.+.+.|.+.+.
T Consensus 342 ~gl~~L~~~i~~~l~ 356 (411)
T COG2262 342 EGLDLLRERIIELLS 356 (411)
T ss_pred cCHHHHHHHHHHHhh
Confidence 999999999988776
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-16 Score=100.43 Aligned_cols=103 Identities=19% Similarity=0.168 Sum_probs=72.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChh---------hhhhhCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFPNT 85 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~~~~~~ 85 (182)
||+++|.+|+|||||+|.|++..... ...|.......+.+.+..+.++||||-..-.. .....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 69999999999999999999864333 33444455566677888999999999644211 123334789
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK 127 (182)
|++++|+|..++.. +.....+..+ + .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999999776322 2222332333 1 68999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-17 Score=128.82 Aligned_cols=148 Identities=19% Similarity=0.086 Sum_probs=97.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCC----------------c-c--ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEV----------------V-S--TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~----------------~-~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
....+++|+++|++++|||||+++|++... . + +.-|+......+.+++..+.++|+||+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 345678999999999999999999995211 0 1 22222222333445778999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-H----HHHHhhcccc
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-~----~~~~~~~~~~ 147 (182)
|.......+..+|++++|+|+.+...- ....++..+.. .++| +++++||+|+.+.... + ++...+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 877667777899999999998865322 22333333322 4677 7889999999753221 1 2222222222
Q ss_pred cCCCceEEEEecccCCCC
Q 030122 148 IKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~ 165 (182)
+....++++.+|+.+|.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 233568899999988753
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.1e-17 Score=125.18 Aligned_cols=147 Identities=18% Similarity=0.102 Sum_probs=94.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCc---------------c--ccCCCcee--eEEEEeCCEEEEEEECCCCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVV---------------S--TIPTIGFN--VETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~---------------~--~~~t~~~~--~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
...+++|+++|.+++|||||+++|++.... + ..+.+.++ ...+..++..+.+.||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 455689999999999999999999964110 0 11222222 2233336778899999999887
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-H----HHHHhhccccc
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (182)
.......+..+|++++|+|+..... ......+..+.. .++| +++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 6666666788999999999876432 222222232322 4678 7789999999753221 1 22222222222
Q ss_pred CCCceEEEEecccCCCC
Q 030122 149 KNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~ 165 (182)
....++++.+|+.+|.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 22357899999998864
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=123.24 Aligned_cols=150 Identities=17% Similarity=0.088 Sum_probs=100.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCC--c-------------------------c-------ccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEV--V-------------------------S-------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~--~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (182)
..+++|+++|+.++|||||+.+|+.... . + +.-|+......+.+.+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4568999999999999999999875110 0 0 2223333344455578
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcch---H---HHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---I---QTAKEEFHAILEEEELKGAV-ALIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~ 133 (182)
..+.++|+||+.+|.......+..+|++++|+|++...- | ......+..+.. .++| +++++||+|....
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccccc
Confidence 899999999999998877777889999999999886420 1 122222222221 4665 6799999995421
Q ss_pred ----CCH----HHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 134 ----LDD----AAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 134 ----~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
... +++...+....+....++++.+|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 112 23333333333333468899999999999864
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-16 Score=123.07 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=78.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhc--CCCcc-----------------------ccCCCceeeEEEEeCCEEEEEEECCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM--GEVVS-----------------------TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~--~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (182)
.-+|+++|++++|||||+++|+. +.... +.-++......+.+++..+.+|||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 44899999999999999999863 11110 111111233456668899999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
..|......+++.+|++|+|+|+++... .....++... .. .++|+++++||+|+..
T Consensus 91 ~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 91 EDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-RL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred hhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-Hh---cCCCEEEEEECccccC
Confidence 9888766677889999999999886421 1223333322 22 5789999999999864
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.1e-16 Score=126.30 Aligned_cols=111 Identities=16% Similarity=0.062 Sum_probs=83.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCc--c-------------------ccCCCceeeEEEEeCCEEEEEEECCCCCCChh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVV--S-------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 76 (182)
-+|+++|.+++|||||+++|+..... . +.-|+......+.+.+..+.+|||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 37999999999999999999742110 0 22233344556777899999999999999888
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+..+++.+|++++|+|+.+....+... .+..+.. .++|+++++||+|+...
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR----YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH----cCCCEEEEEECCCCCCC
Confidence 8888899999999999998765544332 2233322 46899999999998754
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=122.96 Aligned_cols=147 Identities=15% Similarity=0.043 Sum_probs=94.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCc--c----------------------------------ccCCCceeeEEEEeCCE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVV--S----------------------------------TIPTIGFNVETVQYNNI 61 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~--~----------------------------------~~~t~~~~~~~~~~~~~ 61 (182)
+||+++|+.++|||||+.+|+...-. . +.-|+......+.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999742210 0 12223344445555788
Q ss_pred EEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHH
Q 030122 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAV 139 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~ 139 (182)
.+.++||||+++|.......+..+|++++|+|+.....-+... .+..+ ... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~~~~-~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-HSYIA-SLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-HHHHH-HHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 9999999999988765566778999999999987543211111 11111 111 2346899999999975321 1222
Q ss_pred HHhhcc--cccCCCceEEEEecccCCCCHHH
Q 030122 140 SEALEL--HKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
.+.+.. .......++++.+||++|+|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 11111246799999999999885
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-16 Score=120.01 Aligned_cols=159 Identities=17% Similarity=0.088 Sum_probs=101.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCc---------------c----ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVV---------------S----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~---------------~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
....+++|+++|..++|||||+++|++.... + +.-|+......+..++..+.+.||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3456789999999999999999999863110 0 22222222222333677899999999988
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEE-EEeeCCCCCCCCCH-H----HHHHhhcccc
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDLPGALDD-A----AVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~D~~~~~~~-~----~~~~~~~~~~ 147 (182)
|.......+..+|++++|+|+..... ......+..+.. .++|.+ +++||+|+.+.... + ++...+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 76666666789999999999876432 222223332322 467876 58999999742221 1 2222222222
Q ss_pred cCCCceEEEEecccCCC----------CHHHHHHHHHHH
Q 030122 148 IKNRQWAIFKTCAIKGE----------GLFEGMDWLSNT 176 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~ 176 (182)
+....++++.+||++|. ++..+++.|...
T Consensus 163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 22345789999999875 456666666553
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=125.25 Aligned_cols=152 Identities=14% Similarity=0.039 Sum_probs=96.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc------------------------------------ccCCCceeeEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS------------------------------------TIPTIGFNVETVQ 57 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~------------------------------------~~~t~~~~~~~~~ 57 (182)
....++|+++|++++|||||+++|+...-.- +.-|+......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4567899999999999999999998532110 1112223333445
Q ss_pred eCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--
Q 030122 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-- 135 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-- 135 (182)
+++..+.++||||++.|.......+..+|++++|+|+...-.-+....+ . +.... ...|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~-l~~~l--g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-F-IATLL--GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-H-HHHHh--CCCceEEEEEeeccccchhHH
Confidence 5778999999999998865555557899999999998764211111111 1 11111 2247899999999974321
Q ss_pred HHHHHHhhcc--cccC-CCceEEEEecccCCCCHHHH
Q 030122 136 DAAVSEALEL--HKIK-NRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 136 ~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~i~~~ 169 (182)
..++...+.. .... ....+++.+||++|+|+.+.
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2223222211 0111 23567999999999999764
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=113.33 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=78.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc--c-----------------ccCCCceeeEEEEeC----------CEEEEEEECC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV--S-----------------TIPTIGFNVETVQYN----------NIKFQVWDLG 69 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~--~-----------------~~~t~~~~~~~~~~~----------~~~~~i~d~~ 69 (182)
+|+++|+.++|||||+.+|+..... . +.-|+......+.+. .+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999853211 0 122222222223332 7889999999
Q ss_pred CCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
|+..|......+++.+|++++|+|+++....+... .+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECCCcc
Confidence 99999998899999999999999998876554422 2222222 468999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-16 Score=119.62 Aligned_cols=152 Identities=17% Similarity=0.109 Sum_probs=111.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
+..-|.++|+..-|||||+..+-...... -.-|-.+..+.+.. ....+.|+|||||+-|..|.....+-+|.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 34579999999999999999999877655 12222244444444 3468999999999999999999899999999
Q ss_pred EEEeCCCc---chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc----CCCceEEEEecccC
Q 030122 90 YVVDSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI----KNRQWAIFKTCAIK 162 (182)
Q Consensus 90 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 162 (182)
+|+++++. .+.+.+. +....+.|+++++||+|.++.. ++.+..++....+ -.+...++.+||++
T Consensus 84 LVVa~dDGv~pQTiEAI~--------hak~a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 84 LVVAADDGVMPQTIEAIN--------HAKAAGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred EEEEccCCcchhHHHHHH--------HHHHCCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 99999874 3433322 1223799999999999999653 3333333322222 23568899999999
Q ss_pred CCCHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNT 176 (182)
Q Consensus 163 ~~~i~~~~~~l~~~ 176 (182)
|+|+.+++..+.-.
T Consensus 155 g~Gi~eLL~~ill~ 168 (509)
T COG0532 155 GEGIDELLELILLL 168 (509)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999887643
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=118.10 Aligned_cols=159 Identities=18% Similarity=0.112 Sum_probs=99.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC------C------C-----cc--ccCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG------E------V-----VS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~------~------~-----~~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
...+++|+++|..++|||||+++|.+. . . .+ +.-|+......+..++..+.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456789999999999999999999732 1 0 01 222333333334446778999999999988
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-HHHH----Hhhccccc
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-AAVS----EALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-~~~~----~~~~~~~~ 148 (182)
..........+|++++|+|+.+...- .....+..+.. .++| +++++||+|+.+.... +.+. +.+.....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 76655566789999999998764321 12222222222 4678 5788999999753221 1121 22211112
Q ss_pred CCCceEEEEeccc---CCCC-------HHHHHHHHHHHH
Q 030122 149 KNRQWAIFKTCAI---KGEG-------LFEGMDWLSNTL 177 (182)
Q Consensus 149 ~~~~~~~~~~Sa~---~~~~-------i~~~~~~l~~~i 177 (182)
....++++.+|+. +|.| +.++++.+...+
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2335788888876 4554 667777776554
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=109.66 Aligned_cols=155 Identities=19% Similarity=0.140 Sum_probs=108.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCCh-------hhhhhhCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PYWRCYFP 83 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~ 83 (182)
.....+++++|.|++|||||+++|.+.+-.. .+.|.......+.|++..+++.|+||--.-. .......+
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 3445689999999999999999999866433 5566668888899999999999999743221 23455678
Q ss_pred CCCEEEEEEeCCCcch-HHHHHHHHHH----------------------------------------HHhccCC------
Q 030122 84 NTEAVIYVVDSSDTDR-IQTAKEEFHA----------------------------------------ILEEEEL------ 116 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~~~~------ 116 (182)
+||++++|+|+..... .+-+...+.. ++.....
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999875333 2222221111 1111000
Q ss_pred ------------------CCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 117 ------------------KGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 117 ------------------~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.=+|.+.|.||.|+......+.+.+.. .++.+||..+.|++++.+.+.+.+.
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 126999999999998743333332222 4999999999999999999988764
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=112.14 Aligned_cols=158 Identities=19% Similarity=0.114 Sum_probs=105.7
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCCh-------hhhhhhCCCCCEE
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIR-------PYWRCYFPNTEAV 88 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~-------~~~~~~~~~~~~~ 88 (182)
|.++|.|++|||||++.+...+..- ...|+-.+...+.+ ..-.|.+-|+||--.-. ......++++.++
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL 241 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVL 241 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhee
Confidence 6799999999999999999766433 33444455555555 55679999999853211 1233446689999
Q ss_pred EEEEeCCCcch---HHHHHHHHHHHHhc-cCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCC
Q 030122 89 IYVVDSSDTDR---IQTAKEEFHAILEE-EELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 89 i~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++|+|++..+. .++......++..+ ..+.+.|.++|+||+|+..+.+ .+.+.+.+... ......++ +|+.++
T Consensus 242 ~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~--~~~~~~~~-ISa~t~ 318 (369)
T COG0536 242 LHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA--LGWEVFYL-ISALTR 318 (369)
T ss_pred EEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh--cCCCccee-eehhcc
Confidence 99999986543 55555555555444 3457899999999999665432 33333333221 11111233 999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++...+.+.+.+.
T Consensus 319 ~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 319 EGLDELLRALAELLEET 335 (369)
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999988877653
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=117.25 Aligned_cols=150 Identities=19% Similarity=0.141 Sum_probs=114.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC------------------ccccCCCceeeEEEEeCC---EEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV------------------VSTIPTIGFNVETVQYNN---IKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~------------------~~~~~t~~~~~~~~~~~~---~~~~i~d~~g~~~~~~~ 77 (182)
++.+|-+-.=|||||..+|+.... .++.-|+......+.|.. +.++++|||||.+|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 599999999999999999986321 013334445555666655 99999999999999988
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH---HHHHhhcccccCCCceE
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA---AVSEALELHKIKNRQWA 154 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~ 154 (182)
-...+..|+++++|+|++..---+....++..+ + .+..+|.|+||+|++.+.... ++.+.+... ...
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~-----~~~ 211 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADPERVENQLFELFDIP-----PAE 211 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC-----ccc
Confidence 888888999999999999876666666655554 2 678999999999999864432 233333333 336
Q ss_pred EEEecccCCCCHHHHHHHHHHHHh
Q 030122 155 IFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++.+||++|.|+.++++.+++.+.
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhCC
Confidence 999999999999999999998764
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-15 Score=112.15 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=53.7
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc-------ccCCCceeeEEE-------------------E-eCCEEEEEEECCCC-
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS-------TIPTIGFNVETV-------------------Q-YNNIKFQVWDLGGQ- 71 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~-------~~~t~~~~~~~~-------------------~-~~~~~~~i~d~~g~- 71 (182)
|+++|.|++|||||++++++..... ..|+.|...... . ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999876432 234444222110 0 13478999999997
Q ss_pred ---CCChhhhhh---hCCCCCEEEEEEeCC
Q 030122 72 ---TSIRPYWRC---YFPNTEAVIYVVDSS 95 (182)
Q Consensus 72 ---~~~~~~~~~---~~~~~~~~i~v~d~~ 95 (182)
++++.+... .+++||++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444444333 488999999999986
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-16 Score=126.18 Aligned_cols=152 Identities=14% Similarity=0.018 Sum_probs=95.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc------------------------------------ccCCCceeeEEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS------------------------------------TIPTIGFNVETV 56 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~------------------------------------~~~t~~~~~~~~ 56 (182)
.....++|+++|++++|||||+++|+.....- +.-|+......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 45567899999999999999999999633110 111222233344
Q ss_pred EeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-
Q 030122 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD- 135 (182)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~- 135 (182)
.+.+..+.++||||++.|.......+..+|++++|+|+.....-+ ....+..+... ...++++++||+|+.+...
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL---GIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh---CCCeEEEEEEecccccchhH
Confidence 557788999999999887665555678999999999987542211 11111111111 2368899999999874211
Q ss_pred -HHHHHHhhcc--cccCCCceEEEEecccCCCCHHH
Q 030122 136 -DAAVSEALEL--HKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 136 -~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
.+++...+.. ........+++.+||++|.|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1222222210 01111345699999999999874
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=114.51 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=102.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCC-------------------------------Ccc---ccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGE-------------------------------VVS---TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~-------------------------------~~~---~~~t~~~~~~~~~~~~ 60 (182)
..+++++|+|+..+|||||+.+|+.+. ..+ +.-|+......+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 457899999999999999999998621 111 3334434444555588
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcch---HH---HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---IQ---TAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
+.+.|.|+||+..|-..+....++||++|+|+|+.+.+- |. ..... .++.. .+.-.-+|+++||+|..+-.
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH--~~La~-tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH--AFLAR-TLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH--HHHHH-hcCCceEEEEEEcccccccC
Confidence 899999999999998888888999999999999987631 11 11111 11111 12345778889999998621
Q ss_pred C--HHHH----HHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 135 D--DAAV----SEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 135 ~--~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+ .+++ ...+....+....++++.+|+..|+|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 1 1222 23222333344578899999999999865
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.8e-15 Score=103.26 Aligned_cols=160 Identities=12% Similarity=0.014 Sum_probs=100.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEEeCCEEEEEEECCCCCCChh--------h---hhhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP--------Y---WRCY 81 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~---~~~~ 81 (182)
++|+++|.+|+||||++|.+++..... ...|.........+.+..+.++||||-..... + ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999876543 23455556666667888999999999644311 1 1122
Q ss_pred CCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhc---ccccCCCceEEEE
Q 030122 82 FPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE---LHKIKNRQWAIFK 157 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (182)
..+.|++++|+++.+.. ....+.+++..++... .-.++++++|++|.......++...... ....+..+-.++.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 45789999999987622 2334444444443321 2258899999999876443333211110 0011111212333
Q ss_pred ec-----ccCCCCHHHHHHHHHHHHhc
Q 030122 158 TC-----AIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~S-----a~~~~~i~~~~~~l~~~i~~ 179 (182)
.+ +..+.++.++++.+.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 33 45678999999999888775
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.4e-15 Score=120.65 Aligned_cols=113 Identities=16% Similarity=0.073 Sum_probs=83.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCC--------c-------------cccCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEV--------V-------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~--------~-------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
.-.+|+++|.+++|||||+++|+.... . .+.-|+......+.+++..+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 345799999999999999999974210 0 1333444555667778999999999999888
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
...+...++.+|++++|+|+.+...-+.. ..+..+.. .++|.++++||+|+...
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 77888888999999999998875433322 22233322 56899999999999854
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-15 Score=120.66 Aligned_cols=106 Identities=18% Similarity=0.099 Sum_probs=80.1
Q ss_pred EecCCCChHHHHHHhhcCCCc---------------------cccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhh
Q 030122 23 FFIDNFGNLCDTDRLQMGEVV---------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 23 iG~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 81 (182)
+|++++|||||+++|...... ++..|++.....+.+.+..+.+|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999542110 03345555566777789999999999999887778888
Q ss_pred CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
+..+|++++|+|++..........| ..+.. .++|+++|+||+|....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEECCCCCCC
Confidence 8999999999999886655443322 33322 47899999999998754
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.5e-15 Score=113.48 Aligned_cols=157 Identities=18% Similarity=0.078 Sum_probs=113.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
.+..-|-++|+..=|||||+..|-+..... -.-|-.+....+.. .+..++|.|||||.-|..|......-+|.+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 355679999999999999999999877654 11122222333333 77899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc----CCCceEEEEecccCCCCH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI----KNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i 166 (182)
|+...|.--=+.. +..++....+.|+++.+||||.+++. .+.+.+++..... -...+.++++||++|+|+
T Consensus 231 VVAadDGVmpQT~-----EaIkhAk~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 231 VVAADDGVMPQTL-----EAIKHAKSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEccCCccHhHH-----HHHHHHHhcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 9988764221111 12233344799999999999988764 4444444433222 236788999999999999
Q ss_pred HHHHHHHHHHH
Q 030122 167 FEGMDWLSNTL 177 (182)
Q Consensus 167 ~~~~~~l~~~i 177 (182)
+.+-+.++-..
T Consensus 305 ~~L~eaill~A 315 (683)
T KOG1145|consen 305 DLLEEAILLLA 315 (683)
T ss_pred HHHHHHHHHHH
Confidence 99888876543
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-15 Score=112.87 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=116.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC--------------c----cccCCCceeeEEEEe-----CCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV--------------V----STIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~--------------~----~~~~t~~~~~~~~~~-----~~~~~~i~d~~g~~~~~ 75 (182)
+..+|-+-.=|||||..|++.... . ++.-|+..+...+.| +.+.++++|||||-+|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 478888899999999999986211 0 133444444455555 45899999999999998
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccccCCCc
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQ 152 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 152 (182)
..-...+..|.++++|+|++..-.-+.+.+.+..+ ..+.-++-|+||+|++.+... .++.+.+++....
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-----e~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~d--- 162 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASD--- 162 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-----HcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcch---
Confidence 77777788899999999999877777777766655 257899999999999986442 4566666666443
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 153 WAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.+.+|||+|.||+++++.+++.+-
T Consensus 163 --av~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 163 --AVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred --heeEecccCCCHHHHHHHHHhhCC
Confidence 899999999999999999998764
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-16 Score=118.75 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=117.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCC----hhh----h-hhhCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSI----RPY----W-RCYFPNTE 86 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~----~-~~~~~~~~ 86 (182)
.+++.|-|++|||||++.+...+... ..+|.++....+.++...++++||||-.+. +.. . -...+--.
T Consensus 170 TlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLra 249 (620)
T KOG1490|consen 170 TLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRS 249 (620)
T ss_pred eEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhh
Confidence 79999999999999999998766433 445555878888888889999999995432 111 1 11112236
Q ss_pred EEEEEEeCCCc--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+++|+.|++.. .|.....++|+.+.-. ..+.|+|+|+||+|.....+..+..+.+.........++++++|+.+.+
T Consensus 250 aVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~ee 327 (620)
T KOG1490|consen 250 AVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEE 327 (620)
T ss_pred hheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchh
Confidence 89999999865 5677778888887554 3799999999999998766554444333333334455889999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|+.++-...++.++.
T Consensus 328 gVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 328 GVMDVRTTACEALLA 342 (620)
T ss_pred ceeeHHHHHHHHHHH
Confidence 999998888877764
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-15 Score=115.33 Aligned_cols=159 Identities=13% Similarity=0.042 Sum_probs=102.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCc---c---ccCCCceeeEEE---------------Ee---------------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVV---S---TIPTIGFNVETV---------------QY--------------- 58 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~---~---~~~t~~~~~~~~---------------~~--------------- 58 (182)
..+++|+++|+...|||||+..|.+.... + +.-|+...+... .+
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45689999999999999999999974321 1 333332111111 00
Q ss_pred ---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC
Q 030122 59 ---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 59 ---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~ 135 (182)
....+.++|+||++.|-.........+|++++|+|+.+..........+..+ ... .-.++++++||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCHHH
Confidence 0246899999999998776666678999999999998642111112222221 211 2347899999999975322
Q ss_pred HHH----HHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 136 DAA----VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 136 ~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.++ +...+.. ......+++.+||++|+|++.+++.|.+.+.
T Consensus 189 ~~~~~~ei~~~l~~--~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 189 AQDQYEEIRNFVKG--TIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHh--hccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 222 2221111 1124568999999999999999999886543
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-14 Score=116.23 Aligned_cols=112 Identities=15% Similarity=0.051 Sum_probs=80.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCC--------c-------------cccCCCceeeEEEEeCCEEEEEEECCCCCCCh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEV--------V-------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~--------~-------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (182)
--+|+++|.+++|||||+++|+.... . .+.-|+......+.+.+..+.++||||+.+|.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 34799999999999999999973111 0 12233334445567788999999999998876
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
......++.+|++++|+|....-.-+... .+..+.. .++|.++++||+|+.+.
T Consensus 90 ~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~----~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 90 IEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK----YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH----cCCCEEEEEECCCCCCC
Confidence 66666778899999999987654333322 2233322 46899999999998753
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=112.41 Aligned_cols=133 Identities=26% Similarity=0.391 Sum_probs=101.0
Q ss_pred ccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhc
Q 030122 45 TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEE 113 (182)
Q Consensus 45 ~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~ 113 (182)
+.+|.|+....+.+ ....+.++|++|+...+..|..++.+++++|||+++++ ..++.+....|..+...
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 45577788888998 99999999999999999999999999999999999753 36689999999999999
Q ss_pred cCCCCCeEEEEeeCCCCCCC--------------------CCHHHHH----HhhcccccCC---CceEEEEecccCCCCH
Q 030122 114 EELKGAVALIFANKQDLPGA--------------------LDDAAVS----EALELHKIKN---RQWAIFKTCAIKGEGL 166 (182)
Q Consensus 114 ~~~~~~p~i~v~nK~D~~~~--------------------~~~~~~~----~~~~~~~~~~---~~~~~~~~Sa~~~~~i 166 (182)
....+.|++|++||.|+... ...+... ..+....... +.+.++.|+|.+...+
T Consensus 299 ~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~ 378 (389)
T PF00503_consen 299 PWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENI 378 (389)
T ss_dssp GGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHH
T ss_pred cccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHH
Confidence 88899999999999997421 1112221 1111111112 7788999999999999
Q ss_pred HHHHHHHHHHH
Q 030122 167 FEGMDWLSNTL 177 (182)
Q Consensus 167 ~~~~~~l~~~i 177 (182)
..+|+.+.+.|
T Consensus 379 ~~v~~~v~~~i 389 (389)
T PF00503_consen 379 RKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhcCcC
Confidence 99999887654
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=103.17 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=102.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCc-----------eeeE-EEEe-----------------
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIG-----------FNVE-TVQY----------------- 58 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~-----------~~~~-~~~~----------------- 58 (182)
....+++.|+++|..|||||||++||...-... +.-... +++. ++.|
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 445567789999999999999999998522111 100000 0000 0000
Q ss_pred --------------------CCEEEEEEECCCCCC-Chh------hhhhhC-CCCCEEEEEEeC---CCcchHHHHHHHH
Q 030122 59 --------------------NNIKFQVWDLGGQTS-IRP------YWRCYF-PNTEAVIYVVDS---SDTDRIQTAKEEF 107 (182)
Q Consensus 59 --------------------~~~~~~i~d~~g~~~-~~~------~~~~~~-~~~~~~i~v~d~---~~~~s~~~~~~~~ 107 (182)
......++|||||-. |.. ....+. ...-+++||+|. +++.+|-.-.-+-
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 224688999999843 221 122221 234678899986 3455665554444
Q ss_pred HHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-----c-----------------c-CCCceEEEEecccCCC
Q 030122 108 HAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-----K-----------------I-KNRQWAIFKTCAIKGE 164 (182)
Q Consensus 108 ~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-----~-----------------~-~~~~~~~~~~Sa~~~~ 164 (182)
-.++.. .+.|+|++.||+|+.++.-..+++..+... . . .-+.+..+-+|+.+|.
T Consensus 174 cSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 174 CSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 555544 689999999999999865444443322100 0 0 1245678999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|.+++|..+-..+.+
T Consensus 251 G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 251 GFDDFFTAVDESVDE 265 (366)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999988877654
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=106.29 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=70.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-----------ccCCCceeeEEEEe--CC--EEEEEEECCCCCCCh-----
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-----------TIPTIGFNVETVQY--NN--IKFQVWDLGGQTSIR----- 75 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-----------~~~t~~~~~~~~~~--~~--~~~~i~d~~g~~~~~----- 75 (182)
-.++|+++|.+|+|||||+|+|++..+.. ..+|.++....... .+ +.+.+|||||-....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 46899999999999999999999887644 23344443333332 33 679999999943221
Q ss_pred ---------------------hhhhhhCC--CCCEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 76 ---------------------PYWRCYFP--NTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 76 ---------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
......+. .+|+++|+++.+.. .+... ...++.+. .++|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence 11112233 46788888876642 12222 33333332 258999999999996
Q ss_pred C
Q 030122 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 5
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-14 Score=108.38 Aligned_cols=78 Identities=22% Similarity=0.143 Sum_probs=54.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc--c-cCCCceeeEEEE------------------------eCCEEEEEEECCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS--T-IPTIGFNVETVQ------------------------YNNIKFQVWDLGG 70 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~--~-~~t~~~~~~~~~------------------------~~~~~~~i~d~~g 70 (182)
++|+++|.||+|||||+++|.+..... + ..|+........ +....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999876543 2 222222222111 1236789999999
Q ss_pred C----CCChhhhhhh---CCCCCEEEEEEeCC
Q 030122 71 Q----TSIRPYWRCY---FPNTEAVIYVVDSS 95 (182)
Q Consensus 71 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 95 (182)
. +....+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5 3333344444 77999999999986
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-14 Score=108.02 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=102.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCc----eeeEEEEeCCEEEEEEECCCCCCChh---------hhhhhCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFP 83 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~~~~ 83 (182)
.+.|+++|+||+|||||+|.|.+.+..-..|--| .-...+++.++++.+.||+|-..-.. ....-+.
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~ 347 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIE 347 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHh
Confidence 4799999999999999999999988655333333 44556667999999999999654111 1233456
Q ss_pred CCCEEEEEEeCCCc--chHHHHHHHHHHHH-----hccCCCCCeEEEEeeCCCCCCCCCHHHH-HHhhcccccCCCceEE
Q 030122 84 NTEAVIYVVDSSDT--DRIQTAKEEFHAIL-----EEEELKGAVALIFANKQDLPGALDDAAV-SEALELHKIKNRQWAI 155 (182)
Q Consensus 84 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~~-----~~~~~~~~p~i~v~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~ 155 (182)
.+|++++|+|+... ++-..+...+...- ........|++++.||+|+......-.. ...+... .--..++.
T Consensus 348 ~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~i 426 (531)
T KOG1191|consen 348 RADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFPI 426 (531)
T ss_pred hcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccce
Confidence 89999999999432 22222222222221 1112244799999999999865211000 0000000 01112334
Q ss_pred -EEecccCCCCHHHHHHHHHHHHh
Q 030122 156 -FKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 156 -~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.++|+++++|+.++...+...+.
T Consensus 427 ~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 427 VVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred EEEeeechhhhHHHHHHHHHHHHH
Confidence 45999999999999988887664
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-15 Score=108.57 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=73.3
Q ss_pred EEEEEECCCCCCC---hhhhhhhCCC-----CCEEEEEEeCCCcchHHHH-HH-HHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 62 KFQVWDLGGQTSI---RPYWRCYFPN-----TEAVIYVVDSSDTDRIQTA-KE-EFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 62 ~~~i~d~~g~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~s~~~~-~~-~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
.+.+||+||+.+. +..+..+++. ++++++++|.....+..+. .. |+...... ..++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhc
Confidence 6899999998653 4444333332 8999999999664433222 12 22222111 1579999999999998
Q ss_pred CCCCHHHHHHhhcc-----------------------cccC--CCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 132 GALDDAAVSEALEL-----------------------HKIK--NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 132 ~~~~~~~~~~~~~~-----------------------~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.....+.....+.. .... ....+++.+|++++.|++++++++.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 65444333222221 0000 12357899999999999999999988764
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=103.53 Aligned_cols=162 Identities=16% Similarity=0.175 Sum_probs=108.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc-eeeEEEEeCCEEEEEEECCCCCC-------ChhhhhhhC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG-FNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYF 82 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~-~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~ 82 (182)
...+++|+++|..|+||||++|.|+.+...+ ...+.. .......+..-.+.+||+||-.. ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4567899999999999999999999766655 222222 22223334567899999999755 566778888
Q ss_pred CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--------CH----HH-HHHhh-ccccc
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--------DD----AA-VSEAL-ELHKI 148 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--------~~----~~-~~~~~-~~~~~ 148 (182)
...|.++.+++..++. +.--...++++.... .+.++++++|.+|..... .+ .+ +.+.. .....
T Consensus 116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999887753 222233445554433 458999999999986541 11 11 10000 00111
Q ss_pred CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 149 KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
-...-|++..|...+-|++++...++.++-
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 112346888888999999999999998765
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=109.44 Aligned_cols=112 Identities=20% Similarity=0.150 Sum_probs=70.0
Q ss_pred EEEEEEECCCCCCC-----hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC
Q 030122 61 IKFQVWDLGGQTSI-----RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~i~d~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~ 135 (182)
..+.++||||-..- .......+..+|+++||+|....-+..+. ...+.+.... ...|+++|+||+|..+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~--K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG--QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC--CCCCEEEEEEcccCCCccc
Confidence 45789999996431 22344578899999999999875333321 1222232221 2369999999999864222
Q ss_pred --HHHHHHhhc--ccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 136 --DAAVSEALE--LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 136 --~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
.+.+..... +.........+|.+||+.|.|++++++.+..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 233332221 1111112345999999999999999998875
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=114.36 Aligned_cols=141 Identities=17% Similarity=0.119 Sum_probs=91.9
Q ss_pred CChHHHHHHhhcCCCcc---ccCCCceeeEEEEeC------------------CEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 28 FGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYN------------------NIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 28 ~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~------------------~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
++||||+..+.+..... ..-|..+....+... .-.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 34999999999877654 122222222222221 113899999999999888888888999
Q ss_pred EEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC------------------HHHHHH----
Q 030122 87 AVIYVVDSSD---TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD------------------DAAVSE---- 141 (182)
Q Consensus 87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~------------------~~~~~~---- 141 (182)
++++|+|+++ +.+++.+. .+ .. .++|+++++||+|+...-. ..++..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~l-k~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----IL-RQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HH-HH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999986 34444332 12 22 4689999999999863211 011110
Q ss_pred ---hhccccc----------CCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 142 ---ALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 142 ---~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
.+....+ -...++++.+||++|+|+++++.++...
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0111111 1246789999999999999999887643
|
|
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-15 Score=103.04 Aligned_cols=136 Identities=23% Similarity=0.347 Sum_probs=107.1
Q ss_pred ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC----------CCcchHHHHHHHHHHHHhcc
Q 030122 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS----------SDTDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~ 114 (182)
+.||.|+..+.++...+.+.+.|++|+...+..|.+.+++...+++.+.+ .+..++++...++.-++..+
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP 262 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 262 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence 67888888888888999999999999999999999999988877776543 45678899999999999999
Q ss_pred CCCCCeEEEEeeCCCCCCCCCH-----------------HHHHHhh------cccccCCCceEEEEecccCCCCHHHHHH
Q 030122 115 ELKGAVALIFANKQDLPGALDD-----------------AAVSEAL------ELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 115 ~~~~~p~i~v~nK~D~~~~~~~-----------------~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+..+.++|+++||.|+.++... .+....+ .+..-....+.-++++|.+.+||.-+|.
T Consensus 263 WF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFa 342 (359)
T KOG0085|consen 263 WFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFA 342 (359)
T ss_pred cccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHH
Confidence 9999999999999998764211 1111111 1122233456678999999999999999
Q ss_pred HHHHHHhcC
Q 030122 172 WLSNTLKSG 180 (182)
Q Consensus 172 ~l~~~i~~~ 180 (182)
.+-+.+++.
T Consensus 343 aVkDtiLq~ 351 (359)
T KOG0085|consen 343 AVKDTILQL 351 (359)
T ss_pred HHHHHHHHh
Confidence 988877653
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-14 Score=89.84 Aligned_cols=136 Identities=19% Similarity=0.189 Sum_probs=88.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhh----hhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW----RCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----~~~~~~~~~~i~v~d~ 94 (182)
||+++|..|+|||||++++.+.... +..|-.+.... =-.+||||..--...| .....++|++++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAve~~d-------~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAVEFND-------KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-hcccceeeccC-------ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 7999999999999999999876543 22222111100 0146999954333333 2234578999999999
Q ss_pred CCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHH
Q 030122 95 SDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 95 ~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
+++.+ |..- +.. ....|+|-+++|.|+.++.+.+-....+.... .-++|++|+.++.|++++++.|
T Consensus 75 nd~~s~f~p~------f~~---~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 75 NDPESRFPPG------FLD---IGVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred cCccccCCcc------ccc---ccccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHH
Confidence 88755 3211 111 14567999999999996444333333332222 2359999999999999999988
Q ss_pred HH
Q 030122 174 SN 175 (182)
Q Consensus 174 ~~ 175 (182)
..
T Consensus 142 ~~ 143 (148)
T COG4917 142 AS 143 (148)
T ss_pred Hh
Confidence 65
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-13 Score=97.43 Aligned_cols=159 Identities=14% Similarity=0.079 Sum_probs=112.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe------CCEEEEEEECCCCCCChhhhhhhCCCC----CE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY------NNIKFQVWDLGGQTSIRPYWRCYFPNT----EA 87 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~------~~~~~~i~d~~g~~~~~~~~~~~~~~~----~~ 87 (182)
-.|+|+|+.|+|||||+.+|.+.+.. .+..+..+..+.+ +-.++.+|-..|+.-+..+....+... ..
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~--KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSETV--KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccccc--CCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 38999999999999999999887743 3334444444444 346899999999877777666655533 46
Q ss_pred EEEEEeCCCcch-HHHHHHHHHHHHhccCC--------------------------------------------------
Q 030122 88 VIYVVDSSDTDR-IQTAKEEFHAILEEEEL-------------------------------------------------- 116 (182)
Q Consensus 88 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~-------------------------------------------------- 116 (182)
+|++.|.+++.. ++.+..|..-+.+....
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 889999999844 55555554332211000
Q ss_pred ----------CCCeEEEEeeCCCCCC----CCC----HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 117 ----------KGAVALIFANKQDLPG----ALD----DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 117 ----------~~~p~i~v~nK~D~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.++|+++|++|||... ..+ ..++.+...+.++-..+..++++|++...|++-++.+|++.+.
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 2379999999999843 111 1234455555666677888999999999999999999998764
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=102.94 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=80.6
Q ss_pred EEEEEecCCCChHHHHHHhhc--CC-------------------Ccc----ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM--GE-------------------VVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~--~~-------------------~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
..++|-+|.+|||||..+|+- +. +.. +.-++.....++.|.+..+++.|||||++
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 689999999999999999773 11 111 11111133445666999999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
|...+-..+..+|.+++|+|+... +...-..+++.....++|++-++||.|...
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKG-----iE~qT~KLfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKG-----IEPQTLKLFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccC-----ccHHHHHHHHHHhhcCCceEEEeecccccc
Confidence 998888888899999999998753 222223344444558999999999999864
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=112.58 Aligned_cols=113 Identities=17% Similarity=0.023 Sum_probs=79.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcC---------------CCcc----ccCCCceeeEE----EEeCCEEEEEEECCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMG---------------EVVS----TIPTIGFNVET----VQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~---------------~~~~----~~~t~~~~~~~----~~~~~~~~~i~d~~g~ 71 (182)
..--+|+++|+.++|||||+++|+.. ++.+ +..|+...... +.+.++.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 33458999999999999999999752 2221 33344422222 3447899999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.+|.......++.+|++++|+|+...-..+.... +..... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHHHHH----cCCCEEEEEEChhccc
Confidence 9998878888999999999999876432222111 222222 4678899999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-14 Score=99.26 Aligned_cols=132 Identities=25% Similarity=0.372 Sum_probs=102.2
Q ss_pred CCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhccCCC
Q 030122 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEELK 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (182)
|.|+....+.+..++|+.+|++|+...+..|...+.+..++|||+..+. ..++++..++++.+-..+++.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 6667778888899999999999999999999999999999999998653 467889999999999999999
Q ss_pred CCeEEEEeeCCCCCCCC------------------------------CHHHHHHh------hccccc----CCCceEEEE
Q 030122 118 GAVALIFANKQDLPGAL------------------------------DDAAVSEA------LELHKI----KNRQWAIFK 157 (182)
Q Consensus 118 ~~p~i~v~nK~D~~~~~------------------------------~~~~~~~~------~~~~~~----~~~~~~~~~ 157 (182)
.+.+|+++||.|+.... ...-+... +..... ...-+.+++
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 99999999999985321 00001110 100001 123477889
Q ss_pred ecccCCCCHHHHHHHHHHHHhc
Q 030122 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
|+|.+.++|.++|+...+.+.+
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHH
Confidence 9999999999999987776654
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.9e-13 Score=92.55 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=63.0
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--CCHHH
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAA 138 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--~~~~~ 138 (182)
....++++.|..-.....+. -++.+|.|+|+.+.++... .+... -...=++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~q-------i~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPG-------ITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhH-------hhhccEEEEEhhhccccccccHHH
Confidence 46667788874222222221 2578999999987655321 11011 11223899999999853 22222
Q ss_pred HHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+.+..... +...+++++|+++|+|++++|+++.+.++
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 22222211 34567999999999999999999987654
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.3e-14 Score=90.67 Aligned_cols=113 Identities=16% Similarity=0.061 Sum_probs=81.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-cc-CCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~-~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
+||+++|..|+|||+|+.++....+.. +. +|.+ +......+.+.++.+++||+..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 489999999999999999998777754 33 4443 3334455677889999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+..+++.+ |...+... ...++|.++++||.|+.... ++..... ..++++|+++|.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHHH--------HHHHHHhCCCcchhh
Confidence 99988765 66655443 34678999999999974321 1111111 127788999999885
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=97.94 Aligned_cols=115 Identities=14% Similarity=0.040 Sum_probs=58.8
Q ss_pred EEEEEECCCCCCChhhhhhhC--------CCCCEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPYWRCYF--------PNTEAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.+.++|||||-++-..|...- ...-++++++|.....+ ...+..++..+... ...+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 799999999987654443322 34568889999764433 22222222222111 115899999999999986
Q ss_pred CCC---------HHH-----------HHHhhcccccCCCce-EEEEecccCCCCHHHHHHHHHHHH
Q 030122 133 ALD---------DAA-----------VSEALELHKIKNRQW-AIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 133 ~~~---------~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
... .+. +...+......-... .++.+|+++++|+.+++..+-+++
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 210 000 111111111112233 799999999999999999887765
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=104.03 Aligned_cols=155 Identities=16% Similarity=0.118 Sum_probs=105.2
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCC-------------------------------Ccc---ccCCCceeeEEEE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGE-------------------------------VVS---TIPTIGFNVETVQ 57 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~-------------------------------~~~---~~~t~~~~~~~~~ 57 (182)
.++..++.++++|+..+|||||+.+++..- ..+ +.-|+.+....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 456678999999999999999999988611 011 2223333334444
Q ss_pred eCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHH------HHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK------EEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~------~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
.....+++.|+||+..|-+.+......+|++++|+|++.. .|+.-. +-...+++. +.-.-+++++||+|+.
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~--Lgi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRS--LGISQLIVAINKMDLV 328 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHH--cCcceEEEEeeccccc
Confidence 4778999999999999998888888999999999998742 222111 111112222 2345789999999997
Q ss_pred CC-C-CHHHHHHhh-----cccccCCCceEEEEecccCCCCHHHH
Q 030122 132 GA-L-DDAAVSEAL-----ELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 132 ~~-~-~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
+= . ..+++...+ ....++...+.|+.+|..+|+|+-..
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 52 2 223443332 33345667788999999999987653
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-12 Score=100.45 Aligned_cols=161 Identities=13% Similarity=0.088 Sum_probs=113.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe------CCEEEEEEECCCCCCChhhhhhhCCCC----C
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY------NNIKFQVWDLGGQTSIRPYWRCYFPNT----E 86 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~------~~~~~~i~d~~g~~~~~~~~~~~~~~~----~ 86 (182)
.-.|+|+|..++|||||+.+|.+.. +..++.+..+..+++ ...++.+|...|...+..+....+... -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 3489999999999999999987543 255666766666655 335799999999877777776656532 4
Q ss_pred EEEEEEeCCCcch-HHHHHHHHHHHHhc------------------------c------C-----------------C--
Q 030122 87 AVIYVVDSSDTDR-IQTAKEEFHAILEE------------------------E------E-----------------L-- 116 (182)
Q Consensus 87 ~~i~v~d~~~~~s-~~~~~~~~~~~~~~------------------------~------~-----------------~-- 116 (182)
.+|+|+|.+.|.. ++.+..|+.-+... + . .
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 7899999998755 33444433221000 0 0 0
Q ss_pred ------------CCCeEEEEeeCCCCCCC----C----CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 117 ------------KGAVALIFANKQDLPGA----L----DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 117 ------------~~~p~i~v~nK~D~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
.++|++||++|+|.... . ..-++..++.+..+-.++..+++||++...+++.++.+|.+.
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 13799999999997531 1 112345555556666788889999999999999999999998
Q ss_pred Hhc
Q 030122 177 LKS 179 (182)
Q Consensus 177 i~~ 179 (182)
+..
T Consensus 263 l~~ 265 (472)
T PF05783_consen 263 LYG 265 (472)
T ss_pred hcc
Confidence 764
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-12 Score=92.89 Aligned_cols=119 Identities=8% Similarity=0.009 Sum_probs=76.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCCh--h-h-------h
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR--P-Y-------W 78 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~--~-~-------~ 78 (182)
.....++|+|+|.+|+|||||+|.+++..... ...|.........+.+..+.++||||-.... . . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 34556899999999999999999999876543 2233334444445578899999999976442 1 0 1
Q ss_pred hhhCC--CCCEEEEEEeCCCc-chHH--HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 79 RCYFP--NTEAVIYVVDSSDT-DRIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 79 ~~~~~--~~~~~i~v~d~~~~-~s~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
..++. ..+++++|..++.. .+.. .+.+++.+.+... .-.++++|.||+|....
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 22333 56888888765532 1222 3344444433211 12479999999998643
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=93.21 Aligned_cols=161 Identities=11% Similarity=-0.023 Sum_probs=94.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEEeCCEEEEEEECCCCCCCh-------hhh----hhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PYW----RCY 81 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~----~~~ 81 (182)
++|+++|..||||||++|.+++....+ ...|.........+.+..+.++||||-..-. ... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 589999999999999999999887654 1234446666667799999999999942211 011 112
Q ss_pred CCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhc---c-cccCCCceEEE
Q 030122 82 FPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE---L-HKIKNRQWAIF 156 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~---~-~~~~~~~~~~~ 156 (182)
..+.|++++|+...... .-.....++..++.... -.-++|+.|..|.......++...... + ...+..+-.|+
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 35689999999987332 13344455555554322 235788888888776555433322110 1 11121222355
Q ss_pred Eeccc------CCCCHHHHHHHHHHHHhcC
Q 030122 157 KTCAI------KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 157 ~~Sa~------~~~~i~~~~~~l~~~i~~~ 180 (182)
..+.+ ....+.++++.+-+.+.++
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 55554 3457788888777766654
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-11 Score=91.45 Aligned_cols=117 Identities=7% Similarity=0.089 Sum_probs=73.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChhh-------hhhhC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY-------WRCYF 82 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~~ 82 (182)
....++|+++|.+|+||||++|++++..... ..++.+ .........+..+.++||||....... ...++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 3456899999999999999999999876432 222222 222233347899999999997654221 11111
Q ss_pred --CCCCEEEEEEeCCC--cchH-HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 83 --PNTEAVIYVVDSSD--TDRI-QTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 83 --~~~~~~i~v~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
...|+++||..++. .... ..+.+.+..++... --.+.++++|+.|..+
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 25899999965542 2222 23333444433221 2247899999999763
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-12 Score=98.62 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=69.1
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-- 136 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-- 136 (182)
.++.+.++||+|.-.-... ....+|.+++|.+....+.++... ..+++ ..-++|+||+|+......
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHH
Confidence 3578999999996532222 355799999997644444444333 22222 233899999998764332
Q ss_pred --HHHHHhhccccc--CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 137 --AAVSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 137 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.++...+..... ..+..+++.+||+++.|++++++.+.+.+.
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 233333332111 123357999999999999999999987643
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=102.62 Aligned_cols=157 Identities=17% Similarity=0.091 Sum_probs=106.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEE----------------eCCEEEEEEECCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQ----------------YNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~----------------~~~~~~~i~d~~g~~ 72 (182)
..+..-|+++|+..+|||-|+..+.+..... ....+|..+.... ++---+.++||||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 4455679999999999999999998755433 2223332221111 122357889999999
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC-----C-CH-------
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSD---TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-----L-DD------- 136 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~-----~-~~------- 136 (182)
.|..+.....+-||.+|+|+|+.. +.+++.+. ++.. .+.|||+.+||+|.... . ..
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ 623 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQ 623 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHHHH-----HHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHh
Confidence 999999999999999999999864 45555433 2222 68999999999997421 0 00
Q ss_pred ------------HHHHHhhcccc------cC----CCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 137 ------------AAVSEALELHK------IK----NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 137 ------------~~~~~~~~~~~------~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
..+...+.... ++ ..-+.++.|||.+|+||.+++.+|+....
T Consensus 624 ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 624 KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 11111111111 11 13367899999999999999999987654
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=95.23 Aligned_cols=148 Identities=14% Similarity=0.075 Sum_probs=98.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCC----------------------------------cc--ccCCCceeeEEEEeC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEV----------------------------------VS--TIPTIGFNVETVQYN 59 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~----------------------------------~~--~~~t~~~~~~~~~~~ 59 (182)
..+|++..|...-|||||+.||+.... .+ +.-|+.+-+..|...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 458999999999999999999997221 01 222333444555558
Q ss_pred CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HH
Q 030122 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DA 137 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~ 137 (182)
+.+|++.|||||+.|...+....+.||++|+++|+... -++.... ...+... +.=..+++.+||+|+.+-.+ .+
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrR-Hs~I~sL--LGIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRR-HSFIASL--LGIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHH-HHHHHHH--hCCcEEEEEEeeecccccCHHHHH
Confidence 89999999999999988877788899999999998532 1222221 1112111 13346788889999987432 23
Q ss_pred HHHHhhccc--ccCCCceEEEEecccCCCCHH
Q 030122 138 AVSEALELH--KIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 138 ~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
++...+... .+......++.+||..|+|+-
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 343333111 112344579999999999874
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-12 Score=91.55 Aligned_cols=139 Identities=11% Similarity=-0.016 Sum_probs=82.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
...|+++|++|+|||||++.+.+..... .....|. .......+..+.++|+||.. ..+ ....+.+|.+++++|.+
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~ 114 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDAS 114 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecC
Confidence 4579999999999999999998653222 2222221 11122367788999999854 222 23457899999999987
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeE-EEEeeCCCCCCCCC-HHHHHHhhccccc--CCCceEEEEecccCCC
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQDLPGALD-DAAVSEALELHKI--KNRQWAIFKTCAIKGE 164 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 164 (182)
....... ...+..+ .. .+.|. ++|+||+|+..... .+++...+..... .....+++.+||+++-
T Consensus 115 ~~~~~~~-~~i~~~l-~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 115 FGFEMET-FEFLNIL-QV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred cCCCHHH-HHHHHHH-HH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 6443222 1222222 22 35675 45999999874322 2222222211111 1124579999998863
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=98.05 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=107.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCC--Ccc-----------------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE--VVS-----------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~--~~~-----------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (182)
+|++|-+..=|||||+.+|+.+. |.+ +.-|+-.....+.|++++++|+|||||.+|-..-.
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 69999999999999999999754 211 11111122234677899999999999999988888
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcc---ccc--CCCceE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL---HKI--KNRQWA 154 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~---~~~--~~~~~~ 154 (182)
..++-.|++++++|+.+.- +....-.++..+. .+.+-|+|+||+|.+.++..+.+.+.+.+ -.. .+..+|
T Consensus 87 Rvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 8889999999999987531 1111111122222 57788999999999987665433333321 112 346788
Q ss_pred EEEecccCCC----------CHHHHHHHHHHHHh
Q 030122 155 IFKTCAIKGE----------GLFEGMDWLSNTLK 178 (182)
Q Consensus 155 ~~~~Sa~~~~----------~i~~~~~~l~~~i~ 178 (182)
+++.|+..|. +..-+|+.|++.+.
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 9999998763 67778888776553
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-12 Score=95.12 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=58.3
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeC-----------------CEEEEEEECCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQ 71 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~i~d~~g~ 71 (182)
......++|+++|.||+|||||+|+|.+..... ...|+......+.+. ...+.++|+||-
T Consensus 16 ~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 16 GRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred ccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 345566799999999999999999998766433 333445555555442 235899999995
Q ss_pred CCCh----h---hhhhhCCCCCEEEEEEeCC
Q 030122 72 TSIR----P---YWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 72 ~~~~----~---~~~~~~~~~~~~i~v~d~~ 95 (182)
..-. . .....++++|++++|+|..
T Consensus 96 v~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4211 1 2233456899999999973
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-11 Score=91.30 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=65.9
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~ 138 (182)
.++.+.++||+|..... ......+|.++++.+.. +-+++......+ .++|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 36789999999843211 22455678888775433 223443333333 4577899999999986433221
Q ss_pred HHHhh--cc----cccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 139 VSEAL--EL----HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 139 ~~~~~--~~----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
....+ .+ ........+++.+||+++.|++++++++.+..
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 11111 11 11112234689999999999999999998764
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=107.33 Aligned_cols=114 Identities=18% Similarity=0.076 Sum_probs=80.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCc---------------c----ccCCCceeeEEEEe---------------
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVV---------------S----TIPTIGFNVETVQY--------------- 58 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~---------------~----~~~t~~~~~~~~~~--------------- 58 (182)
.+..--+|+++|+.++|||||+++|+..... + +.-|+......+.+
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3444458999999999999999999853311 0 11222211222333
Q ss_pred -CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 59 -NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 59 -~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
.+..+.++||||+.+|.......++.+|++|+|+|+...-..+... .++.+.. .++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHH----CCCCEEEEEECCccc
Confidence 2678899999999999888888889999999999988764433322 2233322 578999999999987
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.7e-12 Score=91.92 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=74.5
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-HHHHhhcccccC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA-AVSEALELHKIK 149 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~-~~~~~~~~~~~~ 149 (182)
+++..+.+.+++++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+..... +....+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 678888888999999999999999887 89999999876532 679999999999997533221 222222 2
Q ss_pred CCceEEEEecccCCCCHHHHHHHHHH
Q 030122 150 NRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
..+++++++||++|.|++++|+.+..
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 34567999999999999999988753
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.8e-12 Score=105.91 Aligned_cols=112 Identities=19% Similarity=0.095 Sum_probs=78.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCC--cc-----------------ccCCCceeeEEEEeC----------CEEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEV--VS-----------------TIPTIGFNVETVQYN----------NIKFQV 65 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~--~~-----------------~~~t~~~~~~~~~~~----------~~~~~i 65 (182)
...-+|+++|+.++|||||+++|+...- .. +.-|+......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 3334899999999999999999986221 00 111222112233332 577999
Q ss_pred EECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 66 WDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
+||||+.+|.......++.+|++|+|+|+.+.-.-+.. ..++.+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH----cCCCEEEEEEChhhh
Confidence 99999999887778888999999999998875333322 23344433 468999999999997
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=88.05 Aligned_cols=147 Identities=15% Similarity=0.113 Sum_probs=82.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc--c-----ccC--CC--------ceeeEEEE--------------------e
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV--S-----TIP--TI--------GFNVETVQ--------------------Y 58 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~--~-----~~~--t~--------~~~~~~~~--------------------~ 58 (182)
....|+|+|+.|||||||++++...... . ..+ .. +.....+. .
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 3457999999999999999998853110 0 000 00 00000000 0
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--H
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--D 136 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~ 136 (182)
.+..+.++++.|.-.... .+....+..+.|+|..+.+.... . ... ....|.++++||+|+.+... .
T Consensus 101 ~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~------~~~~a~iiv~NK~Dl~~~~~~~~ 168 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPG------MFKEADLIVINKADLAEAVGFDV 168 (207)
T ss_pred CCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHh------HHhhCCEEEEEHHHccccchhhH
Confidence 134667777777211111 11123455567777765432111 0 011 13467899999999975322 2
Q ss_pred HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 137 AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
.++...+.. .....+++.+||++|.|++++|+++.+..
T Consensus 169 ~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 169 EKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 233322221 12346799999999999999999998753
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-12 Score=91.18 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=96.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC----CccccCCCceeeEEEEe-CCEEEEEEECCCCCCC-----hhhhhhhCCCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE----VVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSI-----RPYWRCYFPNTE 86 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~-----~~~~~~~~~~~~ 86 (182)
+-||+++|..|||||++=.-++.+- .....+|+.+....+.+ ....+.+||.+|++.+ .......+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4589999999999999766555332 22267777787778877 6699999999999853 234566788999
Q ss_pred EEEEEEeCCCcch---HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhc--cccc-CCCceEEEEecc
Q 030122 87 AVIYVVDSSDTDR---IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE--LHKI-KNRQWAIFKTCA 160 (182)
Q Consensus 87 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~Sa 160 (182)
++++|||++..+- +....+-++.+++.. +...+.+...|+|+......+.+-+... +... ....+.++.+|-
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 9999999986543 333334445555543 7888999999999986543333221111 0111 123456777776
Q ss_pred cC
Q 030122 161 IK 162 (182)
Q Consensus 161 ~~ 162 (182)
.+
T Consensus 162 wD 163 (295)
T KOG3886|consen 162 WD 163 (295)
T ss_pred hh
Confidence 65
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9e-11 Score=91.81 Aligned_cols=151 Identities=14% Similarity=0.067 Sum_probs=105.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
...-+.+.++|+.++|||.+++.+.++.+.+ ...+.. +.+..+.. ....+.+.|.+-. ....+...- ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 3455689999999999999999999988776 333333 33333333 5567777787765 333332222 679999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-----CHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-----DDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.++||++++.+|+.+...+...... ...|+++|++|+|+.+.. .++++...++++. ....|.++.
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S~~~~ 569 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHISSKTL 569 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------CeeeccCCC
Confidence 9999999999999888765554333 789999999999997642 3466777776663 344454432
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
-. .++|..|+...
T Consensus 570 ~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 570 SS-NELFIKLATMA 582 (625)
T ss_pred CC-chHHHHHHHhh
Confidence 22 78888887654
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=93.52 Aligned_cols=151 Identities=17% Similarity=0.045 Sum_probs=109.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.|+..|.---|||||++.+.+..... +.-|+.+.++.....+..+.++|+||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 46778888999999999999865432 555666666666667779999999999998777777778899999999
Q ss_pred eCCCc---chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 93 DSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
+.++. .+.+.+. ++.. ..-...++|+||+|..+....++..+...... .....++|.+|+++|+||+++
T Consensus 82 ~~deGl~~qtgEhL~-----iLdl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~l-~l~~~~i~~~s~~~g~GI~~L 153 (447)
T COG3276 82 AADEGLMAQTGEHLL-----ILDL--LGIKNGIIVLTKADRVDEARIEQKIKQILADL-SLANAKIFKTSAKTGRGIEEL 153 (447)
T ss_pred eCccCcchhhHHHHH-----HHHh--cCCCceEEEEeccccccHHHHHHHHHHHHhhc-ccccccccccccccCCCHHHH
Confidence 98643 3333222 1121 13345599999999987654444333332111 134556899999999999999
Q ss_pred HHHHHHHH
Q 030122 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~i 177 (182)
.+.|....
T Consensus 154 k~~l~~L~ 161 (447)
T COG3276 154 KNELIDLL 161 (447)
T ss_pred HHHHHHhh
Confidence 99998877
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-11 Score=91.72 Aligned_cols=154 Identities=12% Similarity=0.090 Sum_probs=76.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-----eeeEEEEe-CCEEEEEEECCCCC--CChh---hhhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-----FNVETVQY-NNIKFQVWDLGGQT--SIRP---YWRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-----~~~~~~~~-~~~~~~i~d~~g~~--~~~~---~~~~~~~ 83 (182)
.+++|+|+|.+|+|||||+|.|.+-.-.+ .....| .....+.. +.-.+.+||.||.. .+.. +-..-+.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 46899999999999999999998633222 111111 22222333 33468999999953 3322 1222345
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC---------CCCCH----HHH----HHhhccc
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP---------GALDD----AAV----SEALELH 146 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~---------~~~~~----~~~----~~~~~~~ 146 (182)
..|.+|++.+ ++|.....++....+. .++|+.+|-+|+|.. ..-.. +++ .+.+...
T Consensus 114 ~yD~fiii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 114 RYDFFIIISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp G-SEEEEEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred ccCEEEEEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 6788888773 4565555554444443 589999999999951 11111 111 1222222
Q ss_pred ccCCCceEEEEecccCCC--CHHHHHHHHHHHHh
Q 030122 147 KIKNRQWAIFKTCAIKGE--GLFEGMDWLSNTLK 178 (182)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~--~i~~~~~~l~~~i~ 178 (182)
. -..-++|-+|+.+-. .+..+.+.+.+.+.
T Consensus 187 g--v~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 187 G--VSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp T---SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred C--CCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 1 133468888887643 56666666665544
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=100.40 Aligned_cols=113 Identities=17% Similarity=0.034 Sum_probs=76.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCc--c-----------------ccCCCceeeEEEEe----CCEEEEEEECCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVV--S-----------------TIPTIGFNVETVQY----NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~--~-----------------~~~t~~~~~~~~~~----~~~~~~i~d~~g~ 71 (182)
..--+|+++|+.++|||||+.+|+...-. . +.-|+......+.+ .+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 33336999999999999999999853211 0 11222222222333 4678999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.+|.......++.+|++|+|+|+...-.-+.. ..+..... .+.|.++++||+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHH----cCCCeEEEEECchhhc
Confidence 99988778888999999999998765332222 22233222 3567899999999863
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8e-11 Score=87.11 Aligned_cols=154 Identities=14% Similarity=0.058 Sum_probs=96.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC----Ccc------ccCCCceeeEEEEe---------CCEEEEEEECCCCCCChhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE----VVS------TIPTIGFNVETVQY---------NNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~----~~~------~~~t~~~~~~~~~~---------~~~~~~i~d~~g~~~~~~~ 77 (182)
.+++.++|...||||||.+++..-. |.. +.-|.......+.+ +...+.++|.||+...-..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 4899999999999999999998532 221 22233344444444 3356799999997665433
Q ss_pred hhhhCCCCCEEEEEEeCCCcc---hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH----HHHHhh--ccccc
Q 030122 78 WRCYFPNTEAVIYVVDSSDTD---RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA----AVSEAL--ELHKI 148 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~----~~~~~~--~~~~~ 148 (182)
......-.|..++|+|+.... +.+.+. +.++ .-...++|+||+|..++..+. ...... .++..
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhh--hhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 333344468999999987542 222221 1111 234567888888887654432 111111 12222
Q ss_pred C-CCceEEEEecccCC----CCHHHHHHHHHHHHh
Q 030122 149 K-NRQWAIFKTCAIKG----EGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~-~~~~~~~~~Sa~~~----~~i~~~~~~l~~~i~ 178 (182)
. ..+.|++++|+..| +++.++.+.+.+++-
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 2 34589999999999 788887777776654
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-11 Score=94.95 Aligned_cols=161 Identities=11% Similarity=0.132 Sum_probs=115.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
...++|+.++|..++|||+|+++++.+.+.+...+.+ ...+.+.. ....+.+.|.+|... ..|...+|++||
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 3456899999999999999999999999988444444 33333333 667777888887333 345667999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
||.+.+..+|+.+..+...+-.......+|+++++++.-.............-.........+.+|++++.+|.++..+|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 99999999999999888887766666788999998865443322221111111111123445679999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
..+...+..
T Consensus 182 ~~~~~k~i~ 190 (749)
T KOG0705|consen 182 QEVAQKIVQ 190 (749)
T ss_pred HHHHHHHHH
Confidence 998876653
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-10 Score=80.30 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=101.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCCh-h--hhhhhCCCCCEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-P--YWRCYFPNTEAV 88 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-~--~~~~~~~~~~~~ 88 (182)
.+.+|+++|...|||||+..-..+..-+. ...|..+....+.-..+.+.+||.|||-.+- + .....++++-++
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CCceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 45689999999999999988766543322 3344444444444456889999999986542 2 346678899999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhcc--CCCCCeEEEEeeCCCCCCCCC-H---HHHH----HhhcccccCCCceEEEEe
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALD-D---AAVS----EALELHKIKNRQWAIFKT 158 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~D~~~~~~-~---~~~~----~~~~~~~~~~~~~~~~~~ 158 (182)
|+|+|+.+. +.+....+....... -.+++-+=+++.|.|...+.- . .++. +.+.-....+-.+.++-|
T Consensus 106 ifvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 106 IFVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 999997652 333333333333221 137888999999999865321 1 1221 122222223445566667
Q ss_pred cccCCCCHHHHHHHHHHHHhc
Q 030122 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
|-.+ ..|-+.|..+++.+..
T Consensus 184 SIyD-HSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 184 SIYD-HSIFEAFSKVVQKLIP 203 (347)
T ss_pred eecc-hHHHHHHHHHHHHHhh
Confidence 6654 6788889888877653
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=77.99 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=43.8
Q ss_pred EEEEEEECCCCC----CChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q 030122 61 IKFQVWDLGGQT----SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 61 ~~~~i~d~~g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 128 (182)
..+.++|+||-. .....+..++..+|++|+|.+.+...+-.+...+.... .. ....+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence 358899999963 23456788889999999999998865544444443333 22 334489999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=79.11 Aligned_cols=146 Identities=14% Similarity=0.011 Sum_probs=81.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccC-----------------C-CceeeEEEEe--------------------
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIP-----------------T-IGFNVETVQY-------------------- 58 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~-----------------t-~~~~~~~~~~-------------------- 58 (182)
-++|.|.|++|||||+|+.+++..-..++.. . .+.....+..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 3789999999999999999987522111000 0 1111111111
Q ss_pred --CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHh-ccCCCCCeEEEEeeCCCCCCCCC
Q 030122 59 --NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILE-EEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 59 --~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~i~v~nK~D~~~~~~ 135 (182)
....+.|++..|+-... -.+.-..+.-|+|+|.+..+... ++ .+.... .=++|+||.|+.+...
T Consensus 93 ~~~~~Dll~iEs~GNL~~~---~sp~L~d~~~v~VidvteGe~~P---------~K~gP~i~~-aDllVInK~DLa~~v~ 159 (202)
T COG0378 93 DFPDLDLLFIESVGNLVCP---FSPDLGDHLRVVVIDVTEGEDIP---------RKGGPGIFK-ADLLVINKTDLAPYVG 159 (202)
T ss_pred cCCcCCEEEEecCcceecc---cCcchhhceEEEEEECCCCCCCc---------ccCCCceeE-eeEEEEehHHhHHHhC
Confidence 11355566666621110 01111234788888887654211 01 111112 4489999999987544
Q ss_pred H-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 136 D-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 136 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
. -+++..-... -+...+++++|+++|+|++++++|+....
T Consensus 160 ~dlevm~~da~~--~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ADLEVMARDAKE--VNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ccHHHHHHHHHH--hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3 1222222111 23556799999999999999999998754
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=83.75 Aligned_cols=149 Identities=19% Similarity=0.147 Sum_probs=87.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC-----C------CccccC------------------CCceeeEEEEe--------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG-----E------VVSTIP------------------TIGFNVETVQY-------- 58 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~-----~------~~~~~~------------------t~~~~~~~~~~-------- 58 (182)
.-+.|.+-|+||+|||||++.|... . ..+.+| -.+.+...+-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4569999999999999999998751 0 000111 11133333222
Q ss_pred ------------CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEee
Q 030122 59 ------------NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 59 ------------~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~n 126 (182)
.++.+++++|.|--.-. -....-+|.+++|.-+.-.+.++.++.=+-+ ++=++|+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~vVN 175 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIME---------IADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhh---------hccEEEEe
Confidence 34688888888732211 1224568999999988766665544432222 23389999
Q ss_pred CCCCCCCCC-HHHHHHhhcccc--cCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 127 KQDLPGALD-DAAVSEALELHK--IKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 127 K~D~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
|.|...... ..++...+.+.. ...+..+++.|||.++.|++++++.+.+.
T Consensus 176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 999654332 234444443332 23456799999999999999999988763
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-10 Score=83.50 Aligned_cols=57 Identities=28% Similarity=0.345 Sum_probs=40.4
Q ss_pred CCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 117 KGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 117 ~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
...+-++++||+|+.+.. ..+.+...+.. .+...+++.+|+++|+|++++++||...
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456779999999997532 22333222211 2345679999999999999999999874
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-10 Score=91.33 Aligned_cols=112 Identities=18% Similarity=0.069 Sum_probs=82.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC--Ccc-------------------ccCCCceeeEEEEeCC-EEEEEEECCCCCCCh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE--VVS-------------------TIPTIGFNVETVQYNN-IKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~--~~~-------------------~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~ 75 (182)
-+|.++|+-.+||||+..+++... ... +.-|+.....++.|.+ ..++++|||||-+|.
T Consensus 11 RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt 90 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFT 90 (697)
T ss_pred eEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccH
Confidence 479999999999999999988522 111 1222223333556674 999999999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
......++-+|+++.|+|+...-..+.-.-| +... ..++|.++++||+|.....
T Consensus 91 ~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa~----~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 91 IEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQAD----KYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred HHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHHh----hcCCCeEEEEECccccccC
Confidence 8888888999999999999875443333333 3332 2589999999999987653
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-09 Score=82.10 Aligned_cols=152 Identities=12% Similarity=0.019 Sum_probs=87.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC----CCc-------------c--cc---CCCceee---EEEEe-----CCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG----EVV-------------S--TI---PTIGFNV---ETVQY-----NNIKF 63 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~----~~~-------------~--~~---~t~~~~~---~~~~~-----~~~~~ 63 (182)
....+-|+|+|+.++|||||+++|.++ ... . .. .|.+... ..+.+ -..++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 445689999999999999999999997 322 1 12 3333333 34444 23789
Q ss_pred EEEECCCCCC--------Chh---------------------hhhhhCC-CCCEEEEEE-eCC----CcchHHHH-HHHH
Q 030122 64 QVWDLGGQTS--------IRP---------------------YWRCYFP-NTEAVIYVV-DSS----DTDRIQTA-KEEF 107 (182)
Q Consensus 64 ~i~d~~g~~~--------~~~---------------------~~~~~~~-~~~~~i~v~-d~~----~~~s~~~~-~~~~ 107 (182)
.++|++|-.. ... -+...+. +++..|+|. |.+ .++.+... ..++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 9999998421 110 0233444 789999888 653 11233333 3444
Q ss_pred HHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccC--CCCHHHHHHHHH
Q 030122 108 HAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK--GEGLFEGMDWLS 174 (182)
Q Consensus 108 ~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~ 174 (182)
..+.+ .++|+++++||+|-.... ..++...+. ...+++++.+|+.. .+.|..+++.++
T Consensus 174 ~eLk~----~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 174 EELKE----LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHHHh----cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 44433 589999999999943221 222222221 12234566666553 345555555443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-10 Score=82.25 Aligned_cols=152 Identities=17% Similarity=0.123 Sum_probs=94.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCC-----------ccccCCCc------------------eeeEEEEe------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEV-----------VSTIPTIG------------------FNVETVQY------ 58 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~-----------~~~~~t~~------------------~~~~~~~~------ 58 (182)
..+...|.+-|.||+|||||+..|...-. .+.+|-.| .....+..
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 34456999999999999999999875110 00111111 11111111
Q ss_pred --------------CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEE
Q 030122 59 --------------NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 59 --------------~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v 124 (182)
.++.++|++|.|--.-. -....-+|.+++|.-+.-.+.++.++.= ++ .+-=++|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~G---im------EiaDi~v 195 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAG---IM------EIADIIV 195 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhh---hh------hhhheee
Confidence 34678888888733222 1223458999998876666666655532 22 2334899
Q ss_pred eeCCCCCCCCC-HHHHHHhhcccc--c--CCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 125 ANKQDLPGALD-DAAVSEALELHK--I--KNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 125 ~nK~D~~~~~~-~~~~~~~~~~~~--~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
+||.|...... ..++...+.+.. . +.+..+++.|||.+|+|++++++.+.+..
T Consensus 196 INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 196 INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 99999665432 233444443332 2 34677899999999999999999987654
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=86.69 Aligned_cols=118 Identities=13% Similarity=0.035 Sum_probs=73.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCCh-------hh---h
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PY---W 78 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~---~ 78 (182)
+-...++|+++|.+|+||||++|.+++..... ...|...........+..+.++||||-.... .. .
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHH
Confidence 33455799999999999999999999876433 2233333333334477899999999965421 11 1
Q ss_pred hhhCC--CCCEEEEEEeCCCcchH-H--HHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 79 RCYFP--NTEAVIYVVDSSDTDRI-Q--TAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 79 ~~~~~--~~~~~i~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
..++. .+|++++|..+...... + .+.+.+..++-.. -=.-+|||.|+.|..+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence 11333 57999999887543322 2 2233333333221 1236788999999875
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=80.12 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=65.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccc-----------cCCCceeeEEEEe----CCEEEEEEECCCCCCCh---hh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVST-----------IPTIGFNVETVQY----NNIKFQVWDLGGQTSIR---PY 77 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~-----------~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~---~~ 77 (182)
-.++|+|+|..|+|||||+|.|++...... .++..+....... ..+.+.++||||--... ..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 368999999999999999999998664331 1222233333333 34688899999932110 00
Q ss_pred h-----------hhh-------------CCCCCEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 78 W-----------RCY-------------FPNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 78 ~-----------~~~-------------~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
| ..+ =...|+++|+++++.. .+..+ ...++.+. ..+++|-|+.|.|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS-----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc-----ccccEEeEEecccccC
Confidence 0 000 0246899999987643 12211 23334442 4688999999999876
Q ss_pred CC
Q 030122 133 AL 134 (182)
Q Consensus 133 ~~ 134 (182)
..
T Consensus 157 ~~ 158 (281)
T PF00735_consen 157 PE 158 (281)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-09 Score=79.22 Aligned_cols=79 Identities=18% Similarity=0.068 Sum_probs=57.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe------------------CCEEEEEEECCCCCC--
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY------------------NNIKFQVWDLGGQTS-- 73 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~------------------~~~~~~i~d~~g~~~-- 73 (182)
.+++.++|.||+|||||.|.+....... +..|++.+...+.+ ....+.++|++|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999999877432 55566654443333 235788999998532
Q ss_pred -----ChhhhhhhCCCCCEEEEEEeCC
Q 030122 74 -----IRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 74 -----~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
.-.....-++++|+++.|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2233444567899999999975
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=78.92 Aligned_cols=143 Identities=19% Similarity=0.151 Sum_probs=95.7
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCC----------------Ccc-ccCCCceeeEEEEe--CCEEEEEEECCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGE----------------VVS-TIPTIGFNVETVQY--NNIKFQVWDLGGQT 72 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~----------------~~~-~~~t~~~~~~~~~~--~~~~~~i~d~~g~~ 72 (182)
.....+++|..+|...-|||||...+..-- .++ ....+.++...+.| .+.++-..|.||+.
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 345668999999999999999998877510 111 22233345555555 77899999999999
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCCc---chHHHHHHHHHHHHhccCCCCC-eEEEEeeCCCCCCCCCH-----HHHHHhh
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSDT---DRIQTAKEEFHAILEEEELKGA-VALIFANKQDLPGALDD-----AAVSEAL 143 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~-p~i~v~nK~D~~~~~~~-----~~~~~~~ 143 (182)
+|-........+.|++|+|+.+++. .+-+-+ ++.. .-+. -+++++||+|+.++.+. .++.+.+
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi------Llar--qvGvp~ivvflnK~Dmvdd~ellelVemEvreLL 158 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHI------LLAR--QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh------hhhh--hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHH
Confidence 9876666566778999999998763 332211 1111 1355 56677799999975443 2344555
Q ss_pred cccccCCCceEEEEecccC
Q 030122 144 ELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~ 162 (182)
....+.....|++.-|+..
T Consensus 159 s~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 159 SEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHcCCCCCCcceeechhhh
Confidence 5555555677888888774
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-09 Score=76.42 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=69.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-------ccCCCc-------eeeE---------------------------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPTIG-------FNVE--------------------------- 54 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t~~-------~~~~--------------------------- 54 (182)
....|+++|+.|+||||+++.+.+..+.+ +.|+.- ....
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 44589999999999999999999864211 111100 0000
Q ss_pred -----------EEEe---CCEEEEEEECCCCCCC-------------hhhhhhhCCC-CCEEEEEEeCCCcchHHHHHHH
Q 030122 55 -----------TVQY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPN-TEAVIYVVDSSDTDRIQTAKEE 106 (182)
Q Consensus 55 -----------~~~~---~~~~~~i~d~~g~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~ 106 (182)
.+++ ....+.++|+||-... ..+...|+++ .+.+++|+|....-+-.+....
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 0111 2257999999997421 1245567774 4588889987542221122222
Q ss_pred HHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 107 FHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 107 ~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+.+ ...+.|+++|+||.|..+.
T Consensus 185 a~~l----d~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEV----DPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHH----HHcCCcEEEEEECCCCCCc
Confidence 2222 1257899999999999753
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-10 Score=82.48 Aligned_cols=75 Identities=17% Similarity=0.088 Sum_probs=53.0
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-----------------EEEEEEECCCCCCC----h
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSI----R 75 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~~----~ 75 (182)
|+++|.||||||||+|++.+..... ...|+......+.+.+ ..+.++|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999877533 4445555555555532 24899999995432 1
Q ss_pred hh---hhhhCCCCCEEEEEEeC
Q 030122 76 PY---WRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 76 ~~---~~~~~~~~~~~i~v~d~ 94 (182)
.+ ....++++|++++|+|.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 12 22335689999999986
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=76.47 Aligned_cols=98 Identities=18% Similarity=0.072 Sum_probs=63.7
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhh---cccccC
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEAL---ELHKIK 149 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~---~~~~~~ 149 (182)
++.++..+++++|++++|+|++++..- |...+... ..+.|+++|+||+|+.+... ........ ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 577888899999999999999875421 11111111 25689999999999964322 22221111 001111
Q ss_pred CCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 150 NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.....++.+||++|.|++++++++.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11124899999999999999999988653
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-09 Score=81.17 Aligned_cols=78 Identities=17% Similarity=0.099 Sum_probs=55.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-----------------EEEEEEECCCCCCC---
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSI--- 74 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~~--- 74 (182)
++|+++|.||||||||+|++.+..... ...|+......+.+.. ..+.+.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999877322 3445455554444422 35899999995432
Q ss_pred -hh---hhhhhCCCCCEEEEEEeCC
Q 030122 75 -RP---YWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 75 -~~---~~~~~~~~~~~~i~v~d~~ 95 (182)
.. .....++++|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 2233456899999999973
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-09 Score=85.55 Aligned_cols=115 Identities=16% Similarity=0.074 Sum_probs=81.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCccc-cCCC---------------c--eeeEEEEe-------CCEEEEEE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVST-IPTI---------------G--FNVETVQY-------NNIKFQVW 66 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~-~~t~---------------~--~~~~~~~~-------~~~~~~i~ 66 (182)
..+....+|+++|+-+.|||+|+..|..+.-.+. ..+. | +....... +.+-+++.
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 3456667899999999999999999887553321 1100 0 11111111 45678999
Q ss_pred ECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 67 DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 67 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
|||||-.|.......++.+|++++|+|+.+.-.+..-. +++..-..+.|+.+|+||.|..
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-----~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-----IIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-----HHHHHHhccCcEEEEEehhHHH
Confidence 99999999988888889999999999998766554322 2222233679999999999964
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=79.96 Aligned_cols=158 Identities=13% Similarity=-0.007 Sum_probs=98.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCC---cc---ccCCCceeeE--------------EEEe------------CCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEV---VS---TIPTIGFNVE--------------TVQY------------NNIKF 63 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~---~~---~~~t~~~~~~--------------~~~~------------~~~~~ 63 (182)
..++|.++|+..=|||||...|.+--. ++ +.-|+...+. .... --.++
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 458999999999999999999987221 11 1111111000 0000 01468
Q ss_pred EEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHH
Q 030122 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAV 139 (182)
Q Consensus 64 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~ 139 (182)
.|.|.|||+..-+...+...--|++++|++.+.+.--......+-.+ +.. .-..++++-||+|+...+.. +++
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHHHHH
Confidence 89999998876655444444469999999998754333333333222 111 33578999999999864322 112
Q ss_pred HHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.+.. ... --.+.+++.+||..+.||+-+++.+.+.+.
T Consensus 166 k~Fv-kGt-~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 166 KEFV-KGT-VAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHh-ccc-ccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 1111 111 124568999999999999999999988764
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-08 Score=70.18 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=62.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChh-------hhhhhCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-------YWRCYFP 83 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~ 83 (182)
....-||++||-|.+|||||+..+....-.. ...|...-...+.+++..+++.|.||--.-.+ ......+
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence 4456799999999999999999988544322 33444455566777999999999998533221 2334556
Q ss_pred CCCEEEEEEeCCCcch
Q 030122 84 NTEAVIYVVDSSDTDR 99 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s 99 (182)
.+|.+++|.|++..+.
T Consensus 139 taDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 139 TADLILMVLDATKSED 154 (364)
T ss_pred cccEEEEEecCCcchh
Confidence 7999999999986443
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=79.04 Aligned_cols=149 Identities=14% Similarity=0.072 Sum_probs=95.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCChhh--------hhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPY--------WRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~--------~~~~~~ 83 (182)
...-|.++|-.|||||||+++|......+ .+.|.....+.... .+-.+.+.||-|--..-++ +.....
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVa 256 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVA 256 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHh
Confidence 34579999999999999999999654433 56666665665555 5567788899984322111 112244
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeE----EEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEec
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA----LIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~----i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+|.++.|.|++.|+--+.....+.-+.+. ..++.|. +=|-||+|..+..... ... ..+.+|
T Consensus 257 eadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~-----------E~n--~~v~is 322 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEE-----------EKN--LDVGIS 322 (410)
T ss_pred hcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCcc-----------ccC--Cccccc
Confidence 789999999999997654444433333222 2233343 4455666655322110 011 167889
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 030122 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~ 178 (182)
|++|+|.+++.+.+-..+.
T Consensus 323 altgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccCccHHHHHHHHHHHhh
Confidence 9999999999888776654
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.9e-09 Score=71.56 Aligned_cols=94 Identities=17% Similarity=0.108 Sum_probs=61.9
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceE
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA 154 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (182)
+.++.+..+++|++++|+|++++...... .+ ...... .+.|+++|+||+|+.+......+. .+ ......+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l-~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~----~~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KL-ERYVLE---LGKKLLIVLNKADLVPKEVLEKWK-SI----KESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HH-HHHHHh---CCCcEEEEEEhHHhCCHHHHHHHH-HH----HHhCCCc
Confidence 45667778889999999999876432221 11 111221 468999999999986421111111 11 1112346
Q ss_pred EEEecccCCCCHHHHHHHHHHHHh
Q 030122 155 IFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++.+||+++.|++++++.+.+.+.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 899999999999999999987664
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.7e-09 Score=77.69 Aligned_cols=153 Identities=12% Similarity=0.015 Sum_probs=94.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-------------------ccCCCceeeE-----------------EE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-------------------TIPTIGFNVE-----------------TV 56 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-------------------~~~t~~~~~~-----------------~~ 56 (182)
....++||+++|...+|||||+.-|.++.... +..+.|-++. .+
T Consensus 129 ~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L 208 (641)
T KOG0463|consen 129 KDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL 208 (641)
T ss_pred ccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc
Confidence 45568899999999999999998887643211 2222221111 12
Q ss_pred Ee------CCEEEEEEECCCCCCChhhhhh--hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q 030122 57 QY------NNIKFQVWDLGGQTSIRPYWRC--YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 57 ~~------~~~~~~i~d~~g~~~~~~~~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 128 (182)
+| ....++++|.+|+++|-..... .-+-.|-.++++..+.. +....++-+.......+|+++|.+|+
T Consensus 209 dWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-----IiGmTKEHLgLALaL~VPVfvVVTKI 283 (641)
T KOG0463|consen 209 DWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-----IIGMTKEHLGLALALHVPVFVVVTKI 283 (641)
T ss_pred cceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-----ceeccHHhhhhhhhhcCcEEEEEEee
Confidence 22 2246789999999998653322 22345777777765531 11111112222222578999999999
Q ss_pred CCCCCCCHHHHHHhh-------------------------cccccCCCceEEEEecccCCCCHHHHH
Q 030122 129 DLPGALDDAAVSEAL-------------------------ELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 129 D~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|..+++..++-++.+ ..++..++-+++|++|..+|+|+.-+.
T Consensus 284 DMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk 350 (641)
T KOG0463|consen 284 DMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK 350 (641)
T ss_pred ccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence 998876555544332 122334677999999999999987643
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=80.44 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=106.7
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCC----------------------------------CccccCCCceeeEEE
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGE----------------------------------VVSTIPTIGFNVETV 56 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~----------------------------------~~~~~~t~~~~~~~~ 56 (182)
..++..+++++|+|...+||||+..++.... ..+...|++.....+
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 4567889999999999999999998877510 111345666666777
Q ss_pred EeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc---hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.....++.+.|+||+..|-+......+++|..++|+++...+ .|+.--+.-...+......-...++++||+|.+..
T Consensus 153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence 778889999999999999887777788999999999875321 23322111111111111245678999999998764
Q ss_pred CCH----HHHHHhh----c-ccccCCCceEEEEecccCCCCHHHHH
Q 030122 134 LDD----AAVSEAL----E-LHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 134 ~~~----~~~~~~~----~-~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
... ++..+.+ . +..-......++.+|..+|.++++..
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 322 1221111 1 11112356679999999999988754
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-09 Score=79.02 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=64.9
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCce
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
..+....+.++|.+++|+|+.++. ....+..|+.... ..++|+++|+||+|+........+.+.+ ...++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~ 150 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGY 150 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCC
Confidence 334455678999999999998775 4445566655442 2679999999999997532222222222 23345
Q ss_pred EEEEecccCCCCHHHHHHHHHH
Q 030122 154 AIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
.++.+||+++.|++++++.+..
T Consensus 151 ~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 151 QPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred eEEEEEcCCCCCHHHHhhhhcc
Confidence 6999999999999999988764
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.6e-09 Score=77.51 Aligned_cols=157 Identities=15% Similarity=0.023 Sum_probs=98.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-c----------------cCCCceeeEEEEe-----------------
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-T----------------IPTIGFNVETVQY----------------- 58 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~----------------~~t~~~~~~~~~~----------------- 58 (182)
.+..++.+.+.|..+.|||||.-.|..+...+ . .-+..+....+-+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34567899999999999999999988755332 1 1111111111111
Q ss_pred ------CCEEEEEEECCCCCCChhhhh--hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCC
Q 030122 59 ------NNIKFQVWDLGGQTSIRPYWR--CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 59 ------~~~~~~i~d~~g~~~~~~~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~ 130 (182)
.+..+.+.|+.|++.+-.... .+-.+.|-.++++.+++.-+-- -++-+-.....+.|++++.+|+|+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-----tkEHLgi~~a~~lPviVvvTK~D~ 267 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-----TKEHLGIALAMELPVIVVVTKIDM 267 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-----hhHhhhhhhhhcCCEEEEEEeccc
Confidence 224678999999999865332 2335789999999887743311 111111112268999999999999
Q ss_pred CCCCCH----HHHHHhhcc--------------------cccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 131 PGALDD----AAVSEALEL--------------------HKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 131 ~~~~~~----~~~~~~~~~--------------------~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
.++... +++...+.+ ......-+|+|.+|+.+|+|++-+.+.+.
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 876443 233322211 01112368999999999999987665544
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.6e-09 Score=77.60 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=96.0
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc------------------------ccCCCceeeE--EEEe-----
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS------------------------TIPTIGFNVE--TVQY----- 58 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~------------------------~~~t~~~~~~--~~~~----- 58 (182)
+..+...++|++++|...+|||||+.-|..+.... ...++|++.. .+.|
T Consensus 160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 34455668899999999999999998887644221 0112222111 1112
Q ss_pred -------CCEEEEEEECCCCCCChhhhhhhCC--CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q 030122 59 -------NNIKFQVWDLGGQTSIRPYWRCYFP--NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 59 -------~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
...-++++|.+|+.+|.......+. ..|.+.+|+++...-.- ...+.+..+.. .++|++++.+|+|
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~A----L~iPfFvlvtK~D 314 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAA----LNIPFFVLVTKMD 314 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHH----hCCCeEEEEEeec
Confidence 1236789999999998765544443 35778888876543210 11111122211 5899999999999
Q ss_pred CCCCCCH----HHHHHhhccc---------------------ccCCCceEEEEecccCCCCHHHHHH
Q 030122 130 LPGALDD----AAVSEALELH---------------------KIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 130 ~~~~~~~----~~~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+.+.... .++...+... .+...-+|+|.+|+.+|+|++-+-.
T Consensus 315 l~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 315 LVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred cccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 9875333 2333332222 2234557999999999999886543
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-09 Score=69.19 Aligned_cols=52 Identities=19% Similarity=0.038 Sum_probs=37.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCc--eeeEEEEeCCEEEEEEECCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG--FNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~d~~g~ 71 (182)
+++++|.+|+|||||+|++.+..........+ .....+.... .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 89999999999999999999877654222222 3333333333 6799999994
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=69.51 Aligned_cols=55 Identities=15% Similarity=-0.005 Sum_probs=38.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g 70 (182)
...+|+++|.+|+|||||+|++.+.......++.|.......+ ..-.+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 4578999999999999999999987655544444432222222 223478999998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-08 Score=72.47 Aligned_cols=86 Identities=15% Similarity=0.041 Sum_probs=62.6
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-----------------CCEEEEEEECC
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-----------------NNIKFQVWDLG 69 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-----------------~~~~~~i~d~~ 69 (182)
.......++++.++|.|++|||||+|.+.+..... +..|++.+...+.+ -...+++.|++
T Consensus 13 ~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIA 92 (391)
T KOG1491|consen 13 LLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIA 92 (391)
T ss_pred cccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeec
Confidence 34556688999999999999999999999877655 55677666655544 12478999999
Q ss_pred CCCCC-------hhhhhhhCCCCCEEEEEEeCC
Q 030122 70 GQTSI-------RPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 70 g~~~~-------~~~~~~~~~~~~~~i~v~d~~ 95 (182)
|.-+- -.....-++.+|+++.|+++.
T Consensus 93 GLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 93 GLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 85432 222334456899999998854
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=71.61 Aligned_cols=117 Identities=13% Similarity=0.036 Sum_probs=78.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEe-------------C------C----------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQY-------------N------N---------- 60 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~-------------~------~---------- 60 (182)
-..+.-|+++|.-..|||||++.|+.+++.. ..||.......+.. + +
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 3456689999999999999999999998865 55665533332221 0 0
Q ss_pred ------------EEEEEEECCCCCC-----------ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCC
Q 030122 61 ------------IKFQVWDLGGQTS-----------IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELK 117 (182)
Q Consensus 61 ------------~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 117 (182)
-.+.++||||--. |.....=+.+.+|.++++||+..-+--++....+..+.. .
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~ 210 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----H 210 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----C
Confidence 1689999999532 222333356789999999998664433344444444432 3
Q ss_pred CCeEEEEeeCCCCCCCC
Q 030122 118 GAVALIFANKQDLPGAL 134 (182)
Q Consensus 118 ~~p~i~v~nK~D~~~~~ 134 (182)
.-.+-+|+||.|..+..
T Consensus 211 EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDTQ 227 (532)
T ss_pred cceeEEEeccccccCHH
Confidence 44677889999988654
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=70.01 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=38.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceee--EEEEeCCEEEEEEECCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNV--ETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g 70 (182)
..++++++|.||+|||||+|++.+.......+.-|... ..+.. +..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 34799999999999999999999876644333333222 22222 34688999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-08 Score=73.57 Aligned_cols=155 Identities=12% Similarity=0.013 Sum_probs=90.8
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCce--eeEEEEeCCEEEEEEECCCC----------CCChhh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGF--NVETVQYNNIKFQVWDLGGQ----------TSIRPY 77 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~--~~~~~~~~~~~~~i~d~~g~----------~~~~~~ 77 (182)
-|.....++++.|..|+|||+|++.+...+... ..++.|. ....+. -+..+.+.|.||- ..+...
T Consensus 131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~-v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH-VGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee-ccceEEEEecCCcccccCCccCcchHhHh
Confidence 345677899999999999999999999876544 2223331 112222 3568899999992 223334
Q ss_pred hhhhCCCCCE---EEEEEeCCCc---chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC------HHHHHH-hhc
Q 030122 78 WRCYFPNTEA---VIYVVDSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD------DAAVSE-ALE 144 (182)
Q Consensus 78 ~~~~~~~~~~---~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~------~~~~~~-~~~ 144 (182)
...|+-+-+- +.+.+|.+.+ -.. ...+|+. ..++|..+|.||||...... ...+.. ...
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~-~~i~~~g-------e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~ 281 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDN-PEIAWLG-------ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQG 281 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCCh-HHHHHHh-------hcCCCeEEeeehhhhhhhccccccCccccceeehhh
Confidence 5555554333 3333444322 111 1222322 26899999999999865322 011111 000
Q ss_pred cc-ccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 145 LH-KIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 145 ~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
+. ....-..+|+.+|+.++.|+++++-.+..
T Consensus 282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccccceeccCCceeeecccccCceeeeeehhh
Confidence 00 11123456889999999999998766554
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=74.10 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=63.6
Q ss_pred hhhCCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEE
Q 030122 79 RCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 79 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.. +...... .....+++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~---~~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELELV---EALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHH---HHHhCCCeEEE
Confidence 33577899999999999887 78888887765543 578999999999997541 1111111 11123467999
Q ss_pred ecccCCCCHHHHHHHHH
Q 030122 158 TCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~ 174 (182)
+|++++.|+++++.++.
T Consensus 144 vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 144 VSAKTGEGLDELREYLK 160 (287)
T ss_pred EECCCCccHHHHHhhhc
Confidence 99999999999988765
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.7e-08 Score=74.96 Aligned_cols=88 Identities=24% Similarity=0.211 Sum_probs=64.1
Q ss_pred CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
..++|.+++|++.....++..+..|+.... ..++|.++|+||+|+.+....+.+..... .+...+++++.+||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 456899999999988888988888876442 25789999999999975432222211111 112334679999999
Q ss_pred CCCCHHHHHHHHHH
Q 030122 162 KGEGLFEGMDWLSN 175 (182)
Q Consensus 162 ~~~~i~~~~~~l~~ 175 (182)
++.|++++++++..
T Consensus 192 tg~GideL~~~L~~ 205 (347)
T PRK12288 192 TGEGLEELEAALTG 205 (347)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999998865
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=75.07 Aligned_cols=84 Identities=20% Similarity=0.236 Sum_probs=58.8
Q ss_pred CCCCCEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEec
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
..++|.+++|+|+.++...... ..|+..+.. .++|+++|+||+|+.+... ..++...+ ...+++++.+|
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~~g~~v~~vS 148 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEEARELLALY-----RAIGYDVLELS 148 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHHHHHHHHHH-----HHCCCeEEEEe
Confidence 5789999999999888765444 455544432 5789999999999963211 11121111 22345799999
Q ss_pred ccCCCCHHHHHHHHH
Q 030122 160 AIKGEGLFEGMDWLS 174 (182)
Q Consensus 160 a~~~~~i~~~~~~l~ 174 (182)
|+++.|++++++.+.
T Consensus 149 A~~g~gi~~L~~~l~ 163 (298)
T PRK00098 149 AKEGEGLDELKPLLA 163 (298)
T ss_pred CCCCccHHHHHhhcc
Confidence 999999999998764
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-08 Score=67.25 Aligned_cols=55 Identities=18% Similarity=0.056 Sum_probs=40.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g 70 (182)
...+++++|.+|+||||+++++.+.......++.+.......+ .+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 3468999999999999999999976655566666644322111 334789999999
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-08 Score=78.25 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=64.0
Q ss_pred CCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccC
Q 030122 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIK 149 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~ 149 (182)
+++|+.+...+...++++++|+|+.+... .|...+.... .+.|+++|+||+|+.+.. ..+.+..... ...+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence 45677788888889999999999876531 1223333222 367999999999996532 2222221110 0011
Q ss_pred CCc---eEEEEecccCCCCHHHHHHHHHHH
Q 030122 150 NRQ---WAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 150 ~~~---~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
..+ ..++.+||++|.|++++++.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 111 148999999999999999998654
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-07 Score=69.16 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=73.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-----------ccCCCceeeEEEEe----CCEEEEEEECCCCCCC---h
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-----------TIPTIGFNVETVQY----NNIKFQVWDLGGQTSI---R 75 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-----------~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~---~ 75 (182)
....++|.++|+.|+|||||+|.|++..... ..+++.+......+ -.+.++++||||--.+ .
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 4567899999999999999999999863211 23555555555544 3467889999994211 1
Q ss_pred -----------hhhhhhC--------------CCCCEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q 030122 76 -----------PYWRCYF--------------PNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 76 -----------~~~~~~~--------------~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
.++..|+ ...|+++|.+.++. ..+..+. ..++.+- ..+-+|-|+.|+|
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD 173 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS-----KRVNLIPVIAKAD 173 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh-----cccCeeeeeeccc
Confidence 1111222 14689999998663 2233222 2333332 4567788888999
Q ss_pred CCCCCCH
Q 030122 130 LPGALDD 136 (182)
Q Consensus 130 ~~~~~~~ 136 (182)
.....+.
T Consensus 174 ~lT~~El 180 (373)
T COG5019 174 TLTDDEL 180 (373)
T ss_pred cCCHHHH
Confidence 9865443
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.2e-07 Score=72.96 Aligned_cols=143 Identities=16% Similarity=0.185 Sum_probs=82.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCceee-----------------------E---------------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNV-----------------------E--------------- 54 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~-----------------------~--------------- 54 (182)
..+.||++.|..++||||++|.++..+.-+ ..+++.... .
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 456799999999999999999999855433 233222000 0
Q ss_pred ------EEEe-CC------EEEEEEECCCCCC---ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCC
Q 030122 55 ------TVQY-NN------IKFQVWDLGGQTS---IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG 118 (182)
Q Consensus 55 ------~~~~-~~------~~~~i~d~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (182)
.+-+ ++ -.+.++|.||-.. ...-...++.++|++|+|.++.+.-+.. ....++...+ .+
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~----~K 261 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSE----EK 261 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhc----cC
Confidence 0111 00 1466788888543 3334566788999999999866543322 2223333322 34
Q ss_pred CeEEEEeeCCCCCCCCCH--HHHHHh---hcccccCCCceEEEEecccC
Q 030122 119 AVALIFANKQDLPGALDD--AAVSEA---LELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 119 ~p~i~v~nK~D~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.-+.++-||+|.....+. +++..+ +.....+.-.-.+|++|++.
T Consensus 262 pniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 262 PNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred CcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 556666688898765432 344333 11112222334588888653
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.9e-07 Score=64.94 Aligned_cols=83 Identities=12% Similarity=-0.007 Sum_probs=55.5
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC--CCcc----ccCCCceeeEEEEe---CCEEEEEEECCCCCCCh------hhhhhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG--EVVS----TIPTIGFNVETVQY---NNIKFQVWDLGGQTSIR------PYWRCY 81 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~------~~~~~~ 81 (182)
-.-|+++|++++|||+|+|++.+. .+.- ...|.|+......+ .+..+.++||+|..... ......
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 346999999999999999999988 5543 34455544444333 35789999999964321 112223
Q ss_pred CCC--CCEEEEEEeCCCcch
Q 030122 82 FPN--TEAVIYVVDSSDTDR 99 (182)
Q Consensus 82 ~~~--~~~~i~v~d~~~~~s 99 (182)
+.. ++.+||..+......
T Consensus 87 l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 87 LATLLSSVLIYNSWETILGD 106 (224)
T ss_pred HHHHHhCEEEEeccCcccHH
Confidence 333 788888887665433
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-07 Score=62.78 Aligned_cols=88 Identities=18% Similarity=0.094 Sum_probs=57.9
Q ss_pred hCCCCCEEEEEEeCCCcch--HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEe
Q 030122 81 YFPNTEAVIYVVDSSDTDR--IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+.++|.+++|+|+.++.. ...+..++.. . ..+.|+++|+||+|+.+.....++...+.. ......+.+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~----~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~i 75 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKK----E-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHA 75 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHh----c-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEe
Confidence 3678999999999988632 2333333222 1 246899999999999753222233333321 122336889
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 030122 159 CAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i 177 (182)
||+.+.|++++++++.+.+
T Consensus 76 Sa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eccccccHHHHHHHHHHHH
Confidence 9999999999999987653
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=71.36 Aligned_cols=78 Identities=14% Similarity=0.008 Sum_probs=56.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCC-cc---ccCCCceeeEEEEeCC-----------------EEEEEEECCCCCCC--
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEV-VS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSI-- 74 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~-~~---~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~~-- 74 (182)
+++.++|.|++|||||++.+.+... .. ...|+..+...+.+.+ ..+.+.|+||--.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 33 3334555555555522 46889999996432
Q ss_pred -----hhhhhhhCCCCCEEEEEEeCC
Q 030122 75 -----RPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 75 -----~~~~~~~~~~~~~~i~v~d~~ 95 (182)
.......++++|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 223444577899999999974
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.5e-08 Score=66.05 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=38.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCc--eeeEEEEeCCEEEEEEECCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG--FNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~d~~g~ 71 (182)
..++++++|.+|+|||||++++.+..+....+..+ .....+.+. ..+.++||||-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 44799999999999999999999877644222222 222333332 46789999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.5e-08 Score=71.16 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=39.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeE--EEEeCCEEEEEEECCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVE--TVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~d~~g~~ 72 (182)
..++|+++|.||+|||||+|+|.+.......+..|.... .+.. +..+.++||||-.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCcC
Confidence 457999999999999999999998765443333332222 2222 3468899999963
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.5e-08 Score=71.05 Aligned_cols=55 Identities=16% Similarity=0.127 Sum_probs=38.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCce--eeEEEEeCCEEEEEEECCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGF--NVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~d~~g~ 71 (182)
..++++++|.||+|||||+|+|.+.......+..|. ....+... -.+.++||||-
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 458999999999999999999998765442222222 22223332 36789999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.7e-08 Score=75.75 Aligned_cols=126 Identities=17% Similarity=0.059 Sum_probs=89.5
Q ss_pred Cccee-EEEEEecCCCChHHHHHHhhcCC-----------------Ccc--ccC--CCceeeEEEEeCCEEEEEEECCCC
Q 030122 14 PCTHV-LGFSFFIDNFGNLCDTDRLQMGE-----------------VVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 14 ~~~~~-~i~viG~~~~GKssl~~~l~~~~-----------------~~~--~~~--t~~~~~~~~~~~~~~~~i~d~~g~ 71 (182)
+..++ +|.++..-.+||||...|++... |.. +.. |+.--...++|++.++.++||||+
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 33344 59999999999999999987521 111 112 222223456679999999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---HHHHHHhhc
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALE 144 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---~~~~~~~~~ 144 (182)
-+|+-.....++--|+++.|||.+....-+.+..|.. ....++|-+.++||+|...+.- .+.+.+.++
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtltvwrq-----adk~~ip~~~finkmdk~~anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----ADKFKIPAHCFINKMDKLAANFENAVDSIEEKLG 183 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----ccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence 9999888888888899999999987655555555522 2347899999999999876432 344555544
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.6e-07 Score=67.24 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=73.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----------ccCCCceeeEEEEe----CCEEEEEEECCCCCC------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----------TIPTIGFNVETVQY----NNIKFQVWDLGGQTS------ 73 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----------~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~------ 73 (182)
..-.+.+.++|+.|.|||||+|.|+...... ...|..+....... -.+.++++||||--+
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 4445899999999999999999999764332 22244455555555 246788999998421
Q ss_pred -Chh-------hhhhhC-----------C--CCCEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 74 -IRP-------YWRCYF-----------P--NTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 74 -~~~-------~~~~~~-----------~--~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
+++ ....|+ . ..|+++|.+.++.. .+..+. ..++.+. ..+.+|-|+.|.|..
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTL 171 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccC
Confidence 111 112222 1 56899999986642 222222 2223332 467888888999998
Q ss_pred CCCCH
Q 030122 132 GALDD 136 (182)
Q Consensus 132 ~~~~~ 136 (182)
...+.
T Consensus 172 T~~El 176 (366)
T KOG2655|consen 172 TKDEL 176 (366)
T ss_pred CHHHH
Confidence 65433
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-07 Score=62.84 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=53.6
Q ss_pred CEEEEEEeCCCcchHHHHHHHHH-HHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFH-AILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
|.+++|+|+.++.+... .++. ..+.. .++|+++|+||+|+.+.....++...+. ......++.+||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence 68999999988755432 1222 22222 5789999999999964321122221221 1113458999999999
Q ss_pred CHHHHHHHHHHH
Q 030122 165 GLFEGMDWLSNT 176 (182)
Q Consensus 165 ~i~~~~~~l~~~ 176 (182)
|++++++.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.2e-07 Score=78.69 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=67.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccc-----cCC--CceeeEEEEe-CCEEEEEEECCCCC--------CChhhhhhhC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVST-----IPT--IGFNVETVQY-NNIKFQVWDLGGQT--------SIRPYWRCYF 82 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~-----~~t--~~~~~~~~~~-~~~~~~i~d~~g~~--------~~~~~~~~~~ 82 (182)
=.++||++|+||||++++- +..+.-. ..+ .+-.. .+++ -.-.-.++||+|.. .....|..++
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 3799999999999999987 4443221 111 11111 1222 22355689999943 2234465554
Q ss_pred C---------CCCEEEEEEeCCCc-----ch----HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 83 P---------NTEAVIYVVDSSDT-----DR----IQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 83 ~---------~~~~~i~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
. ..|++|+++|+.+- +. ...+...+.++.+. .....|+.+++||+|+..
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 3 47999999997542 11 12334444555433 235899999999999874
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-06 Score=57.27 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=75.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe--CCEEEEEEECC-CCC-----------C---C----
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY--NNIKFQVWDLG-GQT-----------S---I---- 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~d~~-g~~-----------~---~---- 74 (182)
..+||++-|+||+||||++.++.+.--......-|+....+.- .-+-|.+.|+. |.. + |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence 3579999999999999999998742221111111232333322 22344555544 211 0 1
Q ss_pred ---h----hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccc
Q 030122 75 ---R----PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK 147 (182)
Q Consensus 75 ---~----~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~ 147 (182)
. +-....+..+|++| +|=--+ ++.....|.+.+......+.|++.++.+.+.. .+.+.+.
T Consensus 84 ~~le~i~~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~------P~v~~ik--- 150 (179)
T COG1618 84 EGLEEIAIPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRH------PLVQRIK--- 150 (179)
T ss_pred HHHHHHhHHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCC------hHHHHhh---
Confidence 1 11122334456554 453222 33333334444444334678988888876542 2222221
Q ss_pred cCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 148 IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
+...+.+| .+.+|-+.+++.+.+.+...
T Consensus 151 -~~~~v~v~----lt~~NR~~i~~~Il~~L~~~ 178 (179)
T COG1618 151 -KLGGVYVF----LTPENRNRILNEILSVLKGE 178 (179)
T ss_pred -hcCCEEEE----EccchhhHHHHHHHHHhccC
Confidence 11122233 66677779999998887643
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-07 Score=68.47 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=96.1
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcC----------CC------cc-ccCCCceeeEEEEe--CCEEEEEEECCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMG----------EV------VS-TIPTIGFNVETVQY--NNIKFQVWDLGGQT 72 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~----------~~------~~-~~~t~~~~~~~~~~--~~~~~~i~d~~g~~ 72 (182)
..+..+++|.-||...=|||||.-.+..- ++ ++ ....+.++...+.| ...++--.|.||+.
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 34567889999999999999998877641 11 11 23334466666666 56778888999999
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-----HHHHhhcccc
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA-----AVSEALELHK 147 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~-----~~~~~~~~~~ 147 (182)
+|-........+-|++|+|+..++.. +....+.+....+. .=..+++++||.|+.++.+.- ++.+.+....
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g 204 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG 204 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC
Confidence 98776666677889999999988742 12222222222222 234678888999998654322 2344444445
Q ss_pred cCCCceEEEEeccc
Q 030122 148 IKNRQWAIFKTCAI 161 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~ 161 (182)
+....+|++.-||.
T Consensus 205 f~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 205 FDGDNTPVIRGSAL 218 (449)
T ss_pred CCCCCCCeeecchh
Confidence 55677888877765
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-06 Score=65.28 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=53.3
Q ss_pred CEEEEEEECCCCCCChh-hhh---hh--CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRP-YWR---CY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
++.+.++||+|...... +.. .. ..+.|..++|.|+......-.....|... --+--+++||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCCCEEEEeeecCCCC
Confidence 46799999999764322 111 11 22578899999986543322222222221 1235788999998653
Q ss_pred CCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 134 LDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 134 ~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
... -.+....+ .|+.+++ +|++++++.
T Consensus 295 ~G~~ls~~~~~~--------~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GGAALSIAYVIG--------KPILFLG--VGQGYDDLI 322 (336)
T ss_pred ccHHHHHHHHHC--------cCEEEEe--CCCChhhcc
Confidence 321 22232222 3366665 788888765
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-07 Score=65.62 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=34.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCc--------cccCCCceeeE--EEEeCCEEEEEEECCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVV--------STIPTIGFNVE--TVQYNNIKFQVWDLGG 70 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~--------~~~~t~~~~~~--~~~~~~~~~~i~d~~g 70 (182)
.+++++|.+|+|||||+|.|.+.... ...+..|.... .+.... .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 58999999999999999999975421 11111122222 222222 579999999
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-07 Score=62.58 Aligned_cols=52 Identities=15% Similarity=0.041 Sum_probs=36.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g 70 (182)
...+++++|.+|+|||||+|.+.+..... ...|.... .+.. ...+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKL-DNKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEe-cCCEEEEECCC
Confidence 45789999999999999999999865432 22222222 2222 24688999998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-07 Score=64.60 Aligned_cols=89 Identities=17% Similarity=0.071 Sum_probs=57.6
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEE
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.....+.++|.+++|+|++++..-... .. ... ..+.|+++|+||+|+.+......+.+.+. .....++
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~i----~~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~vi 79 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP-LL----EKI--LGNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKVL 79 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh-hh----HhH--hcCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeEE
Confidence 445567789999999999876432111 11 111 13579999999999964321112211111 1123589
Q ss_pred EecccCCCCHHHHHHHHHHHH
Q 030122 157 KTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~i 177 (182)
.+|++++.|++++.+.+...+
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEECCCcccHHHHHHHHHHHH
Confidence 999999999999999888764
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=62.22 Aligned_cols=80 Identities=15% Similarity=-0.035 Sum_probs=56.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCc-eeeEEEEeCCEEEEEEECCCCCCC------h-hhhhhhCCCCCE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIG-FNVETVQYNNIKFQVWDLGGQTSI------R-PYWRCYFPNTEA 87 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~-~~~~~~~~~~~~~~i~d~~g~~~~------~-~~~~~~~~~~~~ 87 (182)
-||.++|-|.+||||++..+.+..... +..|.- .....+.+++-++++.|.||--+- + .+.....+.|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 489999999999999999998654322 333332 334455678889999999984221 1 123345567999
Q ss_pred EEEEEeCCCc
Q 030122 88 VIYVVDSSDT 97 (182)
Q Consensus 88 ~i~v~d~~~~ 97 (182)
+++|.|+..|
T Consensus 140 i~~vld~~kp 149 (358)
T KOG1487|consen 140 IFIVLDVLKP 149 (358)
T ss_pred EEEEeeccCc
Confidence 9999997653
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-06 Score=68.07 Aligned_cols=140 Identities=12% Similarity=-0.006 Sum_probs=80.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
.++-++|+||||+|||||++.|...-.......+.-.+..+..+..++++.+.|. ....+. ....-+|.+++.+|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEEeccc
Confidence 3568889999999999999988753322211111111222333778899999883 333333 3345689999999976
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccC--CCceEEEEecccC
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIK--NRQWAIFKTCAIK 162 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~Sa~~ 162 (182)
-.-.++. ... ..++... .=..++-|+++.|+..... ...+...+...++. ..+..+|+.|-..
T Consensus 145 fGfEMET-mEF-Lnil~~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 145 FGFEMET-MEF-LNILISH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred cCceehH-HHH-HHHHhhc--CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 4322221 122 2233332 1234677889999986543 23343333322222 2456688888653
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.2e-07 Score=69.28 Aligned_cols=56 Identities=16% Similarity=-0.033 Sum_probs=40.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~ 71 (182)
...++.|+|-||+||||++|+|.+.......+.-|+......+ -.-.+.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence 3478999999999999999999988875533333433333222 2334889999994
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-06 Score=68.70 Aligned_cols=110 Identities=15% Similarity=0.037 Sum_probs=76.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC-----------------cc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV-----------------VS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~-----------------~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+|.++-.-.+||||+.++++.... .+ +.-|+.--...+.|...+++++|||||-+|.-.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence 488899999999999999875221 00 111111222345568899999999999998766
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
-...++--|++|+|+|....---+....| ++... .++|.+.++||+|...+
T Consensus 121 VeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~r----y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 121 VERALRVLDGAVLVLDAVAGVESQTETVW-RQMKR----YNVPRICFINKMDRMGA 171 (721)
T ss_pred ehhhhhhccCeEEEEEcccceehhhHHHH-HHHHh----cCCCeEEEEehhhhcCC
Confidence 66677778999999997654333333333 33322 58999999999998653
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.8e-07 Score=59.03 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=48.3
Q ss_pred hhCCCCCEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
..+..+|++++|+|+.++.+.. .+..++... ..++|+++|+||+|+.+.....++.+.+ +.....++.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~ 76 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVF 76 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEE
Confidence 3467899999999998876533 344443322 1478999999999986432222222222 122246899
Q ss_pred ecccCCCC
Q 030122 158 TCAIKGEG 165 (182)
Q Consensus 158 ~Sa~~~~~ 165 (182)
+||.++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99987653
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.9e-06 Score=62.35 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=74.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC----Cc------cc-c-----------CCCceeeEEE-----------------E
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE----VV------ST-I-----------PTIGFNVETV-----------------Q 57 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~----~~------~~-~-----------~t~~~~~~~~-----------------~ 57 (182)
.-.|+++|++|+||||++..+...- .. +. . ...++..... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999999887521 00 00 0 0011111110 0
Q ss_pred eCCEEEEEEECCCCCCChhh-------hhhh-----CCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEE
Q 030122 58 YNNIKFQVWDLGGQTSIRPY-------WRCY-----FPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~-------~~~~-----~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v 124 (182)
..++.+.++||+|....... .... -...+..++|+|++... .+..+. ..... --+.-+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~----~f~~~----~~~~giI 265 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAK----AFHEA----VGLTGII 265 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHH----HHHhh----CCCCEEE
Confidence 14578999999997543221 1111 12467889999987532 233222 11111 1355789
Q ss_pred eeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 125 ANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 125 ~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
+||.|....-. .-.+..... .|+.+++ +|++++++-
T Consensus 266 lTKlD~t~~~G~~l~~~~~~~--------~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADELG--------IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCccHHHHHHHHHC--------CCEEEEe--CCCChhhCc
Confidence 99999654321 123333332 3477777 778887654
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-06 Score=64.00 Aligned_cols=91 Identities=20% Similarity=0.116 Sum_probs=59.8
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEE
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.....++.+|++++|+|+..+.+-.. ..+..++ .+.|+++|+||+|+.+......+.+.+.. ...+++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~vi 81 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKAL 81 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeEE
Confidence 34556788999999999987644221 1112222 35799999999999643212222222211 123589
Q ss_pred EecccCCCCHHHHHHHHHHHHhc
Q 030122 157 KTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
.+|++++.|++++.+.+.+.+.+
T Consensus 82 ~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 82 AINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EEECCCcccHHHHHHHHHHHHHH
Confidence 99999999999999888876643
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-05 Score=62.39 Aligned_cols=81 Identities=16% Similarity=0.316 Sum_probs=54.2
Q ss_pred EEEEEEECCCCC-------------CChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeC
Q 030122 61 IKFQVWDLGGQT-------------SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 61 ~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK 127 (182)
-+..++|.||-- ..-.+..+|.++.+++|+|+-- .|.+.-..-..++.......+...|+|++|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 367889999831 2234677889999999999942 222222333355666666678899999999
Q ss_pred CCCCCCC--CHHHHHHhhc
Q 030122 128 QDLPGAL--DDAAVSEALE 144 (182)
Q Consensus 128 ~D~~~~~--~~~~~~~~~~ 144 (182)
.|+.+.+ +++.+.+.+.
T Consensus 489 VDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred cchhhhccCCHHHHHHHHh
Confidence 9998753 3455555543
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-05 Score=56.67 Aligned_cols=120 Identities=14% Similarity=0.173 Sum_probs=67.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc----------ccCCCceeeEE--EEeC--CEEEEEEECCCCCCC---hhhh-
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS----------TIPTIGFNVET--VQYN--NIKFQVWDLGGQTSI---RPYW- 78 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~----------~~~t~~~~~~~--~~~~--~~~~~i~d~~g~~~~---~~~~- 78 (182)
.++|.|+|.+|.|||||+|.++...... ...|+++...+ +.-+ ..+++++||||--++ ...|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 5799999999999999999998654322 22333322221 2223 356788999994221 1111
Q ss_pred ----------hhhC------------C--CCCEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 79 ----------RCYF------------P--NTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 79 ----------~~~~------------~--~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
..|+ . ..++++|.+..+. .++.-+. ..++.+- .-.-++-|+.|.|...-
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt-----~vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT-----EVVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh-----hhheeeeeEeecccccH
Confidence 1122 1 3578888887663 2222221 2222222 22456777889998765
Q ss_pred CCHHHHHHh
Q 030122 134 LDDAAVSEA 142 (182)
Q Consensus 134 ~~~~~~~~~ 142 (182)
.+..++.+.
T Consensus 200 eEr~~Fkqr 208 (336)
T KOG1547|consen 200 EERSAFKQR 208 (336)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.9e-06 Score=62.57 Aligned_cols=89 Identities=20% Similarity=0.164 Sum_probs=58.9
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEE
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
....+..+|++++|+|+..+.+.+. .++.... .+.|+++|+||+|+.+......+.+.+. ..+.+++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~ 85 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKALA 85 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEEE
Confidence 4456788999999999987644221 1222222 2689999999999864311222222221 11245899
Q ss_pred ecccCCCCHHHHHHHHHHHHh
Q 030122 158 TCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+|++++.|++++.+.+...+.
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred EECCCcccHHHHHHHHHHHHH
Confidence 999999999999988877654
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.8e-06 Score=68.36 Aligned_cols=107 Identities=17% Similarity=0.140 Sum_probs=74.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc---------------cccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV---------------STIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~---------------~~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~ 79 (182)
+|+++.+..=|||||...|...... +-..+-|+.- ..+.. +++.++++|+|||-+|.....
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs 90 (887)
T KOG0467|consen 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS 90 (887)
T ss_pred EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhh
Confidence 6999999999999999999853311 1112222222 22333 789999999999999999888
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCC
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~ 130 (182)
....-+|+++..+|+...-.-+.. .++...+..+...++|+||+|.
T Consensus 91 sas~l~d~alvlvdvvegv~~qt~-----~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 91 SASRLSDGALVLVDVVEGVCSQTY-----AVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhcCCcEEEEeeccccchhHH-----HHHHHHHHccCceEEEEehhhh
Confidence 888889999999998764222211 1222223356778999999993
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=59.06 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=53.8
Q ss_pred CCEEEEEEECCCCCCChhhhh-------hhC-----CCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEe
Q 030122 59 NNIKFQVWDLGGQTSIRPYWR-------CYF-----PNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFA 125 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~-------~~~-----~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~ 125 (182)
.++.+.++||+|......... ... ..+|..++|+|++... .+..+ ....+.. -+.-+++
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~----~~~g~Il 224 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV----GLTGIIL 224 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC----CCCEEEE
Confidence 457899999999765433211 111 2378999999986432 23322 2222211 2468899
Q ss_pred eCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 126 NKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 126 nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
||.|....... -.+..... .|+.+++ +|++++++-
T Consensus 225 TKlDe~~~~G~~l~~~~~~~--------~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 225 TKLDGTAKGGIILSIAYELK--------LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred EccCCCCCccHHHHHHHHHC--------cCEEEEe--CCCChHhCc
Confidence 99998654321 23333332 3366666 777776654
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.4e-07 Score=60.26 Aligned_cols=24 Identities=8% Similarity=-0.096 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-.++++|++|||||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999999999999864
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.8e-06 Score=64.67 Aligned_cols=87 Identities=21% Similarity=0.194 Sum_probs=52.7
Q ss_pred CCCCC-EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCc---eEEE
Q 030122 82 FPNTE-AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQ---WAIF 156 (182)
Q Consensus 82 ~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~---~~~~ 156 (182)
+...+ .+++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+.+.. ..+.+..... ...+..+ ..++
T Consensus 66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k~~g~~~~~v~ 137 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAKELGLRPVDVV 137 (365)
T ss_pred hcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHHhcCCCcCcEE
Confidence 34445 899999987743 11222332221 367999999999996532 1222211110 0111111 2489
Q ss_pred EecccCCCCHHHHHHHHHHH
Q 030122 157 KTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~ 176 (182)
.+||+++.|++++++.+.+.
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998764
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=2e-06 Score=65.63 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=34.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc------eeeEEEEeCCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG------FNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~------~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (182)
.++|+|.+|+|||||+|+|.+..... .....+ .....+.... ...++||||-..+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCccc
Confidence 48999999999999999999765432 111111 1111122211 12489999976654
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.6e-06 Score=56.27 Aligned_cols=22 Identities=5% Similarity=-0.159 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-++++|..|+|||||++++...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999998864
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-05 Score=61.49 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=55.4
Q ss_pred CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
..++|.+++|+++...-....+..++..+.. .++|.++|+||+|+.+. .++..+.+... ..+++++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 5688999999999643333333333333322 57788999999999754 22221111111 335679999999
Q ss_pred CCCCHHHHHHHHH
Q 030122 162 KGEGLFEGMDWLS 174 (182)
Q Consensus 162 ~~~~i~~~~~~l~ 174 (182)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999888874
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.4e-06 Score=64.40 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV 42 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~ 42 (182)
.++|+|++|+|||||+|.|.+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 489999999999999999997543
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=61.76 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=62.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhc------CCCc----c-cc-----------CCCceeeEEEEe----------------
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM------GEVV----S-TI-----------PTIGFNVETVQY---------------- 58 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~------~~~~----~-~~-----------~t~~~~~~~~~~---------------- 58 (182)
...|+++|++||||||++.+|.. .... + +. ...++.......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999863 1100 0 10 011111111100
Q ss_pred -CCEEEEEEECCCCCCChh-hhh---h--hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 59 -NNIKFQVWDLGGQTSIRP-YWR---C--YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 59 -~~~~~~i~d~~g~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
.++.+.++||+|...... +.. . ...+++.+++|+|+.-...-......|.. .--+.-+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~-------~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD-------SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh-------ccCCcEEEEECccCC
Confidence 257899999999654432 111 1 12256889999998654332222233222 123567888999975
Q ss_pred C
Q 030122 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 4
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.8e-06 Score=59.88 Aligned_cols=53 Identities=9% Similarity=-0.002 Sum_probs=34.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---c--------cCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---T--------IPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~--------~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
-.++++|.+|+|||||+|+|.+..... . ..|..... +...+ -.++||||-..+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFHG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcCC--cEEEeCCCcccc
Confidence 378999999999999999999754322 1 12222222 22222 378999996554
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.8e-05 Score=52.21 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=35.0
Q ss_pred CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q 030122 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
++.+.++||+|.... ...++..+|-+++|...+-.+. ....+... ...-=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~----y~~~k~~~-----~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDD----IQAIKAGI-----MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhH----HHHhhhhH-----hhhcCEEEEeCCC
Confidence 568999999885422 2346778999999887652222 22111111 2233378899987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.5e-05 Score=67.41 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=65.7
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEEe-CCEEEEEEECCCCC--------CChhhhhhhC---
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQY-NNIKFQVWDLGGQT--------SIRPYWRCYF--- 82 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~i~d~~g~~--------~~~~~~~~~~--- 82 (182)
-+|||++|+||||++..- +.+|.- .....+......++ -+-.-.++||.|.. ..+..|..++
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 589999999999988643 222221 11111122122222 34466788999843 2234555442
Q ss_pred ------CCCCEEEEEEeCCCc------ch---HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 83 ------PNTEAVIYVVDSSDT------DR---IQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 83 ------~~~~~~i~v~d~~~~------~s---~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
+.-|++|+.+|+.+- +. ...+...+.++.+. .....|+.+++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 356999999997542 11 22334444555333 346789999999999875
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.4e-05 Score=60.06 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=64.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC---C--cc----ccCC---------------CceeeEEEE-----------eCCE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE---V--VS----TIPT---------------IGFNVETVQ-----------YNNI 61 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~---~--~~----~~~t---------------~~~~~~~~~-----------~~~~ 61 (182)
.-.++|+|++|+||||++.+|...- . .. ...+ .++....+. +.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3478999999999999999987531 1 00 0000 111111111 1456
Q ss_pred EEEEEECCCCCCChhhh----hh--hCCCCCEEEEEEeCCCc-chHHHHHHHHHHHHhccCCC-CCeEEEEeeCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPYW----RC--YFPNTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEELK-GAVALIFANKQDLPG 132 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~----~~--~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~-~~p~i~v~nK~D~~~ 132 (182)
.+.++||+|........ .. ......-.++|++.+.. +.+......|.......... .-+--+++||.|...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 89999999976443211 11 11234556889988654 44565555555443221100 013467779999765
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.6e-06 Score=62.37 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=35.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCc-----c--ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVV-----S--TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~-----~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
.++.++|.+|+|||||+|++.+.... . ..|........+.. .-.+.++||||-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCCC
Confidence 48999999999999999999975321 1 12211122222332 12357999999643
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00013 Score=50.36 Aligned_cols=22 Identities=5% Similarity=-0.319 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
++|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-05 Score=42.77 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCCEEEEEEeCCCc--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q 030122 84 NTEAVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 84 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
-.++++|++|++.. .++++-...++++.... .+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 36899999999875 45777788888886653 5899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.4e-05 Score=51.76 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=39.3
Q ss_pred CEEEEEEECCCCCCChhhh----hhh--CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRPYW----RCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
+..+.+.|++|...+.... ..+ ....+.+++|+|.....+ ...+...+.+. .+ ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~---~~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEA---LG-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhh---CC-CCEEEEECCcCCCC
Confidence 4578899999975332211 111 134899999999864432 22333333322 12 35777799998653
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.2e-05 Score=61.87 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=33.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-------ccCCCceeeEEEEeCCEEEEEEECCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 72 (182)
.++.++|.+|+|||||+|+|....... ..|........+...+ ...++||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCcc
Confidence 379999999999999999998543111 1222222222333321 24799999963
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.99 E-value=9e-06 Score=57.19 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=59.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCC----Ccc------------------ccCCCceeeEEEE-----------------eC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE----VVS------------------TIPTIGFNVETVQ-----------------YN 59 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~----~~~------------------~~~t~~~~~~~~~-----------------~~ 59 (182)
.|+++|++||||||.+-+|...- ... +....++...... -+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 58999999999999988876411 000 0111111111110 03
Q ss_pred CEEEEEEECCCCCCChhh----hhhhC--CCCCEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRPY----WRCYF--PNTEAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
+..+.++||+|....... ...+. ...+-+++|.+++.... +..+...+..+ + +--++.+|.|...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------G-IDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------S-TCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------c-CceEEEEeecCCC
Confidence 467999999997665431 11111 15678999999876543 33222222111 2 2356799999865
Q ss_pred C
Q 030122 133 A 133 (182)
Q Consensus 133 ~ 133 (182)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 3
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.1e-06 Score=60.32 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
..+++|.+|+|||||+|+|....
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 68999999999999999999743
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.9e-06 Score=60.41 Aligned_cols=57 Identities=11% Similarity=-0.076 Sum_probs=35.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCC--Cc----eeeEEEEeCCEEEEEEECCCCCCCh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPT--IG----FNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t--~~----~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (182)
-.++++|++|+|||||+|.|.+..... ...+ .| .....+.... ...++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 479999999999999999999765332 1100 11 1112222221 23689999976653
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.3e-05 Score=45.65 Aligned_cols=97 Identities=12% Similarity=-0.016 Sum_probs=55.9
Q ss_pred EEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhh-hhhhCCCCCEEEEEEeCCCcc
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-WRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~ 98 (182)
+++.|.+|+||||+...+...-.. .+.....++ .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~- 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL- 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-
Confidence 678899999999999888743211 122222222 7889999986543321 14455678999999976643
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEee
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~n 126 (182)
++...................+..++.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3333333322222222224555555544
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.9e-05 Score=55.25 Aligned_cols=23 Identities=4% Similarity=-0.138 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.+-++|+||.||||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 46689999999999999999875
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=3e-05 Score=58.15 Aligned_cols=25 Identities=8% Similarity=-0.177 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEV 42 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~ 42 (182)
..++++|++|+|||||+|.|.+...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 3689999999999999999987543
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.1e-05 Score=59.68 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=59.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCC----c------c------------ccCCCceeeEEEEe--------------CCE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEV----V------S------------TIPTIGFNVETVQY--------------NNI 61 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~----~------~------------~~~t~~~~~~~~~~--------------~~~ 61 (182)
-.|+++|++||||||++..|...-. . + +....++......- .+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 4799999999999999999864110 0 0 00011111111000 136
Q ss_pred EEEEEECCCCCCChhh----hhhhC--CCCCEEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPY----WRCYF--PNTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+.++||+|....... ...++ ...+.+++|+|++-. ..+..+...|.. --.--+++||.|....
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~--------~~idglI~TKLDET~k 392 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD--------IHIDGIVFTKFDETAS 392 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC--------CCCCEEEEEcccCCCC
Confidence 8999999997543221 12222 245778899987533 223333322221 1234678899998753
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.9e-05 Score=56.59 Aligned_cols=111 Identities=14% Similarity=0.208 Sum_probs=68.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEEe----CCEEEEEEECCCC-------CCChh----
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQY----NNIKFQVWDLGGQ-------TSIRP---- 76 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~----~~~~~~i~d~~g~-------~~~~~---- 76 (182)
.++|+.+|..|.|||||+..|++..+.. ..|++.....+... -..++.+.||.|- +.|.+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 5799999999999999999999988755 33444444444333 2367889999983 12222
Q ss_pred ---hhhhh-------------CC--CCCEEEEEEeCCCcchHHHHHHH-HHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 77 ---YWRCY-------------FP--NTEAVIYVVDSSDTDRIQTAKEE-FHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 77 ---~~~~~-------------~~--~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
....| ++ ..++++|.+.++. .+++.+.-. ++.+ ..+.-+|-++-|.|....
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~L-----dskVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKL-----DSKVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHH-----hhhhhhHHHHHHhhhhhH
Confidence 11111 22 4577888887663 344444322 1222 245667777789987754
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.5e-05 Score=51.46 Aligned_cols=21 Identities=10% Similarity=-0.205 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+++.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
|
... |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00041 Score=52.48 Aligned_cols=92 Identities=22% Similarity=0.143 Sum_probs=51.2
Q ss_pred EEEEEEECCCCCCChhhhhhhCC--------CCCEEEEEEeCCCcchHH-HHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFP--------NTEAVIYVVDSSDTDRIQ-TAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
....++++.|-..=.+....+.. .-|++|.|+|+.+-.... .....+.+-+.. .+ ++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD---~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD---VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc---EEEEecccCC
Confidence 45667777775544333222222 347899999987644322 233443333333 23 8999999999
Q ss_pred CCCCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 132 GALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
++...+.+...+.. -++..+++.++..
T Consensus 159 ~~~~l~~l~~~l~~---lnp~A~i~~~~~~ 185 (323)
T COG0523 159 DAEELEALEARLRK---LNPRARIIETSYG 185 (323)
T ss_pred CHHHHHHHHHHHHH---hCCCCeEEEcccc
Confidence 76533333333221 2445567777763
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=46.53 Aligned_cols=101 Identities=16% Similarity=0.054 Sum_probs=58.0
Q ss_pred EEEEec-CCCChHHHHHHhhcCCCccccCCCceeeEEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 20 GFSFFI-DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 20 i~viG~-~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
|+++|. .|+||||+...|...-.... +....-++. ....+.++|+|+.... .....+..+|.++++.+.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~ 75 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD 75 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC
Confidence 344444 79999998877653221110 111111111 1227899999986543 3344667899999999765
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeC
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK 127 (182)
..++..+..+...+.+........+.+|+|+
T Consensus 76 -~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 76 -LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred -hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4556666666555544322114466777774
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=60.56 Aligned_cols=57 Identities=14% Similarity=0.019 Sum_probs=42.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~ 71 (182)
.+.+++.|+|-|++||||++|+|.........++.|+....-.+ .+-.+.+.|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCce
Confidence 46789999999999999999999998887755555533322222 3457788999984
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.4e-05 Score=54.81 Aligned_cols=22 Identities=9% Similarity=-0.201 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
||+|+|++|||||||.++|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999854
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.5e-05 Score=57.19 Aligned_cols=95 Identities=13% Similarity=0.183 Sum_probs=56.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC----C----------C-----cc--------ccCCCc--eeeEE----------E
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG----E----------V-----VS--------TIPTIG--FNVET----------V 56 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~----~----------~-----~~--------~~~t~~--~~~~~----------~ 56 (182)
+.--|.++|..|+||||.+.+|... . | .+ ..|-.+ ..... +
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 3345899999999999999887751 0 1 00 111111 00000 1
Q ss_pred EeCCEEEEEEECCCCCCCh-hhhhh-----hCCCCCEEEEEEeCCCcchHHHHHHHHHHH
Q 030122 57 QYNNIKFQVWDLGGQTSIR-PYWRC-----YFPNTEAVIYVVDSSDTDRIQTAKEEFHAI 110 (182)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~-~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 110 (182)
.-+++.++|.||.|..... .+... -.-+.|-+|+|.|++-....+.....|++.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 1156899999999954422 22221 122579999999998766655555555554
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.6e-05 Score=61.11 Aligned_cols=54 Identities=20% Similarity=0.046 Sum_probs=39.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCc--eeeEEEEeCCEEEEEEECCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG--FNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~d~~g~ 71 (182)
.+.|.++|-||+||||.||.|.+.+......|-| -..-++.+ .-.+-+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-SPSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-CCCceecCCCCc
Confidence 6899999999999999999999998777555554 22222222 345678899994
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.3e-06 Score=59.85 Aligned_cols=155 Identities=10% Similarity=0.005 Sum_probs=90.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc------ccCCCceeeEE----------------E-------------E---
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS------TIPTIGFNVET----------------V-------------Q--- 57 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~----------------~-------------~--- 57 (182)
.-++|.-+|..--||||++..+.+-.... +--|+...+.. + +
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 45799999999999999999988732111 11111100000 0 0
Q ss_pred ----e-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc----chHHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q 030122 58 ----Y-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----DRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 58 ----~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 128 (182)
+ --.++.+.|.||++-..+.......-.|++++.+..+.+ .+-+-+.. -++. .=..++++-||+
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM-----~LkhiiilQNKi 189 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM-----KLKHIIILQNKI 189 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh-----hhceEEEEechh
Confidence 0 013678899999876544333322334777777766543 33222221 1121 235678889999
Q ss_pred CCCCCCCHHH-HHHhhc-ccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 129 DLPGALDDAA-VSEALE-LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 129 D~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
|+..+....+ -.+... .....-.+.|++.+||.-..|++-+.++++..+
T Consensus 190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 9986543211 111111 111123467899999999999999999999865
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0001 Score=56.73 Aligned_cols=109 Identities=12% Similarity=0.035 Sum_probs=60.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-----------------------eeeEEEEe-----------CCE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-----------------------FNVETVQY-----------NNI 61 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-----------------------~~~~~~~~-----------~~~ 61 (182)
+-.|+++||.|+||||-+-+|...-... ....++ +....+.- ..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 4469999999999999887776422200 111111 11111100 456
Q ss_pred EEEEEECCCCCCChhh----hhhhCCCC--CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeE-EEEeeCCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPY----WRCYFPNT--EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQDLPGA 133 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~----~~~~~~~~--~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~D~~~~ 133 (182)
.++++||.|...+... ...++..+ .-.-+|++++... +++...+..+ ..+|+ -+++||.|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f------~~~~i~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQF------SLFPIDGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHh------ccCCcceeEEEcccccCc
Confidence 8999999998765442 33333333 3456677765432 2333332332 22222 567799997653
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.7e-05 Score=54.87 Aligned_cols=23 Identities=9% Similarity=-0.104 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.||+++|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00023 Score=53.86 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=37.0
Q ss_pred EEEEEEECCCCCCChhhhhhhCC--------CCCEEEEEEeCCCcchHHHHHHHH-HHHHhccCCCCCeEEEEeeCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFP--------NTEAVIYVVDSSDTDRIQTAKEEF-HAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
....++++.|...-.+....++. ..+++|.|+|+.+......-.... .++ .. .+ ++++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-~~---AD---~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-GY---AD---RILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-Hh---CC---EEEEeccccC
Confidence 45677888887654444433322 247899999986532211111111 122 21 22 8899999998
Q ss_pred CC
Q 030122 132 GA 133 (182)
Q Consensus 132 ~~ 133 (182)
++
T Consensus 164 ~~ 165 (318)
T PRK11537 164 GE 165 (318)
T ss_pred CH
Confidence 63
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=57.74 Aligned_cols=108 Identities=11% Similarity=0.008 Sum_probs=59.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC-----Ccc--c------c-----------CCCceeeEEEE-----------eCCE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE-----VVS--T------I-----------PTIGFNVETVQ-----------YNNI 61 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~-----~~~--~------~-----------~t~~~~~~~~~-----------~~~~ 61 (182)
.-.|+|+|+.|+||||++.+|...- ... . . ...++...... ...+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 3478999999999999998887420 000 0 0 01111111110 1357
Q ss_pred EEEEEECCCCCCChhh-h-----hhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPY-W-----RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~-~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.+.++||+|....... . ..... ....++|++.+. +..++...++.+.. ..+.-+|+||.|...
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 8999999996543221 1 01111 234667777653 23333333333321 246779999999854
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=4e-05 Score=59.76 Aligned_cols=107 Identities=10% Similarity=0.091 Sum_probs=58.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC------Cc-c--ccC---------------CCceeeEEE-----------EeCCEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE------VV-S--TIP---------------TIGFNVETV-----------QYNNIK 62 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~------~~-~--~~~---------------t~~~~~~~~-----------~~~~~~ 62 (182)
-+|+++|+.|+||||++..|.+.. .. . ... ..++..... ...+..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 489999999999999999776421 00 0 000 011111100 014467
Q ss_pred EEEEECCCCCCChh----hhhhhC--CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 63 FQVWDLGGQTSIRP----YWRCYF--PNTEAVIYVVDSSD-TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 63 ~~i~d~~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
+.++||+|...... ....+. ....-.++|+|++- ...+.++...+.. --+--+++||.|...
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~--------~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQG--------HGIHGCIITKVDEAA 340 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcC--------CCCCEEEEEeeeCCC
Confidence 89999999765322 111111 23456788998874 3334444332221 123457778888764
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.7e-05 Score=53.62 Aligned_cols=22 Identities=9% Similarity=-0.177 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
||+++|++|||||||.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998743
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.3e-05 Score=51.32 Aligned_cols=19 Identities=16% Similarity=-0.118 Sum_probs=18.0
Q ss_pred EEEEecCCCChHHHHHHhh
Q 030122 20 GFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~ 38 (182)
|+++|+|||||||+++++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999987
|
... |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00026 Score=52.56 Aligned_cols=92 Identities=24% Similarity=0.233 Sum_probs=60.1
Q ss_pred hhhhhCCCCCEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEE
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
+.+.-..+.|-.++|+.+.+|+- ..-+..++-.. . ..++.-++++||+|+.+...... ...+......++++
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a-e---~~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v 144 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLA-E---AGGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPV 144 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHH-H---HcCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeE
Confidence 33444456788888888887753 33333332222 2 26788888899999997654432 11112224567789
Q ss_pred EEecccCCCCHHHHHHHHHH
Q 030122 156 FKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~ 175 (182)
+.+|+++++|++++.+++..
T Consensus 145 ~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 145 LFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred EEecCcCcccHHHHHHHhcC
Confidence 99999999999998887753
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=57.74 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=59.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC----CCc------c-ccCC-----------CceeeEEE--------------Ee-
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG----EVV------S-TIPT-----------IGFNVETV--------------QY- 58 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~----~~~------~-~~~t-----------~~~~~~~~--------------~~- 58 (182)
.+..|+++|++|+||||.+..|... ... + +.+. .++..... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 3567999999999999999887641 000 0 1110 11111100 00
Q ss_pred CCEEEEEEECCCCCCChhhh------hhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCC-eEEEEeeCCCCC
Q 030122 59 NNIKFQVWDLGGQTSIRPYW------RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGA-VALIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~i~v~nK~D~~ 131 (182)
....+.++||+|........ ......+|.+++|+|++... +.......... .+ ..-+|+||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccCC
Confidence 23478999999976543211 11233678999999986542 22222222211 12 235677888865
Q ss_pred C
Q 030122 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 3
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.4e-05 Score=53.88 Aligned_cols=47 Identities=30% Similarity=0.355 Sum_probs=31.6
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCC-CeEEEEeeCCCCC
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG-AVALIFANKQDLP 131 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~p~i~v~nK~D~~ 131 (182)
...+++|.+|.|+|.+. .++..+.+ +.++... .+ .++.+|+||.|..
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~taer-i~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHH---hCCceEEEEEeeccch
Confidence 34567999999999874 34443333 2333333 34 7999999999965
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00021 Score=44.82 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=49.7
Q ss_pred EEEEec-CCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 20 GFSFFI-DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 20 i~viG~-~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
|+|.|. .|+||||+...+...-.. .+.....++. ..+.+.++|+|+.... .....+..+|.++++.+.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-H
Confidence 567774 699999988876632211 1111122222 2267899999986533 2335677899999999765 4
Q ss_pred chHHHHHHHHH
Q 030122 98 DRIQTAKEEFH 108 (182)
Q Consensus 98 ~s~~~~~~~~~ 108 (182)
.++.....++.
T Consensus 74 ~s~~~~~~~~~ 84 (104)
T cd02042 74 LDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00022 Score=55.22 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=56.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC----CCc------c-ccC-------C----CceeeE-------EEEe------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG----EVV------S-TIP-------T----IGFNVE-------TVQY------ 58 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~----~~~------~-~~~-------t----~~~~~~-------~~~~------ 58 (182)
...+..|+++|..||||||.+-+|... ... + +.| + +++... .+.+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 334568999999999999998887651 100 0 111 0 111111 1111
Q ss_pred ----CCEEEEEEECCCCCCChh-hhh-----hhCCCCCEEEEEEeCCCcchHHHHHHHHHH
Q 030122 59 ----NNIKFQVWDLGGQTSIRP-YWR-----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHA 109 (182)
Q Consensus 59 ----~~~~~~i~d~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~ 109 (182)
..+.+.|+||+|...... +.. .-.-+.|=+++|+|+.-..........|++
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 346899999999765433 211 123368999999998765544444444444
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.001 Score=51.67 Aligned_cols=26 Identities=8% Similarity=-0.238 Sum_probs=22.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhc
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....+=|.|+||..+|||||++||..
T Consensus 14 T~GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 14 TGGDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred cCCceEEEeecCcccCchhHHHHHHH
Confidence 34467799999999999999999997
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00022 Score=47.36 Aligned_cols=104 Identities=12% Similarity=0.116 Sum_probs=59.9
Q ss_pred EEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcch
Q 030122 22 SFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99 (182)
Q Consensus 22 viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s 99 (182)
.-|.+|+|||++.-.+...-......+.-++.. ... -.+.+.++|+|+.. .......+..+|.++++.+.+ ..+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D-~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s 80 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDAD-LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTS 80 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECC-CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhH
Confidence 446789999998776653211000000000000 000 12678999999743 333455678899999999876 444
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 100 IQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
+......++.+.... ...++.++.|+++..
T Consensus 81 ~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 81 ITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 555444444443322 456788999999743
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0002 Score=55.09 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=19.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-.|+++|+.||||||++.++..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998874
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00023 Score=55.91 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=36.7
Q ss_pred CEEEEEEECCCCCCChh-hhhh-----hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRP-YWRC-----YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
++.+.++||+|...... +... -....+.+++|+|.... +++......+... .+ ..-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~---~~-i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEA---LG-LTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhh---CC-CCEEEEeCccCcc
Confidence 46799999999654322 1111 11256788999997543 3333333333221 11 2356779999643
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.5e-05 Score=57.51 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=59.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC-Cc----------c------------ccCCCceeeEEEE----------eCCEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE-VV----------S------------TIPTIGFNVETVQ----------YNNIKF 63 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~-~~----------~------------~~~t~~~~~~~~~----------~~~~~~ 63 (182)
...++++|++||||||++.+|.... .. + +....++...... -.+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468999999999999999987421 00 0 0011112111110 036788
Q ss_pred EEEECCCCCCC-hhh---hhhhCC-----CCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 64 QVWDLGGQTSI-RPY---WRCYFP-----NTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 64 ~i~d~~g~~~~-~~~---~~~~~~-----~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.++||+|.... ... +..++. ...-.++|+|++... ....+...+..+ -+--+++||.|...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~--------~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESL--------NYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCC--------CCCEEEEEcccCCC
Confidence 99999997532 111 122221 234688999987653 344433332111 23467789999764
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00014 Score=60.62 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=61.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc-----c-ccC------------------CCceeeEEE-----------EeCCEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV-----S-TIP------------------TIGFNVETV-----------QYNNIKF 63 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~-----~-~~~------------------t~~~~~~~~-----------~~~~~~~ 63 (182)
-|+|+|+.|+||||.+.+|...-.. . ..- ..++..... ...+..+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 6899999999999999998852210 0 000 000101000 0134578
Q ss_pred EEEECCCCCCChh-h---hhhh--CCCCCEEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 64 QVWDLGGQTSIRP-Y---WRCY--FPNTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 64 ~i~d~~g~~~~~~-~---~~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.++||+|...... + .... ....+-.++|+|.+.. +.+.++...|...... -+--+|+||.|....
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~~ 338 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEATH 338 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCCC
Confidence 9999999543221 1 1111 2245678899998743 4455555544432110 134677889987653
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00038 Score=54.66 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=38.2
Q ss_pred CCEEEEEEECCCCCCChh-hhhh-----hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 59 NNIKFQVWDLGGQTSIRP-YWRC-----YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.++.+.++||+|...... +... .....+.+++|+|.... ++...+...+.... + ..-++.||.|...
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 346799999999654322 1111 12357889999998643 33333333332211 1 3466788998643
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=6.6e-05 Score=53.63 Aligned_cols=22 Identities=9% Similarity=-0.114 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.+|+++|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999874
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=4.5e-05 Score=52.01 Aligned_cols=22 Identities=9% Similarity=-0.256 Sum_probs=17.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999855
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.55 E-value=7.1e-05 Score=43.42 Aligned_cols=21 Identities=10% Similarity=-0.249 Sum_probs=18.8
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|++.|++||||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999998754
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=8.9e-05 Score=52.28 Aligned_cols=24 Identities=13% Similarity=-0.224 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV 42 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~ 42 (182)
.++++||+|||||||++.+.+-..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 689999999999999998875544
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00029 Score=51.98 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=60.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC----Ccc------------------ccCCCceeeEEEE--------------eCCE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE----VVS------------------TIPTIGFNVETVQ--------------YNNI 61 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~----~~~------------------~~~t~~~~~~~~~--------------~~~~ 61 (182)
-+++++|++|+||||++..+...- ... +....++...... ..++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 489999999999999988775421 000 1111121111100 0256
Q ss_pred EEEEEECCCCCCChh-h---hhhhC--CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 62 KFQVWDLGGQTSIRP-Y---WRCYF--PNTEAVIYVVDSSD-TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~-~---~~~~~--~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+.++||+|...... + +..++ ...+-.++|+|++. ........ +.... -.+--+++||.|....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~---~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII---TNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH---HHhCC-----CCCCEEEEEeecCCCC
Confidence 899999999764322 1 11222 24567899998763 33333333 22211 1344678899998753
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.001 Score=43.65 Aligned_cols=24 Identities=4% Similarity=-0.223 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~ 41 (182)
..+++.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >KOG4273 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0015 Score=47.13 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=64.4
Q ss_pred eEEEEEecCCC--ChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 18 VLGFSFFIDNF--GNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 18 ~~i~viG~~~~--GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
..++|.|-.|+ ||.+++.+|....+.. ....-....+ ++.. ..+.+-+.-.. .+.+-+. ....+...++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lpn-~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLPN-AEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccCC-cccccceeeE
Confidence 46889999998 9999999999877755 2111111111 1111 12222222111 1122221 1122345789
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCC-eEEEEeeCCCCCCCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGA-VALIFANKQDLPGAL 134 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~i~v~nK~D~~~~~ 134 (182)
++|||++....+..+..|+...-. ... -.+.++||.|..+++
T Consensus 83 vmvfdlse~s~l~alqdwl~htdi----nsfdillcignkvdrvphh 125 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDI----NSFDILLCIGNKVDRVPHH 125 (418)
T ss_pred EEEEeccchhhhHHHHhhcccccc----ccchhheecccccccccch
Confidence 999999999999999999653211 122 345667999987653
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00053 Score=53.95 Aligned_cols=67 Identities=10% Similarity=0.161 Sum_probs=38.0
Q ss_pred CCEEEEEEECCCCCCChh----hhhhhCC---CCCEEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCC
Q 030122 59 NNIKFQVWDLGGQTSIRP----YWRCYFP---NTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~----~~~~~~~---~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~ 130 (182)
....+.++||+|...... ....++. ...-..+|++.+-. ..+..+...+.. .+ +--++.||.|.
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~-------~~-~~~vI~TKlDe 369 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSR-------LP-LDGLIFTKLDE 369 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCC-------CC-CCEEEEecccc
Confidence 356899999999765431 1222333 23466788887543 334443332221 11 23688999998
Q ss_pred CCC
Q 030122 131 PGA 133 (182)
Q Consensus 131 ~~~ 133 (182)
...
T Consensus 370 t~~ 372 (424)
T PRK05703 370 TSS 372 (424)
T ss_pred ccc
Confidence 543
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=7.5e-05 Score=51.78 Aligned_cols=22 Identities=9% Similarity=-0.161 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+|+++|+|||||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.1e-05 Score=51.80 Aligned_cols=23 Identities=9% Similarity=-0.243 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00014 Score=53.82 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=38.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-------ccCCCceeeEE-EEe-CCEEEEEEECCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPTIGFNVET-VQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t~~~~~~~-~~~-~~~~~~i~d~~g~ 71 (182)
...++.+.|+|-||+|||||+|.+....... ..|.+...... +.+ ..-.+.+.||||-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 3457899999999999999999887643222 12222222222 444 4456888999994
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00011 Score=41.41 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
..++.|+.|||||||+..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988763
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00087 Score=52.03 Aligned_cols=110 Identities=13% Similarity=0.078 Sum_probs=60.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCC-------cc-------------------ccCCCceeeEEEEe-----------C
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEV-------VS-------------------TIPTIGFNVETVQY-----------N 59 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~-------~~-------------------~~~t~~~~~~~~~~-----------~ 59 (182)
...|+++|++|+||||.+.++...-. .. +....++....... .
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 34799999999999999988763100 00 00111111111111 4
Q ss_pred CEEEEEEECCCCCCChhh----hhhhCCC---CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRPY----WRCYFPN---TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~----~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
++.+.++||+|......+ ...++.. ..-.++|+|++... ..+...+..... --+--+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 578999999997543321 1122221 23588999987642 233333333311 124467889999765
Q ss_pred C
Q 030122 133 A 133 (182)
Q Consensus 133 ~ 133 (182)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 3
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00086 Score=51.29 Aligned_cols=21 Identities=10% Similarity=-0.160 Sum_probs=18.3
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
.++.|--|||||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 677799999999999999863
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=47.89 Aligned_cols=26 Identities=8% Similarity=-0.259 Sum_probs=22.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVV 43 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~ 43 (182)
-.++++|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 37899999999999999999865543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00012 Score=50.98 Aligned_cols=23 Identities=13% Similarity=-0.104 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+.+|+++|+|||||||+..++..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999864
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00012 Score=47.48 Aligned_cols=21 Identities=14% Similarity=-0.227 Sum_probs=19.1
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|++.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
|
... |
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00019 Score=48.80 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=31.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
.|.++|.+|||||||++++... ....++....+.+....+.+ |.+|...+
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~-----l~~~g~~V~~iK~~~~~~~~-d~~g~Ds~ 52 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA-----LSARGLRVAVIKHDHHDFDI-DTPGKDSY 52 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-----HHHcCCcEEEEEecCCcccc-cCccchHH
Confidence 5899999999999999999842 22233444455553333333 66664443
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00015 Score=47.82 Aligned_cols=23 Identities=9% Similarity=-0.286 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999887543
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00017 Score=51.23 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=22.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
+.....|+++|++|||||||+++|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 344557889999999999999999754
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00018 Score=49.41 Aligned_cols=22 Identities=9% Similarity=-0.161 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+|++-|++|+||||++++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998853
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00012 Score=52.65 Aligned_cols=23 Identities=9% Similarity=-0.226 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-|+++|++|||||||++-+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999888744
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00013 Score=50.14 Aligned_cols=21 Identities=14% Similarity=-0.156 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|++||||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998875
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00013 Score=47.49 Aligned_cols=21 Identities=10% Similarity=-0.233 Sum_probs=18.9
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999844
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00014 Score=50.84 Aligned_cols=21 Identities=19% Similarity=-0.043 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999974
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00015 Score=48.10 Aligned_cols=21 Identities=14% Similarity=-0.184 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|+++|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00014 Score=50.61 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~ 38 (182)
..|+++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999997
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00014 Score=50.37 Aligned_cols=22 Identities=14% Similarity=-0.094 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|+++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00014 Score=51.94 Aligned_cols=23 Identities=9% Similarity=-0.253 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-++++||+|||||||++-+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999776443
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00019 Score=50.95 Aligned_cols=24 Identities=4% Similarity=-0.274 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..-|++.|++|||||||++.+.+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999853
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00017 Score=51.98 Aligned_cols=22 Identities=14% Similarity=-0.063 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
+||+++|+|||||||+...|..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999875
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00017 Score=50.30 Aligned_cols=23 Identities=17% Similarity=-0.036 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.|+++|++|||||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997543
|
|
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00015 Score=50.68 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+|+++|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >PLN02200 adenylate kinase family protein | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00028 Score=51.06 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...|+++|+|||||||+..++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998874
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00021 Score=47.50 Aligned_cols=22 Identities=14% Similarity=-0.130 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|.|+|+.|||||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0002 Score=51.77 Aligned_cols=25 Identities=8% Similarity=-0.225 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..+|++|+|++|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999988754
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00017 Score=51.36 Aligned_cols=21 Identities=10% Similarity=-0.119 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
||+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00018 Score=49.88 Aligned_cols=20 Identities=10% Similarity=-0.056 Sum_probs=18.5
Q ss_pred EEEEecCCCChHHHHHHhhc
Q 030122 20 GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~ 39 (182)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999875
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00019 Score=49.66 Aligned_cols=22 Identities=14% Similarity=-0.171 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|+++|++||||||+++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999874
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK02496 adk adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00024 Score=49.38 Aligned_cols=22 Identities=9% Similarity=-0.238 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.||+++|+|||||||+++.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00023 Score=49.10 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0002 Score=50.39 Aligned_cols=21 Identities=5% Similarity=-0.331 Sum_probs=19.0
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|++.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00025 Score=46.90 Aligned_cols=21 Identities=10% Similarity=-0.164 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999998874
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00028 Score=48.78 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-|++.|++||||||+.++|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56888999999999999999853
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00029 Score=50.09 Aligned_cols=25 Identities=4% Similarity=-0.245 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
....|++.|++|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998753
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00022 Score=50.29 Aligned_cols=20 Identities=10% Similarity=-0.142 Sum_probs=18.0
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
-.++|||+|||||||++.|.
T Consensus 35 VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred eEEEECCCCcCHHHHHHHHH
Confidence 47999999999999998875
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00013 Score=55.73 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=40.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe--CCEEEEEEECCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY--NNIKFQVWDLGGQ 71 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~d~~g~ 71 (182)
....++-|.|||-||+||||++|.|...+.....|.-|-... -.| --.++-++|.||-
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKV-WQYItLmkrIfLIDcPGv 362 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKV-WQYITLMKRIFLIDCPGV 362 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchH-HHHHHHHhceeEecCCCc
Confidence 456678999999999999999999999888775554431100 000 2246678899994
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00029 Score=44.41 Aligned_cols=20 Identities=10% Similarity=-0.306 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
.++++|++|||||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 68999999999999999875
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0017 Score=51.44 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=68.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCC------------Ccc---ccCCCceeeEE--EEe------------------CCEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE------------VVS---TIPTIGFNVET--VQY------------------NNIKF 63 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~------------~~~---~~~t~~~~~~~--~~~------------------~~~~~ 63 (182)
++.+|....-|||||...|.... |.+ -.+.-++.++. +.. .+..+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 58899999999999999988532 111 00001111111 111 34678
Q ss_pred EEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 64 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
+++|.||+-+|.+..-..++-.|+++.|+|..+.--.+. ...+++.+. .++.-++++||.|..
T Consensus 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~----ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLVMNKMDRA 163 (842)
T ss_pred EeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHH----hhccceEEeehhhHH
Confidence 999999999999988888888999999999866422111 111122222 234446788999953
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00027 Score=46.91 Aligned_cols=25 Identities=12% Similarity=-0.129 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhc
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....+|++-|-||+||||+..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4567999999999999999999984
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0003 Score=49.07 Aligned_cols=23 Identities=9% Similarity=-0.366 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.++++|++||||||+++.+++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999998854
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00025 Score=50.85 Aligned_cols=21 Identities=14% Similarity=-0.301 Sum_probs=18.7
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|++.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK05057 aroK shikimate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00031 Score=48.45 Aligned_cols=23 Identities=13% Similarity=-0.204 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-+|+++|++||||||+.+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 37999999999999999999853
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00031 Score=50.22 Aligned_cols=21 Identities=10% Similarity=-0.197 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+++|+.|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 699999999999999998876
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00034 Score=48.25 Aligned_cols=21 Identities=5% Similarity=-0.206 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+++++|++|+|||||+|-+.+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 799999999999999998876
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=47.76 Aligned_cols=23 Identities=4% Similarity=-0.281 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-|+|.|++||||||+++.++..-
T Consensus 82 lilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhh
Confidence 59999999999999999887543
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0003 Score=49.71 Aligned_cols=22 Identities=14% Similarity=-0.215 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|+++|++|||||||++.+.+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999864
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00032 Score=48.97 Aligned_cols=23 Identities=13% Similarity=-0.156 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-|+++||+|||||||+++|+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45999999999999999999864
|
|
| >PRK00279 adk adenylate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00033 Score=50.03 Aligned_cols=21 Identities=5% Similarity=-0.222 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+|+|+|||||||+.+.|..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998874
|
|
| >PRK14529 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00034 Score=50.18 Aligned_cols=21 Identities=10% Similarity=-0.102 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|+|||||||+.++|..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988764
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00039 Score=45.33 Aligned_cols=23 Identities=13% Similarity=-0.178 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-+++.|++|+|||++++++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998644
|
|
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0005 Score=46.64 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=34.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (182)
-+.++|..|||||||+.++.. ....-|+....+...+-. --.|++|.+.++
T Consensus 4 Il~ivG~k~SGKTTLie~lv~-----~L~~~G~rVa~iKH~hh~-~~~D~~GkDs~r 54 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEKLVR-----KLKARGYRVATVKHAHHD-FDLDKPGKDTYR 54 (161)
T ss_pred EEEEEecCCCChhhHHHHHHH-----HHHhCCcEEEEEEecCCC-CCCCCCCCccch
Confidence 478999999999999999972 222334555556552222 335788877764
|
|
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00026 Score=48.20 Aligned_cols=22 Identities=9% Similarity=-0.152 Sum_probs=19.0
Q ss_pred EEEEecCCCChHHHHHHhhcCC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~ 41 (182)
|+++|++||||||+.+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999987543
|
This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. |
| >PRK14528 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00038 Score=48.61 Aligned_cols=21 Identities=10% Similarity=-0.257 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|+|||||||+.+.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999863
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00033 Score=49.40 Aligned_cols=23 Identities=9% Similarity=-0.242 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-|++.|++||||||+++.+...-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999877543
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00034 Score=52.99 Aligned_cols=23 Identities=9% Similarity=-0.188 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-++++||+||||||+++-+.+-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988743
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0005 Score=47.29 Aligned_cols=23 Identities=13% Similarity=-0.146 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-+.|+|++|||||||++++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 46899999999999999999844
|
|
| >PLN02459 probable adenylate kinase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00052 Score=50.21 Aligned_cols=24 Identities=17% Similarity=-0.018 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
..++|+++|+|||||||+...+..
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~ 51 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSK 51 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999998875
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.018 Score=39.48 Aligned_cols=65 Identities=8% Similarity=-0.020 Sum_probs=43.2
Q ss_pred EEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.+.++|+|+.... .....+..+|.+|++++.+. .++..+..++..+... ......+++|+.+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc
Confidence 7999999985433 23445678999999998763 4455555554444332 2345778999998754
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00051 Score=45.11 Aligned_cols=32 Identities=19% Similarity=-0.022 Sum_probs=24.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG 50 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~ 50 (182)
.|++.|+.|+|||||++.+...-... .+||..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~ 58 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFT 58 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCee
Confidence 68999999999999999998654322 566643
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00038 Score=50.76 Aligned_cols=21 Identities=10% Similarity=-0.206 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-++++||.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999987
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00053 Score=47.25 Aligned_cols=26 Identities=8% Similarity=-0.201 Sum_probs=21.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.....|++.|++||||||+.+.|...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44568888899999999999999754
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00045 Score=47.77 Aligned_cols=20 Identities=10% Similarity=-0.147 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
+++++|+.|||||||++.+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 79999999999999999875
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 182 | ||||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 2e-48 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 2e-47 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 2e-46 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 1e-45 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 1e-45 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 1e-45 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 2e-45 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 2e-45 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 3e-45 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 3e-45 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 7e-45 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 2e-44 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 2e-44 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 2e-43 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 4e-43 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 5e-43 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 5e-42 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 1e-40 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 2e-40 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 2e-39 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 3e-39 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 3e-39 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 4e-39 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 2e-38 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 3e-38 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 3e-38 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 3e-38 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 3e-38 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 4e-34 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 8e-34 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 1e-33 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 1e-33 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 4e-33 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 6e-33 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 6e-33 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 7e-33 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-32 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 3e-31 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 3e-29 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 3e-29 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 5e-29 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 4e-28 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 9e-23 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 5e-20 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-19 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 4e-19 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 1e-17 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 4e-14 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 8e-14 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 2e-11 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 3e-11 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 6e-11 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 2e-10 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 4e-05 | ||
| 4fid_A | 340 | Crystal Structure Of A Heterotrimeric G-Protein Sub | 5e-05 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 4e-04 | ||
| 1cjk_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 4e-04 | ||
| 1cul_C | 380 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 5e-04 | ||
| 3sn6_A | 380 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 5e-04 | ||
| 1azs_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 5e-04 | ||
| 1cs4_C | 394 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 5e-04 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 9e-04 |
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402 | Back alignment and structure |
|
| >pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380 | Back alignment and structure |
|
| >pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380 | Back alignment and structure |
|
| >pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402 | Back alignment and structure |
|
| >pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 264 bits (676), Expect = 1e-91
Identities = 46/145 (31%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 36 RLQMGEV-VSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94
+ G+ IPT+GFN+ + N+ ++WD+GGQ R W Y A++Y+VD+
Sbjct: 41 VIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA 100
Query: 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA 154
+D ++I+ +K E H +L++ +L+G L+ NK+DLPGALD+ + E + L I++R+
Sbjct: 101 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREIC 160
Query: 155 IFKTCAIKGEGLFEGMDWLSNTLKS 179
+ + + + + WL KS
Sbjct: 161 CYSISCKEKDNIDITLQWLIQHSKS 185
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 263 bits (674), Expect = 2e-91
Identities = 93/144 (64%), Positives = 114/144 (79%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGG TSIRPYWRCY+ NT+AVIYVVDS
Sbjct: 26 RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC 85
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DRI +K E A+LEEEEL+ A+ ++FANKQD+ A+ + ++ +L L +K+R+W I
Sbjct: 86 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQI 145
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
FKT A KG GL E M+WL TLKS
Sbjct: 146 FKTSATKGTGLDEAMEWLVETLKS 169
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 268 bits (687), Expect = 3e-91
Identities = 84/179 (46%), Positives = 117/179 (65%)
Query: 1 MPAKPQSSVTSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNN 60
+ +D G +L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 149 AQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 208
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
I F VWD+GGQ IRP WR YF NT+ +I+VVDS+D +R+ A+EE +L E+EL+ AV
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 268
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L+FANKQDLP A++ A +++ L LH +++R W I TCA G+GL+EG+DWLSN L++
Sbjct: 269 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 6e-91
Identities = 82/144 (56%), Positives = 113/144 (78%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR YF NT+ +I+VVDS+
Sbjct: 19 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 78
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D +R+ A+EE +L E+EL+ AV L+FANKQDLP A++ A +++ L LH +++R W I
Sbjct: 79 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 138
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
TCA G+GL+EG+DWLSN L++
Sbjct: 139 QATCATSGDGLYEGLDWLSNQLRN 162
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 1e-90
Identities = 84/146 (57%), Positives = 112/146 (76%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
RL +G+VV+T+PT+G N+ET+QY NI F+VWDLGGQT +RPYWRCYF +T+AVIYVVDS+
Sbjct: 41 RLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDST 100
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DR+ AK E +A+L+E+EL+ ++ LIFANKQDLP A +A ++E L + I NR W I
Sbjct: 101 DRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTI 160
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKSGG 181
K+ + G+GL EGMDWL L+ G
Sbjct: 161 VKSSSKTGDGLVEGMDWLVERLREQG 186
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 1e-90
Identities = 63/144 (43%), Positives = 90/144 (62%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L ++ PT GFN+++VQ K VWD+GGQ IRPYWR YF NT+ +IYV+DS+
Sbjct: 35 QLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSA 94
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D R + +E +LEEE+L LIFANKQDL A + ++E L LH I++R W I
Sbjct: 95 DRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQI 154
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
A+ GEG+ +GM+W+ + +
Sbjct: 155 QSCSALTGEGVQDGMNWVCKNVNA 178
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 259 bits (665), Expect = 7e-90
Identities = 67/144 (46%), Positives = 95/144 (65%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+ +V + PT+GFN++T+++ K +WD+GGQ S+R YWR YF +T+ +I+VVDS+
Sbjct: 37 KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 96
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D R+Q + E ++L EE L GA LIFANKQDLPGAL A+ EALEL I++ W I
Sbjct: 97 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRI 156
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
A+ GE L G+DWL + + S
Sbjct: 157 QGCSAVTGEDLLPGIDWLLDDISS 180
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 259 bits (664), Expect = 9e-90
Identities = 69/144 (47%), Positives = 95/144 (65%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+ M EVV T PTIG NVE + NN +F +WD+GGQ S+R W Y+ NTE VI VVDS+
Sbjct: 35 QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST 94
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D +RI +EE + +L E+L+ A LIFANKQD+ + A +S+ L+L IK+ QW I
Sbjct: 95 DRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI 154
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
CA+ GEGL +G++W+ + LK
Sbjct: 155 QACCALTGEGLCQGLEWMMSRLKI 178
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 2e-89
Identities = 68/142 (47%), Positives = 94/142 (66%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+ M EVV T PTIG NVE + NN +F +WD+GGQ S+R W Y+ NTE VI VVDS+
Sbjct: 40 QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST 99
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D +RI +EE + +L E+L+ A LIFANKQD+ + A +S+ L+L IK+ QW I
Sbjct: 100 DRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI 159
Query: 156 FKTCAIKGEGLFEGMDWLSNTL 177
CA+ GEGL +G++W+ + L
Sbjct: 160 QACCALTGEGLCQGLEWMMSRL 181
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 3e-88
Identities = 89/144 (61%), Positives = 114/144 (79%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
RLQ+GEVV+T PTIGFNVET+ Y N+K VWDLGGQTSIRPYWRCY+ +T AVI+VVDS+
Sbjct: 37 RLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDST 96
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DR+ TA +E H +L+EEEL+ A L+FANKQD PGAL + VS+ L L ++K+R W+I
Sbjct: 97 DKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 156
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
+ AIKGEG+ EG+DWL + +K
Sbjct: 157 VASSAIKGEGITEGLDWLIDVIKE 180
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 4e-88
Identities = 75/144 (52%), Positives = 110/144 (76%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR YF NT+ +I+VVDS+
Sbjct: 48 KLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 107
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D +R+Q + +E +L+E+EL+ AV L+FANKQD+P A+ + +++ L L +++R W +
Sbjct: 108 DRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYV 167
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
TCA +G GL++G+DWLS+ L
Sbjct: 168 QATCATQGTGLYDGLDWLSHELSK 191
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 254 bits (652), Expect = 8e-88
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
L+ + + PT E + NIKF +DLGG R W+ YFP ++++VD++
Sbjct: 42 MLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA 101
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN----- 150
D +R A+ E A+ ELK +I NK D P A+ +A + AL L
Sbjct: 102 DPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIE 161
Query: 151 --RQWAIFKTCAIKGEGLFEGMDWLSNTL 177
R +F + G E WLS +
Sbjct: 162 GQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 5e-87
Identities = 57/148 (38%), Positives = 88/148 (59%), Gaps = 4/148 (2%)
Query: 36 RLQMGEV--VSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
+L+ + +PTIGF++E + +++ F V+D+ GQ R W Y+ +A+I+V+D
Sbjct: 40 KLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVID 99
Query: 94 SSDTDRIQTAKEEFHAILEEEELKGAVA--LIFANKQDLPGALDDAAVSEALELHKIKNR 151
SSD R+ AKEE +L ++K L FANK DL A+ VS+ L L IK++
Sbjct: 100 SSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDK 159
Query: 152 QWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
W I + AIKGEGL EG+DWL + +++
Sbjct: 160 PWHICASDAIKGEGLQEGVDWLQDQIQT 187
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 246 bits (629), Expect = 3e-84
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
L+ + +PT+ E + + F +DLGG R W+ Y P ++++VD +
Sbjct: 44 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA 103
Query: 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL------------ 143
D +R+ +KEE +++ +E + LI NK D P A+ + + E
Sbjct: 104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163
Query: 144 ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
L ++ R +F +K +G EG W++ +
Sbjct: 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-58
Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 9/151 (5%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNN---IKFQVWDLGGQTSIRP-YWRCYFPNTEAVIYV 91
RL G+ T +I + + NN + DL G S+R + + AV++V
Sbjct: 26 RLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV 85
Query: 92 VDSSDTDR-IQTAKEEFHAILEEEEL--KGAVALIFANKQDLPGALDDAAVSEALELHKI 148
VDS+ R ++ E + +L + LI NKQD+ A + + LE
Sbjct: 86 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145
Query: 149 KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
R + L K
Sbjct: 146 TLRVTRSAAPSTLDSSS--TAPAQLGKKGKE 174
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 8e-54
Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 15/151 (9%)
Query: 39 MGEVVSTIPTIGFN-----VETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
+ T+ F+ + V+ +F ++ + GQ + + +++V D
Sbjct: 47 VSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVAD 106
Query: 94 SSDTDRIQTAKEEFHAILEE-----EELKGAVALIFANKQDLPGALDDAAVSEALELHKI 148
S+ +R++ E + E L +I NK+DLP AL V ++
Sbjct: 107 SAP-NRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE-- 163
Query: 149 KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++ + + A +G+G+FE + +S + +
Sbjct: 164 --GKFPVLEAVATEGKGVFETLKEVSRLVLA 192
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 6e-50
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 11/149 (7%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN----TEAVIYV 91
L V T+ + + Y+ + D G +R Y + +I++
Sbjct: 31 LLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 89
Query: 92 VDSS-DTDRIQTAKEEFHAILEEEELKGAVA---LIFANKQDLPGALDDAAVSEAL--EL 145
VDS+ D ++ T E IL E LI NK +L A + + +AL E+
Sbjct: 90 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEI 149
Query: 146 HKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174
K+ R+ K + L
Sbjct: 150 QKVIERRKKSLNEVERKINEEDYAENTLD 178
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 7e-49
Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 11/127 (8%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN----TEAVIYV 91
L V T+ + + Y+ + D G +R Y + +I++
Sbjct: 67 LLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 125
Query: 92 VDSS-DTDRIQTAKEEFHAILEEEELKGAVA---LIFANKQDLPGALDDAAVSEAL--EL 145
VDS+ D ++ T E IL E LI NK +L A + + +AL E+
Sbjct: 126 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEI 185
Query: 146 HKIKNRQ 152
K+ R+
Sbjct: 186 QKVIERR 192
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 2e-43
Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 5/118 (4%)
Query: 66 WDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG----AVA 121
G + S+ P + + IYV ++ R + E H + + G +
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 122 LIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++ Q + ++ L L+ + N W + T A G G++W+ ++S
Sbjct: 167 VLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVES 223
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 131 bits (329), Expect = 1e-37
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Query: 67 DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG----AVAL 122
G + S+ P + + IYV ++ R + E H + + G + +
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 123 IFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
+ Q + ++ L L+ + N W + T A G G++W+ ++S
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVES 308
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 7e-31
Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 12/133 (9%)
Query: 35 DRLQMGEVVSTIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRPYW---RCYFPNTEAVIY 90
++ E + T + + + + FQ+WD GQ F T A+IY
Sbjct: 42 HKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIY 101
Query: 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN 150
V+D+ D + + +F +K D +S+ ++ ++
Sbjct: 102 VIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG--------LSDDHKIETQRD 153
Query: 151 RQWAIFKTCAIKG 163
A G
Sbjct: 154 IHQRANDDLADAG 166
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 96.6 bits (240), Expect = 1e-24
Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 16/157 (10%)
Query: 35 DRLQMGEVVSTIPTIGFNVETVQYN-NIKFQVWDLGGQTS-----IRPYWRCYFPNTEAV 88
+ TI +++ N+ +WD GGQ F + +
Sbjct: 25 SNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVL 84
Query: 89 IYVVDSSDTDRIQTAKEEFHAILEEEEL--KGAVALIFANKQDLPGALDDAAVSEAL--- 143
I+V D T+ ++ E F L++ A + +K DL + + +
Sbjct: 85 IHVFDVESTEVLK-DIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKN 143
Query: 144 ---ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
+ F T I E L++ + +L
Sbjct: 144 LSETSSEFGFPNLIGFPTS-IWDESLYKAWSQIVCSL 179
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 4e-13
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 35 DRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW---RCYFPNTEAVIYV 91
+Q + + T ++E I V +L GQ + F + A++YV
Sbjct: 21 HNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79
Query: 92 VDSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDL 130
+DS D A I+E + + +K D
Sbjct: 80 IDSQDEYI--NAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 2e-08
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 42 VVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD--- 98
+ + T G Q + + F ++D+GGQ R W F + A+I+VV SS +
Sbjct: 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257
Query: 99 -------RIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
R+Q A F +I L+ ++F NKQDL
Sbjct: 258 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 2e-08
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD----- 98
+ + T G + ++ F+++D+GGQ S R W F A+I+ V SD D
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 99 -----RIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
R+ + + F +I + ++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 5e-08
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 8/132 (6%)
Query: 46 IPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
PTIG F + V N +KF++WD GQ Y+ N +A + V D +
Sbjct: 33 EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFI 92
Query: 102 TAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161
A+ L E+ K + + NK D + V+ + + F+T A
Sbjct: 93 KARHWVKE-LHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAK 151
Query: 162 KGEG---LFEGM 170
GE +F G+
Sbjct: 152 TGENVNDVFLGI 163
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 6e-08
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD----- 98
+ PT G + + N+ F++ D+GGQ S R W F + +++++V SS+ D
Sbjct: 184 ARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLME 243
Query: 99 -----RIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
R+ + F I+ ++F NK DL
Sbjct: 244 DRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 1e-07
Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 21 FSFFIDNFGNLC-------DTDRLQMGEVVSTIPTIGFNVETV-QYNNIKFQVWDLGGQT 72
+ ++N L D L + + I F+ + + ++++D+GGQ
Sbjct: 135 TKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQR 194
Query: 73 SIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEELKGAVAL 122
+ R W F AVI+ S+ +R+ KE F +L++ + +
Sbjct: 195 NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 254
Query: 123 IFANKQDL 130
+F NK D+
Sbjct: 255 LFLNKFDI 262
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-07
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD----- 98
+PT G ++ F++ D+GGQ S R W F N +++++V S+ D
Sbjct: 150 VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209
Query: 99 -----RIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
R++ +K F I+ + + ++F NK+DL
Sbjct: 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 6e-07
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 28/148 (18%)
Query: 48 TIGFNVETVQYNNIKFQVWDLGG--------------QTSIRPYWRCYFPNTEAVIYVVD 93
T G NV + ++Q+ D G Q + + +IY+ D
Sbjct: 201 TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGN-----LIIYIFD 255
Query: 94 SSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNR 151
S+ EE + EE E K L+ NK D+ + + + ++ +
Sbjct: 256 PSEHCG--FPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLN-- 311
Query: 152 QWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
K A+KG G+ + + TL+
Sbjct: 312 ---PIKISALKGTGIDLVKEEIIKTLRP 336
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 18/145 (12%), Positives = 40/145 (27%), Gaps = 23/145 (15%)
Query: 41 EVVSTIPTIG--FNVETVQYNN-----IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
++ T+G +Q + + VWD G+ + + V D
Sbjct: 29 DLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYD 88
Query: 94 SSDTDRIQTAKEEFHAI---LEEEELKG--AVALIFANKQDLPGALDDAAVS-----EAL 143
+ + E A+ L + + + ++ D+ A E L
Sbjct: 89 ------LSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELL 142
Query: 144 ELHKIKNRQWAIFKTCAIKGEGLFE 168
+ F + + L +
Sbjct: 143 NKRGFPAIRDYHFVNATEESDALAK 167
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 8e-05
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 18/92 (19%)
Query: 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK 147
V+ +D++ I E+ +K ++ NK DL ++ + +
Sbjct: 307 VLLTIDAATGW-----TTGDQEIYEQ--VKHRPLILVMNKIDLVEKQLITSLEYPENITQ 359
Query: 148 IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
I T A + +G+ D L +
Sbjct: 360 -------IVHTAAAQKQGI----DSLETAILE 380
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 1e-04
Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 11/127 (8%)
Query: 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
P I + F WD GGQ + + + + + ++DS
Sbjct: 82 QAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWL 141
Query: 105 EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164
+ ++ NK D + + + + + G+
Sbjct: 142 RHIEK-----YGGKSPVIVVMNKIDEN---PSYNIEQKKINERFPAIENRFHRISCKNGD 193
Query: 165 G---LFE 168
G + +
Sbjct: 194 GVESIAK 200
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 1e-04
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEE-----EELKGAVALIFANKQDLPGALDDAAV 139
T ++YV+D++ + + + + +E L +L+ NK DL A+
Sbjct: 236 TRVLLYVLDAA-DEPL----KTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKAL 290
Query: 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++AL A+ A+ G GL + L ++S
Sbjct: 291 ADALA-----REGLAVLPVSALTGAGLPALKEALHALVRS 325
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 1e-04
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK 147
V++V+D+S EE ILE +K L+ NK D+ +++ + L +
Sbjct: 327 VLFVLDAS-----SPLDEEDRKILER--IKNKRYLVVINKVDVVEKINEEEIKNKLGTDR 379
Query: 148 IKNRQWAIFKTCAIKGEGL 166
+ K A+KGEGL
Sbjct: 380 ------HMVKISALKGEGL 392
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
TIG F V + IK Q+WD GQ S R R Y+ + V D +
Sbjct: 49 VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR--- 105
Query: 100 IQTAKEEFHAI---LEEEEL---KGAVALIFANKQDL 130
+E F+ + LE+ V ++ NK DL
Sbjct: 106 ----RETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 138
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 2e-04
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEE-----EELKGAVALIFANKQDLPGALDDAAV 139
T +++V+D S + + +++ I +E L +I ANK D+P A ++
Sbjct: 237 TRVIVHVIDMSGLEG-RDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLE- 294
Query: 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
+ + +F A+ EGL E + ++N L++
Sbjct: 295 ----AFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 46 IPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD--SSDT-D 98
+ T+G + N IKF VWD GQ Y+ + I + D S T
Sbjct: 45 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYK 104
Query: 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN 150
+ + + E ++ NK D+ D ++++ H+ KN
Sbjct: 105 NVPNWHRDLVRVCE-----NIPIVLCGNKVDIK---DRKVKAKSIVFHRKKN 148
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 34/109 (31%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 46 IPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
PTIG F +TVQY N KF +WD G R Y+ + A I V D + +
Sbjct: 36 NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFS 95
Query: 102 TAK---EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS--EALEL 145
T K E L + V I NK DL D V +A +
Sbjct: 96 TLKNWVRE----LRQHGPPSIVVAIAGNKCDLT---DVREVMERDAKDY 137
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 39.4 bits (93), Expect = 3e-04
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 17/94 (18%)
Query: 88 VIYVVDSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALDDAAVSEALEL 145
++Y++D ++ + E A L ANK D D AL
Sbjct: 316 ILYLLDLG-----TERLDDELTEIRELKAAHPAAKFLTVANKLDRAANAD------ALIR 364
Query: 146 HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
+ A+ G+G+ D L +
Sbjct: 365 AIADGTGTEVIGISALNGDGI----DTLKQHMGD 394
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 3e-04
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 17/97 (17%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
+ TIG F ++Q + IK Q+WD GQ R Y+ + V D +
Sbjct: 33 ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK--- 89
Query: 100 IQTAKEEFHAI------LEEEELKGAVALIFANKQDL 130
+ + L + V ++ NK DL
Sbjct: 90 ----HLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 4e-04
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 46 IPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
TIG F +T+ + ++ Q+WD G R Y ++ + V D ++ + Q
Sbjct: 46 QATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQ 105
Query: 102 TAK---EEFHAILEEEELKGAVALIFANKQDLP 131
++ + E + ++ NK DL
Sbjct: 106 QTTKWIDD----VRTERGSDVIIMLVGNKTDLA 134
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 38.4 bits (90), Expect = 5e-04
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 17/97 (17%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
+ TIG F+ TV +K Q+WD G R Y+ + V D +
Sbjct: 53 DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK--- 109
Query: 100 IQTAKEEFHAI------LEEEELKGAVALIFANKQDL 130
+ + + L + V ++ NK DL
Sbjct: 110 ----HQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 37.9 bits (89), Expect = 5e-04
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 44 STIPTIG--FNVETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT- 97
TIG F + + N+ Q+WD+GGQT Y + V+ V D ++
Sbjct: 34 QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQ 93
Query: 98 --DRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
+ ++ + EE E + VAL+ NK DL
Sbjct: 94 SFENLEDWYTVVKKVSEESETQPLVALV-GNKIDLE 128
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 5e-04
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 22/114 (19%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D
Sbjct: 44 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD--- 100
Query: 100 IQTAKEEFHAI------LEEEELKGAVALIFANKQDLPGALDDAAVS--EALEL 145
+E F+ + ++ + L+ NK DL V A E
Sbjct: 101 ----QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT---TKKVVDYTTAKEF 147
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 6e-04
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
+ PTIG F +TV N KF +WD GQ Y+ + A + V D + D
Sbjct: 51 NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS 110
Query: 100 IQTAK---EEFHAILEEEELKGAVALIFANKQDL 130
T K +E L+E + V I NK DL
Sbjct: 111 FYTLKKWVKE----LKEHGPENIVMAIAGNKCDL 140
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 37.5 bits (88), Expect = 7e-04
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
+ TIG F +T+ + ++ Q+WD GQ R Y ++ + V D ++T+
Sbjct: 42 TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS 101
Query: 100 IQTAK---EEFHAILEEEELKGAVALIFANKQDL 130
++ + E + ++ NK DL
Sbjct: 102 FHQTSKWIDD----VRTERGSDVIIMLVGNKTDL 131
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 37.8 bits (88), Expect = 7e-04
Identities = 23/97 (23%), Positives = 31/97 (31%), Gaps = 17/97 (17%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
+ TIG F T++ IK Q+WD GQ R Y+ + V D S
Sbjct: 41 DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK--- 97
Query: 100 IQTAKEEFHAI------LEEEELKGAVALIFANKQDL 130
+ L E + NK DL
Sbjct: 98 ----SSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 8e-04
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 22/114 (19%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
+ + T+G F V+T+ N+ IK Q+WD G R Y+ I + D ++
Sbjct: 36 AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN--- 92
Query: 100 IQTAKEEFHAI---LEEEEL---KGAVALIFANKQDLPGALDDAAVS--EALEL 145
+E F+A+ + + A L+ NK D+ D+ VS +L
Sbjct: 93 ----EESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME---DERVVSSERGRQL 139
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 8e-04
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
+ T+G F ++T+ + Q+WD GQ R + YF + V+ + D
Sbjct: 56 NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDV----- 110
Query: 100 IQTAKEEFHAI------LEEEELKGAVALIFANKQDLP 131
T ++ F I +E+ + ++ NK D+
Sbjct: 111 --TCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 37.1 bits (87), Expect = 8e-04
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F ++TV N +K Q+WD GQ R Y+ +I V D +D
Sbjct: 31 SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD--- 87
Query: 100 IQTAKEEFHAI------LEEEELKGAVALIFANKQDLP 131
+ F I + E A L+ NK D+
Sbjct: 88 ----ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 9e-04
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 22/114 (19%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D
Sbjct: 61 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD--- 117
Query: 100 IQTAKEEFHAI------LEEEELKGAVALIFANKQDLPGALDDAAVS--EALEL 145
+E F+ + ++ + L+ NK DL V A E
Sbjct: 118 ----QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT---TKKVVDYTTAKEF 164
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 37.1 bits (87), Expect = 9e-04
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
I T+G F + + + +WD GQ Y+ ++ I V D +D D
Sbjct: 34 KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS 93
Query: 100 IQTAK---EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS--EALEL 145
Q K +E L + I NK DL + VS EA
Sbjct: 94 FQKVKNWVKE----LRKMLGNEICLCIVGNKIDLE---KERHVSIQEAESY 137
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 182 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 100.0 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 100.0 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 100.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 100.0 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 100.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 100.0 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 100.0 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 100.0 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 100.0 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 100.0 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 100.0 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 100.0 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 100.0 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 100.0 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 100.0 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 100.0 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 100.0 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 100.0 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 100.0 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 100.0 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 100.0 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 100.0 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 100.0 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 100.0 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 100.0 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 100.0 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 100.0 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 100.0 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 100.0 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 100.0 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 100.0 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 100.0 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 100.0 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 100.0 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 100.0 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 100.0 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 100.0 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 100.0 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 100.0 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 100.0 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 100.0 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 100.0 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 100.0 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.98 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.98 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.98 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.98 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.98 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.98 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.98 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.98 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.98 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.98 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.98 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.98 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.98 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.98 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.98 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.98 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.97 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.97 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.97 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.97 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.97 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.97 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.97 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.97 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.97 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.97 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.97 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.97 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.97 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.97 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.97 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.97 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.97 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.97 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.97 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.96 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.93 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.96 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.96 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.96 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.95 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.95 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.95 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.95 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.95 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.95 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.95 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.95 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.95 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.95 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.95 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.94 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.94 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.94 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.94 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.93 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.93 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.93 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.93 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.93 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.93 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.93 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.92 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.92 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.92 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.92 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.92 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.92 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.91 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.91 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.91 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.91 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.91 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.9 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.9 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.9 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.9 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.9 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.89 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.89 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.89 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.89 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.89 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.89 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.88 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.88 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.88 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.88 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.88 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.88 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.87 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.87 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.87 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.87 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.87 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.87 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.87 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.87 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.87 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.86 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.86 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.86 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.86 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.85 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.84 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.84 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.84 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.83 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.83 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.83 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.82 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.81 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.8 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.8 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.8 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.79 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.79 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.78 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.78 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.77 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.75 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.74 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.73 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.72 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.72 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.71 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.7 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.69 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.68 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.67 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.67 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.66 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.66 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.65 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.63 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.61 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.6 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.59 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.55 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.55 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.53 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.5 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.43 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.38 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.35 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.13 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.02 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.0 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.96 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.85 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.85 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.79 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.77 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.67 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.65 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.63 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.62 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.42 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.37 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.3 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 98.22 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.18 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.18 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.09 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.02 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.91 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.73 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.68 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.62 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.58 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.57 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.57 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.57 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.56 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.54 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 97.53 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.5 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.49 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.49 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.48 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.47 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.46 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 97.46 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.43 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.43 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.42 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.41 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.41 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.41 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.41 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.4 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.4 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.38 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.37 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.36 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.35 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.35 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.34 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.34 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.33 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.31 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.31 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.29 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.28 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.28 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.28 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.27 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.27 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.26 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.25 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.24 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.24 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.23 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.23 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.23 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.22 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.22 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.22 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.22 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.2 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.2 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.2 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.2 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.2 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.19 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.19 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.18 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.18 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.17 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.17 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.16 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.16 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.16 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.15 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.15 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.15 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.15 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.15 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.15 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.14 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.14 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.14 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.14 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.14 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.13 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.13 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.13 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.12 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.11 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 97.1 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 97.1 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.09 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.09 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.09 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.09 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.09 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 97.08 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.08 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.08 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.07 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.07 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 97.07 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.07 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.07 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.06 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.06 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.06 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.06 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.06 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.05 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.05 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.04 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.04 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.03 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.03 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.03 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.02 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.01 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.01 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.0 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.0 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 97.0 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.99 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 96.99 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.99 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.99 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.99 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.97 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.97 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.97 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.97 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.96 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.93 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.93 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.93 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.92 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.92 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.92 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 96.92 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.9 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.9 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.89 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.88 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.87 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.86 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.86 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.86 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.84 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.83 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.83 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.83 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.82 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.82 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.82 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.81 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.81 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.81 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.81 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.8 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.8 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.79 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.79 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.79 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.79 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.79 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.78 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.77 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 96.77 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.76 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.75 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.75 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.73 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.73 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.73 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.71 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.71 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.7 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.67 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.67 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.66 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.65 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.65 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.61 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.61 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.59 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.58 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.57 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.56 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.53 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.53 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.52 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.51 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.47 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.47 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.47 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.46 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.46 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.46 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.46 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.45 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.43 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.41 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.41 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.41 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.4 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.4 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 96.39 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.38 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.36 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.35 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.33 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.32 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.32 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.29 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.28 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.27 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.27 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.27 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.26 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.26 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.25 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.2 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.2 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.18 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.17 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.17 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 96.16 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.14 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.14 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.13 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.13 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.12 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.12 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.12 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.11 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 96.11 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.09 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.08 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.06 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.06 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.06 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.04 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.04 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.04 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.04 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.02 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 96.01 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.01 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.99 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.97 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.97 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.96 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.96 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.95 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.93 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.93 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.93 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.92 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.92 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.91 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.9 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 95.89 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 95.87 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 95.87 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.86 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.86 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.85 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 95.82 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 95.81 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 95.8 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 95.79 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=227.79 Aligned_cols=163 Identities=17% Similarity=0.205 Sum_probs=123.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
.+|.+++||+++|++|||||||+++|+++.|.. +.||++.+... +.. ..+.+.+|||+|+++|+.+++.|+++++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 446678999999999999999999999999988 89999855443 344 5688999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||++++++|+.+..|+..+.... ..++|++||+||+|+.+.+. .++.. .+ ++..++.|++|||++|.
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~-~~----a~~~~~~~~e~SAktg~ 161 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGE-RK----AKELNVMFIETSAKAGY 161 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEEEBTTTTB
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHh-hH----HHHhCCeeEEEeCCCCc
Confidence 9999999999999999999999987654 36899999999999976432 22221 11 12234569999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
||+++|++|++.+...
T Consensus 162 nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 162 NVKQLFRRVAAALPGM 177 (216)
T ss_dssp SHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987643
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=215.86 Aligned_cols=180 Identities=32% Similarity=0.532 Sum_probs=145.3
Q ss_pred CCCCCCccccCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhh
Q 030122 1 MPAKPQSSVTSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 78 (182)
|.+.++.+....++....||+++|++|||||||+++|+++.+.. +.+|.++....+....+.+.+|||+|+++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (199)
T 4bas_A 1 MGSSHHHHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLW 80 (199)
T ss_dssp ---------------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGG
T ss_pred CCccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHH
Confidence 44455555666778888999999999999999999999998876 4899998888888899999999999999999999
Q ss_pred hhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCC-------CCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CC
Q 030122 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL-------KGAVALIFANKQDLPGALDDAAVSEALELHKI-KN 150 (182)
Q Consensus 79 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~ 150 (182)
..+++++|++|+|||++++++|+.+..|+..++..... .++|+++|+||+|+......+++.+.+..... +.
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGD 160 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccC
Confidence 99999999999999999999999999999988765322 28999999999999988777778777766554 56
Q ss_pred CceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 151 RQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
..++++++||++|.|++++|++|.+.+.+.
T Consensus 161 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 161 HPFVIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CeeEEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 778999999999999999999999988643
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-37 Score=207.44 Aligned_cols=163 Identities=52% Similarity=0.948 Sum_probs=145.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
+||+++|++|+|||||++++.++.+....||.++....+.+.+..+.+||+||+++++.++..+++++|++++|||++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999998887788899988888888889999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
++|+.+..|+..+.......+.|+++|+||+|+.+....+++...+.........++++++||++|.|++++|+++.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999999987765557899999999999987766777877777666666778999999999999999999999988
Q ss_pred hcC
Q 030122 178 KSG 180 (182)
Q Consensus 178 ~~~ 180 (182)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 765
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=205.02 Aligned_cols=165 Identities=58% Similarity=0.938 Sum_probs=149.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
..+||+++|++|+|||||++++.++.+..+.||.++....+.+....+.+||+||+++++..+..+++++|++++|+|++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 85 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC 85 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECC
Confidence 45899999999999999999999998877889999888888889999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++.++.....|+..++......+.|+++|+||+|+.+....+++...+.........++++++||++|.|++++|+++.+
T Consensus 86 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (171)
T 1upt_A 86 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 165 (171)
T ss_dssp CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHH
Confidence 99999999999998877655578999999999999887777778777776666677889999999999999999999999
Q ss_pred HHhcC
Q 030122 176 TLKSG 180 (182)
Q Consensus 176 ~i~~~ 180 (182)
.+.++
T Consensus 166 ~i~~~ 170 (171)
T 1upt_A 166 TLKSR 170 (171)
T ss_dssp HHHTC
T ss_pred HHhhc
Confidence 98765
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=211.37 Aligned_cols=168 Identities=40% Similarity=0.736 Sum_probs=146.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+...++|+++|++|||||||++++.+..+..+.||.++....+.+.++.+.+||++|++.++..+..+++++|++++|||
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID 92 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 35678999999999999999999999877668899998888888889999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
++++.+++.+..|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|+++
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172 (181)
T ss_dssp TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence 99999999999999888776555789999999999998877777777777666556677899999999999999999999
Q ss_pred HHHHhcCC
Q 030122 174 SNTLKSGG 181 (182)
Q Consensus 174 ~~~i~~~~ 181 (182)
.+.+.+++
T Consensus 173 ~~~~~~~~ 180 (181)
T 1fzq_A 173 CKNVNAKK 180 (181)
T ss_dssp HHTC----
T ss_pred HHHHHhcc
Confidence 99876553
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=210.61 Aligned_cols=168 Identities=28% Similarity=0.565 Sum_probs=147.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
....+||+++|++|+|||||+++|.++.+.. +.+|.+.....+....+.+.+||+||++++..++..+++++|++++||
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 4567899999999999999999999988876 889999888888889999999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++++++.+..|+..++......+.|+++|+||+|+......+++.+.+.........++++++||++|.|++++|++
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999877654578999999999999877666777777766656667788999999999999999999
Q ss_pred HHHHHhcCC
Q 030122 173 LSNTLKSGG 181 (182)
Q Consensus 173 l~~~i~~~~ 181 (182)
+.+.+.+++
T Consensus 179 l~~~~~~~~ 187 (188)
T 1zd9_A 179 LIQHSKSRR 187 (188)
T ss_dssp HHHTCC---
T ss_pred HHHHHHhhc
Confidence 999887765
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=209.97 Aligned_cols=168 Identities=46% Similarity=0.855 Sum_probs=146.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.....+||+++|++|||||||+++++++.+..+.||.++....+.+.++.+.+||+||+++++.++..+++++|++++||
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~ 104 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 104 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 35567999999999999999999999988877888999888888888999999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++++++.+..|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|++
T Consensus 105 D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 184 (192)
T 2b6h_A 105 DSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDW 184 (192)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHH
Confidence 99999999999999999887655578999999999999877677788888877766677889999999999999999999
Q ss_pred HHHHHhcC
Q 030122 173 LSNTLKSG 180 (182)
Q Consensus 173 l~~~i~~~ 180 (182)
+.+.+.++
T Consensus 185 l~~~i~~q 192 (192)
T 2b6h_A 185 LSHELSKR 192 (192)
T ss_dssp HHHHTTTC
T ss_pred HHHHHhcC
Confidence 99988653
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=208.79 Aligned_cols=166 Identities=42% Similarity=0.686 Sum_probs=144.4
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+....+||+++|++|||||||+++|.++.+..+.+|.++....+.+.+..+.+||++|+++++.++..+++++|++++
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 34456779999999999999999999999998668899998888888889999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|||++++.+++.+..|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 174 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence 99999999999999999988776445789999999999998876777787777666666677899999999999999999
Q ss_pred HHHHHH
Q 030122 171 DWLSNT 176 (182)
Q Consensus 171 ~~l~~~ 176 (182)
++|.+.
T Consensus 175 ~~l~~~ 180 (181)
T 2h17_A 175 EWMMSR 180 (181)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 999764
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=206.79 Aligned_cols=167 Identities=52% Similarity=0.939 Sum_probs=150.5
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++.++.+..+.||.++....+.+....+.+|||||+++++..+..+++++|++++|+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 45789999999999999999999988887788899988888888999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++++++.+..|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|+++.
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHH
Confidence 99999999999999988766567899999999999988777777887777666667788999999999999999999999
Q ss_pred HHHhcCC
Q 030122 175 NTLKSGG 181 (182)
Q Consensus 175 ~~i~~~~ 181 (182)
+.+.+++
T Consensus 180 ~~i~~~~ 186 (189)
T 2x77_A 180 ERLREQG 186 (189)
T ss_dssp HHHHHTC
T ss_pred HHHHhcc
Confidence 9887653
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-36 Score=207.75 Aligned_cols=170 Identities=35% Similarity=0.617 Sum_probs=143.3
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCC-Ccc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGE-VVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~-~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
......+||+++|++|||||||+++|.+.. +.. +.+|.++....+.+.+..+.+||++|+++++..+..+++++|+++
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 345567899999999999999999999887 344 888999888888888899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCC--CCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEEL--KGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+++.+..|+..+...... .+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 175 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQ 175 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHH
Confidence 999999999999999999998876544 689999999999998776677777666555445567889999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 030122 168 EGMDWLSNTLKSGG 181 (182)
Q Consensus 168 ~~~~~l~~~i~~~~ 181 (182)
++|+++.+.+.+.+
T Consensus 176 ~l~~~l~~~i~~~k 189 (190)
T 2h57_A 176 EGVDWLQDQIQTVK 189 (190)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987765
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=204.71 Aligned_cols=166 Identities=42% Similarity=0.757 Sum_probs=147.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++.++....+.||.++....+.+.+..+.+|||||+++++..+..+++++|++++|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence 46789999999999999999999988844488999988888888999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++.+++.+..|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|+++.
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (186)
T 1ksh_A 96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 175 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988765557899999999999988777777777776665566778999999999999999999999
Q ss_pred HHHhcC
Q 030122 175 NTLKSG 180 (182)
Q Consensus 175 ~~i~~~ 180 (182)
+.+.++
T Consensus 176 ~~i~~~ 181 (186)
T 1ksh_A 176 DDISSR 181 (186)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 988754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=204.94 Aligned_cols=165 Identities=44% Similarity=0.707 Sum_probs=143.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...++|+++|++|||||||+++|.++.+..+.||.++....+.+.+..+.+||++|+++++.++..+++++|++++|+|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 93 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 93 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 45689999999999999999999988887788899988888888899999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++++++.+..|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|++++|+++.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (187)
T 1zj6_A 94 TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 173 (187)
T ss_dssp TCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHH
Confidence 99999999999999988765457899999999999987666777777766555556678999999999999999999999
Q ss_pred HHHhc
Q 030122 175 NTLKS 179 (182)
Q Consensus 175 ~~i~~ 179 (182)
+.+..
T Consensus 174 ~~~~~ 178 (187)
T 1zj6_A 174 SRLKI 178 (187)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 98764
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=205.17 Aligned_cols=166 Identities=55% Similarity=0.940 Sum_probs=145.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...++|+++|++|||||||++++.++.+..+.+|.++....+.+.+..+.+||+||+++++..+..+++++|++++|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDS 95 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 56789999999999999999999988886688999988888888889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++.+++.+..|+..+.......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|+++.
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 96 TDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175 (183)
T ss_dssp TCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 99999999999999987765457899999999999987767777877777666666778999999999999999999999
Q ss_pred HHHhcC
Q 030122 175 NTLKSG 180 (182)
Q Consensus 175 ~~i~~~ 180 (182)
+.+.++
T Consensus 176 ~~~~~~ 181 (183)
T 1moz_A 176 DVIKEE 181 (183)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=203.48 Aligned_cols=162 Identities=30% Similarity=0.500 Sum_probs=140.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++.++.+..+.+|.+.....+.+.++.+.+|||||+++++.++..+++++|++++|||+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 100 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA 100 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEEC
Confidence 34579999999999999999999999887788999988888888889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccc-------cCCCceEEEEecccCCCCHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK-------IKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+++.+|+.+..|+..++......+.|+++|+||+|+.+....+++.+.+.... .....++++++||++|.|++
T Consensus 101 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 180 (190)
T 1m2o_B 101 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYL 180 (190)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHH
T ss_pred CChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHH
Confidence 99999999999999988765557899999999999987666667766654432 23356789999999999999
Q ss_pred HHHHHHHHH
Q 030122 168 EGMDWLSNT 176 (182)
Q Consensus 168 ~~~~~l~~~ 176 (182)
++|+++.+.
T Consensus 181 ~l~~~l~~~ 189 (190)
T 1m2o_B 181 EAFQWLSQY 189 (190)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999999764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=204.69 Aligned_cols=163 Identities=25% Similarity=0.477 Sum_probs=132.5
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++.++.+..+.||.+.....+.+.+..+.+|||||+++++.++..+++++|++++|||+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~ 102 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDC 102 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEET
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEEC
Confidence 44679999999999999999999998887788899888888888889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccc---------c---CCCceEEEEecccC
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK---------I---KNRQWAIFKTCAIK 162 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa~~ 162 (182)
+++++|+.+..|+..++......++|+++|+||+|+......+++.+.+.... . ....++++++||++
T Consensus 103 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 182 (198)
T 1f6b_A 103 ADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLK 182 (198)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTT
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCC
Confidence 99999999999999988765557899999999999987666666666554322 1 12567899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i 177 (182)
|.|++++|+++.+.+
T Consensus 183 g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 183 RQGYGEGFRWMAQYI 197 (198)
T ss_dssp TBSHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999998654
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=214.56 Aligned_cols=167 Identities=50% Similarity=0.918 Sum_probs=147.0
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+|+|.+|+|||||+++|.++.+....||.+.....+...++.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~ 242 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 242 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 45679999999999999999999999987767899988888888999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++.+|..+..|+..++......++|+++|+||+|+.+....+++...+.........++++++||++|.|++++|++|.
T Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence 99999999999999888776667999999999999998878888888888877777889999999999999999999999
Q ss_pred HHHhcCC
Q 030122 175 NTLKSGG 181 (182)
Q Consensus 175 ~~i~~~~ 181 (182)
+.+.+++
T Consensus 323 ~~l~~~k 329 (329)
T 3o47_A 323 NQLRNQK 329 (329)
T ss_dssp HHHTC--
T ss_pred HHHHhcC
Confidence 9987653
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=194.11 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=128.1
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
..++...+||+++|++|||||||+++++++.+.. +.+|.+.....+.+.+ +.+.+|||+|+++++ +++.+|+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 3456788999999999999999999999998877 7777665555666644 778889999999876 6677999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC----CCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG----ALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|||++++.+|+.+..|+..+.......++|+++|+||+|+.. ....++....... ...++++++||++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~ 164 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYG 164 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCC
Confidence 999999999999999999999998765456899999999999842 2222332222111 11357999999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 030122 164 EGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~~ 181 (182)
.|++++|+++++.+.+.+
T Consensus 165 ~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 165 LNVERVFQDVAQKVVALR 182 (184)
T ss_dssp BTHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999887543
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=193.72 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=129.6
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
...+||+++|++|+|||||+++|.++.+.. +.+|.+... ..+.+.+ +.+.+||+||++++..++..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 356899999999999999999999888766 778887443 3344444 788999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||++++++++.+..|+..+.......++|+++|+||+|+.+... .++..... ...+++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHHH
Confidence 999999999999999999887766557899999999999965432 22222211 22345799999999999999
Q ss_pred HHHHHHHHHhcCC
Q 030122 169 GMDWLSNTLKSGG 181 (182)
Q Consensus 169 ~~~~l~~~i~~~~ 181 (182)
+|+++.+.+.+.+
T Consensus 159 l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 159 VFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=192.15 Aligned_cols=160 Identities=12% Similarity=0.034 Sum_probs=106.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
.+||+++|++|||||||++++.+.......++.+... ..+.+ ..+.+.+||++|++.++.++..+++.+|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 4799999999999999999999877666555555332 23334 55789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
++++.+++.+..|+..+.......++|+++|+||+|+.+.... .+....+. ...+++++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA----VVFDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH----HHTTCEEEECBGGGTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH----HHhCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999999987765678999999999999764332 11111111 123457999999999999999999
Q ss_pred HHHHHhcC
Q 030122 173 LSNTLKSG 180 (182)
Q Consensus 173 l~~~i~~~ 180 (182)
+.+.+.++
T Consensus 158 l~~~~~~~ 165 (166)
T 3q72_A 158 VVRQIRLR 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988764
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=198.86 Aligned_cols=164 Identities=12% Similarity=0.086 Sum_probs=127.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE-EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
-+....+||+++|++|||||||+++|.++.+.. +.+|.+..... +.+ ..+.+.+||+||++++..++..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 345578999999999999999999999998877 77777744322 222 66889999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++.+++.+..|+..+.......++|+++|+||+|+.+... ..+.. .+. ...+++++++||++|.|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGK-KLA----ESWGATFMESSARENQL 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHH-HHH----HHHTCEEEECCTTCHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHH-HHH----HHhCCeEEEEeCCCCCC
Confidence 999999999999999999999988775557899999999999875432 22221 111 12235799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030122 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 i~~~~~~l~~~i~~~ 180 (182)
++++|+++.+.+.+.
T Consensus 174 v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 174 TQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988754
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=192.81 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=126.3
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||+++|++|+|||||+++|.+..+.. +.+|++ +....+.+.+ +.+.+||++|+++++.++..+++++|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 345567899999999999999999999988876 778877 4445556644 79999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--CCHHHHHHhhcccccCCCce-EEEEecccCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQW-AIFKTCAIKG 163 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (182)
++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+. ...++..+.. ...++ +++++||++|
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g 177 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDS 177 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCC
Confidence 9999999999999999999998886653 367999999999999753 2233332222 12234 7999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++|+++.+.+.++
T Consensus 178 ~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 178 SNVEEAFLRVATELIMR 194 (201)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988754
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=190.40 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=134.1
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCC
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~ 84 (182)
.+......+||+++|++|||||||+++|.+..+.. +.+|.+... ..+.+ ..+.+.+||+||++++..++..+++.
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (195)
T 1x3s_A 8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87 (195)
T ss_dssp -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 33445567999999999999999999999998876 778877444 44444 45789999999999999999999999
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+|++++|||++++.++..+..|+..+.......++|+++|+||+|+.... ..++..... ....++++++||++|
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 162 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTC 162 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTC
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCC
Confidence 99999999999999999999999988776545689999999999995432 222222211 223457999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++|+++.+.+.+.
T Consensus 163 ~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 163 DGVQCAFEELVEKIIQT 179 (195)
T ss_dssp TTHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988754
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=189.27 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=131.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
......+||+++|++|+|||||+++|.++.+.. +.+|.+... ..+.. ..+.+.+||+||++.+..++..+++++|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 445668999999999999999999999888776 777777433 33344 34567789999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEeccc-CCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAI-KGE 164 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~ 164 (182)
+++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+... .++..... +..+++++++||+ +|.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPL 167 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH-----HHhCCeEEEeccCCCCC
Confidence 999999999999999999999887755557899999999999976332 22222211 1112459999999 999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|+++.+.+.++
T Consensus 168 ~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 168 NVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhhC
Confidence 9999999999988753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=192.79 Aligned_cols=158 Identities=20% Similarity=0.261 Sum_probs=127.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|||||||++++.++.+.. +.++.+... ..+.+ ..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 35899999999999999999999988776 778887443 44444 44689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-----CHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-----DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++.. .+ ....+++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGE-KL----AEEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHH-HH----HHHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHH-HH----HHHcCCEEEEEeCCCCCC
Confidence 999999999999999988887653 3689999999999986531 112221 11 112345799999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++|+++.+.+.+
T Consensus 156 i~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 156 VNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987654
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=188.37 Aligned_cols=163 Identities=15% Similarity=0.189 Sum_probs=130.9
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCC
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (182)
.......+||+++|++|+|||||+++|+++.+.. +.++.+... ..+.. ..+.+.+||+||++++...+..++..+
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 95 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA 95 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC
Confidence 3345567899999999999999999999998866 677777444 34444 457899999999999999999999999
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
|++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..... +..+++++++||++|
T Consensus 96 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g 169 (189)
T 2gf9_A 96 MGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDLGFEFFEASAKEN 169 (189)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEECCCC
Confidence 99999999999999999999988876542 35899999999999975322 22222211 112347999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++|+++.+.+.+
T Consensus 170 ~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 170 INVKQVFERLVDVICE 185 (189)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=192.57 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=133.2
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.++...+||+++|++|||||||+++|.+..+.. +.+|.+.... .+.+. .+.+.+||+||++++..++..+++.+|+
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 345667999999999999999999999988766 7788774433 34444 3689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++.+++.+..|+..++......++|+++|+||+|+.+... .++.. .+. ...+++++++||++|.|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~~~g 158 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS-AFG----ASHHVAYFEASAKLRLN 158 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH-HHH----HHTTCEEEECBTTTTBS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH-HHH----HHcCCeEEEecCCCCCC
Confidence 999999999999999999999886655557899999999999975332 22222 221 22346799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030122 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 i~~~~~~l~~~i~~~ 180 (182)
++++|+++.+.+.+.
T Consensus 159 v~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 159 VDEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988653
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=195.06 Aligned_cols=165 Identities=22% Similarity=0.290 Sum_probs=126.6
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEeC--CEEEEEEECCCCCCCh-hhhhhhCC
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQYN--NIKFQVWDLGGQTSIR-PYWRCYFP 83 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~i~d~~g~~~~~-~~~~~~~~ 83 (182)
...+....+||+++|++|||||||+++|+++.+.. ..++.+. ....+.+. .+.+.+||+||++++. .++..+++
T Consensus 13 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (189)
T 1z06_A 13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 92 (189)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHT
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhc
Confidence 44556678999999999999999999999988876 7777774 44455554 4789999999999888 78899999
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEeccc
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
++|++++|||++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++.. .+. ...+++++++||+
T Consensus 93 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~ 167 (189)
T 1z06_A 93 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ-KFA----DTHSMPLFETSAK 167 (189)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCCEEECCSS
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH-HHH----HHcCCEEEEEeCC
Confidence 9999999999999999999999999887765457899999999999965322 22222 211 1223469999999
Q ss_pred CC---CCHHHHHHHHHHHHhc
Q 030122 162 KG---EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~---~~i~~~~~~l~~~i~~ 179 (182)
+| .|++++|++|.+.+.+
T Consensus 168 ~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 168 NPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp SGGGGSCHHHHHHHHC-----
T ss_pred cCCcccCHHHHHHHHHHHHhh
Confidence 99 9999999999887754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=190.19 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=130.7
Q ss_pred cccCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhC
Q 030122 8 SVTSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYF 82 (182)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~ 82 (182)
+.........+||+++|++|||||||+++|.+..+.. ..+|.+ +....+.+. .+.+.+||+||+++++.++..++
T Consensus 12 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 91 (191)
T 2a5j_A 12 SGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY 91 (191)
T ss_dssp CCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHh
Confidence 3344556778999999999999999999999988876 666666 444455554 47899999999999999999999
Q ss_pred CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecc
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||
T Consensus 92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 165 (191)
T 2a5j_A 92 RGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSA 165 (191)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeC
Confidence 99999999999999999999999988886643 3689999999999996532 222222211 122457999999
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 030122 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~ 179 (182)
++|.|++++|+++.+.+.+
T Consensus 166 ~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 166 KTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=185.87 Aligned_cols=164 Identities=13% Similarity=0.204 Sum_probs=129.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
+....++|+++|++|+|||||++++.+..+.. +.+|.+... ..+.+.+ +.+.+||+||+++++..+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 34567899999999999999999999988776 778887544 4444543 689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccC---CCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|||++++.+++.+..|+..+..... ..++|+++|+||+|+... ...++...... ....++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDA 158 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCC
Confidence 9999999999999999988888765432 267899999999999732 22333332221 123456999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++|+++.+.+.++
T Consensus 159 ~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 159 TNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988764
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=187.42 Aligned_cols=163 Identities=20% Similarity=0.241 Sum_probs=131.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||+++|++|+|||||+++|.++.+.. +.++.+.. ...+.+.+ +.+.+||+||++.+..++..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 344567899999999999999999999988776 77777744 44555544 78999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.... ++..... ...+++++++||++|.
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIPFLETSAKNAT 164 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEEECTTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCC
Confidence 9999999999999999999988886553 358999999999999765332 2221111 1123469999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|+++.+.+.++
T Consensus 165 gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 165 NVEQSFMTMAAEIKKR 180 (196)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988754
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-32 Score=189.75 Aligned_cols=162 Identities=20% Similarity=0.239 Sum_probs=130.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||+++|++|||||||+++|+++.+.. +.+|++.+. ..+.+. .+.+.+||++|+++++.++..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 445667899999999999999999999988876 778887444 445554 368999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 174 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESD 174 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCEEEEEeCCCCC
Confidence 9999999999999999999988876543 35799999999999974322 22222111 1123469999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+++.+.+.+
T Consensus 175 gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 175 NVEKLFLDLACRLIS 189 (201)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=192.32 Aligned_cols=162 Identities=16% Similarity=0.188 Sum_probs=131.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||+++|++|+|||||+++|++..+.. ..+|.+.... .+.+ ..+.+.+||+||++++..++..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 445667999999999999999999999988876 7778775443 3333 4578999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 173 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDST 173 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCC
Confidence 9999999999999999999988886543 3689999999999997532 222222211 2234579999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+++.+.+.+
T Consensus 174 gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 174 NVELAFETVLKEIFA 188 (193)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=185.44 Aligned_cols=160 Identities=21% Similarity=0.257 Sum_probs=127.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.....+||+++|++|||||||+++|.+..+.. +.++.+ +....+.+.+ +.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 44567899999999999999999999988776 677777 4444555555 789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+... .++..... ...+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 157 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVN 157 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCC
Confidence 999999999999999999998887653 6899999999999875432 22221111 11234599999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++|+++.+.+.+
T Consensus 158 i~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 158 VEEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=193.45 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=127.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.+....+||+++|++|||||||+++|+++.+.. +.+|.+.... .+.+ ..+.+.+||++|++++..++..+++++|+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345567999999999999999999999998877 7888885543 2233 55889999999999999999999999999
Q ss_pred EEEEEeCCCcchHHH-HHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--------------CCHHHHHHhhcccccCCCc
Q 030122 88 VIYVVDSSDTDRIQT-AKEEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKNRQ 152 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~ 152 (182)
+|+|||++++.+|+. +..|+..+.... .+.|+++|+||+|+.++ ...++.... .+..+
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~ 174 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI-----AKQLG 174 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH-----HHHHT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH-----HHHcC
Confidence 999999999999998 678888876653 68999999999999752 222222111 12223
Q ss_pred e-EEEEecccCCCC-HHHHHHHHHHHHhcC
Q 030122 153 W-AIFKTCAIKGEG-LFEGMDWLSNTLKSG 180 (182)
Q Consensus 153 ~-~~~~~Sa~~~~~-i~~~~~~l~~~i~~~ 180 (182)
+ +++++||++|.| ++++|+++++.+.+.
T Consensus 175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 175 AEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 4 699999999998 999999999988754
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=189.79 Aligned_cols=163 Identities=18% Similarity=0.177 Sum_probs=130.0
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
..+...+||+++|++|+|||||+++|.+..+.. ..++.+.. ...+.+ ..+.+.+||+||+++++..+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 345567899999999999999999999988877 66777743 444445 3578999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 160 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTAT 160 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCC
Confidence 9999999999999999999998887653 35899999999999975432 23332221 1234579999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|+++.+.+.+.
T Consensus 161 gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 161 NVKEIFYEIARRLPRV 176 (181)
T ss_dssp THHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999887654
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=189.48 Aligned_cols=159 Identities=11% Similarity=0.014 Sum_probs=116.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCc--eeeEEEEeC--CEEEEEEECCCCCC--ChhhhhhhCCCCCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG--FNVETVQYN--NIKFQVWDLGGQTS--IRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~--~~~~~i~d~~g~~~--~~~~~~~~~~~~~~~i 89 (182)
..+||+++|++|+|||||+++|.+..+....++.+ +....+.+. .+.+.+||++|++. +..+...+++.+|+++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 46899999999999999999999988776445555 334455553 46889999999988 5677788899999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+... .++... +. ...+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~g~gi~ 157 (175)
T 2nzj_A 83 IVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-CA----VVFDCKFIETSATLQHNVA 157 (175)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-HH----HHHTSEEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-HH----HHcCCeEEEEecCCCCCHH
Confidence 9999999999999999998887764456899999999999976432 222211 11 1123579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (175)
T 2nzj_A 158 ELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=185.63 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=128.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+.+||+++|++|||||||++++.++.+.. +.+|.+.... .+.+ ..+.+.+||+||++++..++..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 35899999999999999999999988776 7777774433 2333 467899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++...... . ...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~---~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-Q---WCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-H---TTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH-H---ccCCcEEEecCCCCCCHHHH
Confidence 99999999999999988887754456899999999999975432 222222111 1 12467999999999999999
Q ss_pred HHHHHHHHh
Q 030122 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~i~ 178 (182)
|+++.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998874
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=193.96 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=131.8
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.++...++|+++|++|||||||+++|.+..+.. +.+|.+.. ...+.+. .+.+.+||+||++++..++..++..+|+
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345567899999999999999999999888766 77777733 3444453 3689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++.+++.+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 163 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRAN 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCCC
Confidence 99999999999999999999998876545689999999999997532 233332222 12235699999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++|+++.+.+.+
T Consensus 164 i~~l~~~l~~~i~~ 177 (206)
T 2bov_A 164 VDKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=185.63 Aligned_cols=160 Identities=14% Similarity=0.098 Sum_probs=127.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
++...+||+++|++|+|||||+++|.++.+.. +.+|.+... ..+.+. .+.+.+||++|+++++.++..+++++|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 44567899999999999999999999988766 777877333 344443 48899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCC--------------CHHHHHHhhcccccCCCce
Q 030122 89 IYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGAL--------------DDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~ 153 (182)
++|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+.. ..++.... .+..++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~ 166 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL-----AKEIGA 166 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH-----HHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH-----HHHcCC
Confidence 9999999999999987 6877776543 589999999999997631 11111111 111122
Q ss_pred -EEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 154 -AIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 154 -~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
+++++||++|.|++++|+++.+.+..
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 59999999999999999999998763
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-33 Score=187.94 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=127.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|+|||||++++.+..+.. +.+|.+... ..+.+ ..+.+.+||+||++++..++..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 35899999999999999999999988766 677776433 33444 346899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+++.+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHH
Confidence 9999999999999999988776555689999999999996532 233332222 122357999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|+++.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998875
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=190.05 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=129.2
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC---EEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN---IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~---~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
...+||+++|++|||||||+++|.++.+.. +.||.+ +....+.+.+ +.+.+||+||++.+..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 456899999999999999999999988766 677877 5556666644 8999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccC-CCCCe-EEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEE-LKGAV-ALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p-~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|||++++.+++.+..|+..+..... ..+.| +++|+||+|+.+.. ..++..... +..+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----QENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCC
Confidence 999999999999999888887765321 12444 89999999997532 222222211 1223579999999999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 030122 165 GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~~ 181 (182)
|++++|+++.+.+.+.+
T Consensus 159 gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGIK 175 (178)
T ss_dssp THHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999999887653
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=183.78 Aligned_cols=162 Identities=17% Similarity=0.250 Sum_probs=122.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCceeeEE--EEeC--CEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNVET--VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
.....+||+++|++|+|||||+++|.+..+.. +.+|.+..... +.+. .+.+.+||+||+++++.++..+++++|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 34567899999999999999999999988853 67777755443 3443 468999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+... .++..... +..+++++++||++|.
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 159 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGL 159 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEeCCCCC
Confidence 99999999999999999999888766532 6899999999999976432 22222111 1123469999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|+++.+.+.++
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 160 NVDLAFTAIAKELKRR 175 (180)
T ss_dssp THHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=187.83 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=131.2
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.+....+||+++|++|+|||||+++|.+..+.. +.+|.+... ..+.+. .+.+.+||+||++++..++..+++.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 345567999999999999999999999988766 677776433 334443 3689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++.+++.+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRAN 167 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCC
Confidence 99999999999999999999988776655689999999999986532 233332222 22345799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030122 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 i~~~~~~l~~~i~~~ 180 (182)
++++|+++.+.+.++
T Consensus 168 i~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 168 VDKVFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988653
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=191.32 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=125.6
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
.+....+||+++|++|+|||||+++|.+..+.. +.+|.+.+ ...+.+. .+.+.+||++|++++..++..+++++|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 445667899999999999999999999988766 67777744 4445554 478999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++.. .+... ...++++++||++|.
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~~~~---~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGE-KFAQQ---ITGMRFCEASAKDNF 175 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHH-HHHHT---STTCEEEECBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHH-HHHHh---cCCCeEEEEeCCCCC
Confidence 999999999999999998887776544 335899999999999975332 22222 22111 135679999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|+++.+.+.++
T Consensus 176 gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 176 NVDEIFLKLVDDILKK 191 (192)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988653
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=189.22 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=130.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.....+||+++|++|||||||+++|.+..+.. +.+|.+.. ...+.+ ..+.+.+||+||++++...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 35567999999999999999999999988766 67777743 444444 34789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+.. ...+++++++||++|.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGEN 164 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999999999999988876543 3589999999999996532 223332222 12345799999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++|+++.+.+.+
T Consensus 165 i~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 165 VEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=191.98 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=101.6
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|||||||+++|.++.+.. +.+|.+.+. ..+.+.+ +.+.+||+||++++..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 456899999999999999999999888765 677777443 4555544 88999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+... .++..... +..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999988886642 35799999999999976432 23322211 1223579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-34 Score=197.69 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=131.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||+++|++|||||||+++|.++.+.. +.++.+ +....+.. ..+.+.+||++|++.+..++..+++++|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 445567899999999999999999999988766 666666 44444444 6789999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+... .++..... ...+++++++||++|.
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLA-----EQLGFDFFEASAKENI 171 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEECCCCC
Confidence 9999999999999999999988886643 46899999999999865322 22221111 1223569999999999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 030122 165 GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~~ 181 (182)
|++++|+++.+.+.++.
T Consensus 172 gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 172 SVRQAFERLVDAICDKM 188 (191)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999887643
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=186.81 Aligned_cols=162 Identities=14% Similarity=0.168 Sum_probs=127.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE-EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
.....+||+++|++|+|||||+++|.++.+.. +.+|.+..... +.+ ..+.+.+||+||++++..++..+++++|++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 45567999999999999999999999998876 78888744433 333 446779999999999999999999999999
Q ss_pred EEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCC----CCHHHHHHhhcccccCCCceE-EEEecccC
Q 030122 89 IYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWA-IFKTCAIK 162 (182)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 162 (182)
++|||++++.+++.+ ..|+..+... ..++|+++|+||+|+.+. ...++...... ..++. ++++||++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIEASSVA 171 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEEeecCC
Confidence 999999999999997 5666666543 368999999999999753 22233222211 11223 99999999
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 030122 163 GEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~~~ 181 (182)
|.|++++|+++.+.+.+++
T Consensus 172 ~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999988764
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=188.13 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=129.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
+...+||+++|++|+|||||+++|+++.+.. +.++.+... ..+.+ ..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3457899999999999999999999988877 677777444 34444 367899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.. ..++..... ....++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Confidence 99999999999999999988886653 3689999999999986532 223322221 223467999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030122 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~~~~~l~~~i~~ 179 (182)
+++|++|.+.+.+
T Consensus 157 ~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 157 NEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=192.70 Aligned_cols=164 Identities=11% Similarity=0.019 Sum_probs=125.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeC--CEEEEEEECCCCCCChh-hhhhhCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRP-YWRCYFPNTE 86 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~d~~g~~~~~~-~~~~~~~~~~ 86 (182)
+....+||+++|++|||||||+++|.+..... ..++.+ .....+.+. .+.+.+||++|++++.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 34567899999999999999999997544322 333333 444555553 46889999999998765 7888889999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+... .++... +. +..+++++++||++|.
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~a----~~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-LA----GTLSCKHIETSAALHH 173 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCEEEEEBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-HH----HHhCCEEEEEcCCCCC
Confidence 9999999999999999999999887654445899999999999975432 223221 11 1223579999999999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 030122 165 GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~~ 181 (182)
|++++|+++++.+.+.+
T Consensus 174 ~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLRR 190 (195)
T ss_dssp SHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999987654
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=187.19 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=125.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|||||||+++|.++.+.. +.+|.+ .....+.+. .+.+.+||+||++.+..++..+++.+|++++|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 56899999999999999999999888766 666665 333344443 45688899999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
||++++.+++.+..|+..+.......+.|+++|+||+|+.+.....+....+. ...+++++++||++|.|++++|+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 83 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999888766567899999999999975432222222221 11124599999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
++.+.+.+
T Consensus 159 ~l~~~~~~ 166 (189)
T 4dsu_A 159 TLVREIRK 166 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=188.85 Aligned_cols=160 Identities=9% Similarity=-0.009 Sum_probs=117.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe--CCEEEEEEECCCCCCChh-hhhhhCCCCCEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY--NNIKFQVWDLGGQTSIRP-YWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~--~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~i~ 90 (182)
.+||+++|++|||||||+++|.+..+.. ..++.......+.+ ..+.+.+||++|++++.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999999766554 33333455555555 347889999999998876 77778889999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||++++++++.+..|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCcEEEecCccCCCHHH
Confidence 99999999999999999998876655689999999999997432 222222111 22345799999999999999
Q ss_pred HHHHHHHHHhcCC
Q 030122 169 GMDWLSNTLKSGG 181 (182)
Q Consensus 169 ~~~~l~~~i~~~~ 181 (182)
+|+++.+.+..++
T Consensus 157 l~~~l~~~i~~~r 169 (169)
T 3q85_A 157 LFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=188.90 Aligned_cols=160 Identities=17% Similarity=0.216 Sum_probs=129.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....+||+++|++|||||||+++|.+..+.. +.++.+.. ...+.+.+ +.+.+||+||++++...+..+++++|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 3567899999999999999999999988876 77777744 34445544 7899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENV 160 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCH
Confidence 99999999999999999988776543 3689999999999996432 222222211 223467999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030122 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~~~~~l~~~i~~ 179 (182)
+++|+++.+.+.+
T Consensus 161 ~~l~~~l~~~~~~ 173 (186)
T 2bme_A 161 EEAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=185.56 Aligned_cols=162 Identities=16% Similarity=0.228 Sum_probs=132.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE---EEEeC-----------CEEEEEEECCCCCCChhh
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE---TVQYN-----------NIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~---~~~~~-----------~~~~~i~d~~g~~~~~~~ 77 (182)
+....+||+++|++|+|||||+++|.++.+.. +.+|.+.... .+.+. .+.+.+||+||++++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 45567999999999999999999999988876 7888886554 33333 479999999999999999
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEE
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (182)
+..+++++|++|+|||++++.+++.+..|+..+.......++|+++|+||+|+.+.. ..++...... ..++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KYGIPY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCCE
Confidence 999999999999999999999999999999988776555689999999999997532 2233222211 112459
Q ss_pred EEecccCCCCHHHHHHHHHHHHhc
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
+++||++|.|++++|++|.+.+.+
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=188.48 Aligned_cols=161 Identities=16% Similarity=0.230 Sum_probs=125.8
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCccc-----------cCCCceeeEEEE---e--CCEEEEEEECCCCCCCh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVST-----------IPTIGFNVETVQ---Y--NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~-----------~~t~~~~~~~~~---~--~~~~~~i~d~~g~~~~~ 75 (182)
......+||+++|++|||||||++.+.+.....+ .+|.+.+..... + ..+.+.+|||||+++++
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 4456789999999999999999976665433323 234443333221 1 45789999999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCC------CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccC
Q 030122 76 PYWRCYFPNTEAVIYVVDSS------DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~ 149 (182)
.++..+++++|++|+|||++ +.++++.+..|+..+.. ...++|+++|+||+|+.+....+++.+...
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----- 161 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDALPVEMVRAVVD----- 161 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccccCHHHHHHHHH-----
Confidence 99999999999999999999 55778888888887732 347899999999999988766666655443
Q ss_pred CCce-EEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 150 NRQW-AIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 150 ~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
..++ +++++||++|.|++++|+++.+.+.+
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 2334 69999999999999999999998864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=186.07 Aligned_cols=162 Identities=20% Similarity=0.178 Sum_probs=130.6
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||+++|++|+|||||+++|++..+.. +.++.+..... +.+ ....+.+||+||++++...+..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 344567999999999999999999999998765 78888855443 333 5679999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.. ..++..+.. +..+++++++||++|.
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAI 171 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTB
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCc
Confidence 9999999999999999999988886643 3589999999999997422 233333222 2345679999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+++.+.+.+
T Consensus 172 gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 172 NIEELFQGISRQIPP 186 (192)
T ss_dssp SHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=188.35 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=117.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC---CEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
....++|+++|++|||||||++++.+..+.. +.+|.+.. ...+.+. ...+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4457899999999999999999999988766 77777643 3444443 5789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccC---CCCCeEEEEeeCCCCCCCC---CHHHHHHhhcccccCCCceEEEEeccc
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGAL---DDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~i~v~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+++|||++++.+++.+..|+..+..... ..++|+++|+||+|+.... ..++...... .....+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 9999999999999999999888765432 2678999999999995432 2222222211 1234569999999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030122 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~~ 180 (182)
+|.|++++|+++.+.+.++
T Consensus 161 ~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999987653
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=182.11 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=122.6
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|+|||||++++.+..+.. ..+|.+.... .+.+ ..+.+.+||+||++++..++..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 456899999999999999999999988876 7788775443 4444 4468999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Confidence 9999999999999999988875532 2579999999999997532 223322221 2234679999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-31 Score=185.47 Aligned_cols=159 Identities=20% Similarity=0.280 Sum_probs=129.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|+|||||+++|.+..+.. +.+|.+.. ...+.+. .+.+.+||+||+++++..+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 457899999999999999999999988876 77777744 3455553 468999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999988886543 35799999999999976432 22222211 1223569999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=192.23 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=123.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
.+...+||+++|++|||||||+++|+++.+.. +.+|++... ..+.+ ..+.+.+||++|+++++.+ ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 35667999999999999999999999988776 788888443 23344 4578999999999998875 5688999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecc-cCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCA-IKG 163 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~ 163 (182)
++|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.... ..++..+.. +..+++++++|| ++|
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCLFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCcEEEEeecCcc
Confidence 999999999999999999988876421 2589999999999996532 222222211 112357999999 899
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++|+++++.+.+
T Consensus 171 ~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 171 EHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999998865
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-32 Score=195.53 Aligned_cols=163 Identities=17% Similarity=0.228 Sum_probs=133.9
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCC
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (182)
...+...+||+++|.+|||||||+++|+.+.+.. +.+|.+.......+ ..+.+.+|||+|++.+..++..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 3556678999999999999999999988777666 78888855554443 557899999999999999999999999
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|||++++.+++.+..|+..+.... .++|+++|+||+|+.+..... ..........++++++||++|.|
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKA-----KSIVFHRKKNLQYYDISAKSNYN 161 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCG-----GGCCHHHHHTCEEEECBGGGTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccH-----HHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999999999999999999887764 589999999999997643211 11122233456799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030122 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 i~~~~~~l~~~i~~~ 180 (182)
++++|+++.+.+...
T Consensus 162 i~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 162 FEKPFLWLARKLIGD 176 (221)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988754
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.5e-32 Score=193.04 Aligned_cols=161 Identities=20% Similarity=0.210 Sum_probs=124.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....+||+++|++|+|||||+++|.+..+.. +.+|.+ +....+.+.+ +.+.+||+||++++..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 4567899999999999999999999998876 677777 4444555544 7999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.... ..++..... ....++++++||++|.|+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENV 163 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence 99999999999999999998886543 3579999999999997532 222222211 223467999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++|+++.+.+.++
T Consensus 164 ~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 164 DKAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=181.77 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=128.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.++||+++|++|+|||||++++.++.+.. +.+|.+ .....+.+. ...+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 35899999999999999999999888776 667766 333444553 45699999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA-----EEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH-----HHhCCCEEEecCCCCcCHHHH
Confidence 99999999999999998887765556899999999999865322 22222111 112345999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|+++.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-32 Score=184.52 Aligned_cols=159 Identities=21% Similarity=0.218 Sum_probs=129.0
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|+|||||+++|.+..+.. +.++.+... ..+.+ ....+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 356899999999999999999999998766 778877443 34444 3478999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++... +. ....++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKD-YA----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHH-HH----HHcCCEEEEEeCCCCcCHH
Confidence 999999999999999998888664 346899999999999975332 222221 11 1234579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=182.84 Aligned_cols=159 Identities=21% Similarity=0.290 Sum_probs=123.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|+|||||++++.+..+.. ..+|.+.. ...+.+. .+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 35899999999999999999999988866 67777743 4445543 4789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.... ..++..... +..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA-----KELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHH-----HHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999988886643 3589999999999995422 222222111 112346999999999999999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|+++.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=188.03 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=128.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....+||+++|++|+|||||+++|.+..+.. +.+|.+.+... +.+ ..+.+.+||+||++.+..++..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4457899999999999999999999988776 77887755444 333 347899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccC---CCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
|+|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.... ..++...... ....++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 999999999999999988887765432 2478999999999997432 2222222211 1234569999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|++|.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.9e-31 Score=184.92 Aligned_cols=159 Identities=15% Similarity=0.194 Sum_probs=128.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|||||||+++|.+..+.. +.+|.+... ..+.. ..+.+.+||+||++++..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 456899999999999999999999998876 778877444 34444 3578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHCCCeEEEEECCCCCCHH
Confidence 9999999999999999988876543 35799999999999976432 22222111 1123469999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=182.93 Aligned_cols=158 Identities=16% Similarity=0.233 Sum_probs=129.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|||||||+++|.++.+.. +.+|.+.+ ...+.+. .+.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 356899999999999999999999988876 77777744 4444443 568999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence 9999999999999999988887654 689999999999987532 233332221 1223579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-32 Score=191.78 Aligned_cols=163 Identities=17% Similarity=0.261 Sum_probs=130.7
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC------------CEEEEEEECCCCCCChh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN------------NIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~------------~~~~~i~d~~g~~~~~~ 76 (182)
......+||+++|++|||||||+++|++..+.. +.+|.+... ..+.+. .+.+.+||++|++++..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 345667999999999999999999999988866 677777443 344442 57899999999999999
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceE
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWA 154 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~ 154 (182)
.+..+++.+|++|+|||++++.+++.+..|+..+.......++|+++|+||+|+.+... .++..... +..+++
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~ 174 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIP 174 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCC
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCc
Confidence 99999999999999999999999999999988876654446899999999999975322 22222211 112346
Q ss_pred EEEecccCCCCHHHHHHHHHHHHhc
Q 030122 155 IFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
++++||++|.|++++|+++.+.+.+
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-32 Score=189.23 Aligned_cols=163 Identities=17% Similarity=0.237 Sum_probs=128.6
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
..+..++||+++|++|+|||||+++|+++.+.. +.++.+.+. ..+.+.+ +.+.+||+||++++...+..++.++|
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 345567999999999999999999999888776 777777443 4444543 68999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+... .++..... ...+++++++||++|.
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 162 (179)
T 2y8e_A 89 VAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGY 162 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCC
Confidence 9999999999999999999988886543 35899999999999865332 22222211 1223579999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|+++.+.+.++
T Consensus 163 ~i~~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 163 NVKQLFRRVAAALPGM 178 (179)
T ss_dssp SHHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999877553
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-32 Score=193.11 Aligned_cols=160 Identities=19% Similarity=0.245 Sum_probs=121.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....+||+++|++|||||||+++|.++.+.. +.+|.+ +....+.+.+ +.+.+||++|++++..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 4567899999999999999999999988876 677776 4444555544 7999999999998888899999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+..... ..+..... ...+++++++||++|.|+
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENV 175 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence 99999999999999999988876543 26899999999999964322 22222211 223467999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030122 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~~~~~l~~~i~~ 179 (182)
+++|+++.+.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (200)
T 2o52_A 176 EEAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.8e-32 Score=192.13 Aligned_cols=165 Identities=17% Similarity=0.147 Sum_probs=130.5
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CC-EEEEEEECCCCCCChhhhhhhCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NN-IKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~-~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (182)
......+||+++|++|||||||+++|+++.+.. +.+|.+.......+ .. +.+.+||++|++.+..++..++.++
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 344567999999999999999999999888777 78888866555544 12 7899999999999999999999999
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.... .+.... ......++++++||++|.
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~g~ 160 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVME----VLKGKNYEYFEISAKTAH 160 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHH----HTTTCCCEEEEEBTTTTB
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH----HHHHcCCcEEEEecCCCC
Confidence 99999999999999999999988876553 346899999999999754221 111111 223455679999999999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 030122 165 GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~~ 181 (182)
|++++|+++.+.+.+..
T Consensus 161 gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 161 NFGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTTHHHHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999987654
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.9e-32 Score=191.22 Aligned_cols=163 Identities=12% Similarity=0.023 Sum_probs=121.1
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCC--CccccCCCc--eeeEEEEeC--CEEEEEEECCCCCC-ChhhhhhhCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGE--VVSTIPTIG--FNVETVQYN--NIKFQVWDLGGQTS-IRPYWRCYFPN 84 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~--~~~~~~t~~--~~~~~~~~~--~~~~~i~d~~g~~~-~~~~~~~~~~~ 84 (182)
......+||+++|++|||||||+++|++.. +....++++ +....+.+. .+.+.+|||+|++. ++.+...+++.
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 344567899999999999999999999644 333333444 344555554 45678999999887 55677788899
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+... .++. ..+. ...++++++|||++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~-~~~a----~~~~~~~~e~SAk~ 186 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RACA----VVFDCKFIETSAAV 186 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHHH----HHHTCEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH-HHHH----HHcCCEEEEEeCCC
Confidence 999999999999999999999988876544346899999999999964322 2221 1111 12235699999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030122 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~ 179 (182)
|.|++++|+++++.+..
T Consensus 187 g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 187 QHNVKELFEGIVRQVRL 203 (211)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=188.57 Aligned_cols=166 Identities=13% Similarity=0.146 Sum_probs=126.5
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
......+||+++|.+|||||||++++.++.+.. +.+|.+... ..+.+. .+.+.+||+||++++..++..+++++|+
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 345667899999999999999999999988876 777777433 334443 4689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhh---------cccccCCCce-EEE
Q 030122 88 VIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---------ELHKIKNRQW-AIF 156 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~ 156 (182)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.....+..... ........+. +++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYL 177 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEE
Confidence 9999999999999998 56666665432 589999999999997642111111100 0011111223 799
Q ss_pred EecccCCCCHHHHHHHHHHHHhc
Q 030122 157 KTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
++||++|.|++++|+++.+.+.+
T Consensus 178 ~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 178 ECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EeeCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998764
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.3e-31 Score=183.62 Aligned_cols=157 Identities=21% Similarity=0.257 Sum_probs=127.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEeCC--------------------------------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQYNN-------------------------------- 60 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~-------------------------------- 60 (182)
..+||+++|++|+|||||+++|++..+.. +.+|.+.... .+.+.+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 45899999999999999999999998876 7788774443 344433
Q ss_pred -------EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC-
Q 030122 61 -------IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG- 132 (182)
Q Consensus 61 -------~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~- 132 (182)
..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+|...
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~~ 162 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNKF 162 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-C
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcccc
Confidence 889999999999999999999999999999999999999999999988887653 499999999999432
Q ss_pred CCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 133 ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
....+++..... ..+++++++||++|.|++++|+++.+.+.++
T Consensus 163 ~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 163 QVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 222334333221 2345799999999999999999999987653
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-31 Score=186.18 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=119.8
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
......+||+++|++|||||||+++|.++.+.. +.+|.+... ..+.+.+ +.+.+||++|+++++.++..++.++|+
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 346678999999999999999999999988766 777877333 3344443 678899999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCC--------------CHHHHHHhhcccccCCCc
Q 030122 88 VIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGAL--------------DDAAVSEALELHKIKNRQ 152 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~ 152 (182)
+++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.... ..++..... ...+
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~ 167 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA-----EEIK 167 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH-----HhcC
Confidence 99999999999999997 6877776543 589999999999987521 111111111 1112
Q ss_pred e-EEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 153 W-AIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 153 ~-~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
+ +++++||++|.|++++|+++.+.+.+.
T Consensus 168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 168 AASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 2 699999999999999999999987643
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-31 Score=180.15 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=119.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCcee-eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
...+||+++|++|||||||+++|.++.+.++.||.+.. ...+.+. .+.+.+||++|+++ ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 34689999999999999999999999888777887733 3445553 47889999999987 4567789999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhc--cCCCCCeEEEEeeCCCCCC----CCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 92 VDSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDLPG----ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~p~i~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
||++++.+++.+..|+..+... ....++|+++|+||+|+.. ....++...... ....++++++||++|.|
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGLN 155 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTBT
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccCC
Confidence 9999999999999876554332 2236899999999999842 122333322111 01246799999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++|+++.+.+.+
T Consensus 156 i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 156 VDRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=187.54 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=119.5
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
.+....+||+++|++|+|||||+++|+++.+.. +.+|.+. ....+.+ ..+.+.+||+||++++..++..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 345567999999999999999999999988766 6777773 3445555 3478999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC------C--CCHHHHHHhhcccccCCCceEEEEe
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG------A--LDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+ . ...++.. .+ ....+++++++
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~-~~----~~~~~~~~~~~ 176 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGE-KL----AMTYGALFCET 176 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHH-HH----HHHHTCEEEEC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHH-HH----HHHcCCeEEEe
Confidence 9999999999999999999988775432 35789999999999852 1 1122211 11 11234579999
Q ss_pred cccCCCCHHHHHHHHHHHHhcC
Q 030122 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
||++|.|++++|+++.+.+.++
T Consensus 177 SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHTC-
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999988754
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-32 Score=190.74 Aligned_cols=166 Identities=11% Similarity=0.085 Sum_probs=108.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
....+||+++|++|||||||+++|+++.+.. +.+|.+.. ...+.+ ..+.+.+||+||++++..++..++.++|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3467899999999999999999999988766 66777633 233444 3468999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhh---------cccccCCCce-EEEEe
Q 030122 90 YVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---------ELHKIKNRQW-AIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~ 158 (182)
+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.......+..... .....+..++ +++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 999999999999987 6777775543 679999999999997643221111000 0111112233 79999
Q ss_pred cccCCCCHHHHHHHHHHHHhcCC
Q 030122 159 CAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~~~ 181 (182)
||++|.|++++|+++.+.+.+.+
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999887643
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=181.50 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=118.8
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.+....+||+++|.+|||||||+++|.++.+.. +.+|.+... ..+.+. .+.+.+||+||++++...+..++..+|+
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 345567899999999999999999999888766 666666333 344443 4679999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
+++|||++++.+++.+..|+..+.......++|+++|+||+|+.+. ...++..+... ..+++++++||++|.|+
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPFIETSAKTRQGV 170 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeEEEEeCCCCCCH
Confidence 9999999999999999999888766544458999999999998752 22333322211 12345999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++|+++.+.+.+.
T Consensus 171 ~~l~~~l~~~~~~~ 184 (190)
T 3con_A 171 EDAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=178.69 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=127.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+||+++|++|+|||||++++.+..+.. ..+|.+.. ...+.. ..+.+.+||+||++++...+..++..+|++++||
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 5799999999999999999999888766 66666633 333444 3467899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+... ..+++++++||++|.|++++|+
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-----SYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEEECTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHH
Confidence 999999999999998888766544589999999999987632 2222222211 1234599999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
++.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998865
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=183.08 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=125.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
+...+||+++|++|||||||+++|.++.+.. +.||.+... ..+.+ ..+.+.+||+||++.+..++..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 4457899999999999999999999988876 778877433 23333 4578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCC--------------CCHHHHHHhhcccccCC-Cce
Q 030122 90 YVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKN-RQW 153 (182)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~-~~~ 153 (182)
+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.+. ...++.... .+. ..+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~ 156 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIGAA 156 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH-----HHHcCCc
Confidence 99999999999998 57777775543 58999999999999742 112221111 111 124
Q ss_pred EEEEeccc-CCCCHHHHHHHHHHHHhc
Q 030122 154 AIFKTCAI-KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 154 ~~~~~Sa~-~~~~i~~~~~~l~~~i~~ 179 (182)
+++++||+ +|.|++++|+++.+.+.+
T Consensus 157 ~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 157 TYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 79999999 689999999999998875
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=186.69 Aligned_cols=162 Identities=22% Similarity=0.284 Sum_probs=126.7
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
.+....++|+++|++|+|||||+++|++..+.. ..+|.+ +....+.+.+ +.+.+||+||++.+...+..++..+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 345567899999999999999999999988766 677777 4445555555 78999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 168 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA-----KELGIPFIESSAKNDDN 168 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHH-----HHHTCCEEECBTTTTBS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 9999999999999999999988876643 2579999999999995322 222222111 11124599999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++|+++.+.+.+
T Consensus 169 i~~l~~~l~~~~~~ 182 (213)
T 3cph_A 169 VNEIFFTLAKLIQE 182 (213)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=186.39 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=125.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
......+||+++|++|||||||+++|.+..+.. +.+|.+.... .+.+ ..+.+.+||++|++++..++..+++++|+
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 345567899999999999999999999998876 7788774442 3333 45889999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCC--------------CCHHHHHHhhcccccCC-C
Q 030122 88 VIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKN-R 151 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~-~ 151 (182)
+|+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.+. ...++.... .+. .
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~ 175 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIG 175 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH-----HHHcC
Confidence 9999999999999998 67877775543 58999999999999742 111211111 111 1
Q ss_pred ceEEEEeccc-CCCCHHHHHHHHHHHHhc
Q 030122 152 QWAIFKTCAI-KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 152 ~~~~~~~Sa~-~~~~i~~~~~~l~~~i~~ 179 (182)
.++++++||+ +|.|++++|+++.+.+.+
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 2469999999 689999999999998764
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-32 Score=190.09 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=128.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
+...+||+++|++|||||||+++|+++.+.. +.+|.+.... .+.+ ..+.+.+||+||++. ...+..+++.+|+++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4567899999999999999999999988876 7778774443 3444 357899999999998 778889999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCC-CH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE-GL 166 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i 166 (182)
+|||++++++++.+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|. |+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSACTGEGNI 178 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCTTTCTTCH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH-----HHhCCeEEEECCCcCCcCH
Confidence 999999999999999998888775545689999999999997532 222222111 1124579999999999 99
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++|+++.+.+.++
T Consensus 179 ~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 179 TEIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=186.34 Aligned_cols=158 Identities=11% Similarity=0.086 Sum_probs=124.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|+|||||+++|.++.+.. +.+|.+... ..+.+ ..+.+.+||+||+++++.++..+++++|++|+|
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 87 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 87 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEE
Confidence 56899999999999999999999988766 778887333 33444 447999999999999999999999999999999
Q ss_pred EeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCC----------CHHHHHHhhcccccCCCc-eEEEEec
Q 030122 92 VDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGAL----------DDAAVSEALELHKIKNRQ-WAIFKTC 159 (182)
Q Consensus 92 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~S 159 (182)
||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. ..++..... ...+ .+++++|
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~S 160 (212)
T 2j0v_A 88 FSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR-----KQIGAAAYIECS 160 (212)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH-----HHHTCSEEEECC
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH-----HHcCCceEEEcc
Confidence 9999999999987 6877776543 589999999999986532 111111111 1112 3699999
Q ss_pred ccCCCCHHHHHHHHHHHHhcC
Q 030122 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~~~ 180 (182)
|++|.|++++|+++.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999988754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-32 Score=185.51 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=125.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE-EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|+|||||++++.++.+.. +.+|.+..... +.. ..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 36899999999999999999999988766 77777744333 333 346899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
||++++.+++.+..|+..+.... ...+.|+++|+||+|+.+... ..+.. .+. ...+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE-ALA----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH-HHH----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH-HHH----HHhCCeEEEecCCCCcCHHH
Confidence 99999999998888887776542 225799999999999865432 22221 111 12235799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030122 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 ~~~~l~~~i~~~ 180 (182)
+|+++.+.+.++
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999887654
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=183.02 Aligned_cols=165 Identities=14% Similarity=0.152 Sum_probs=122.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
....+||+++|++|||||||+++|.++.+.. +.+|.+... ..+.+. .+.+.+||+||++++..++..++.++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 3457899999999999999999999988876 667777333 334443 478999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcc---------cccCCCce-EEEEe
Q 030122 90 YVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL---------HKIKNRQW-AIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~ 158 (182)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.....+....... ......+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 99999999999988 56766665532 58999999999999754221111111100 01111222 79999
Q ss_pred cccCCCCHHHHHHHHHHHHhcC
Q 030122 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
||++|.|++++|+++.+.+.+.
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=183.69 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=125.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|+|||||+++|.++.+.. +.+|.+.. ...+.+ ..+.+.+||+||++++..++..+++.+|++++|
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 83 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC 83 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEE
Confidence 46899999999999999999999888766 67777633 233444 456788999999999999999999999999999
Q ss_pred EeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhh---------cccccCCCce-EEEEecc
Q 030122 92 VDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---------ELHKIKNRQW-AIFKTCA 160 (182)
Q Consensus 92 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~Sa 160 (182)
||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.....+..... .....+..+. +++++||
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 84 FSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 9999999999987 6777776543 489999999999987532111111000 0001112233 7999999
Q ss_pred cCCCCHHHHHHHHHHHHhcC
Q 030122 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~~ 180 (182)
++|.|++++|+++.+.+.+.
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCC
T ss_pred CCccCHHHHHHHHHHHHhcc
Confidence 99999999999999988654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=187.37 Aligned_cols=165 Identities=14% Similarity=0.137 Sum_probs=117.0
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeE--EEE---eCCEEEEEEECCCCCCChhhh---hhh
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVE--TVQ---YNNIKFQVWDLGGQTSIRPYW---RCY 81 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~---~~~~~~~i~d~~g~~~~~~~~---~~~ 81 (182)
...++...+||+++|++|||||||++++.+........+.++... ... ...+.+.+||++|+++|.... ..+
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 445677889999999999999999998877533322222222222 222 256899999999999987765 889
Q ss_pred CCCCCEEEEEEeCCCc--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC----HHHHH----HhhcccccCCC
Q 030122 82 FPNTEAVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVS----EALELHKIKNR 151 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~----~~~~~----~~~~~~~~~~~ 151 (182)
++++|++|+|||++++ ++++.+..|+..+.... .++|+++|+||+|+.+... ..++. ..+........
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 9999999999999997 67777777877765432 6899999999999875311 11222 22222222256
Q ss_pred ceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 152 QWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
.++++++||++ .|++++|+.+++.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 78899999999 99999999999875
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=187.39 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=96.7
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcC--CCcc-ccCCCc--eeeEEEEeC----CEEEEEEECCCCCCChhhhhhhCCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMG--EVVS-TIPTIG--FNVETVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~--~~~~-~~~t~~--~~~~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (182)
...++|+++|++|||||||+++|.+. .+.. +.+|.+ +....+.+. .+.+.+||+||++.+..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999988 6665 778877 455566664 67999999999999999999999999
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCC-CC--CHHHHHHhhcccccCCCceEEEEecc
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPG-AL--DDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
|++|+|||++++.+++.+..|+..+..... ..++|+++|+||+|+.+ .. ..++..... +..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEecc
Confidence 999999999999999999999988876543 25899999999999976 22 223332221 122367999999
Q ss_pred cC-CCCHHHHHHHHHHHHhc
Q 030122 161 IK-GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~-~~~i~~~~~~l~~~i~~ 179 (182)
++ |.|++++|+++.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-31 Score=184.68 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=126.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE-EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
...++|+++|++|||||||+++|.++.+.. +.+|.+..... +.. ..+.+.+||+||++++..++..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 346899999999999999999999988876 67777744333 333 35689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA-VA----QEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH-HH----HHHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH-HH----HHhCCeEEEEecCCCCCHHH
Confidence 9999999999988888776655321 2578999999999997532 2222221 11 12235799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030122 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 ~~~~l~~~i~~~ 180 (182)
+|+++.+.+.++
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-31 Score=185.76 Aligned_cols=162 Identities=13% Similarity=0.145 Sum_probs=123.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce-eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF-NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
....+||+++|++|||||||+++++++.+.. +.+|.+. ....+.+ ..+.+.+||+||++++..++..+++++|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4567899999999999999999999888876 6677662 2333344 4567779999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcc---------cccCC-CceEEEEe
Q 030122 90 YVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL---------HKIKN-RQWAIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~ 158 (182)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.....+....... ...+. ...+++++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 999999999999997 6777765543 68999999999999764322111111100 11111 22469999
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 030122 159 CAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i 177 (182)
||++|.|++++|+++.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998864
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=184.07 Aligned_cols=163 Identities=20% Similarity=0.223 Sum_probs=121.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeC---CEEEEEEECCCCCCChh-hhhhhCCCCCEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYN---NIKFQVWDLGGQTSIRP-YWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~i~ 90 (182)
...+||+++|++|+|||||+++|+++.+....++.+.....+.+. .+.+.+|||||+++++. ++..+++++|++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 346899999999999999999999998877445555555556664 78999999999999988 88889999999999
Q ss_pred EEeCCCcc-hHHHHHHHHHHHHhc--cCCCCCeEEEEeeCCCCCCCCCHHHHHHhhc-----------------------
Q 030122 91 VVDSSDTD-RIQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALDDAAVSEALE----------------------- 144 (182)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~----------------------- 144 (182)
|||+++.. ++.....++..++.. ....++|+++|+||+|+......+.+.+.+.
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~ 164 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 164 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence 99999854 466666666655433 1235799999999999987655433322211
Q ss_pred ccccC---------C--CceEEEEecccCC------CCHHHHHHHHHHHH
Q 030122 145 LHKIK---------N--RQWAIFKTCAIKG------EGLFEGMDWLSNTL 177 (182)
Q Consensus 145 ~~~~~---------~--~~~~~~~~Sa~~~------~~i~~~~~~l~~~i 177 (182)
..... . ..+++++|||++| .|++++|++|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00111 1 1788999999999 99999999998753
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=182.73 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=113.7
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
...+||+++|++|+|||||++++.++.+.. +.+|.+.... .+.. ..+.+.+||+||+++++.++..+++++|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 346899999999999999999999888766 6777662221 1222 45678899999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCC------------HHHHHHhhcccccCCCc-eEEE
Q 030122 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALD------------DAAVSEALELHKIKNRQ-WAIF 156 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 156 (182)
|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+... .++.. .+ ....+ .+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~-~~----~~~~~~~~~~ 158 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE-EL----KKLIGAPAYI 158 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH-HH----HHHHTCSEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHH-HH----HHHcCCCEEE
Confidence 99999999999987 5777775543 4899999999999865321 11111 11 11112 3699
Q ss_pred EecccCCCCHHHHHHHHHHHHhc
Q 030122 157 KTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
++||++|.|++++|+++.+.+.+
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 159 ECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999988753
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-32 Score=189.18 Aligned_cols=158 Identities=20% Similarity=0.273 Sum_probs=121.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....+||+++|++|||||||+++|.+..+.. ..++.+ +....+.+.+ +.+.+||+||++.+..++..+++++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 3557899999999999999999999988776 556655 5555566644 7899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-----HHHHHHhhcccccCCCceEEEEecccCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-----DAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... ...+.. ..+++++++||++|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~--------~~~~~~~~vSA~~g 180 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD--------SLGIPFLETSAKNA 180 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHH--------TTTCCBCCCCC---
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHH--------HcCCeEEEEECCCC
Confidence 99999999999999999988885543 35899999999999975421 122222 23456999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++|+++.+.+.++
T Consensus 181 ~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=184.06 Aligned_cols=163 Identities=12% Similarity=0.131 Sum_probs=118.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC--CCcc-ccCCCceeeEEEEe-------CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG--EVVS-TIPTIGFNVETVQY-------NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~--~~~~-~~~t~~~~~~~~~~-------~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
++||+++|++|||||||+++|++. .+.. +.+|++.+.....+ ..+.+.+||++|++++..+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 4444 78888866554432 4678999999999999888899999999
Q ss_pred EEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCce----EEEEeccc
Q 030122 87 AVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW----AIFKTCAI 161 (182)
Q Consensus 87 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~ 161 (182)
++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+................+..++ .++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 57999999998876543 5799999999999975322211111111122222333 49999999
Q ss_pred CCC-CHHHHHHHHHHHHhcCC
Q 030122 162 KGE-GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 162 ~~~-~i~~~~~~l~~~i~~~~ 181 (182)
+|. |++++++.+.+.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC-
T ss_pred cCchhHHHHHHHHHHHHhccc
Confidence 997 99999999998887643
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=171.62 Aligned_cols=161 Identities=19% Similarity=0.084 Sum_probs=121.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
....++|+++|++|||||||+++|.+..+.. ..++.+ +....+.+.+..+.+|||||++++..++..++..+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 3456899999999999999999999988766 444443 5556677788899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-c-cCCC--ceEEEEecccCCCCH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-K-IKNR--QWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~~Sa~~~~~i 166 (182)
|+|+++....+.. .++..+. ..++|+++|+||+|+.+. ..+++...+... . .... .++++++||++|.|+
T Consensus 85 v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 85 VVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 9999885332222 2222222 257899999999999864 333333333211 1 1222 378999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++|+++.+.+...
T Consensus 159 ~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 159 DHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999987754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=178.71 Aligned_cols=159 Identities=12% Similarity=0.027 Sum_probs=116.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCC--CccccCCCc--eeeEEEEeC--CEEEEEEECCCCCC-ChhhhhhhCCCCCE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGE--VVSTIPTIG--FNVETVQYN--NIKFQVWDLGGQTS-IRPYWRCYFPNTEA 87 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~--~~~~~~t~~--~~~~~~~~~--~~~~~i~d~~g~~~-~~~~~~~~~~~~~~ 87 (182)
...+||+++|++|||||||+++|++.. +....++++ +....+.+. .+.+.+|||+|.+. ++.++..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 346899999999999999999999633 333223344 334455554 35678999999876 55677778888999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++++|+.+..|+..+.......++|+++|+||+|+..... .++. ..+ ....+++++++||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~----a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAX----AVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHH----HHHhCCceEEeccccCCC
Confidence 999999999999999999988776543345799999999999864322 2221 111 112235699999999999
Q ss_pred HHHHHHHHHHHHh
Q 030122 166 LFEGMDWLSNTLK 178 (182)
Q Consensus 166 i~~~~~~l~~~i~ 178 (182)
++++|+++++.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=187.96 Aligned_cols=157 Identities=14% Similarity=0.100 Sum_probs=117.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChh---hhhhhCCCCCEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---YWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~~~~i~v 91 (182)
||+++|+.|||||||++++.++.+.. ..||+++....+. ..+++++|||+|+++|+. .+..|+++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 69999999999999999988665432 5788887776653 458999999999999974 468899999999999
Q ss_pred EeCCCc--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhcccccC----CCceEEEEeccc
Q 030122 92 VDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHKIK----NRQWAIFKTCAI 161 (182)
Q Consensus 92 ~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~Sa~ 161 (182)
||++++ +.++.+..|+..+... .+++|+++++||+|+...... .++....+...++ ..++.+++|||+
T Consensus 80 ~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 2233333334433332 368999999999999764321 2344444334343 257899999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030122 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~ 179 (182)
+ .++.++|..+++.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5999999999876654
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-31 Score=187.62 Aligned_cols=162 Identities=14% Similarity=0.166 Sum_probs=124.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
....+||+++|++|+|||||+++|.++.+.. +.+|.+.. ...+.+ ..+.+.+||+||++++...+..+++++|+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 3567899999999999999999999888766 56666522 222233 4577889999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH---------HHHHhhcccccCCCce-EEEEe
Q 030122 90 YVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDA---------AVSEALELHKIKNRQW-AIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~ 158 (182)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+..... .+.........+..++ +++++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 999999999999887 6766664432 489999999999997543211 1111222222333444 79999
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 030122 159 CAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i 177 (182)
||++|.|++++|+++.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998765
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=174.33 Aligned_cols=163 Identities=14% Similarity=0.044 Sum_probs=113.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCC------CCCh---hhhhhhC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQ------TSIR---PYWRCYF 82 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~------~~~~---~~~~~~~ 82 (182)
...++|+++|++|||||||+++|++..+.. ...|..+....+.+....+.+|||||+ ++.. ..+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 457899999999999999999999887753 222444555666667899999999998 3321 1233457
Q ss_pred CCCCEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCC--ceEEEEe
Q 030122 83 PNTEAVIYVVDSSDTDRIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNR--QWAIFKT 158 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (182)
..+|++++|||++++.++. ....|+..+... ..+.|+++|+||+|+.+................... .++++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 7899999999999987764 334566666443 248999999999999764332111111111111112 2679999
Q ss_pred cccCCCCHHHHHHHHHHHHhc
Q 030122 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
||++|.|++++|+++.+.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=162.82 Aligned_cols=147 Identities=24% Similarity=0.199 Sum_probs=109.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCC--CceeeEEEEeCCEEEEEEECCCCCCCh------hhhhhhCC--CC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPT--IGFNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP--NT 85 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t--~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~~ 85 (182)
.++|+++|++|+|||||+++|.+..+.. ..|+ .......+.+.+..+.+|||||++++. .+...++. ++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 5799999999999999999999876543 3343 334455666778999999999998875 34455664 79
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC----CHHHHHHhhcccccCCCceEEEEeccc
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
|++++|+|+++.+ ....|+..+.. .+.|+++|+||+|+.... ..+.+.+.++ ++++++||+
T Consensus 83 ~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA~ 147 (165)
T 2wji_A 83 DLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSAA 147 (165)
T ss_dssp SEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBGG
T ss_pred CEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEcC
Confidence 9999999998754 34456666544 478999999999975321 2233443332 359999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030122 162 KGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~ 178 (182)
+|.|++++|+++.+.+.
T Consensus 148 ~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 148 KKMGIEELKKAISIAVK 164 (165)
T ss_dssp GTBSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999998764
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=180.86 Aligned_cols=161 Identities=15% Similarity=0.111 Sum_probs=123.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC--Ccc--ccCCCceeeEEEEe-CCEEEEEEECCCCCCC-----hhhhhhhCCCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE--VVS--TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI-----RPYWRCYFPNTE 86 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~--~~~--~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~-----~~~~~~~~~~~~ 86 (182)
.+||+++|++|||||||+++++++. +.. +.+|.+.....+.+ .++.+.+||+||++++ ..++..+++++|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad 82 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ 82 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence 5799999999999999999999873 322 78899888888776 7899999999999988 678888999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCCHHH---HHHhhcccccCCC---ceEEEEec
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAA---VSEALELHKIKNR---QWAIFKTC 159 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~S 159 (182)
++|+|||++++.+++.+..|...+.... ...++|+++|+||+|+.+.....+ +............ .++++++|
T Consensus 83 ~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tS 162 (307)
T 3r7w_A 83 VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTS 162 (307)
T ss_dssp EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECC
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEee
Confidence 9999999999999998876644433211 126899999999999985211210 1111112222222 37899999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 030122 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~ 178 (182)
|++ .|+.++|..+++.+.
T Consensus 163 a~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 163 IWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp TTS-SHHHHHHHHHHHTTC
T ss_pred ecC-ChHHHHHHHHHHHHc
Confidence 999 899999999887553
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-28 Score=170.83 Aligned_cols=161 Identities=12% Similarity=0.041 Sum_probs=109.0
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCC----------CCCChhhh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGG----------QTSIRPYW 78 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~ 78 (182)
.+....++|+++|++|+|||||+++|++..+.. ..++.+ ........ +..+.+||||| ++.+..++
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 345567899999999999999999999887544 444444 22222233 23799999999 55566667
Q ss_pred hhhCCCC---CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEE
Q 030122 79 RCYFPNT---EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 79 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
..++..+ |++++|+|+++..++.... ++..+.. .+.|+++|+||+|+.+.....................++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 7777666 9999999999887776542 1122211 578999999999998754443222222111112346789
Q ss_pred EEecccCCCCHHHHHHHHHHHHh
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+++||++|.|++++|+++.+.+.
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998875
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-29 Score=182.36 Aligned_cols=162 Identities=9% Similarity=0.012 Sum_probs=117.0
Q ss_pred CCcceeEEEEEecC---------CCChHHHHHHhhc---CCCcc-ccCCC-cee--eEE----------------EEeCC
Q 030122 13 PPCTHVLGFSFFID---------NFGNLCDTDRLQM---GEVVS-TIPTI-GFN--VET----------------VQYNN 60 (182)
Q Consensus 13 ~~~~~~~i~viG~~---------~~GKssl~~~l~~---~~~~~-~~~t~-~~~--~~~----------------~~~~~ 60 (182)
.....+||+++|.+ |||||||+++|++ ..+.. +.+|+ +.+ ... +....
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35567899999999 9999999999998 44443 55543 311 111 12256
Q ss_pred EEEEEEE-----------------------CCCCCCChhhhhhhCC---------------------CCCEEEEEEeCCC
Q 030122 61 IKFQVWD-----------------------LGGQTSIRPYWRCYFP---------------------NTEAVIYVVDSSD 96 (182)
Q Consensus 61 ~~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~ 96 (182)
+.+.+|| ++|+++++.++..++. ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 7899999 7777878778888887 7999999999999
Q ss_pred c--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 97 T--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 97 ~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+ .+|+.+..|+..+.......++|+++|+||+|+......++.. .+.. ....++++++||++|.|++++|+++.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~-~~~~---~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAH-TFAL---SKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHH-HHHH---TSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHH-HHHH---hcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 8 9999999999888765333689999999999986432222111 1111 11345799999999999999999999
Q ss_pred HHHh
Q 030122 175 NTLK 178 (182)
Q Consensus 175 ~~i~ 178 (182)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=169.90 Aligned_cols=161 Identities=22% Similarity=0.134 Sum_probs=112.1
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEE-eCCEEEEEEECCC----------CCCChhhhhh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQ-YNNIKFQVWDLGG----------QTSIRPYWRC 80 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~d~~g----------~~~~~~~~~~ 80 (182)
.++...+||+++|++|||||||+++|++.......++.+....... ..+..+.+||||| ++.+..++..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 4456678999999999999999999999886555555553222211 1345688999999 4455666666
Q ss_pred hCCCC---CEEEEEEeCCCcchH--HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEE
Q 030122 81 YFPNT---EAVIYVVDSSDTDRI--QTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 81 ~~~~~---~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
+++.+ |++++|+|.++..+. ..+..|+.. .+.|+++|+||+|+.+........+...........+++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence 66554 999999998876443 333344333 378999999999998654443332222111112234579
Q ss_pred EEecccCCCCHHHHHHHHHHHHhc
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
+++||++|.|++++|+++.+.+.+
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEEecCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999998865
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=164.21 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=112.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh--------hhhhCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFPN 84 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~~ 84 (182)
..+|+++|++|||||||+++|.+..... ...|..+....+.+.+..+.+|||||++++... ...++++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 83 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999876432 222334555667778888999999998764321 1235789
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++++|+|++++.+++ ...|+..+.... ..++|+++|+||+|+.+.. .........+++++||++|.
T Consensus 84 ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 84 ADRVLFMVDGTTTDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGET----------LGMSEVNGHALIRLSARTGE 151 (172)
T ss_dssp CSEEEEEEETTTCCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCCC----------CEEEEETTEEEEECCTTTCT
T ss_pred CCEEEEEEECCCCCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcch----------hhhhhccCCceEEEeCCCCC
Confidence 99999999999988876 346666665432 3579999999999985421 11122245689999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+++.+.+..
T Consensus 152 gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 152 GVDVLRNHLKQSMGF 166 (172)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999987654
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=177.81 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=123.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..++|+++|.+|+|||||+++++++.+.. +.+|.+.. ...+... .+.+.+||+||++++...+..++..+|++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 35899999999999999999999888766 77777632 3334443 45667999999999999999999999999999
Q ss_pred EeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhh---------cccccCCCce-EEEEecc
Q 030122 92 VDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---------ELHKIKNRQW-AIFKTCA 160 (182)
Q Consensus 92 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~Sa 160 (182)
||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.....+..... .....+..++ +++++||
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999999987 6766665543 489999999999986532111111000 0001112233 7999999
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 030122 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~ 179 (182)
++|.|++++|+++.+.+..
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999998865
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=167.04 Aligned_cols=158 Identities=17% Similarity=0.218 Sum_probs=124.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..++|+++|++|||||||++++.+..+.. +.||.+.. ...+.+.+ +.+.+||++|+++++..+..++..++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 45899999999999999999999988766 67777643 44555644 678899999999998888889999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|+|+++..+++.+..|+..+... ...+.|+++++||+|+.+.. ..++.. .+ .....+.++++|++++.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~-~l----~~~~~~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEAR-AF----AEKNNLSFIETSALDSTNVEE 157 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHH-HH----HHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999888888776543 23578999999999996532 222222 11 123346799999999999999
Q ss_pred HHHHHHHHHhc
Q 030122 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 ~~~~l~~~i~~ 179 (182)
+|+++.+.+.+
T Consensus 158 l~~~l~~~~~~ 168 (199)
T 2f9l_A 158 AFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987753
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-29 Score=171.74 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=116.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCC-----------CCCChhhhhhhCCC-
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGG-----------QTSIRPYWRCYFPN- 84 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~~~~- 84 (182)
+||+++|++|||||||++++.+..+.. +.|+.......+.+. .+.+||||| ++.++..+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999988766 566666555555555 789999999 45566677777776
Q ss_pred CCEEEEEEeCCCcchHHHH-HHHHHH--------HHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCce
Q 030122 85 TEAVIYVVDSSDTDRIQTA-KEEFHA--------ILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (182)
++++++|+++.+..++..+ ..|... +.......++|+++|+||+|+.... ..+++...++... .....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence 7777777777778888776 444432 2222222579999999999998643 1233344443311 11134
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHhcCC
Q 030122 154 AIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 181 (182)
+++++||++|.|++++|+++.+.+.+.+
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 5899999999999999999999887654
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=159.22 Aligned_cols=147 Identities=20% Similarity=0.147 Sum_probs=105.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCC-------ChhhhhhhCCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYFPNTE 86 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~~~~~ 86 (182)
.||+++|++|+|||||++++.+..+.. ...+.......+...+..+.+||+||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 589999999999999999999887542 22233355556666788999999999887 3445677889999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCce-EEEEecccCCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW-AIFKTCAIKGEG 165 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (182)
++++|+|.++..+... .++...+.. .+.|+++|+||+|+.+.. ++. ..+ . ..++ +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~-~~~----~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LYL-GPL----Y-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GGC-GGG----G-GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--HhH-HHH----H-hCCCCCeEEEecccCCC
Confidence 9999999988644322 233333332 478999999999997531 111 111 1 1222 589999999999
Q ss_pred HHHHHHHHHHHH
Q 030122 166 LFEGMDWLSNTL 177 (182)
Q Consensus 166 i~~~~~~l~~~i 177 (182)
++++|+++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998865
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-27 Score=161.38 Aligned_cols=152 Identities=23% Similarity=0.190 Sum_probs=116.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCCh------hhhhhhCC-
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP- 83 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~- 83 (182)
+...++|+++|++|||||||+++|++..+.. ..++.. .....+.+.+..+.+|||||++.+. .++..++.
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 3456899999999999999999999876544 444444 4555666688999999999998875 34566664
Q ss_pred -CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC----CCHHHHHHhhcccccCCCceEEEEe
Q 030122 84 -NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 84 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.++++++|+|.++ ++....|+..+.. .+.|+++|+||+|+... ...+++.+.++ ++++++
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~ 148 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPL 148 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEEC
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEE
Confidence 5899999999764 5666677776654 57899999999998532 12334444433 359999
Q ss_pred cccCCCCHHHHHHHHHHHHhcC
Q 030122 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
||++|.|++++|+++.+.+.+.
T Consensus 149 Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 149 SAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp BGGGTBSHHHHHHHHHHHHTTC
T ss_pred EecCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999988754
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=172.77 Aligned_cols=137 Identities=24% Similarity=0.375 Sum_probs=112.6
Q ss_pred ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC----------CcchHHHHHHHHHHHHhcc
Q 030122 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~ 114 (182)
+.||+|+....+.++++.+++||++|+++++.+|..|+++++++|+|||++ +.+++.+...|+..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 467888888888899999999999999999999999999999999999654 7789999999999998887
Q ss_pred CCCCCeEEEEeeCCCCCCC------------------CCHHHHHHh----h-cccccCCCceEEEEecccCCCCHHHHHH
Q 030122 115 ELKGAVALIFANKQDLPGA------------------LDDAAVSEA----L-ELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 115 ~~~~~p~i~v~nK~D~~~~------------------~~~~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
...++|+++++||+|+... ...++..+. + .......+.+.+++|||+++.||+++|.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 7789999999999998541 222222211 1 1222345678999999999999999999
Q ss_pred HHHHHHhcCC
Q 030122 172 WLSNTLKSGG 181 (182)
Q Consensus 172 ~l~~~i~~~~ 181 (182)
.+.+.+.+.+
T Consensus 311 ~v~~~Il~~~ 320 (327)
T 3ohm_A 311 AVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999887643
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=163.26 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=124.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....++|+++|++|||||||++++.+..+.. +.+|.+.. ...+.+.+ +.+.+||++|.+++...+..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 3456899999999999999999999988766 77888744 44555544 5667899999999999899999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++|+|.++..+++.+..|+..+... ...+.|+++++||+|+.+.. ..++ ...+. ....+.++++|++++.|+
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~-a~~l~----~~~~~~~ld~Sald~~~v 179 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDE-ARAFA----EKNGLSFIETSALDSTNV 179 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHH-HHHHH----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHH-HHHHH----HHcCCEEEEEeCCCCCCH
Confidence 9999999999998888888766443 23578999999999986532 2222 22221 233467999999999999
Q ss_pred HHHHHHHHHHH
Q 030122 167 FEGMDWLSNTL 177 (182)
Q Consensus 167 ~~~~~~l~~~i 177 (182)
+++|+++.+.+
T Consensus 180 ~~l~~~l~~~i 190 (191)
T 1oix_A 180 EAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=174.96 Aligned_cols=135 Identities=22% Similarity=0.394 Sum_probs=110.7
Q ss_pred cCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhccC
Q 030122 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEE 115 (182)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 115 (182)
.+|+|+....+.++.+.+.+||++|+++++.+|..++++++++|+|||+++ .+++++...|+..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 467888888888899999999999999999999999999999999999998 6789999999999988766
Q ss_pred CCCCeEEEEeeCCCCCC-----------------CCCHHHHHHhhc-----cccc-CCCceEEEEecccCCCCHHHHHHH
Q 030122 116 LKGAVALIFANKQDLPG-----------------ALDDAAVSEALE-----LHKI-KNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 116 ~~~~p~i~v~nK~D~~~-----------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
..++|+++++||+|+.. ....++...... +... ..+.+.+++|||++|.|++++|++
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 78899999999999852 123333322221 1111 246788999999999999999999
Q ss_pred HHHHHhcC
Q 030122 173 LSNTLKSG 180 (182)
Q Consensus 173 l~~~i~~~ 180 (182)
+.+.+.+.
T Consensus 338 v~~~i~~~ 345 (353)
T 1cip_A 338 VTDVIIKN 345 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=164.88 Aligned_cols=149 Identities=19% Similarity=0.161 Sum_probs=113.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChhh------hhhhC--C
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--P 83 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~ 83 (182)
...++|+++|++|||||||+++|++..+.. ..|... .....+.+.+..+.+|||||+..+... ...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 456899999999999999999999877644 334333 444455557899999999999887653 24555 5
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC----CCHHHHHHhhcccccCCCceEEEEec
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+|++++|+|+++.++. ..|+..+.. .++|+++|+||+|+... .....+...++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 89999999999987653 345555544 47999999999998532 12344444443 4599999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 030122 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~ 178 (182)
|++|.|++++|+++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998775
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-26 Score=168.41 Aligned_cols=162 Identities=14% Similarity=0.036 Sum_probs=119.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeC-CEEEEEEECCCCCCCh----------h
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIR----------P 76 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~----------~ 76 (182)
.++...-.|+++|.+|||||||+|+|++..+.. ...|........... +..+.+|||||+.... .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 345566799999999999999999999988754 222222333444556 8999999999987654 4
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC-CCCCHHHHHHhhcccccCCCceEE
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP-GALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
.+..++..+|++++|+|+++..++.....|+..+.. .+.|+++|+||+|+. +.....+....+.... ....++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i 158 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEI 158 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeE
Confidence 566778899999999999999888887777766644 478999999999997 3322223222221111 122459
Q ss_pred EEecccCCCCHHHHHHHHHHHHhc
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
+.+||++|.|++++|+++.+.+.+
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcc
Confidence 999999999999999999988754
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=169.88 Aligned_cols=133 Identities=25% Similarity=0.351 Sum_probs=100.5
Q ss_pred CCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhccCC
Q 030122 47 PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (182)
+|+|+....+.++++.+.+|||+|+++++..|..++++++++|+|||+++ .+++.+...|+..+......
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 45667777778889999999999999999999999999999999999999 78999999999999887667
Q ss_pred CCCeEEEEeeCCCCCC-----------------C-CCHHHHHHhh-----cccccC-CCceEEEEecccCCCCHHHHHHH
Q 030122 117 KGAVALIFANKQDLPG-----------------A-LDDAAVSEAL-----ELHKIK-NRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 117 ~~~p~i~v~nK~D~~~-----------------~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
.++|+++++||+|+.. . ...++..... .+.... .+.+.+++|||+++.|++++|++
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 8899999999999852 1 3333333221 111111 45678999999999999999999
Q ss_pred HHHHHhc
Q 030122 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~i~~ 179 (182)
+.+.+.+
T Consensus 347 v~~~i~~ 353 (362)
T 1zcb_A 347 VKDTILH 353 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-26 Score=169.04 Aligned_cols=135 Identities=26% Similarity=0.375 Sum_probs=109.2
Q ss_pred ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC----------CcchHHHHHHHHHHHHhcc
Q 030122 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~ 114 (182)
+.+|+|+....+.++++.+++||++|+++++.+|..|+++++++|+|||++ +.+++.+...|+..+....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 345778888888889999999999999999999999999999999999998 7899999999999999887
Q ss_pred CCCCCeEEEEeeCCCCCCC-----------------CCHHHHH----Hhh-------cccccCC-----------CceEE
Q 030122 115 ELKGAVALIFANKQDLPGA-----------------LDDAAVS----EAL-------ELHKIKN-----------RQWAI 155 (182)
Q Consensus 115 ~~~~~p~i~v~nK~D~~~~-----------------~~~~~~~----~~~-------~~~~~~~-----------~~~~~ 155 (182)
...++|+++++||+|+... ...++.. ..+ .+..... +.+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 7789999999999998531 1222221 111 1111112 56899
Q ss_pred EEecccCCCCHHHHHHHHHHHHhc
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
++|||+++.+++.+|..+.+.+.+
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=164.99 Aligned_cols=163 Identities=14% Similarity=0.024 Sum_probs=108.6
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCC-cccc----CCCceeeEEEE-eCCEEEEEEECCCCCC----------Ch
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEV-VSTI----PTIGFNVETVQ-YNNIKFQVWDLGGQTS----------IR 75 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~-~~~~----~t~~~~~~~~~-~~~~~~~i~d~~g~~~----------~~ 75 (182)
.+....++|+++|.+|+|||||+++|++... .... .|.......+. ..+..+.+|||||... +.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 4455678999999999999999999998873 2222 22223333333 2568899999999533 24
Q ss_pred hhhhhhCCC---CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc----
Q 030122 76 PYWRCYFPN---TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI---- 148 (182)
Q Consensus 76 ~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~---- 148 (182)
.++..++.. +|++++|+|.++..+.. ...++..+.. .+.|+++|+||+|+.+..........+.....
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 444455544 78899999998754422 2233333332 57899999999999864332222111111100
Q ss_pred --CCCceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 149 --KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 149 --~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
.....+++++||++|.|++++|++|.+.+..
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 1356789999999999999999999988764
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-26 Score=164.43 Aligned_cols=144 Identities=15% Similarity=0.112 Sum_probs=109.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChh----------hhhhhC--
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRP----------YWRCYF-- 82 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~-- 82 (182)
.+|+++|.+|||||||+|+|.+..... ..|+.. .....+.+.+..+.+|||||...+.. .+..++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 389999999999999999999886544 334433 55556666888999999999988764 456666
Q ss_pred CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC----CHHHHHHhhcccccCCCceEEEEe
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.++|++|+|+|+++.++...+..+ +.. .+.|+++|+||+|+.... ....+...++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 899999999999986555444333 322 479999999999985432 2334444443 459999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 030122 159 CAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~ 176 (182)
||++|.|++++|+++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999875
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=178.65 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=112.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEE--------e----CCEEEEEEECCCCCCChhhhh
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQ--------Y----NNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~--------~----~~~~~~i~d~~g~~~~~~~~~ 79 (182)
.+...+||+++|.+|||||||++++.+..+.. ..+|++.+..+.. + ..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 35677999999999999999999999988876 8888886666442 1 368999999999999999999
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++++|++|+|+|+++.+ ....|+..+.... .+.|+++|+||+|+.+... .+++..... ..++++++
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~ 186 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHR 186 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEE
T ss_pred HHccCCcEEEEEEeCCCch---hHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEE
Confidence 9999999999999987654 4556666665543 4799999999999976433 333333322 22345999
Q ss_pred ecccCCCCHHHHHHHHHHHHhcC
Q 030122 158 TCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
+||++|.|++++++++.+.+.+.
T Consensus 187 vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 187 ISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CCC-----CTTHHHHHHHHHTCT
T ss_pred EecCcccCHHHHHHHHHHHHhcc
Confidence 99999999999999999988654
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-25 Score=162.56 Aligned_cols=155 Identities=14% Similarity=-0.015 Sum_probs=111.0
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc-eeeEEEEeCCEEEEEEECCCCCC--------ChhhhhhhC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG-FNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~-~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 82 (182)
.+..+|+++|.+|+|||||+|+|++..+.. ...|.. .....+...+..+.+|||||..+ +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 345689999999999999999999988754 222222 22233445789999999999876 344566788
Q ss_pred CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEeccc
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+.+|++++|+|++++.+.. ..|+...+... ..+.|+++|+||+|+..... ..+....+ ....+++++||+
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~ 155 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSAL 155 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTT
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCC
Confidence 9999999999998875543 34443333322 14799999999999975432 22222222 122469999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030122 162 KGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~ 178 (182)
+|.|++++++++.+.+.
T Consensus 156 ~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 156 DERQVAELKADLLALMP 172 (301)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 99999999999987653
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-26 Score=165.27 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=109.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChh----------hhhhhC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRP----------YWRCYF 82 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~ 82 (182)
+.++|+++|.+|||||||+|+|.+..+.. ..|+.. .....+.+.+..+.+|||||+..+.. .+..++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 35899999999999999999999887543 334333 44555666778999999999988762 233333
Q ss_pred --CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC----CHHHHHHhhcccccCCCceEEE
Q 030122 83 --PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 83 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
..+|++++|+|+++.++...+..++. . .++|+++|+||+|+.+.. ..+.+.+.++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLL---E----LGIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHH---H----HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHH---h----cCCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 68999999999988655444444333 2 278999999999986432 2334444443 4599
Q ss_pred EecccCCCCHHHHHHHHHHHHh
Q 030122 157 KTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++||++|.|++++|+++.+.+.
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987654
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=163.40 Aligned_cols=147 Identities=18% Similarity=0.133 Sum_probs=107.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeC-CEEEEEEECCCCCCCh------hhhhhhCC--CCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIR------PYWRCYFP--NTE 86 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~------~~~~~~~~--~~~ 86 (182)
.++|+++|++|||||||+++|++..... ..|...+......+. +..+.+|||||++.+. .++..++. ++|
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d 82 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRAD 82 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCC
Confidence 4799999999999999999999875332 334333333333333 6789999999999876 34555664 699
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC----CCHHHHHHhhcccccCCCceEEEEecccC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++|+|+++.++. ..|...+.. .++|+++|+||+|+... .....+...++ ++++++||++
T Consensus 83 ~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA~~ 147 (272)
T 3b1v_A 83 SILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSALK 147 (272)
T ss_dssp EEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBTTT
T ss_pred EEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEccC
Confidence 99999999875443 445555544 57999999999997532 22344444443 4599999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030122 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~ 178 (182)
|.|++++|+++.+.+.
T Consensus 148 g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 148 QTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TBSHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988654
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-25 Score=168.10 Aligned_cols=121 Identities=22% Similarity=0.369 Sum_probs=93.5
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC----------CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 128 (182)
+.+.+.+|||+|+++++.+|..++++++++|+|||++ +.++|+....|+..+.......++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3588999999999999999999999999999999998 789999999999999887666789999999999
Q ss_pred CCCCCC----C-------------------HHHHHHhhccc-------c-c---CCCceEEEEecccCCCCHHHHHHHHH
Q 030122 129 DLPGAL----D-------------------DAAVSEALELH-------K-I---KNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 129 D~~~~~----~-------------------~~~~~~~~~~~-------~-~---~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
|+.... . .++........ . . ..+.+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 974210 0 11111110100 0 0 12456789999999999999999999
Q ss_pred HHHhc
Q 030122 175 NTLKS 179 (182)
Q Consensus 175 ~~i~~ 179 (182)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=174.54 Aligned_cols=160 Identities=16% Similarity=0.030 Sum_probs=115.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCC----------CCChhhhh-
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQ----------TSIRPYWR- 79 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~- 79 (182)
...+||+++|.+|+|||||+|+|++..... ...|.......+.+.+..+.+|||||+ +.|..+..
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 356899999999999999999999887642 222333445566778889999999997 33433332
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++|+|+++..++++. .|+..+.. .+.|+++|+||+|+.+... .+++.+.+.........+++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 477889999999999998888775 45555543 5799999999999976543 2333333322222234567999
Q ss_pred ecccCCCCHHHHHHHHHHHHhc
Q 030122 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
+||++|.|++++|+.+.+.+.+
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887764
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-24 Score=154.93 Aligned_cols=150 Identities=20% Similarity=0.134 Sum_probs=114.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChh------hhhhhC--CCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNT 85 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~~~ 85 (182)
.++|+++|++|||||||+++|.+..+.. ..++.+ .....+.+.+..+.+||+||+..+.. .+..++ .++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 4799999999999999999999887644 444444 44555666888999999999988766 555666 689
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC----CCCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG----ALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
|++++|+|.++. +....|+..+... ...|+++|+||+|+.+ ......+.+.++ ++++++||+
T Consensus 83 d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa~ 148 (271)
T 3k53_A 83 DVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNAK 148 (271)
T ss_dssp SEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBGG
T ss_pred cEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEeC
Confidence 999999998875 3444455555443 2399999999999643 123445555554 359999999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030122 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~~ 180 (182)
+|.|++++|+++.+.+...
T Consensus 149 ~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 149 KGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GTBTHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999887643
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=168.01 Aligned_cols=151 Identities=18% Similarity=0.109 Sum_probs=98.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhh--------hhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~~~ 83 (182)
..++|+++|.+|+|||||+|+|.+..... ...|..+....+.+.+..+.+|||||+..+...+ ..++.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 35789999999999999999999876322 2233345566777789999999999987765433 34678
Q ss_pred CCCEEEEEEeCCCcchHHH---HHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecc
Q 030122 84 NTEAVIYVVDSSDTDRIQT---AKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
.+|++++|+|++++.+++. ...|+..+ .+.|+++|+||+|+.+...... +.+... ...+++++||
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSA 379 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISA 379 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBT
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEE
Confidence 9999999999999888753 33333332 3799999999999986543321 111110 0135999999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q 030122 161 IKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~ 178 (182)
++|.|++++++++.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999999886
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-25 Score=167.71 Aligned_cols=132 Identities=26% Similarity=0.372 Sum_probs=104.0
Q ss_pred CCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhccCCC
Q 030122 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEELK 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (182)
|+|+....+.+.++.+.+|||+|+++++.+|..|+++++++|+|||+++ .++|+.+..|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5556666677788999999999999999999999999999999999999 899999999999998876667
Q ss_pred CCeEEEEeeCCCCCCCC-----------------------------C--HHHHHHhhccc----c-----cCCCceEEEE
Q 030122 118 GAVALIFANKQDLPGAL-----------------------------D--DAAVSEALELH----K-----IKNRQWAIFK 157 (182)
Q Consensus 118 ~~p~i~v~nK~D~~~~~-----------------------------~--~~~~~~~~~~~----~-----~~~~~~~~~~ 157 (182)
++|++||+||+|+.... . ..+....+... . .....+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 89999999999974210 0 01111111000 0 0124678899
Q ss_pred ecccCCCCHHHHHHHHHHHHhc
Q 030122 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
|||+++.||+++|.++.+.+.+
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887764
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-26 Score=164.23 Aligned_cols=118 Identities=21% Similarity=0.177 Sum_probs=96.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCC----C
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN----T 85 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~ 85 (182)
....++|+++|++|+|||||+++|.+..+.. +.++.+... ....+.+||+||++.++..+..++.. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 3456899999999999999999999887654 333333221 56789999999999999888888877 8
Q ss_pred CEEEEEEeCC-CcchHHHHHHHHHHHHhcc---CCCCCeEEEEeeCCCCCCCCCH
Q 030122 86 EAVIYVVDSS-DTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPGALDD 136 (182)
Q Consensus 86 ~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~D~~~~~~~ 136 (182)
|++|+|+|++ ++.++.....|+..++... ...++|+++|+||+|+......
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 9999999999 8899999999988887643 2368999999999999876653
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-25 Score=170.74 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=110.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCC-EEEEEEECCCCCCChhh-------hh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNN-IKFQVWDLGGQTSIRPY-------WR 79 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~~~-------~~ 79 (182)
.+....++|+++|..|+|||||+++|++..+.. ...|.......+.+.. ..+.+|||||+..+..+ +.
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence 355667899999999999999999999887642 3444556666777744 49999999999877654 45
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEec
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.++.++|++++|+|+...+ ....|+..+.. .++|+++|+||+|+...... +..+.+. ...+++++++|
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vS 176 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVS 176 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCS
T ss_pred HHHhcCCEEEEEEeCCChH---HHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEE
Confidence 5788999999999984333 33445555544 37899999999999876543 2222222 23446799999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 030122 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~ 178 (182)
|++|.|++++|+++.+.+.
T Consensus 177 Aktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHhhh
Confidence 9999999999999999874
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=163.55 Aligned_cols=156 Identities=21% Similarity=0.168 Sum_probs=117.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-EEEEEEECCCC----CCChhhhhhhCC---CCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQ----TSIRPYWRCYFP---NTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~i~d~~g~----~~~~~~~~~~~~---~~~~ 87 (182)
+|+++|.+|||||||+++|++..... ...|.......+.+.. ..+.+||+||. ..++.+...+++ .+++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ 239 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 239 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence 68999999999999999999876432 3456566666677754 89999999994 344445455544 5999
Q ss_pred EEEEEeCCC---cchHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccC
Q 030122 88 VIYVVDSSD---TDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 88 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+|+|+|+++ .++++.+..|+.++..... ..++|+++|+||+|+..... .+++.+.+.. ..+++++||++
T Consensus 240 ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~t 313 (342)
T 1lnz_A 240 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAVT 313 (342)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSCC
T ss_pred EEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECCC
Confidence 999999998 7889999888888876532 36899999999999975321 1222222211 14599999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 030122 163 GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~~ 180 (182)
+.|+++++.+|.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 314 REGLRELLFEVANQLENT 331 (342)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhhC
Confidence 999999999999988754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=157.72 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=117.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChh---------hhhhhC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYF 82 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~~~ 82 (182)
...++|+++|++|||||||+++|.+..... ...|.+.....+...+..+.+|||||...... ....+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 345799999999999999999999877532 34455566666666788999999999855321 122344
Q ss_pred CCCCEEEEEEeCCCcc--hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecc
Q 030122 83 PNTEAVIYVVDSSDTD--RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
..+|++++|+|+++.. +++....|+..+.... .+.|+++|+||+|+......++..... ....++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5699999999998877 7788888888876643 289999999999997533222222211 123456999999
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 030122 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~ 179 (182)
++|+|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987753
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-24 Score=165.09 Aligned_cols=149 Identities=19% Similarity=0.189 Sum_probs=113.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCc--c--ccCCCceeeEEEEeCCEEEEEEECCCCC-CChh--------hhhhhCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVV--S--TIPTIGFNVETVQYNNIKFQVWDLGGQT-SIRP--------YWRCYFP 83 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~--~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~-~~~~--------~~~~~~~ 83 (182)
.++|+++|.+|+|||||+|+|.+.... . ...|..+....+.+.+..+.+|||||.. .+.. ....++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 379999999999999999999987632 2 3334446677788889999999999987 5432 2345778
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|++++.+++... ++..+ .+.|+++|+||+|+.+....+++..... ..++++++||++|
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg 389 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKG 389 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGT
T ss_pred cccEEEEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCC
Confidence 999999999999988876543 22222 4789999999999976544444433221 1235999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 030122 164 EGLFEGMDWLSNTLK 178 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~ 178 (182)
.|++++++++.+.+.
T Consensus 390 ~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 390 EGLEKLEESIYRETQ 404 (482)
T ss_dssp CCHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=162.74 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=103.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCC---------hhhhhhhCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYFPN 84 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~~~ 84 (182)
.+|+++|.+|||||||+|+|++..... ...|.......+.+.+..+.+|||||.+.. +.++..++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 379999999999999999999877432 223333556677788899999999998752 3456778999
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCce-EEEEecccCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW-AIFKTCAIKG 163 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (182)
+|++++|+|.++..+..+ .++...+.. .++|+++|+||+|+.... ..+....+.. .++ .++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~-----lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS-----LGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG-----GSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh-----cCCCCEEEEeccCC
Confidence 999999999987655432 222222222 378999999999975310 1111011111 111 3799999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++++++.+.+.+
T Consensus 151 ~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 151 INLDTMLETIIKKLEE 166 (439)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc
Confidence 9999999999988753
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=166.38 Aligned_cols=161 Identities=17% Similarity=0.037 Sum_probs=113.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCC----------CCCChhhhh
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGG----------QTSIRPYWR 79 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~ 79 (182)
....++|+++|.+|+|||||+++|.+..... ...|.......+.+.+..+.+||||| ++.+..+..
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 3456899999999999999999999775322 22233344556777888999999999 566666544
Q ss_pred -hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEE
Q 030122 80 -CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 80 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.+++.+|++++|+|+++..+.. ...|+..+.. .+.|+++|+||+|+.+... .+++.+...........++++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4778899999999998765422 2334444433 5799999999999976432 233333222221122345799
Q ss_pred EecccCCCCHHHHHHHHHHHHhc
Q 030122 157 KTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
++||++|.|++++|+++.+.+.+
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=159.76 Aligned_cols=162 Identities=12% Similarity=0.005 Sum_probs=114.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCc----------e---------eeEEEEeCCEEEEEEECCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIG----------F---------NVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~----------~---------~~~~~~~~~~~~~i~d~~g 70 (182)
....++|+++|++|+|||||+++|.+..... ...+.+ + ...........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3456899999999999999999999754322 000000 0 0000001126899999999
Q ss_pred CCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhc--cccc
Q 030122 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE--LHKI 148 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~--~~~~ 148 (182)
+++|...+..++..+|++++|+|+++..++.....|+..+... ...|+++|+||+|+.+.....+..+.+. ....
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999887777777776655433 3358999999999986432222211111 1111
Q ss_pred CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 149 KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
....++++++||++|.|+++++++|.+.+.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 223567999999999999999999998664
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.2e-24 Score=165.60 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=111.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCC----C---cc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGE----V---VS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~----~---~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 81 (182)
.+...+++|+++|++++|||||+++|.+.. . .. +..|+......+.+.+..+.+|||||+++|...+..+
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHH
Confidence 344567999999999999999999999876 2 11 3445566666777788999999999999998888889
Q ss_pred CCCCCEEEEEEeCCCc---chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc--cc-CCCceEE
Q 030122 82 FPNTEAVIYVVDSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH--KI-KNRQWAI 155 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~--~~-~~~~~~~ 155 (182)
+..+|++++|+|+++. .+.+.+ ..+ .. .++|+++++||+|+.+....+++.+.+... .. ....+++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l----~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHM----LIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHH----HHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HhhCCEEEEEEecCCCccHHHHHHH----HHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 9999999999999873 333322 222 21 468889999999998532222222211100 00 0114679
Q ss_pred EEecccCCCCHHHHHHHHHHHHh
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+++||++|+|+++++++|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999998763
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=162.24 Aligned_cols=151 Identities=16% Similarity=0.094 Sum_probs=103.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCC--CceeeEEEEeCCEEEEEEECCCCCCChhhh--------hhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPT--IGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t--~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~~~ 83 (182)
..++|+++|++|+|||||+|+|.+..... ..++ ..+....+.+.+..+.+|||||...+...+ ..++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 35789999999999999999999865432 2232 235556677788999999999986654332 33678
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|.+++.+... ..|+..+ .+.|+++|+||+|+.+..... ..... ....+++++||++|
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~------~~~~~-~~~~~~i~iSAktg 368 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT------SLEYP-ENITQIVHTAAAQK 368 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST------TCCCC-TTCCCEEEEBTTTT
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH------HHHHh-ccCCcEEEEECCCC
Confidence 8999999999998776554 3444444 347999999999997642211 01111 13456999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++++++.+.+...
T Consensus 369 ~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 369 QGIDSLETAILEIVQTG 385 (462)
T ss_dssp BSHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999987643
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-24 Score=147.87 Aligned_cols=125 Identities=22% Similarity=0.219 Sum_probs=96.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCC----C
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN----T 85 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~ 85 (182)
....++|+++|++|||||||+++|.+..+.. ..++.+. .+....+.+||+||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 3456899999999999999999999887644 2333322 1256788999999999998877777765 8
Q ss_pred CEEEEEEeCC-CcchHHHHHHHHHHHHhcc---CCCCCeEEEEeeCCCCCCCCCHHHHHHhh
Q 030122 86 EAVIYVVDSS-DTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPGALDDAAVSEAL 143 (182)
Q Consensus 86 ~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~D~~~~~~~~~~~~~~ 143 (182)
|++++|||++ +..++..+..|+..++... ...+.|+++|+||+|+.+....+++.+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 8899999999988876543 22589999999999998877666555444
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-24 Score=164.70 Aligned_cols=149 Identities=18% Similarity=0.159 Sum_probs=100.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCc----eeeEEEEeCCEEEEEEECCCCC--------CChhhhhhhCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGGQT--------SIRPYWRCYFPNT 85 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~~ 85 (182)
.+|+++|.+|||||||+|+|.+.......++.| .....+.+.+..+.+|||||++ .++.++..+++++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 689999999999999999999877654333333 3333444467889999999986 4556777888999
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|+|..+..+..+ .++..++.. .++|+++|+||+|+.... .+. .......--.++.+||++|.|
T Consensus 84 d~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~-----~~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMR--ANI-----YDFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp SEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CC-----CSSGGGSSCCCEECBTTTTBT
T ss_pred CEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccch--hhH-----HHHHHcCCCCeEEEeCcCCCC
Confidence 99999999988766543 344444443 578999999999987431 111 111111111589999999999
Q ss_pred HHHHHHHHHHHHh
Q 030122 166 LFEGMDWLSNTLK 178 (182)
Q Consensus 166 i~~~~~~l~~~i~ 178 (182)
++++++++.+.+.
T Consensus 152 v~~L~~~i~~~l~ 164 (436)
T 2hjg_A 152 LGDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHHTGG
T ss_pred hHHHHHHHHHhcC
Confidence 9999999998775
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-24 Score=169.20 Aligned_cols=158 Identities=15% Similarity=0.046 Sum_probs=114.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+.++|+++|++++|||||+++|.+..+.. ..+++. +....+.+ .+..+.+|||||++.|..++..+++.+|++|+|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 34689999999999999999999766544 333333 33344444 456899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+|+++....+....| ..+.. .++|+++++||+|+.+... ..++.............++++++||++|.|+++
T Consensus 83 VDa~dg~~~qt~e~l-~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 83 VAADDGVMKQTVESI-QHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CBSSSCCCHHHHHHH-HHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EECCCCccHHHHHHH-HHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999986655544333 22222 5789999999999975322 122222111111112357899999999999999
Q ss_pred HHHHHHHHHh
Q 030122 169 GMDWLSNTLK 178 (182)
Q Consensus 169 ~~~~l~~~i~ 178 (182)
+|+++...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999988764
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=9.7e-23 Score=158.44 Aligned_cols=159 Identities=15% Similarity=0.043 Sum_probs=107.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh------------hh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY------------WR 79 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------------~~ 79 (182)
..++|+++|++|||||||++++++..... ...|.......+.+.+..+.+|||+|..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 45899999999999999999999876532 222333445667778889999999997543221 12
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++|+|+++..+.+.. ++...+.. .+.|+++|+||+|+.+... .+++...+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 355678999999999887666542 22222222 5799999999999975432 3333322222222223456999
Q ss_pred ecccCCCCHHHHHHHHHHHHhc
Q 030122 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
+||++|.|++++|+.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=146.58 Aligned_cols=166 Identities=13% Similarity=0.075 Sum_probs=106.7
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCC-cc-ccC---CCceeeEEEEeCCEEEEEEECCCCCCChh----------
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEV-VS-TIP---TIGFNVETVQYNNIKFQVWDLGGQTSIRP---------- 76 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~-~~-~~~---t~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------- 76 (182)
.+....++|+++|++|||||||+++|++... .. ..+ |.......+.+.+..+.+|||||+..+..
T Consensus 17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 3455678999999999999999999998773 32 332 34455556677889999999999765421
Q ss_pred -hhhhhCCCCCEEEEEEeCCCcchH-HHHHHHHHHHHhccCCCCCeEEEEee-CCCCCCCCCHHHHHHhh-------ccc
Q 030122 77 -YWRCYFPNTEAVIYVVDSSDTDRI-QTAKEEFHAILEEEELKGAVALIFAN-KQDLPGALDDAAVSEAL-------ELH 146 (182)
Q Consensus 77 -~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~i~v~n-K~D~~~~~~~~~~~~~~-------~~~ 146 (182)
....+++.+|++++|+|+++.... ..+..++..+.... ...|.++++| |+|+... ......... ...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence 223367899999999999863332 23444555443321 2456666666 9999853 333211100 001
Q ss_pred ccCCCceEE--EEecccCCCCHHHHHHHHHHHHhcC
Q 030122 147 KIKNRQWAI--FKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 147 ~~~~~~~~~--~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
.+..+...+ +.+||++|.|++++|+++.+.+...
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 111111012 7899999999999999999987653
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-22 Score=154.11 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=106.5
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCC-------------------------------cc---ccCCCceeeEEE
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEV-------------------------------VS---TIPTIGFNVETV 56 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~-------------------------------~~---~~~t~~~~~~~~ 56 (182)
..+...+++|+++|.+++|||||+++|+.... .. +..|+......+
T Consensus 11 ~~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~ 90 (439)
T 3j2k_7 11 GAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYF 90 (439)
T ss_pred CCCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEE
Confidence 34556789999999999999999999964311 00 122333445556
Q ss_pred EeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcch---HH---HHHHHHHHHHhccCCCCCe-EEEEeeCCC
Q 030122 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---IQ---TAKEEFHAILEEEELKGAV-ALIFANKQD 129 (182)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~D 129 (182)
.+.+..+.+|||||+++|...+..+++.+|++|+|+|+++... |+ .....+..+.. .++| +++++||+|
T Consensus 91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~D 166 (439)
T 3j2k_7 91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMD 166 (439)
T ss_pred ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCC
Confidence 6688899999999999999999999999999999999987532 11 22222222211 3566 999999999
Q ss_pred CCCCCC----HHHHHHh----hcccccC-CCceEEEEecccCCCCHHHHHH
Q 030122 130 LPGALD----DAAVSEA----LELHKIK-NRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 130 ~~~~~~----~~~~~~~----~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+..... .+++... +....+. ...++++++||++|.|+.++++
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 964321 1222221 1111111 1257899999999999999654
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-22 Score=156.28 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=89.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc------------------CCCcc-------ccCCCceeeEEEEeCCEEEEEEECCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM------------------GEVVS-------TIPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~------------------~~~~~-------~~~t~~~~~~~~~~~~~~~~i~d~~g 70 (182)
+..+|+++|++|+|||||+++|+. ..+.+ +..|+......+.+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 456899999999999999999962 11111 23345555667777899999999999
Q ss_pred CCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
+.+|...+..+++.+|++|+|+|+++..+.+....| ..+.. .++|+++|+||+|+....
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCSC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCcccc
Confidence 999999999999999999999999987776665544 33322 578999999999997643
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=154.69 Aligned_cols=159 Identities=13% Similarity=-0.017 Sum_probs=101.7
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCC---Ccc-ccC--CCceeeEEEEe---------------C--------CEEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGE---VVS-TIP--TIGFNVETVQY---------------N--------NIKFQV 65 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~---~~~-~~~--t~~~~~~~~~~---------------~--------~~~~~i 65 (182)
...++|+++|+.++|||||+++|.+.. +.. +.+ |+...+....+ . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 346899999999999999999998543 222 333 55543333222 1 178999
Q ss_pred EECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC----HHHHHH
Q 030122 66 WDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVSE 141 (182)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~----~~~~~~ 141 (182)
||+||+++|...+...+..+|++|+|+|+++..........+..+... ...|+++++||+|+.+... .+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999888888888999999999998643112222222222111 2358999999999976432 233333
Q ss_pred hhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 142 ALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.+.. .....++++++||++|+|+++++++|.+.+.
T Consensus 163 ~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 163 FVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHTT--STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3221 1123567999999999999999999988664
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=151.91 Aligned_cols=146 Identities=8% Similarity=-0.063 Sum_probs=110.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
+|+++|++++|||||+++|. .+..|++.....+.+.+..+.+|||||+++|.......++.+|++|+|+| + ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence 99999999999999999998 45666676666777778899999999999998877778899999999999 4 44
Q ss_pred hHHHHHHHHHHHHhccCCCCCeE-EEEee-CCCCCCCCCHHH----HHHhhcccccCCCceEEEE--ecccC---CCCHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVA-LIFAN-KQDLPGALDDAA----VSEALELHKIKNRQWAIFK--TCAIK---GEGLF 167 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~-i~v~n-K~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i~ 167 (182)
.+.....++..+.. .++|. ++++| |+|+ +....++ +.+.+... ....+++++ +||++ |+|++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence 45555555554433 45777 88999 9999 4321121 22221111 113578999 99999 99999
Q ss_pred HHHHHHHHHHh
Q 030122 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~~~~~l~~~i~ 178 (182)
++++.|.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999987754
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-23 Score=158.35 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=103.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC--CCcc--------------------------------ccCCCceeeEEEEeCCE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG--EVVS--------------------------------TIPTIGFNVETVQYNNI 61 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~~ 61 (182)
..++|+++|++++|||||+++|+.. .+.. +..|+......+.+.+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 4589999999999999999999864 2221 22344455556666888
Q ss_pred EEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhc---cCCCC-CeEEEEeeCCCCCCCC-CH
Q 030122 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEE---EELKG-AVALIFANKQDLPGAL-DD 136 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~-~p~i~v~nK~D~~~~~-~~ 136 (182)
.+.+|||||+++|...+..+++.+|++|+|+|+++ .+|+....|..+.... ....+ .|+++++||+|+.+.. ..
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 99999999999999999999999999999999998 6777544322221111 11124 4689999999997631 11
Q ss_pred -------HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 137 -------AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 137 -------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
+++...+....+....++++++||++|+|+.+++
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 164 KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 1222222222222235789999999999998654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=145.76 Aligned_cols=153 Identities=16% Similarity=0.017 Sum_probs=104.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---cc-CCCceeeEEEEeCCEEEEEEECCCCC-C--------ChhhhhhhC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TI-PTIGFNVETVQYNNIKFQVWDLGGQT-S--------IRPYWRCYF 82 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~-~t~~~~~~~~~~~~~~~~i~d~~g~~-~--------~~~~~~~~~ 82 (182)
+..+|+++|++|+|||||+++|++..+.. .. .|.......+......+.+|||||.. . +......++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 44589999999999999999999887643 12 22222233345578899999999987 2 223345677
Q ss_pred CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCc-eEEEEecc
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQ-WAIFKTCA 160 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 160 (182)
+.+|++++|+|.++ +.....|+...+.. .+.|+++++||+|+... ....+....+. ...+ ..++.+||
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~----~~~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLA----SQMNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHH----TTSCCSEEEECCT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHH----HhcCcCceEEEEC
Confidence 88999999999876 22333344433332 57899999999999852 11112222221 1112 26899999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q 030122 161 IKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~ 178 (182)
++|.|++++++++.+.+.
T Consensus 157 ~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987543
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=158.79 Aligned_cols=155 Identities=17% Similarity=0.097 Sum_probs=108.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccc-----cCCCceeeEEEE----------------eCCEEEEEEECCCCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVST-----IPTIGFNVETVQ----------------YNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~----------------~~~~~~~i~d~~g~~~~ 74 (182)
+.++|+++|++++|||||+++|.+..+... .++++....... +....+++|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 357999999999999999999987654332 234443322211 11236999999999999
Q ss_pred hhhhhhhCCCCCEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--------------HH
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSD---TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DA 137 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--------------~~ 137 (182)
..++..+++.+|++|+|+|+++ +.+++.+. .+.. .++|+++++||+|+..... .+
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 9999999999999999999998 45554333 2211 5789999999999964211 00
Q ss_pred -----------HHHHhhccccc----------CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 138 -----------AVSEALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 138 -----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++...+....+ ....++++.+||++|.|++++++++...+.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11111111111 124578999999999999999999987654
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=154.01 Aligned_cols=160 Identities=13% Similarity=0.020 Sum_probs=108.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCC---Ccc-ccC--CCceeeEEEEeC-----------------------CEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGE---VVS-TIP--TIGFNVETVQYN-----------------------NIKFQ 64 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~---~~~-~~~--t~~~~~~~~~~~-----------------------~~~~~ 64 (182)
....++|+++|+.++|||||+++|.+.. +.. +.+ |+...+....+. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3456899999999999999999998543 222 333 665444333320 17899
Q ss_pred EEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHH
Q 030122 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVS 140 (182)
Q Consensus 65 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~ 140 (182)
+|||||+++|...+...+..+|++|+|+|+++..........+..+... ...|+++++||+|+.+.... +++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999998887777788899999999998643111222222222111 33589999999999864221 1222
Q ss_pred HhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 141 EALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+.+.. .....++++.+||++|.|+++++++|.+.+.
T Consensus 164 ~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 164 EFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 22211 1124567999999999999999999988654
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=155.50 Aligned_cols=156 Identities=19% Similarity=0.151 Sum_probs=110.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC--CCcc----------------ccCCCceeeEEEEeC-----CEEEEEEECCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG--EVVS----------------TIPTIGFNVETVQYN-----NIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~--~~~~----------------~~~t~~~~~~~~~~~-----~~~~~i~d~~g~~ 72 (182)
...+|+++|+.++|||||+++|+.. .... +..|+......+.+. .+.+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3468999999999999999999852 1110 112232223344442 3789999999999
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCc
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQ 152 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
+|...+..+++.+|++|+|+|+++..+.+....|.... . .++|+++|+||+|+.... .+++.+.+... .....
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~~ 157 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLDP 157 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCCG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCCc
Confidence 99998888899999999999999988888777775544 2 578999999999998654 33222222111 01111
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 153 WAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
..++.+||++|.|++++|+++++.+.
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcc
Confidence 23899999999999999999998765
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=147.79 Aligned_cols=159 Identities=18% Similarity=0.074 Sum_probs=106.6
Q ss_pred eE-EEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCC---------ChhhhhhhCCC
Q 030122 18 VL-GFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS---------IRPYWRCYFPN 84 (182)
Q Consensus 18 ~~-i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~~~ 84 (182)
++ |+++|++|||||||+|+|.+..... ..+|.++....+.+.+..+.+|||+|.-+ ++..+ ..+..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 45 9999999999999999999877532 56666677778888888999999999632 22222 24678
Q ss_pred CCEEEEEEeCCCcc--hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH--HHHHhhcccccCCCceEEEEecc
Q 030122 85 TEAVIYVVDSSDTD--RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA--AVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 85 ~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+|++++|+|++++. ..+....|...+ ......+.|+++|+||+|+.+..... .....+... ......+++.+||
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L-~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~SA 335 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEIL-REIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKE-LYSPIFDVIPISA 335 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHH-HHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHH-HCSCEEEEEECBT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHH-HHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHH-hcCCCCcEEEEEC
Confidence 99999999998876 444444443332 32233578999999999997643111 111001000 0012345899999
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 030122 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~ 179 (182)
++|.|++++++++.+.+..
T Consensus 336 ~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 336 LKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhcc
Confidence 9999999999999887653
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=159.80 Aligned_cols=152 Identities=15% Similarity=0.069 Sum_probs=101.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCC--c------------------------------c--ccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEV--V------------------------------S--TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~--~------------------------------~--~~~t~~~~~~~~~~~~ 60 (182)
...+||+++|.+|+|||||+++|++... . + +..|+......+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3468999999999999999999975411 0 0 1234445555666688
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHH-----HHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQT-----AKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~ 135 (182)
..+.+|||||+++|...+..+++.+|++|+|+|+++..++.. ...+...+... ....|+++|+||+|+.+...
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCcccchH
Confidence 999999999999999999999999999999999998654322 11111112221 12357999999999976321
Q ss_pred --HHHHHHhh----cccccCCCceEEEEecccCCCCHHH
Q 030122 136 --DAAVSEAL----ELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 136 --~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
.+++...+ .........++++++||++|+|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 12222221 1111222367899999999999975
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=156.55 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=107.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC--Cc---------c-------ccCCCceeeEEEEeC-----CEEEEEEECCCCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE--VV---------S-------TIPTIGFNVETVQYN-----NIKFQVWDLGGQTS 73 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~--~~---------~-------~~~t~~~~~~~~~~~-----~~~~~i~d~~g~~~ 73 (182)
-.+|+++|+.++|||||+++|+... .. + +..|+......+.|. .+.+++|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3589999999999999999998622 11 0 111222233344443 48899999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccccCC
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKIKN 150 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~~~ 150 (182)
|...+..+++.+|++|+|+|+++..+.+....|.... . .++|+++|+||+|+.+.... +++.+.++..
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~---- 154 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID---- 154 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC----
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999987777777765544 2 47899999999999875422 2233333221
Q ss_pred CceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 151 RQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
...++.+||++|.|++++++++.+.+..
T Consensus 155 -~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 155 -ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp -CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred -cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 1138999999999999999999987653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-23 Score=160.18 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=100.6
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCc----eeeEEEEeCCEEEEEEECCC--------CCCChhhhh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGG--------QTSIRPYWR 79 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~d~~g--------~~~~~~~~~ 79 (182)
.+.....+|+++|.+|||||||+|+|++..+.....+.| .....+.+.+..+.+||||| ++.++..+.
T Consensus 18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp -----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 344456799999999999999999999877654333333 22333334678999999999 455666778
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEec
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++++|++++|+|..+..+ ....|+..++.. .++|+++|+||+|+.... ....+.+.+ ..-..+.+|
T Consensus 98 ~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l-----g~~~~~~iS 165 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL-----GFGEPYPIS 165 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG-----SSSSEEECC
T ss_pred hhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc-----CCCceEEee
Confidence 88899999999999876433 333444454443 689999999999987431 111111111 111267999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 030122 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~ 178 (182)
|++|.|+.++++++.+.+.
T Consensus 166 A~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGG
T ss_pred cccccchHHHHHHHHhhcc
Confidence 9999999999999987764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=139.01 Aligned_cols=166 Identities=10% Similarity=0.019 Sum_probs=99.1
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-c----cCCCceeeEEEEeCCEEEEEEECCCCCC-----------Ch
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-T----IPTIGFNVETVQYNNIKFQVWDLGGQTS-----------IR 75 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~----~~t~~~~~~~~~~~~~~~~i~d~~g~~~-----------~~ 75 (182)
.+....++|+++|++|+|||||+++|++..+.. . ..|.......+.+.+..+.+|||||... +.
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 345567899999999999999999999887754 2 2334455566777889999999999542 33
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchH-HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhh---cccccCCC
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRI-QTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---ELHKIKNR 151 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~---~~~~~~~~ 151 (182)
..+..+++++|++++|+|+++.... .....++....... ...|+++|+||+|+......++..... ........
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 3455566789999999998765442 12222222222211 346999999999987643322111100 00000111
Q ss_pred ceEEEEecccC-----CCCHHHHHHHHHHHHhc
Q 030122 152 QWAIFKTCAIK-----GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 152 ~~~~~~~Sa~~-----~~~i~~~~~~l~~~i~~ 179 (182)
+..++.++... ..++.++|..+.+.+.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 11255555443 36899999988887754
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.8e-22 Score=152.59 Aligned_cols=152 Identities=15% Similarity=0.027 Sum_probs=102.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCC---cc---------------------------------ccCCCceeeEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEV---VS---------------------------------TIPTIGFNVETVQ 57 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~---~~---------------------------------~~~t~~~~~~~~~ 57 (182)
....++|+++|++++|||||+++|++... .. +.-|+......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 34568999999999999999999986431 00 0112223344455
Q ss_pred eCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--
Q 030122 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-- 135 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-- 135 (182)
.....+.+|||||+++|...+..+++.+|++|+|+|+++.... ....++..+... ...|+++|+||+|+.+...
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHH
Confidence 5788999999999999998888889999999999999886532 233333333221 2247999999999976321
Q ss_pred HHHHHHhh----cccccCCCceEEEEecccCCCCHHHH
Q 030122 136 DAAVSEAL----ELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 136 ~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
.+++.... .........++++++||++|.|++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 11121111 11110123478999999999999874
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-23 Score=161.00 Aligned_cols=152 Identities=17% Similarity=0.088 Sum_probs=107.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-c--cCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-T--IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+..+|+++|++++|||||+++|.+..+.. . ..|..+....+.+.+..+.+|||||++.|..++..++..+|++++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVV 82 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVV 82 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEe
Confidence 45689999999999999999998755433 2 22333333344456678999999999999999999999999999999
Q ss_pred eCCCc---chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-c-cCC--CceEEEEecccCCCC
Q 030122 93 DSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-K-IKN--RQWAIFKTCAIKGEG 165 (182)
Q Consensus 93 d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-~-~~~--~~~~~~~~Sa~~~~~ 165 (182)
|+++. .+.+.+ ..+. ..++|+++++||+|+.+... +.+...+... . ... ..++++++||++|.|
T Consensus 83 da~~g~~~qT~e~l----~~~~----~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 83 AADDGVMPQTIEAI----QHAK----AAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp ETTTBSCTTTHHHH----HHHH----HTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred ecccCccHHHHHHH----HHHH----hcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 99873 443332 2221 15789999999999975321 1111111111 0 111 247899999999999
Q ss_pred HHHHHHHHHHH
Q 030122 166 LFEGMDWLSNT 176 (182)
Q Consensus 166 i~~~~~~l~~~ 176 (182)
++++|+++...
T Consensus 154 I~eLle~I~~~ 164 (501)
T 1zo1_I 154 IDELLDAILLQ 164 (501)
T ss_dssp CTTHHHHTTTT
T ss_pred cchhhhhhhhh
Confidence 99999998653
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=151.27 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=110.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC--------CCcc------------ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG--------EVVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
....++|+++|++++|||||+++|.+. .+.. ...|+......+...+..+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 345689999999999999999999873 2211 12233333334455778999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-H----HHHHhhcccc
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-~----~~~~~~~~~~ 147 (182)
|...+..+++.+|++|+|+|+++.... ....++..+.. .++| +++++||+|+.+.... + ++.+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 998888899999999999999886543 33445544433 4678 8999999999852211 1 1222221111
Q ss_pred cCCCceEEEEecccCCCC------------------HHHHHHHHHHHH
Q 030122 148 IKNRQWAIFKTCAIKGEG------------------LFEGMDWLSNTL 177 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~------------------i~~~~~~l~~~i 177 (182)
+....++++++||++|.| +.++++.+.+.+
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 222346799999999987 777777776654
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-22 Score=146.24 Aligned_cols=157 Identities=12% Similarity=0.106 Sum_probs=89.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc--c-------cCCCceeeEEEEe----CCEEEEEEECCCCC-------CC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--T-------IPTIGFNVETVQY----NNIKFQVWDLGGQT-------SI 74 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~-------~~t~~~~~~~~~~----~~~~~~i~d~~g~~-------~~ 74 (182)
...++|+++|.+|+|||||+|+|++..... + .+|+++....... ..+.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 346899999999999999999988766433 3 6777766665554 23699999999973 23
Q ss_pred hhhh-------hhhCC-------------CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 75 RPYW-------RCYFP-------------NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 75 ~~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
..+. ..|+. ++|+++++++.+.......-..++..+.. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHH
Confidence 3332 22222 37899999987653222222334444422 78999999999987432
Q ss_pred CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
........+ ...+...+++++.+|+++++|+.++++++.+.+
T Consensus 161 e~~~~~~~i-~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQI-MKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHH-HHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHH-HHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 222221111 111223445689999999999999999987653
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-22 Score=158.18 Aligned_cols=152 Identities=16% Similarity=0.084 Sum_probs=103.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc----------------------------------ccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|.+|+|||||+++|++....- ...|+......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999998653211 1224445556667788
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RI---QTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
..+.+|||||+++|...+..+++.+|++|+|+|+++.. ++ ......+... .. ....|+++|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SS--LGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HT--TTCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HH--cCCCeEEEEEecccccchh
Confidence 99999999999999999999999999999999998631 11 1111111111 21 1234699999999998632
Q ss_pred C--HHHHHHh----hcccccCCCceEEEEecccCCCCHHHH
Q 030122 135 D--DAAVSEA----LELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 135 ~--~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
. .+++... +.........++++.+||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 1222211 111112223568999999999999875
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-22 Score=151.86 Aligned_cols=157 Identities=16% Similarity=0.048 Sum_probs=107.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC-------CCcc------------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG-------EVVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~-------~~~~------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+++|+++|++++|||||+++|.+. .+.. +..|++.....+...+..+.+|||||+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 589999999999999999999873 1110 122333333334446789999999999999888
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-----HHHHHhhcccccCCC
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-----AAVSEALELHKIKNR 151 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-----~~~~~~~~~~~~~~~ 151 (182)
+..+++.+|++|+|+|+++....+.. .++..+.. .++| +++++||+|+.+.... +++.+.+....+...
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88899999999999999886543333 33333322 4678 7899999999752211 122222221122223
Q ss_pred ceEEEEecccCCCC----------HHHHHHHHHHHHh
Q 030122 152 QWAIFKTCAIKGEG----------LFEGMDWLSNTLK 178 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~----------i~~~~~~l~~~i~ 178 (182)
.++++++||++|.| +.++++.+.+.+.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 46799999999764 8889988887653
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=143.76 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=104.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-------ccCC----------------------Ccee-----------
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPT----------------------IGFN----------- 52 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t----------------------~~~~----------- 52 (182)
+....++|+++|.+|||||||+++|++..+.+ ..|+ ....
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 34456799999999999999999999988642 1232 0000
Q ss_pred ----------e--EEE--Ee-CCEEEEEEECCCCC-------------CChhhhhhhCCCCCEEE-EEEeCCCcchHHHH
Q 030122 53 ----------V--ETV--QY-NNIKFQVWDLGGQT-------------SIRPYWRCYFPNTEAVI-YVVDSSDTDRIQTA 103 (182)
Q Consensus 53 ----------~--~~~--~~-~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~ 103 (182)
. ..+ .. ....+.+|||||.. .+..++..++..++.++ +|+|.++..+....
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0 011 11 24789999999964 23456777888888776 79998876544443
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 104 KEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
..++..+. ..+.|+++|+||+|+.+... ..+..... .........+++.+||++|.|++++++++.+.
T Consensus 182 ~~~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 182 LKIAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 34444432 25789999999999976432 12221110 01111123578999999999999999998763
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=149.36 Aligned_cols=150 Identities=12% Similarity=0.089 Sum_probs=103.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC--CCc--------------------------------cccCCCceeeEEEEeCCE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG--EVV--------------------------------STIPTIGFNVETVQYNNI 61 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~~ 61 (182)
..++|+++|.+++|||||+++|++. .+. .+..|+......+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 4689999999999999999999864 111 023455566667777889
Q ss_pred EEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc---hHH---HHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RIQ---TAKEEFHAILEEEELKGAV-ALIFANKQDLPGAL 134 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~ 134 (182)
.+.+|||||+++|...+..+++.+|++|+|+|+++.. +|+ ....++..+.. .++| +++++||+|+.+..
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~ 161 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWD 161 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTC
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCC
Confidence 9999999999999999999999999999999998652 221 22222222222 3555 99999999997421
Q ss_pred C--HHHHHHh----hcccccCCCceEEEEecccCCCCHHHH
Q 030122 135 D--DAAVSEA----LELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 135 ~--~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
. .+++... +....+....++++++||++|.|+.+.
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1 1122111 111111112467999999999998753
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-20 Score=145.21 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=84.2
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCC--Cc-----------------------cccCCCceeeEEEEeCCEEEEEEECC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGE--VV-----------------------STIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~d~~ 69 (182)
....+|+++|++|+|||||+++|+... .. .+..|+......+.+.+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 346799999999999999999998631 10 01122223344566788999999999
Q ss_pred CCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
|+.+|...+..++..+|++|+|+|+++...-. ...++..+ ...++|+++++||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~----~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT----RLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH----TTTTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH----HHcCCCEEEEEcCcCCcccc
Confidence 99999988888999999999999998764322 22222222 22578999999999997653
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-22 Score=155.79 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=90.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhc--CCCc--------------------------------cccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQM--GEVV--------------------------------STIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|++++|||||+++|+. +.+. .+..|++.....+.+.+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999974 2111 13345555555667788
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc---hHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCC-C
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGAL-D 135 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~-~ 135 (182)
..+.+|||||+++|...+..+++.+|++|+|+|+++.. +|+...++...+... ...++| +++++||+|+.... .
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEEECTTSTTCSSC
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEEECccCCCcccc
Confidence 99999999999999998888899999999999998752 222111121111111 124677 99999999996422 1
Q ss_pred H---H----HHHHhhccc-ccC-CCceEEEEecccCCCCHHHHH
Q 030122 136 D---A----AVSEALELH-KIK-NRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 136 ~---~----~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
. + ++...+... .+. ...++++++||++|.|+.+++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 1 122211111 111 125789999999999998755
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=147.80 Aligned_cols=118 Identities=19% Similarity=0.029 Sum_probs=90.3
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcC--CCc-------------------cccCCCceeeEEEEeCCEEEEEEECCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMG--EVV-------------------STIPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g 70 (182)
.+.....+|+++|++|+|||||+++|+.. .+. .+..|+......+.+.+..+++|||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG 86 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG 86 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence 33456679999999999999999999831 110 134555666667777889999999999
Q ss_pred CCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
+.+|...+..+++.+|++|+|+|+++..+.+....|.. +.. .++|+++|+||+|+....
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTCC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccCC
Confidence 99999999999999999999999998887776655543 322 479999999999998653
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=157.02 Aligned_cols=160 Identities=17% Similarity=0.089 Sum_probs=108.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCC-------Cc--------c----ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGE-------VV--------S----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~-------~~--------~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
.....++|+++|++++|||||+++|.+.. +. . ...|+......+...+..+.+|||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34557899999999999999999998631 00 0 11222222334445778999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-----HHHHHhhcccc
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-----AAVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-----~~~~~~~~~~~ 147 (182)
|...+..+++.+|++|+|+|+++....+ ...++..+.. .++| +++++||+|+.+.... +++.+.+....
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 9988888999999999999998764322 3334433322 3678 7899999999853211 12222222222
Q ss_pred cCCCceEEEEecccCC--------CCHHHHHHHHHHHH
Q 030122 148 IKNRQWAIFKTCAIKG--------EGLFEGMDWLSNTL 177 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~--------~~i~~~~~~l~~~i 177 (182)
+....++++++||++| .|+.++++.+.+.+
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 2223578999999999 46888888887654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-21 Score=146.61 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=82.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc--c--------cCCCceeeEEEEe--C--CEEEEEEECCCC-------CCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS--T--------IPTIGFNVETVQY--N--NIKFQVWDLGGQ-------TSI 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~--~--------~~t~~~~~~~~~~--~--~~~~~i~d~~g~-------~~~ 74 (182)
..++|+++|++|+|||||+++|++..... . .+|+++....+.+ . ...+.+|||||. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 35799999999999999999987654322 2 2455544433322 2 347999999998 667
Q ss_pred hhhhh-------hhCCCC-------------CEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 75 RPYWR-------CYFPNT-------------EAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 75 ~~~~~-------~~~~~~-------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
+.++. .|+..+ |+++|+++.+ ..++..+. .++..+ ..++|+++|+||+|+...
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCH
Confidence 66665 444432 3455555432 34454444 343333 257899999999999753
Q ss_pred CCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
....... ......+...+++++++||++|.+ ++.|.++.+.+.+
T Consensus 190 ~ev~~~k-~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 190 KERERLK-KRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHH-HHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 2221111 112223344567899999999999 8888888887754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-20 Score=129.40 Aligned_cols=156 Identities=15% Similarity=0.061 Sum_probs=97.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeCCEEEEEEECCCCCCC----------hhhhh
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYNNIKFQVWDLGGQTSI----------RPYWR 79 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~~~~~i~d~~g~~~~----------~~~~~ 79 (182)
+.....+|+++|++|||||||++++++..+.. ..++.|.. ...+.+.+ .+.+||+||.... +....
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 33455799999999999999999999877433 45555522 22333333 6789999997532 22222
Q ss_pred hhC---CCCCEEEEEEeCCCcchHHH--HHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhcccccCC
Q 030122 80 CYF---PNTEAVIYVVDSSDTDRIQT--AKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHKIKN 150 (182)
Q Consensus 80 ~~~---~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~~~~ 150 (182)
.++ ..++++++++|++++.+... +..|+ . ..++|+++++||+|+...... ..+...... ..
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~ 170 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA----V---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FN 170 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH----H---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH----H---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cC
Confidence 333 57899999999988766432 22222 2 157899999999998753211 111111111 12
Q ss_pred CceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 151 RQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
..+.++++|++++.|++++++++.+.+.+
T Consensus 171 ~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 171 GDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp SCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 34678999999999999999999887654
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-22 Score=159.20 Aligned_cols=150 Identities=18% Similarity=0.125 Sum_probs=82.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCC-------------------------------Cc---cccCCCceeeEEEEeC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGE-------------------------------VV---STIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~-------------------------------~~---~~~~t~~~~~~~~~~~ 59 (182)
....++|+++|++++|||||+++|+... .. .+..|+......+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4457899999999999999999996421 00 0122333444445556
Q ss_pred CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RI---QTAKEEFHAILEEEELKGAV-ALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~ 132 (182)
+..+.+|||||+++|...+..++..+|++|+|+|+++.. .+ ......+..+.. .++| +++|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence 789999999999999888888899999999999998532 11 111111122212 3555 999999999975
Q ss_pred CCC--HH----HHHHhh-cccccCCCceEEEEecccCCCCHH
Q 030122 133 ALD--DA----AVSEAL-ELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 133 ~~~--~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
... .+ ++...+ ....+....++++.+||++|.|+.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 221 12 222222 112223346789999999999998
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.9e-19 Score=141.85 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=84.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc--------------c-------ccCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV--------------S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
...+|+++|+.|+|||||+++|++.... + ...++......+.+..+.+++|||||+.+|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3468999999999999999999843221 0 122333444556668899999999999999
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
...+..+++.+|++++|+|+++....+. ..++..+.. .++|+++++||+|+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence 9888999999999999999877654333 244444433 478999999999987
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-19 Score=134.76 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=110.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc--c-ccCCCceeeEEEEeCC-EEEEEEECCCCCCCh----hh---hhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV--S-TIPTIGFNVETVQYNN-IKFQVWDLGGQTSIR----PY---WRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~----~~---~~~~~~~~~~ 87 (182)
.|+++|++|||||||++.+.+.... . ...|.......+.+.. ..+.+||++|..... .+ .......++.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~ 238 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 238 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence 5899999999999999999987532 1 2334444555555553 789999999975321 11 2223467999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
+++++|++ ...+..+..+..++.... .....|.++++||+|+......+.+.+.+ .....+++.+||++++|+
T Consensus 239 lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 239 LLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAGL 312 (416)
T ss_dssp EEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTTH
T ss_pred hhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccCH
Confidence 99999998 667788877777765542 12468999999999987541112222222 223456999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++++++.+.+.+.
T Consensus 313 ~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 313 PALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=141.03 Aligned_cols=116 Identities=17% Similarity=0.099 Sum_probs=89.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhc--CCCc-------------------cccCCCceeeEEEEeCCEEEEEEECCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQM--GEVV-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (182)
+.....+|+++|.+|+|||||+++|+. +.+. .+..|+......+.+.+..+++|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 344567999999999999999999984 2211 1233444455567778899999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+|...+..+++.+|++|+|+|+++..+.+....|. .+.. .++|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCcccc
Confidence 999998888999999999999999887776655543 3333 47899999999999865
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=129.00 Aligned_cols=117 Identities=10% Similarity=0.028 Sum_probs=82.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---c-cCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhC--------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---T-IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF-------- 82 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~-------- 82 (182)
...++|+++|.+|+|||||+++|++..... + ..|.......+.+.+..+.+|||||+.++......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 357899999999999999999999887533 2 2244455566677889999999999987754433333
Q ss_pred -CCCCEEEEEEeCCCcchHHHH-HHHHHHHHhccC-CCCCeEEEEeeCCCCCC
Q 030122 83 -PNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEE-LKGAVALIFANKQDLPG 132 (182)
Q Consensus 83 -~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~ 132 (182)
.++|++++|++++... +... ..|+..+..... ....|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2789999999987654 3222 344444443211 12349999999999853
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-18 Score=139.25 Aligned_cols=115 Identities=14% Similarity=-0.016 Sum_probs=86.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCC--Cc-------------------cccCCCceeeEEEEeCC-------EEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGE--VV-------------------STIPTIGFNVETVQYNN-------IKFQV 65 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~-------~~~~i 65 (182)
.....+|+++|+.|+|||||+++|+... +. .+..|+......+.+.+ +.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4455789999999999999999997431 11 02234434444555655 89999
Q ss_pred EECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 66 WDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
|||||+.+|...+..+++.+|++|+|+|+++....+....| ..... .++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCcccc
Confidence 99999999999999999999999999999987655544433 33322 57899999999998764
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=144.32 Aligned_cols=160 Identities=16% Similarity=0.133 Sum_probs=106.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCc-eee--------EEEEe--------------------------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIG-FNV--------ETVQY-------------------------- 58 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~-~~~--------~~~~~-------------------------- 58 (182)
..++|+|+|.+|+|||||+|+|++....+ ..|+.. +.. .+..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999877544 233331 000 01111
Q ss_pred --------------------CC----EEEEEEECCCCCC---ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHH
Q 030122 59 --------------------NN----IKFQVWDLGGQTS---IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAIL 111 (182)
Q Consensus 59 --------------------~~----~~~~i~d~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 111 (182)
.. ..+.+|||||... ....+..++.++|++++|+|++++.+..+...|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l- 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI- 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT-
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH-
Confidence 00 3689999999543 4556677889999999999999887777665553333
Q ss_pred hccCCCCCeEEEEeeCCCCCCCC-----CHHH-------HHHhh---cccccC-----CCceEEEEeccc----------
Q 030122 112 EEEELKGAVALIFANKQDLPGAL-----DDAA-------VSEAL---ELHKIK-----NRQWAIFKTCAI---------- 161 (182)
Q Consensus 112 ~~~~~~~~p~i~v~nK~D~~~~~-----~~~~-------~~~~~---~~~~~~-----~~~~~~~~~Sa~---------- 161 (182)
.. .+.|+++|+||+|+.... ..++ +.... ...... ....+++.+||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 22 367899999999986432 1111 11110 001111 123459999999
Q ss_pred ----CCCCHHHHHHHHHHHHhc
Q 030122 162 ----KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ----~~~~i~~~~~~l~~~i~~ 179 (182)
++.|++++++++.+.+..
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887653
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=123.19 Aligned_cols=170 Identities=19% Similarity=0.196 Sum_probs=114.5
Q ss_pred cCCCCcceeEEEEEecC-CCChHHHHHHhhcCC-Ccc-------ccCCCc--eee-----EEEEe----C----------
Q 030122 10 TSHPPCTHVLGFSFFID-NFGNLCDTDRLQMGE-VVS-------TIPTIG--FNV-----ETVQY----N---------- 59 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~-~~GKssl~~~l~~~~-~~~-------~~~t~~--~~~-----~~~~~----~---------- 59 (182)
++--+..++|++++||. ..=+.+|+.++...+ ..+ ....+| +.. +.+.. .
T Consensus 9 ~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~ 88 (227)
T 3l82_B 9 HSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAR 88 (227)
T ss_dssp SCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC---------
T ss_pred HHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhh
Confidence 34456778899999996 666779999999765 221 111222 111 12221 0
Q ss_pred --C----EEEEEE------ECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHH---HHHHhccC-CCCCeEEE
Q 030122 60 --N----IKFQVW------DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEF---HAILEEEE-LKGAVALI 123 (182)
Q Consensus 60 --~----~~~~i~------d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~p~i~ 123 (182)
. -++-.. +.+||+.++++|..||+++|++|||+|.++.+.++ ...-+ ..++.... ..+.|++|
T Consensus 89 ~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLV 167 (227)
T 3l82_B 89 EEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLV 167 (227)
T ss_dssp ----------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEE
T ss_pred hhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEE
Confidence 0 011122 34489999999999999999999999999987655 43333 33333332 47899999
Q ss_pred EeeCC-CCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcCC
Q 030122 124 FANKQ-DLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 124 v~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 181 (182)
++||. |++.+....++.+.+.+... .+...+..|||++|+|+.+.++||.+.+..++
T Consensus 168 lANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 168 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp EEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred EeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 99995 78888889999999998877 48899999999999999999999998876653
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=129.15 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=97.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-------ccCCC-cee---------------------------------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPTI-GFN--------------------------------- 52 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t~-~~~--------------------------------- 52 (182)
....++|+|+|.+|||||||+|+|++..+.+ ..|+. ...
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 3455799999999999999999999887622 11100 000
Q ss_pred -------------------eEEEEe---CCEEEEEEECCCCCC-------------ChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 53 -------------------VETVQY---NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 53 -------------------~~~~~~---~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
...+.+ ....+.+|||||... +...+..++..+|++++|+|..+.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 001111 346799999999754 344567788899999999997433
Q ss_pred chH-HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccC---CCCHHHHHHH
Q 030122 98 DRI-QTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIK---GEGLFEGMDW 172 (182)
Q Consensus 98 ~s~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~ 172 (182)
... .....+...+ . ..+.|+++|+||+|+.+... ..+..... .......-+++..+|+.+ +.|+.++++.
T Consensus 181 ~~~~~~~~~i~~~~-~---~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 181 DLANSDALQLAKEV-D---PEGKRTIGVITKLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp CSTTCSHHHHHHHH-C---SSCSSEEEEEECTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred chhhhHHHHHHHHh-C---CCCCcEEEEEcCcccCCcchHHHHHHhCC-CccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 211 1111222222 2 25789999999999976433 12222110 011111223444555556 7899999998
Q ss_pred HHHHHhc
Q 030122 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~i~~ 179 (182)
+.+.+..
T Consensus 256 ~~~~~~~ 262 (315)
T 1jwy_B 256 EILYFKN 262 (315)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 8776653
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=122.24 Aligned_cols=118 Identities=11% Similarity=0.015 Sum_probs=80.5
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---c-cCCCceeeEEEEeCCEEEEEEECCCCCCChhhh-------hhh--
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---T-IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW-------RCY-- 81 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------~~~-- 81 (182)
...++|+++|.+|+|||||+++|++..+.. . ..|.......+...+..+.+|||||...+.... ..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 357899999999999999999999887643 2 222223334455588999999999987664321 112
Q ss_pred CCCCCEEEEEEeCCCcchHHHH-HHHHHHHHhccC-CCCCeEEEEeeCCCCCCC
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEE-LKGAVALIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~ 133 (182)
...+|++++|+|++.. ++... ..|+..+..... ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 3478999999998653 33322 355555543311 112699999999998753
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-19 Score=129.72 Aligned_cols=130 Identities=18% Similarity=0.073 Sum_probs=101.5
Q ss_pred HHHHHhhcCCCc-c-ccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc-hHHHHHHHH
Q 030122 32 CDTDRLQMGEVV-S-TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEF 107 (182)
Q Consensus 32 sl~~~l~~~~~~-~-~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~ 107 (182)
+|+.+++.+.|. . +.||+|.... +.. .+..+.+||+ +++++.+++.+++++|++|+|||++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688889988887 5 8899994333 333 2237999999 8999999999999999999999999987 688888898
Q ss_pred HHHHhccCCCCCeEEEEeeCCCCCCCCCHH---HHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 108 HAILEEEELKGAVALIFANKQDLPGALDDA---AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 108 ~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
..+.. .++|+++|+||+|+.+....+ ++.+.+. .. ++++++||++|.|++++|.++.
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~-----~~-~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS-----GL-YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT-----TT-SCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh-----hh-CcEEEEECCCCcCHHHHHHHhc
Confidence 87643 579999999999997532211 2222221 12 5699999999999999998875
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-18 Score=128.99 Aligned_cols=150 Identities=11% Similarity=0.101 Sum_probs=97.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--------------------------------------------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-------------------------------------------- 50 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-------------------------------------------- 50 (182)
.-.+|+|+|++|||||||+++|.+..+.+ ...+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34499999999999999999999977633 111110
Q ss_pred --------e--eeEEEEe---CCEEEEEEECCCCCCC-------------hhhhhhhCCCCCEEEEEEeCCCcchH-HHH
Q 030122 51 --------F--NVETVQY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPNTEAVIYVVDSSDTDRI-QTA 103 (182)
Q Consensus 51 --------~--~~~~~~~---~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~ 103 (182)
+ ....+.+ ....+.+|||||..++ ..+...|+.++|++|+|+|..+.+.. ...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 0 0001111 3457899999998776 56777889999999999987654432 222
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHH
Q 030122 104 KEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
..+...+ ...+.|+++|+||+|+.+... ..++... .......+|+.+|+.++.++++.+..+
T Consensus 193 ~~l~~~~----~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 193 IKISREV----DPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHS----CTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHh----cccCCCEEEEEeCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCHH
Confidence 2222222 235789999999999975432 1222211 122334569999999988887765543
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-18 Score=129.79 Aligned_cols=156 Identities=13% Similarity=0.076 Sum_probs=95.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-------ccCC---------------------------------------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPT--------------------------------------- 48 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t--------------------------------------- 48 (182)
...++|+|+|.+|||||||+++|++..+.+ ..|+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999988642 1122
Q ss_pred ----Ccee--eEEEE--e-CCEEEEEEECCCCCC-------------ChhhhhhhCCCCCEEEE-EEeCCCcchHHHHHH
Q 030122 49 ----IGFN--VETVQ--Y-NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTEAVIY-VVDSSDTDRIQTAKE 105 (182)
Q Consensus 49 ----~~~~--~~~~~--~-~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~ 105 (182)
.++. ...+. . ....+.+|||||... ++.+...|+.+++.+|+ |.|.+....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0000 00111 1 246899999999532 33466667776665555 555543222122222
Q ss_pred HHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 106 EFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 106 ~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++..+ ...+.|+++|+||+|+.+... ..++.... .........+++.+||+++.|++++++++.+
T Consensus 189 i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHh----CcCCCceEEEeccccccCcchhHHHHHhCC-cccccCCceEEEeCCcccccccccHHHHHHH
Confidence 33333 225789999999999975432 12222111 1111122346889999999999999998875
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-18 Score=131.68 Aligned_cols=80 Identities=21% Similarity=0.071 Sum_probs=46.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEE---------------------EeC---CEEEEEEECCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETV---------------------QYN---NIKFQVWDLGG 70 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~---------------------~~~---~~~~~i~d~~g 70 (182)
++|+++|.+|+|||||+|+|++..... ...|........ .+. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 489999999999999999999876321 222333222211 111 36899999999
Q ss_pred CCC----Chhhhh---hhCCCCCEEEEEEeCCCc
Q 030122 71 QTS----IRPYWR---CYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 71 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 97 (182)
... .+.+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 222322 456899999999999875
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-18 Score=121.57 Aligned_cols=112 Identities=20% Similarity=0.323 Sum_probs=90.0
Q ss_pred CCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHH---HHHhccC-CCCCeEEEEeeC-CCCCCCCCHHHHHHh
Q 030122 68 LGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFH---AILEEEE-LKGAVALIFANK-QDLPGALDDAAVSEA 142 (182)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~p~i~v~nK-~D~~~~~~~~~~~~~ 142 (182)
.+||+..+++|..||+++|++|||+|+++.++++ ...-+. .++.... ..+.|++|++|| .|++.+....++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 5689999999999999999999999999998765 333222 3333322 378999999996 689988899999999
Q ss_pred hcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcCC
Q 030122 143 LELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 181 (182)
+++.... +...+..|||++|+|+.+.++|+.+.+..++
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 9988774 7889999999999999999999999887653
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=124.63 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=85.5
Q ss_pred EEEEEecCCCChHHHHHHhhcC---------------------CCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG---------------------EVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~---------------------~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
+|+++|+.++|||||..+|+.. ++.+ +.-|+......+.|++..++++||||+.+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 6999999999999999999621 1111 34455555667888999999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
|.......++-+|++|+|+|+...-.-+....| +.... .++|.++++||+|.....
T Consensus 113 F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 113 FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDREALH 168 (548)
T ss_dssp CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSCCCC
T ss_pred HHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccchhcc
Confidence 999888889999999999999876655555544 33333 589999999999987653
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.2e-18 Score=124.38 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=78.6
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcC-CCcc-c--------cCCCceeeEEEEe----CCEEEEEEECCCC-------CC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMG-EVVS-T--------IPTIGFNVETVQY----NNIKFQVWDLGGQ-------TS 73 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~-~~~~-~--------~~t~~~~~~~~~~----~~~~~~i~d~~g~-------~~ 73 (182)
...++|+++|+.|+|||||+++|.+. .+.. . .++.+.....+.. ....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999998875 3322 1 1233322222222 3468999999998 55
Q ss_pred Chhhhh-------hhCCC-------------CCEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 74 IRPYWR-------CYFPN-------------TEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 74 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
++.+.. .++.+ +++++++.+++. .+++... .++..+ ..+.|+++|+||+|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-----~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-----TTTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-----HhcCCEEEEEEeCCCCC
Confidence 555443 33322 344555555432 1233322 222222 14679999999999875
Q ss_pred CCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 133 ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
...... ........++..+++++++||++| |++++|.++.+.+.+
T Consensus 170 ~~e~~~-~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERER-LKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHH-HHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 321111 111111222333467999999999 999999999988764
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-17 Score=125.02 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=71.5
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA- 137 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~- 137 (182)
.++.+.+|||||... ........+|++++|+|....+.++.+. ....+.|+++|+||+|+.......
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 467899999999432 2333458899999999987655442221 112356999999999986432221
Q ss_pred ---HHHHhhccccc--CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 138 ---AVSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 138 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++...+..... .....+++.+||++|.|++++++++.+.+.
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 22222111111 123457999999999999999999988764
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=132.05 Aligned_cols=113 Identities=16% Similarity=0.056 Sum_probs=87.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC------------CCcc-------ccCCCceeeEEEEeC---------------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG------------EVVS-------TIPTIGFNVETVQYN--------------- 59 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~------------~~~~-------~~~t~~~~~~~~~~~--------------- 59 (182)
+....+|+++|++|+|||||+++|+.. .+.+ +..|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 345578999999999999999999864 1111 223444334444443
Q ss_pred -CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 60 -NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 60 -~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
++.+++|||||+.+|...+..+++.+|++|+|+|+++..+++....|.... . .++|+++|+||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 688999999999999999999999999999999999988888766554332 2 578999999999986
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=127.46 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=81.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCc----cccCCCceeeEEEEe-------------------------------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVV----STIPTIGFNVETVQY------------------------------- 58 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~~~------------------------------- 58 (182)
....++|+|+|.+|+|||||+|+|++..+. ...|+... ...+..
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 345689999999999999999999998763 12222211 000000
Q ss_pred --------CC---EEEEEEECCCCCC-----------ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCC
Q 030122 59 --------NN---IKFQVWDLGGQTS-----------IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 59 --------~~---~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (182)
.. ..+.+|||||... +...+..++..+|++++|+|+++....+....++..+..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---- 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---- 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence 00 3589999999765 345566678899999999999876555555666555532
Q ss_pred CCCeEEEEeeCCCCCCCC
Q 030122 117 KGAVALIFANKQDLPGAL 134 (182)
Q Consensus 117 ~~~p~i~v~nK~D~~~~~ 134 (182)
.+.|+++|+||+|+....
T Consensus 217 ~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp CGGGEEEEEECGGGSCHH
T ss_pred cCCCEEEEEECCCccCHH
Confidence 468999999999998643
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=122.97 Aligned_cols=156 Identities=10% Similarity=0.056 Sum_probs=75.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-c--------cCCCceeeEEEEe----CCEEEEEEECCCCCCCh------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-T--------IPTIGFNVETVQY----NNIKFQVWDLGGQTSIR------ 75 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~--------~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~------ 75 (182)
.-.++|+++|++|||||||++.|++..+.. . .+|.+.....+.. ....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 345789999999999999999999876532 1 2232221111111 23578999999976531
Q ss_pred -hh------------------hhhhCCCCCEEEEEEeCCCc-chHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 76 -PY------------------WRCYFPNTEAVIYVVDSSDT-DRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 76 -~~------------------~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
.+ ...++.++++.+++|+.... .++.... .|+..+. .+.|+|+|+||+|+....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHH
Confidence 11 12344556655555554432 3444443 4555552 378999999999987532
Q ss_pred CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
...... ......+...+++++++|+++++++.++|..+...
T Consensus 184 ev~~~k-~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 184 ECQQFK-KQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHH-HHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHH-HHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 221111 11111222234569999999999999988777654
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-15 Score=112.47 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=59.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-----------------EEEEEEECCCCCCChh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSIRP 76 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~~~~ 76 (182)
.++|+++|.+|+|||||+|+|.+..... ...|++.+...+.+.+ ..+.+||+||..++..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3689999999999999999999876422 3346665555555533 5799999999987642
Q ss_pred ----h---hhhhCCCCCEEEEEEeCCC
Q 030122 77 ----Y---WRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 77 ----~---~~~~~~~~~~~i~v~d~~~ 96 (182)
+ +..+++++|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 2335689999999999975
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-17 Score=113.95 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=91.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-------ccCCC----------ceeeEEE------------------EeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPTI----------GFNVETV------------------QYNN 60 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t~----------~~~~~~~------------------~~~~ 60 (182)
...+|+++|.+|||||||+++|....... ..+.. +.....+ ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34689999999999999999998642111 01100 1111111 1134
Q ss_pred EEEEEEECCCCCCChhhhhhhC-CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--CCHH
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYF-PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDA 137 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--~~~~ 137 (182)
..+.+|||+|+... +.++ ...+.+++|+|+++.... ...+ ... .+.|+++|+||+|+.+. ...+
T Consensus 109 ~d~iiidt~G~~~~----~~~~~~~~~~~i~vvd~~~~~~~--~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 109 CDLLLIENVGNLIC----PVDFDLGENYRVVMVSVTEGDDV--VEKH-PEI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp CSEEEEEEEEBSSG----GGGCCCSCSEEEEEEEGGGCTTH--HHHC-HHH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCEEEEeCCCCCCC----CchhccccCcEEEEEeCCCcchh--hhhh-hhh------hhcCCEEEEecccCCcchhhHHH
Confidence 57889999985211 1111 357889999998765421 1111 111 25789999999998642 2334
Q ss_pred HHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 138 AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
++...+... ....+++++||++|.|++++|+++.+.+...
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 443333211 2345799999999999999999999877643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-16 Score=119.10 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=64.0
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-- 136 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-- 136 (182)
.+..+.++||+|.... .......+|.+++|+|++.....+.+.. .+ .+.|.++|+||+|+.+....
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 4678899999995322 2344678999999999886543322111 11 34688999999998642111
Q ss_pred --HHHHHhhccccc--CCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 137 --AAVSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 137 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
..+...+..... .....+++.+||++|.|+++++++|.+.+
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 112222211111 11235789999999999999999998765
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.5e-16 Score=111.57 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=69.9
Q ss_pred EEEEEEECCCCCCChhhhh------hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
+.+.+|||||......... ..+.. +++++++|.....+..................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5799999999865433211 24466 8999999876443322222211111111111468999999999987532
Q ss_pred CHHHHHHhhc--------------------------ccccCCCceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 135 DDAAVSEALE--------------------------LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 135 ~~~~~~~~~~--------------------------~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
..+++.+.+. ... .....+++++||++|.|++++++++.+.+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTE-VLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHH-HSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHH-hcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 2211111110 000 0122368999999999999999999987653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-16 Score=117.43 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=67.1
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA- 137 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~- 137 (182)
.++.+.++||||...... .....+|++++|+|.+..+.++.+.. . ..+.|.++|+||+|+.+.....
T Consensus 147 ~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~------~~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---G------LMEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---H------HHHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---h------hhcccCEEEEECCCCCChHHHHH
Confidence 467899999999654332 24578999999999875533211110 0 0246889999999987532222
Q ss_pred ---HHHHhhccccc--CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 138 ---AVSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 138 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++...+..... .....+++.+||++|.|++++++++.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22221111110 112357899999999999999999988654
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=123.50 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=109.0
Q ss_pred EEEEEecCCCChHHHHHHhhc--CCCcc-------------------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM--GEVVS-------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~--~~~~~-------------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+|+++|+.++|||||..+|+. +.... +.-|+......+.|++..++++|||||.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 599999999999999999873 11110 223344444556778899999999999999998
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccc-------
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHK------- 147 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~------- 147 (182)
....++-+|++|+|+|+...-.-+....| +.... .++|.++++||+|....... +++.+.+....
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTRILF-HALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 88899999999999999865433333323 33333 47899999999998765432 22322221100
Q ss_pred -------------------------------------------------cCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 148 -------------------------------------------------IKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 148 -------------------------------------------------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
....-.|++..||.++.|++.+++.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 011235788999999999999999988754
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=118.91 Aligned_cols=156 Identities=12% Similarity=0.043 Sum_probs=97.5
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCC-------------------------------------------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTI------------------------------------------- 49 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~------------------------------------------- 49 (182)
....+|+|+|.+++||||++|+|++..+-+ ..++.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 345699999999999999999999987632 11111
Q ss_pred -----cee--eEEEE--e-CCEEEEEEECCCCCCC-------------hhhhhhhC-CCCCEEEEEEeCCCcchHHHHHH
Q 030122 50 -----GFN--VETVQ--Y-NNIKFQVWDLGGQTSI-------------RPYWRCYF-PNTEAVIYVVDSSDTDRIQTAKE 105 (182)
Q Consensus 50 -----~~~--~~~~~--~-~~~~~~i~d~~g~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 105 (182)
++. ...+. . ....+.++||||-... ..+...|+ ..+|++++|+|++....-.+...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 000 00111 1 3345889999995431 12333344 47899999999986533233223
Q ss_pred HHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 106 EFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 106 ~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++..+. ..+.|+++|+||+|+.+.... ..+... ..........+++.+||++|.|++++++.+.+
T Consensus 209 ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 333332 257899999999999754321 222211 11111123357889999999999999988876
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-16 Score=112.91 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=85.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--------------EEEEe--C-------------------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--------------ETVQY--N------------------- 59 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--------------~~~~~--~------------------- 59 (182)
...+|+++|.+|||||||+++|+...+.. +.++++.+. ..+.+ .
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 35799999999999999999999765433 333333111 11111 0
Q ss_pred -CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--CCH
Q 030122 60 -NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDD 136 (182)
Q Consensus 60 -~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--~~~ 136 (182)
...+.++|++|.-... ..+-...+..+.++|......... .+... .+.|.++|+||+|+.+. ...
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~------~~~~~iiv~NK~Dl~~~~~~~~ 184 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGI------MKTADLIVINKIDLADAVGADI 184 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHH------HTTCSEEEEECGGGHHHHTCCH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhH------hhcCCEEEEeccccCchhHHHH
Confidence 1145555555521110 111123455566666432211100 00011 24678999999998642 233
Q ss_pred HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 137 AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
+++...... .....+++++||++|.|++++|+++.+.+.+.
T Consensus 185 ~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 185 KKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 333322211 12345799999999999999999999888754
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-13 Score=111.54 Aligned_cols=113 Identities=16% Similarity=0.067 Sum_probs=80.6
Q ss_pred cee-EEEEEecCCCChHHHHHHhhcCC--------------Cc-----c--ccCCCceeeEEEEeC-------CEEEEEE
Q 030122 16 THV-LGFSFFIDNFGNLCDTDRLQMGE--------------VV-----S--TIPTIGFNVETVQYN-------NIKFQVW 66 (182)
Q Consensus 16 ~~~-~i~viG~~~~GKssl~~~l~~~~--------------~~-----~--~~~t~~~~~~~~~~~-------~~~~~i~ 66 (182)
.++ +|+++|+.++|||||..+|+... +. + +.-|+.....++.|+ ++.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 345 59999999999999999987311 00 0 222333333445552 5899999
Q ss_pred ECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 67 DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 67 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
|||||.+|.......++-+|++|+|+|+...-.-+.-.-| +...+ .++|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----HTCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHH----cCCCeEEEEccccccCc
Confidence 9999999999888888999999999999876554444444 33333 47999999999998754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=104.52 Aligned_cols=79 Identities=15% Similarity=0.073 Sum_probs=55.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCC--cc-ccCCCceeeEEEEe---------------------CCEEEEEEECCCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEV--VS-TIPTIGFNVETVQY---------------------NNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~--~~-~~~t~~~~~~~~~~---------------------~~~~~~i~d~~g~~~ 73 (182)
++|+++|.+|||||||++++.+... .. ...|+..+.....+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5899999999999999999997542 11 22234433333322 245799999999876
Q ss_pred Ch-------hhhhhhCCCCCEEEEEEeCCC
Q 030122 74 IR-------PYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 74 ~~-------~~~~~~~~~~~~~i~v~d~~~ 96 (182)
.. ..+..+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 223345789999999999975
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-14 Score=106.17 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=81.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChh-------hhhhhCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-------YWRCYFPNT 85 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~~ 85 (182)
...+|+++|.||||||||+|+|.+..... ...|.......+.+.+..++++||||--.... .....++.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 34689999999999999999999866433 55666688888889999999999999643211 223345689
Q ss_pred CEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 86 EAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 86 ~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
|++++|+|.+++.. ++.+..-+... .....+.|.++++||.|..
T Consensus 151 d~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSSS
T ss_pred CccccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhhh
Confidence 99999999998743 22222222221 1123567889999999974
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.9e-14 Score=104.24 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=63.9
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-- 136 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-- 136 (182)
.+..+.++||+|...-. ......+|.+++++|....+..+.+... + .+.|.++++||+|+......
T Consensus 146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i------~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---I------FELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---H------HHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---H------hccccEEEEEchhccCchhHHH
Confidence 57789999999965432 2234689999999997654322111111 0 13456788899997542211
Q ss_pred ---HHHHHhhccccc--CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 137 ---AAVSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 137 ---~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+.+...+..... .....+++.+|++++.|++++++.+.+...
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 122222211110 011235888999999999999999887653
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-13 Score=101.56 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=53.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeC-----------------CEEEEEEECCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQT 72 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~i~d~~g~~ 72 (182)
......+|+++|.+|+|||||+|+|.+..... ...|+.++...+.+. ...+.+||+||..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 34456799999999999999999999876532 344555555555542 2359999999987
Q ss_pred CChh-------hhhhhCCCCCEEEEEEeCCCc
Q 030122 73 SIRP-------YWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 73 ~~~~-------~~~~~~~~~~~~i~v~d~~~~ 97 (182)
.... .+..+++++|++++|+|+.+.
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 6543 456678899999999998754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=95.39 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=73.7
Q ss_pred CCCChhhhhhhCCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccC
Q 030122 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK 149 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~ 149 (182)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+....+..... ...+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~--~~~~~ 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERW--ISIYR 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHH--HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHH--HHHHH
Confidence 7888888888999999999999999886 88888888876543 68999999999999753210101111 11112
Q ss_pred CCceEEEEecccCCCCHHHHHHHHH
Q 030122 150 NRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
..+++++++||++|.|++++++.+.
T Consensus 140 ~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 140 DAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HCCCeEEEEECCCCCCHHHHHhhcc
Confidence 2245799999999999999998764
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-10 Score=86.06 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=60.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCC-----------------EEEEEEECCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~ 72 (182)
.....+|+++|++|||||||+|.|.+..... ...|+......+.+.+ ..+.+||+||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 3445799999999999999999999866522 2234555555666543 468999999953
Q ss_pred C-------ChhhhhhhCCCCCEEEEEEeCCC
Q 030122 73 S-------IRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 73 ~-------~~~~~~~~~~~~~~~i~v~d~~~ 96 (182)
. +...+...++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 33345566789999999999863
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-10 Score=88.89 Aligned_cols=100 Identities=18% Similarity=0.094 Sum_probs=67.7
Q ss_pred CCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhccccc
Q 030122 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKI 148 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~ 148 (182)
.+++|+..+..+.+.++++++|+|++++. ..|...+.+.. .+.|+++|+||+|+.+... .+.+.+.+. ...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMR-YSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHH-HHH
Confidence 45678888888999999999999998753 33433333322 4789999999999975432 222221110 001
Q ss_pred CCCc---eEEEEecccCCCCHHHHHHHHHHHH
Q 030122 149 KNRQ---WAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 149 ~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
+..+ ..++.+||++|.|++++++++.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 1112 2699999999999999999987654
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=84.53 Aligned_cols=153 Identities=11% Similarity=0.042 Sum_probs=88.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhh------cCCCcc-----ccCCC-----------ceeeEE-----------------E
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQ------MGEVVS-----TIPTI-----------GFNVET-----------------V 56 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~------~~~~~~-----~~~t~-----------~~~~~~-----------------~ 56 (182)
....|+++|.+||||||++++|. +.+..- +.+.. ++.... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998 332110 11100 111111 0
Q ss_pred EeCCEEEEEEECCCCCCCh-hhhhhh-----CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeE-EEEeeCCC
Q 030122 57 QYNNIKFQVWDLGGQTSIR-PYWRCY-----FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQD 129 (182)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~-~~~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~D 129 (182)
...++.+.++||||..... .++... +..+|.+++|+|........... ..+.. .+|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a---~~~~~-----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA---KAFKD-----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHH---HHHHH-----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHH---HHHHh-----hcCceEEEEeCCc
Confidence 1156789999999976532 222111 12689999999997654322222 22211 2574 89999999
Q ss_pred CCCCCCH-HHHHHhhccccc-----C-CC----ceEEEEecccCCCC-HHHHHHHHHHH
Q 030122 130 LPGALDD-AAVSEALELHKI-----K-NR----QWAIFKTCAIKGEG-LFEGMDWLSNT 176 (182)
Q Consensus 130 ~~~~~~~-~~~~~~~~~~~~-----~-~~----~~~~~~~Sa~~~~~-i~~~~~~l~~~ 176 (182)
....... ..+...++.+.. . -. -.+.+.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8754332 233333332210 0 00 11234689999999 99999888754
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-10 Score=86.79 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=68.1
Q ss_pred CCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhccccc
Q 030122 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKI 148 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~ 148 (182)
.+++|+.....+++.++++++|+|++++.+ .|...+... ..+.|+++|+||+|+.+... .+.+.+.+. ..+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~NK~DLl~~~~~~~~~~~~l~-~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVGNKADLLPRSVKYPKLLRWMR-RMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEEECGGGSCTTCCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEEEChhcCCCccCHHHHHHHHH-HHH
Confidence 478888988888899999999999998763 222222222 14789999999999976432 222222111 011
Q ss_pred CCCc---eEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 149 KNRQ---WAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+..+ ..++.+||++|.|++++++.+.+...
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 1112 36899999999999999999876553
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.8e-09 Score=79.80 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=35.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc---c--cCCCceeeEEEEe--CC--EEEEEEECCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---T--IPTIGFNVETVQY--NN--IKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~--~~t~~~~~~~~~~--~~--~~~~i~d~~g~~ 72 (182)
+...++++++|++|||||||++.|++..+.. . .+........+.. .. ..+.++|++|-.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 3344579999999999999999999875432 1 1211111111112 11 368899999754
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.9e-10 Score=84.72 Aligned_cols=110 Identities=9% Similarity=0.041 Sum_probs=66.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcC-----CCcc--ccCCCceeeEEEEeCCEEEEEEECCCCCCChh--------hhhhhC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG-----EVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYF 82 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~-----~~~~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~ 82 (182)
.+|+++|.+|+|||||+|.|.+. .... ..|........+... ..+.++||||-..... ....++
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 47999999999999999999976 2222 222222233333332 2378999999643221 112222
Q ss_pred --CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 83 --PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 83 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
...+.++++++....--+..+.. +......+.|+++++||.|....
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred cccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccc
Confidence 56799999998743211111110 11112257899999999998653
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-09 Score=80.95 Aligned_cols=113 Identities=7% Similarity=0.009 Sum_probs=65.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC------Ccc--ccCCCceeeEEEEeCCEEEEEEECCCCCCChh--------hhhhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE------VVS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCY 81 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~------~~~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~ 81 (182)
.+|+++|.+|+|||||+|+|.+.. ... ..|........+.+. ..+.++||||-..... ....+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 579999999999999999999752 111 111111222233332 1378999999643221 11112
Q ss_pred --CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH
Q 030122 82 --FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD 136 (182)
Q Consensus 82 --~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~ 136 (182)
....+.++++++......+..+.. +......+.|+++++||+|.......
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEH
T ss_pred ccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccH
Confidence 246788999998643211111110 11112257899999999998764443
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.77 E-value=5.6e-09 Score=76.50 Aligned_cols=100 Identities=17% Similarity=0.137 Sum_probs=66.4
Q ss_pred EEECCCCCC-ChhhhhhhCCCCCEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHH
Q 030122 65 VWDLGGQTS-IRPYWRCYFPNTEAVIYVVDSSDTDRIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSE 141 (182)
Q Consensus 65 i~d~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~ 141 (182)
+...||+.. ........+.++|+++.|+|+.++.+.. .+..+ + .++|.++|+||+|+.+....+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~----l-----~~kp~ilVlNK~DL~~~~~~~~~~~ 73 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI----L-----KNKPRIMLLNKADKADAAVTQQWKE 73 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH----C-----SSSCEEEEEECGGGSCHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH----H-----CCCCEEEEEECcccCCHHHHHHHHH
Confidence 345788753 3445666788999999999999887654 33332 1 5789999999999986322222222
Q ss_pred hhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 142 ALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.+ +..+++++.+||+++.|++++++.+.+.+.
T Consensus 74 ~~-----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 74 HF-----ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HH-----HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HH-----HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 22 122346999999999999999998877654
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.1e-09 Score=75.50 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=35.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCcee--eEEEEeCCEEEEEEECCCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFN--VETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~d~~g~~~ 73 (182)
++++++|.+|+|||||+|+|.+.......++.|.. ...+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 59999999999999999999987764433333321 112222 34789999999654
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-07 Score=68.68 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=61.5
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc----------ccCCCceeeEEEEe------CCEEEEEEECCCCCCC------
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS----------TIPTIGFNVETVQY------NNIKFQVWDLGGQTSI------ 74 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~----------~~~t~~~~~~~~~~------~~~~~~i~d~~g~~~~------ 74 (182)
.++++++|+.|||||||++.+++..... ...+.. ...+.+ -...+.++|++|-...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~--~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE--IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS--CCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee--eeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 3789999999999999999999743221 011111 111222 1236789999874221
Q ss_pred -hhh-----------hhh----------hCCCCCEEEEEEeCC-CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 75 -RPY-----------WRC----------YFPNTEAVIYVVDSS-DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 75 -~~~-----------~~~----------~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
... ... .+..+++.++++|.. .+-+-.+ ...+..+.. . .++++|++|+|..
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----V-VNIIPVIAKADTM 153 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----T-SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----c-CcEEEEEeccccC
Confidence 000 001 122468888999854 2222112 233333322 3 8999999999987
Q ss_pred CC
Q 030122 132 GA 133 (182)
Q Consensus 132 ~~ 133 (182)
..
T Consensus 154 t~ 155 (270)
T 3sop_A 154 TL 155 (270)
T ss_dssp CH
T ss_pred CH
Confidence 54
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-07 Score=70.50 Aligned_cols=155 Identities=15% Similarity=0.021 Sum_probs=81.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCcee----eEEEEeCC-EEEEEEECCCCCC----Chh-hhhhhCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFN----VETVQYNN-IKFQVWDLGGQTS----IRP-YWRCYFPN 84 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~----~~~~~~~~-~~~~i~d~~g~~~----~~~-~~~~~~~~ 84 (182)
...++++|++|||||||+|.+.+..... ....-+.. ........ -.+.++|++|-.. ... +....+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3489999999999999999999843222 00000100 01111121 2578899998421 111 11112233
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC---------CCCCHHHHHHhhcccc----cC--
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP---------GALDDAAVSEALELHK----IK-- 149 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~---------~~~~~~~~~~~~~~~~----~~-- 149 (182)
.+..++ ++...... .-......+.. .+.|+++|.||.|+. +.....++.+.+.... .+
T Consensus 149 ~~~~~~-lS~G~~~k--qrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 149 YDFFII-ISATRFKK--NDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp CSEEEE-EESSCCCH--HHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCeEE-eCCCCccH--HHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455554 77652111 11112222322 468999999999863 2223333322221110 00
Q ss_pred CCceEEEEecc--cCCCCHHHHHHHHHHHHh
Q 030122 150 NRQWAIFKTCA--IKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~Sa--~~~~~i~~~~~~l~~~i~ 178 (182)
.....++.+|+ ..+.|++++.+.+.+.+.
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 01124788898 566679999999887654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-08 Score=73.15 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=36.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCce--eeEEEEeCCEEEEEEECCCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGF--NVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~d~~g~~ 72 (182)
...++|+++|.||+|||||+|++.+.......++.+. ....+.. +..+.++||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 3468999999999999999999998764442222221 1112222 3368899999964
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.8e-07 Score=69.46 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=63.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhc------CCCc----c-ccC-----------CCceeeEEE--------------Ee--
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM------GEVV----S-TIP-----------TIGFNVETV--------------QY-- 58 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~------~~~~----~-~~~-----------t~~~~~~~~--------------~~-- 58 (182)
...|+++|++||||||++..|.. .... + +.+ ..++..... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999998873 1110 0 101 011111100 00
Q ss_pred -CCEEEEEEECCCCCCChh-hhh-----hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 59 -NNIKFQVWDLGGQTSIRP-YWR-----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 59 -~~~~~~i~d~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
.++.+.++||+|...... +.. .....+|.+++|+|+............+.. .-.+..+|+||.|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~-------~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKE-------ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH-------SCTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHh-------hCCCeEEEEECCCCc
Confidence 347899999999654322 111 112257999999998764433222222222 123567899999987
Q ss_pred C
Q 030122 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 253 ~ 253 (443)
T 3dm5_A 253 A 253 (443)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8.9e-07 Score=70.85 Aligned_cols=59 Identities=15% Similarity=-0.044 Sum_probs=40.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCc-cc-----cCCCceeeEEEEe---CCEEEEEEECCCCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVV-ST-----IPTIGFNVETVQY---NNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~-~~-----~~t~~~~~~~~~~---~~~~~~i~d~~g~~~ 73 (182)
...++|+|+|.||+|||||+|+|.+.... .. ..|.++......+ .+..+.++||||-..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 34578999999999999999999987632 21 2233332222211 467899999999643
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=67.77 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=62.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcC------CCc----c-cc-----------------------CCCc---eeeEEEE-eC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG------EVV----S-TI-----------------------PTIG---FNVETVQ-YN 59 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~------~~~----~-~~-----------------------~t~~---~~~~~~~-~~ 59 (182)
..|+++|++|+||||++..|... ... + +. .+.. +....+. ..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 47999999999999999998862 110 0 00 0000 0000000 15
Q ss_pred CEEEEEEECCCCCCChh-hhh-----hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCC-e-EEEEeeCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRP-YWR-----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGA-V-ALIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-~i~v~nK~D~~ 131 (182)
++.+.++||+|...... +.. ..+..+|.+++|+|...... .......+ . ... | ..+|+||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCCc
Confidence 67899999999765422 111 11236899999999865432 22222222 1 234 5 88999999986
Q ss_pred C
Q 030122 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 252 ~ 252 (432)
T 2v3c_C 252 A 252 (432)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=98.22 E-value=5.5e-08 Score=76.16 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=56.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe----CCEEEEEEECCCCC--CChhhh--------hh
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQT--SIRPYW--------RC 80 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~d~~g~~--~~~~~~--------~~ 80 (182)
..+..|+++|.+||||||+.++|.........++..+....+.. ......+||..|.+ +.+..+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999754321122222211111101 11344678888863 223333 45
Q ss_pred hCCCCCEEEEEEeCCCcchHHHHHHHHHHH
Q 030122 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAI 110 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 110 (182)
++....+.++|+|.++. +.+....|+..+
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 56567888999999987 444444554444
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-06 Score=70.16 Aligned_cols=23 Identities=9% Similarity=-0.247 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.|+|+|+.|||||||++.+.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 59999999999999999999864
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=5.4e-07 Score=65.24 Aligned_cols=92 Identities=11% Similarity=-0.005 Sum_probs=58.1
Q ss_pred CCCCCCC-hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc
Q 030122 68 LGGQTSI-RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH 146 (182)
Q Consensus 68 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~ 146 (182)
.|||... .......+.++|+++.|+|+.++.+..... + . .. ++|.++|+||+|+.+....+.+.+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l-~--ll-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----V-D--FS-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----S-C--CT-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----H-H--hc-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 5776543 335566788999999999999886543210 1 1 11 789999999999986322223333221
Q ss_pred ccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 147 KIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
..++++ .+||+++.|++++++.+.
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCC
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHH
Confidence 123346 999999999999887754
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-06 Score=64.49 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=59.0
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC----HHHHHHhhcccc
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVSEALELHK 147 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~----~~~~~~~~~~~~ 147 (182)
+-..+.+..+.++|.+++|+|+.++.. ...+..++... . ..++|.++|+||+|+.+... .+.+.+.+.
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~-~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~--- 147 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV-E---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR--- 147 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH-H---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH---
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH-H---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHH---
Confidence 333445556789999999999987654 33333332222 2 26899999999999986532 223333331
Q ss_pred cCCCceEEEEecccCCCCHHHHHHH
Q 030122 148 IKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
..+++++.+|+.++.|++++++.
T Consensus 148 --~~g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 148 --NIGYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp --HHTCCEEECCHHHHTTCTTTGGG
T ss_pred --hCCCeEEEEecCCCCCHHHHHhh
Confidence 12245999999999998876643
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=62.34 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=62.5
Q ss_pred eeEEEEEecCCCChHHHHHHhhc------CCCcc-----cc-----------CCCceeeEE--------------EE---
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM------GEVVS-----TI-----------PTIGFNVET--------------VQ--- 57 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~------~~~~~-----~~-----------~t~~~~~~~--------------~~--- 57 (182)
...|+++|++||||||++..|.. ....- +. ...++.... +.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 45789999999999999999873 11100 00 011111110 00
Q ss_pred eCCEEEEEEECCCCCC--Chh-hhhh-----hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q 030122 58 YNNIKFQVWDLGGQTS--IRP-YWRC-----YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~--~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
..++.+.++||+|... ... +... .....+.+++|+|.............+... -.+..+|+||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence 1367889999999644 211 1110 112468999999987654333333333322 135788999999
Q ss_pred CCC
Q 030122 130 LPG 132 (182)
Q Consensus 130 ~~~ 132 (182)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 864
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.91 E-value=1.1e-05 Score=59.51 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=62.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhc------CCCc----c-ccCC-----------CceeeEE-----------------EE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM------GEVV----S-TIPT-----------IGFNVET-----------------VQ 57 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~------~~~~----~-~~~t-----------~~~~~~~-----------------~~ 57 (182)
.-.|+++|++|+||||++..+.. .+.. + +.+. .++.... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 34688899999999999998873 1110 0 1110 0111000 01
Q ss_pred eCCEEEEEEECCCCCC--Chh-hhh-----hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCC
Q 030122 58 YNNIKFQVWDLGGQTS--IRP-YWR-----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQ 128 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~ 128 (182)
...+.+.++||||... ... +.. .....+|.+++|+|..... ........+.. ..| ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1467899999999776 322 221 1233689999999986432 22222222221 245 67899999
Q ss_pred CCCC
Q 030122 129 DLPG 132 (182)
Q Consensus 129 D~~~ 132 (182)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9763
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00011 Score=55.32 Aligned_cols=82 Identities=13% Similarity=0.077 Sum_probs=51.9
Q ss_pred hCCCCCEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---HHHHHHhhcccccCCCceEEE
Q 030122 81 YFPNTEAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 156 (182)
...++|.+++|... +|.. ...+..++.... ..++|.++|+||+|+.+... .+++...+ ...+++++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y-----~~~G~~v~ 196 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIY-----RNIGYRVL 196 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHH-----HTTTCCEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHH-----HhCCCcEE
Confidence 35789999988665 4543 333333332221 25788899999999986422 11222222 23445699
Q ss_pred EecccCCCCHHHHHHH
Q 030122 157 KTCAIKGEGLFEGMDW 172 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~ 172 (182)
.+|+.++.|++++...
T Consensus 197 ~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEA 212 (358)
T ss_dssp ECBTTTTBTHHHHHHH
T ss_pred EEecCCCcCHHHHHHh
Confidence 9999999999987654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.68 E-value=2.1e-05 Score=53.52 Aligned_cols=22 Identities=5% Similarity=-0.218 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999988864
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=6e-05 Score=58.44 Aligned_cols=24 Identities=13% Similarity=-0.355 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.-|.|+|++++|||+|+|+|++.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 345999999999999999999853
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=5.9e-05 Score=52.08 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=22.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhc
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
++.....|++.|++||||||+.+.|..
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344446799999999999999998874
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=4.1e-05 Score=52.06 Aligned_cols=22 Identities=9% Similarity=-0.129 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999864
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.57 E-value=3.9e-05 Score=52.40 Aligned_cols=23 Identities=9% Similarity=-0.233 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.|+++|++||||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999999865
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00039 Score=53.83 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=62.0
Q ss_pred eeEEEEEecCCCChHHHHHHhh-------cCCCc-----cccCC-----------CceeeEE--------------E---
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQ-------MGEVV-----STIPT-----------IGFNVET--------------V--- 56 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~-------~~~~~-----~~~~t-----------~~~~~~~--------------~--- 56 (182)
...|+++|.+|+||||++..|. +.+.. .+.+. .++.... +
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 3468889999999999999987 22211 01110 0111000 0
Q ss_pred EeCCEEEEEEECCCCCCCh-hhhh-----hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCC
Q 030122 57 QYNNIKFQVWDLGGQTSIR-PYWR-----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQD 129 (182)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D 129 (182)
...++.+.++||||..... .+.. ..+..++.+++|+|....... ......+.. ..+ .-+|+||.|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~-----~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE-----ALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH-----HSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc-----cCCCeEEEEecCC
Confidence 1146789999999976542 2221 123468999999998754332 222222211 233 346899999
Q ss_pred CCCC
Q 030122 130 LPGA 133 (182)
Q Consensus 130 ~~~~ 133 (182)
....
T Consensus 252 ~~~~ 255 (433)
T 2xxa_A 252 GDAR 255 (433)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8643
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=3.6e-05 Score=53.22 Aligned_cols=21 Identities=10% Similarity=-0.258 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|++|||||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.54 E-value=5.7e-05 Score=52.13 Aligned_cols=30 Identities=13% Similarity=0.005 Sum_probs=23.4
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhc
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
++..+.....|++.|++||||||+.+.|..
T Consensus 13 ~~~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 13 GLVPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp ---CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344556667899999999999999999864
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=5.2e-05 Score=53.71 Aligned_cols=29 Identities=10% Similarity=-0.077 Sum_probs=21.6
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhc
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...+....+|+|+|++||||||+.+.|..
T Consensus 10 ~~~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 10 VPESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp ----CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33344446899999999999999999874
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00063 Score=46.80 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=47.5
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCC
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~ 132 (182)
..+.+.++|+|+.. .......+..+|.++++...+... ..+...+..+..... ..+.++.+|+|+.|...
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 35789999999865 334455566799999999876544 555555555433221 24678899999999543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.49 E-value=5e-05 Score=52.44 Aligned_cols=22 Identities=14% Similarity=-0.121 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|+++|++||||||+++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.49 E-value=6.6e-05 Score=51.86 Aligned_cols=27 Identities=7% Similarity=-0.227 Sum_probs=22.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
+...-.|+++|++|||||||++.|...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 334446899999999999999999853
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=7.7e-05 Score=50.30 Aligned_cols=22 Identities=5% Similarity=-0.127 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4699999999999999999986
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=5.5e-05 Score=51.00 Aligned_cols=20 Identities=10% Similarity=-0.157 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999654
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=97.46 E-value=8.2e-05 Score=52.22 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=20.4
Q ss_pred CcceeE-EEEEecCCCChHHHHHHhhc
Q 030122 14 PCTHVL-GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 14 ~~~~~~-i~viG~~~~GKssl~~~l~~ 39 (182)
...+.| |+++|+|||||+|.+.+|..
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 334445 56789999999999998874
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.43 E-value=9e-05 Score=51.52 Aligned_cols=24 Identities=13% Similarity=-0.148 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|+++|++|||||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998874
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.43 E-value=7.7e-05 Score=49.92 Aligned_cols=20 Identities=10% Similarity=-0.189 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHHh
Q 030122 18 VLGFSFFIDNFGNLCDTDRL 37 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l 37 (182)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.42 E-value=7.9e-05 Score=51.03 Aligned_cols=21 Identities=10% Similarity=-0.243 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|+++||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999853
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.41 E-value=7.1e-05 Score=51.99 Aligned_cols=23 Identities=9% Similarity=-0.208 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999988643
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=8.5e-05 Score=51.72 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
++|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.41 E-value=7.2e-05 Score=52.04 Aligned_cols=23 Identities=9% Similarity=-0.188 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-|+++|++||||||+++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 68999999999999999998653
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.41 E-value=7.3e-05 Score=52.47 Aligned_cols=22 Identities=9% Similarity=-0.231 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999998864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=7.5e-05 Score=52.51 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-++++|+.|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999988643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00011 Score=51.09 Aligned_cols=22 Identities=9% Similarity=-0.301 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|+.|||||||++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.38 E-value=9.1e-05 Score=51.31 Aligned_cols=23 Identities=4% Similarity=-0.256 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|+++|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998753
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0001 Score=49.27 Aligned_cols=21 Identities=14% Similarity=-0.240 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.36 E-value=9.2e-05 Score=49.67 Aligned_cols=22 Identities=14% Similarity=-0.198 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00015 Score=48.71 Aligned_cols=22 Identities=5% Similarity=-0.041 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|++||||||+++.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=52.32 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~ 38 (182)
..|+++|++||||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.34 E-value=9.8e-05 Score=50.96 Aligned_cols=24 Identities=13% Similarity=-0.107 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~ 41 (182)
..|+++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999988653
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0001 Score=50.29 Aligned_cols=21 Identities=19% Similarity=0.034 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 588999999999999999974
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=51.09 Aligned_cols=22 Identities=5% Similarity=-0.061 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00013 Score=50.87 Aligned_cols=21 Identities=10% Similarity=-0.058 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00011 Score=50.65 Aligned_cols=22 Identities=5% Similarity=-0.150 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|++||||||+++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00017 Score=49.13 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999874
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00014 Score=48.51 Aligned_cols=23 Identities=13% Similarity=-0.122 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999998754
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00014 Score=50.11 Aligned_cols=21 Identities=10% Similarity=-0.224 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+++|++||||||+.+.|..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999874
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00014 Score=51.73 Aligned_cols=22 Identities=5% Similarity=-0.257 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988754
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=49.01 Aligned_cols=22 Identities=14% Similarity=-0.242 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0002 Score=48.79 Aligned_cols=22 Identities=14% Similarity=-0.097 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0002 Score=48.63 Aligned_cols=22 Identities=14% Similarity=-0.061 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999873
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00015 Score=49.80 Aligned_cols=21 Identities=10% Similarity=-0.157 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00018 Score=50.16 Aligned_cols=21 Identities=5% Similarity=-0.243 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00015 Score=50.05 Aligned_cols=22 Identities=5% Similarity=-0.135 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00018 Score=54.29 Aligned_cols=24 Identities=8% Similarity=-0.154 Sum_probs=21.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV 42 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~ 42 (182)
.++++|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997554
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00017 Score=49.71 Aligned_cols=21 Identities=5% Similarity=-0.396 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999876
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00017 Score=50.80 Aligned_cols=22 Identities=9% Similarity=-0.256 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988754
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00024 Score=48.84 Aligned_cols=25 Identities=8% Similarity=-0.307 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
....|++.|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4468999999999999999998764
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00022 Score=48.63 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00015 Score=49.73 Aligned_cols=22 Identities=9% Similarity=-0.189 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+++++|+.|||||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998863
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00013 Score=49.31 Aligned_cols=23 Identities=4% Similarity=-0.409 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00024 Score=50.66 Aligned_cols=24 Identities=8% Similarity=-0.172 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...+|++.|++||||||+.++|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=48.46 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00023 Score=49.21 Aligned_cols=22 Identities=5% Similarity=-0.384 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00018 Score=49.68 Aligned_cols=22 Identities=9% Similarity=-0.078 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|++||||||+.+.+.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=48.57 Aligned_cols=22 Identities=5% Similarity=-0.109 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00024 Score=48.01 Aligned_cols=22 Identities=9% Similarity=-0.206 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999873
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00026 Score=51.76 Aligned_cols=24 Identities=4% Similarity=-0.294 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|++.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999964
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00026 Score=48.16 Aligned_cols=23 Identities=4% Similarity=-0.125 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|+++|++||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998754
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0002 Score=50.16 Aligned_cols=22 Identities=5% Similarity=-0.355 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00023 Score=50.73 Aligned_cols=23 Identities=4% Similarity=-0.272 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988643
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00023 Score=50.62 Aligned_cols=22 Identities=14% Similarity=-0.179 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00027 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.036 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+++.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00021 Score=52.74 Aligned_cols=21 Identities=14% Similarity=-0.222 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|++|||||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 799999999999999999874
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00021 Score=51.99 Aligned_cols=23 Identities=4% Similarity=-0.239 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999888643
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00022 Score=51.55 Aligned_cols=23 Identities=9% Similarity=-0.205 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999888643
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00021 Score=50.03 Aligned_cols=21 Identities=14% Similarity=-0.078 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|++|||||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00022 Score=49.88 Aligned_cols=22 Identities=5% Similarity=-0.189 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998764
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00024 Score=50.83 Aligned_cols=23 Identities=13% Similarity=-0.309 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0002 Score=51.66 Aligned_cols=21 Identities=10% Similarity=-0.160 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|+.||||||+++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 699999999999999999875
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00029 Score=50.53 Aligned_cols=21 Identities=10% Similarity=-0.309 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~ 38 (182)
..|+++|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00024 Score=49.66 Aligned_cols=22 Identities=14% Similarity=-0.084 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00037 Score=48.25 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...|++.|.+||||||+++.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00025 Score=50.57 Aligned_cols=22 Identities=9% Similarity=-0.380 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00026 Score=49.76 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00022 Score=49.74 Aligned_cols=22 Identities=9% Similarity=-0.068 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00025 Score=51.29 Aligned_cols=22 Identities=9% Similarity=-0.263 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999998864
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00023 Score=47.89 Aligned_cols=21 Identities=10% Similarity=-0.249 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00025 Score=49.67 Aligned_cols=22 Identities=5% Similarity=-0.138 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00027 Score=49.99 Aligned_cols=23 Identities=9% Similarity=-0.344 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988643
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00024 Score=51.11 Aligned_cols=23 Identities=4% Similarity=-0.205 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988643
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00025 Score=48.01 Aligned_cols=154 Identities=8% Similarity=-0.017 Sum_probs=66.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhh----CCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY----FPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~----~~~~~~~i~v~d 93 (182)
..+++.|++|||||||++++...-. ..+.....+......+ -+|.+|.+.++-....+ ........++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~-----~~g~~v~~i~~~~~~~-~id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~ 80 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDM-DVDKPGKDSYELRKAGAAQTIVASQQRWALMTE 80 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc-----ccCCceeEEeeCCCcc-ccCCCCCceEEEEeCCcceeecccchhheeeee
Confidence 3689999999999999999985311 1122233333322222 13555654433211111 011122222333
Q ss_pred C--CCcchHHHHHHHHHHH------HhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc--CCCceEEEEecccCC
Q 030122 94 S--SDTDRIQTAKEEFHAI------LEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI--KNRQWAIFKTCAIKG 163 (182)
Q Consensus 94 ~--~~~~s~~~~~~~~~~~------~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~ 163 (182)
. .....++.+...+... .+.......|.+++.+|.+..+................ ....++.|..
T Consensus 81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~~~~~~~~~~~~i~av~~d~~~~~~~p~~~~----- 155 (174)
T 1np6_A 81 TPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDI----- 155 (174)
T ss_dssp CSSSCCCCHHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSSCCGGGCCCCTTEEEEEESSCCCCSSEEEET-----
T ss_pred ccCCchhhHHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccCCcccCccCCCCEEEEEecCCccCCCCcCCc-----
Confidence 1 2234566665433211 11123356899999998864321000000000000000 0012233322
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 030122 164 EGLFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~~s 182 (182)
..++++.+++.+.+.+.+|
T Consensus 156 ~d~~~ia~~i~~~~~~~~~ 174 (174)
T 1np6_A 156 NDVEGLADFVVEWMQKQNG 174 (174)
T ss_dssp TCHHHHHHHHHHHHTTCCC
T ss_pred cCHHHHHHHHHHHHHhhcC
Confidence 5688888898887766553
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00043 Score=47.04 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00028 Score=49.54 Aligned_cols=21 Identities=10% Similarity=-0.088 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00034 Score=47.78 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0003 Score=50.74 Aligned_cols=22 Identities=9% Similarity=-0.331 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998864
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0003 Score=50.83 Aligned_cols=22 Identities=9% Similarity=-0.171 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 6899999999999999988864
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0003 Score=50.08 Aligned_cols=23 Identities=4% Similarity=-0.178 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988643
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00016 Score=51.00 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=15.0
Q ss_pred EEEEEecCCCChHHHHHHhh-cC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ-MG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~-~~ 40 (182)
.|+++|+.||||||+++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00031 Score=49.08 Aligned_cols=22 Identities=5% Similarity=-0.198 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.+|+++|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00031 Score=50.33 Aligned_cols=23 Identities=9% Similarity=-0.168 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999987643
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00026 Score=52.49 Aligned_cols=24 Identities=13% Similarity=-0.166 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|+++|+.|||||||++.+.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 345799999999999999998875
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00051 Score=47.51 Aligned_cols=23 Identities=17% Similarity=-0.078 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|+++|++||||||+++.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999864
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.07 E-value=9.8e-05 Score=54.53 Aligned_cols=23 Identities=4% Similarity=-0.211 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|++|||||||+|.+.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 79999999999999999998654
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00031 Score=46.78 Aligned_cols=21 Identities=10% Similarity=-0.202 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00039 Score=51.63 Aligned_cols=26 Identities=12% Similarity=-0.121 Sum_probs=21.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhc
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....+-|+++|++|||||||++.+.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999998864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00044 Score=46.99 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|++.|.+||||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00034 Score=50.15 Aligned_cols=22 Identities=9% Similarity=-0.174 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00032 Score=50.87 Aligned_cols=23 Identities=13% Similarity=-0.203 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988653
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00033 Score=50.39 Aligned_cols=23 Identities=4% Similarity=-0.276 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988643
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00039 Score=49.10 Aligned_cols=25 Identities=4% Similarity=-0.275 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
....|++.|+.||||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999998764
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00034 Score=50.63 Aligned_cols=22 Identities=9% Similarity=-0.133 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00033 Score=51.04 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999888643
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00033 Score=47.97 Aligned_cols=22 Identities=14% Similarity=-0.016 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0041 Score=43.12 Aligned_cols=68 Identities=4% Similarity=-0.094 Sum_probs=46.7
Q ss_pred CCEEEEEEECCCC-CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 59 NNIKFQVWDLGGQ-TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~i~d~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
..+.+.++|+|+. ... .....+..+|.+|++...+ ..++..+...+..+.... +.++.+|+|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 4578999999986 433 3344566799999999765 455566666555554422 567889999998764
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00036 Score=47.99 Aligned_cols=23 Identities=13% Similarity=-0.044 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|++.|++||||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00043 Score=50.99 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV 42 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~ 42 (182)
.++++|++|||||||++.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 689999999999999999987543
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00036 Score=50.14 Aligned_cols=23 Identities=13% Similarity=-0.162 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988653
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00031 Score=50.38 Aligned_cols=24 Identities=8% Similarity=-0.267 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|+++|++||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00049 Score=50.45 Aligned_cols=26 Identities=8% Similarity=-0.142 Sum_probs=21.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhc
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
......|++.|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999988763
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00016 Score=48.77 Aligned_cols=21 Identities=10% Similarity=-0.107 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|++|||||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00039 Score=50.33 Aligned_cols=22 Identities=5% Similarity=-0.389 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999998864
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00027 Score=47.79 Aligned_cols=22 Identities=9% Similarity=-0.115 Sum_probs=15.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00034 Score=50.17 Aligned_cols=21 Identities=10% Similarity=-0.072 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|+++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999864
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00034 Score=47.37 Aligned_cols=21 Identities=14% Similarity=-0.034 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00045 Score=49.43 Aligned_cols=26 Identities=8% Similarity=-0.282 Sum_probs=21.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhc
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....+.|++.|++||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 33456899999999999999998865
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00029 Score=46.36 Aligned_cols=22 Identities=5% Similarity=-0.100 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998853
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00042 Score=50.07 Aligned_cols=23 Identities=4% Similarity=-0.294 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00058 Score=47.13 Aligned_cols=24 Identities=8% Similarity=-0.110 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|+++|++||||||+++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998874
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00034 Score=50.81 Aligned_cols=21 Identities=5% Similarity=-0.233 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998853
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00047 Score=47.78 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+++.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00043 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.037 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00039 Score=51.23 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
.++++|++|||||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00031 Score=53.15 Aligned_cols=24 Identities=8% Similarity=-0.165 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-+++++|+.|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999998864
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00019 Score=49.79 Aligned_cols=21 Identities=19% Similarity=-0.013 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00042 Score=49.51 Aligned_cols=21 Identities=5% Similarity=-0.211 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998854
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00053 Score=50.27 Aligned_cols=23 Identities=9% Similarity=-0.344 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999888643
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00042 Score=52.30 Aligned_cols=21 Identities=10% Similarity=-0.154 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+++|+.||||||+++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999875
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00047 Score=46.09 Aligned_cols=21 Identities=14% Similarity=-0.108 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00047 Score=49.60 Aligned_cols=22 Identities=14% Similarity=0.005 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00049 Score=51.87 Aligned_cols=23 Identities=17% Similarity=-0.067 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999988754
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00058 Score=48.63 Aligned_cols=22 Identities=9% Similarity=-0.233 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|+.||||||+++.+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00032 Score=51.83 Aligned_cols=22 Identities=9% Similarity=-0.413 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 7899999999999999988753
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00071 Score=49.96 Aligned_cols=23 Identities=13% Similarity=-0.168 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...|+++|+.|||||||++.|.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0005 Score=46.34 Aligned_cols=23 Identities=9% Similarity=-0.136 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988753
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00048 Score=50.80 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|+.||||||+++.+.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3799999999999999999874
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00061 Score=45.83 Aligned_cols=21 Identities=5% Similarity=-0.143 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+.+.|++||||||++.++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00073 Score=47.10 Aligned_cols=23 Identities=4% Similarity=-0.295 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999875
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0006 Score=50.90 Aligned_cols=22 Identities=5% Similarity=-0.331 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999864
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00054 Score=47.96 Aligned_cols=21 Identities=5% Similarity=-0.338 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999884
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00082 Score=48.97 Aligned_cols=24 Identities=17% Similarity=-0.099 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|++.|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00061 Score=51.51 Aligned_cols=22 Identities=9% Similarity=-0.210 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999864
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00061 Score=51.47 Aligned_cols=23 Identities=9% Similarity=-0.165 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58999999999999999888643
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00062 Score=51.28 Aligned_cols=23 Identities=9% Similarity=-0.275 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999988653
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00071 Score=45.11 Aligned_cols=21 Identities=10% Similarity=-0.121 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00058 Score=50.32 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.++++|+.||||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999886
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0007 Score=47.97 Aligned_cols=23 Identities=9% Similarity=-0.174 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~ 38 (182)
..+.|++.|++||||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999887
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00064 Score=51.29 Aligned_cols=23 Identities=9% Similarity=-0.282 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 58999999999999999988743
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00062 Score=51.66 Aligned_cols=21 Identities=10% Similarity=-0.160 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+++|++||||||+++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999875
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00065 Score=51.62 Aligned_cols=23 Identities=9% Similarity=-0.226 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 58999999999999999988744
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00094 Score=47.15 Aligned_cols=24 Identities=4% Similarity=-0.220 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|++.|++||||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 445799999999999999999874
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00066 Score=51.28 Aligned_cols=23 Identities=4% Similarity=-0.362 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999988753
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00084 Score=49.16 Aligned_cols=22 Identities=5% Similarity=-0.127 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999885
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00077 Score=47.62 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
-+++++++|+|||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357999999999999999998865
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00088 Score=45.18 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00066 Score=49.67 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-++++|++|+|||||+..+.+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999998875
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00091 Score=45.94 Aligned_cols=25 Identities=12% Similarity=-0.168 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-+..|++.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999988753
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00064 Score=50.71 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-.|+++|+.||||||+++.+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999886
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00065 Score=49.27 Aligned_cols=21 Identities=5% Similarity=-0.211 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999998854
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00064 Score=50.75 Aligned_cols=22 Identities=5% Similarity=-0.195 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998854
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00072 Score=51.29 Aligned_cols=23 Identities=9% Similarity=-0.109 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58999999999999999988654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00075 Score=51.17 Aligned_cols=23 Identities=9% Similarity=-0.135 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999988743
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00074 Score=46.90 Aligned_cols=21 Identities=10% Similarity=-0.141 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00075 Score=46.86 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+++.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00082 Score=53.14 Aligned_cols=23 Identities=9% Similarity=-0.119 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|++||||||+++.+.+.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999988643
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00072 Score=48.46 Aligned_cols=22 Identities=5% Similarity=-0.179 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00072 Score=52.09 Aligned_cols=22 Identities=5% Similarity=-0.312 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|+|+|+.||||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998853
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00081 Score=47.44 Aligned_cols=22 Identities=14% Similarity=-0.103 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999863
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00077 Score=48.50 Aligned_cols=25 Identities=8% Similarity=-0.441 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
+...|+|.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4467999999999999999988743
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00082 Score=48.06 Aligned_cols=21 Identities=5% Similarity=-0.268 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||++++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 599999999999999999875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00099 Score=46.75 Aligned_cols=22 Identities=5% Similarity=-0.271 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.+++.|++|+|||++++.+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00069 Score=45.51 Aligned_cols=23 Identities=9% Similarity=-0.075 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0011 Score=50.58 Aligned_cols=22 Identities=5% Similarity=-0.407 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999988864
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=49.96 Aligned_cols=23 Identities=13% Similarity=-0.139 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 89999999999999999998764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00061 Score=51.19 Aligned_cols=23 Identities=4% Similarity=-0.301 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 68999999999999999988643
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00099 Score=50.27 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|+.||||||+++.+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3699999999999999999886
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0011 Score=45.57 Aligned_cols=22 Identities=5% Similarity=-0.281 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..+++.|++|+|||+|+..+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.001 Score=51.94 Aligned_cols=23 Identities=9% Similarity=-0.263 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
+++++|+.|||||||++-+.+..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 79999999999999999988743
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=44.32 Aligned_cols=21 Identities=10% Similarity=-0.058 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-.+++|+.|||||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=52.04 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|+.||||||+++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4699999999999999999875
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00093 Score=46.33 Aligned_cols=21 Identities=10% Similarity=-0.331 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.||||+|||+++..+.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0011 Score=49.07 Aligned_cols=23 Identities=4% Similarity=-0.159 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-+++.|+.|||||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00061 Score=51.33 Aligned_cols=23 Identities=4% Similarity=-0.379 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999988653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=47.65 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999885
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0049 Score=47.83 Aligned_cols=21 Identities=14% Similarity=-0.284 Sum_probs=17.9
Q ss_pred eEEEEEecCCCChHHHHHHhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~ 38 (182)
.-|.|+|+.++|||+|+|.|+
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 347799999999999999654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=49.83 Aligned_cols=21 Identities=10% Similarity=-0.292 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999999884
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0016 Score=45.93 Aligned_cols=21 Identities=5% Similarity=-0.200 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-+++.|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888763
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0017 Score=45.83 Aligned_cols=25 Identities=4% Similarity=-0.275 Sum_probs=21.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhc
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.....|+++|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445899999999999999998875
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=50.52 Aligned_cols=23 Identities=9% Similarity=-0.237 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
+++++|+.|||||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999999999998754
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=45.02 Aligned_cols=21 Identities=10% Similarity=-0.239 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998874
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=45.64 Aligned_cols=21 Identities=10% Similarity=-0.179 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0025 Score=49.08 Aligned_cols=23 Identities=4% Similarity=-0.155 Sum_probs=20.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
..-|+++|++||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999874
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=47.82 Aligned_cols=23 Identities=9% Similarity=-0.204 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||++++.+.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=47.68 Aligned_cols=22 Identities=5% Similarity=-0.174 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-+++.|+||+|||++++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3577779999999999999874
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0023 Score=46.93 Aligned_cols=23 Identities=4% Similarity=-0.302 Sum_probs=19.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999986653
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=46.45 Aligned_cols=22 Identities=5% Similarity=-0.156 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0023 Score=47.53 Aligned_cols=22 Identities=14% Similarity=-0.220 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=47.23 Aligned_cols=23 Identities=4% Similarity=-0.208 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||++++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999999753
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0019 Score=42.06 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~ 41 (182)
..|++.|++|+|||++.+.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999887543
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0021 Score=43.61 Aligned_cols=21 Identities=10% Similarity=-0.208 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|+|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0017 Score=47.70 Aligned_cols=22 Identities=5% Similarity=-0.173 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|++.|++|+|||++++.+.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5999999999999999998853
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0018 Score=48.63 Aligned_cols=22 Identities=14% Similarity=-0.127 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-+.++|++|||||||+..++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0023 Score=42.05 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
-.+++|+.|+|||||+..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999976
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0022 Score=51.58 Aligned_cols=22 Identities=5% Similarity=-0.339 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7999999999999999988764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=47.82 Aligned_cols=22 Identities=9% Similarity=-0.224 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999999875
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0023 Score=43.97 Aligned_cols=21 Identities=10% Similarity=-0.172 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.003 Score=47.47 Aligned_cols=24 Identities=13% Similarity=-0.115 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...+|+++|++|+||||+.+.+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999987764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0024 Score=50.86 Aligned_cols=23 Identities=9% Similarity=-0.239 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988743
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0033 Score=46.02 Aligned_cols=23 Identities=9% Similarity=-0.210 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988753
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0019 Score=42.02 Aligned_cols=23 Identities=4% Similarity=-0.354 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 36999999999999999887643
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0025 Score=46.79 Aligned_cols=108 Identities=12% Similarity=0.078 Sum_probs=58.6
Q ss_pred eEEEEEecCCCChHHHHHHhhc------CCCc-----c-ccCC-----------CceeeEE------E-----EeCCEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM------GEVV-----S-TIPT-----------IGFNVET------V-----QYNNIKF 63 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~------~~~~-----~-~~~t-----------~~~~~~~------~-----~~~~~~~ 63 (182)
-.|+++|++|+||||++..|.. +... + +.++ .++.... + ...+..+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~dl 185 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDH 185 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSSE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCCE
Confidence 3799999999999999998863 1100 0 0000 0100000 0 0145689
Q ss_pred EEEECCCCCCChh--h--hhhhCC--CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 64 QVWDLGGQTSIRP--Y--WRCYFP--NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 64 ~i~d~~g~~~~~~--~--~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.++||+|...... + ....+. ..+..++|+|.+.. ...+..+...+. ..+ ..-++.||.|...
T Consensus 186 vIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~----~l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 186 VFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS----SVP-VNQYIFTKIDETT 253 (296)
T ss_dssp EEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS----SSC-CCEEEEECTTTCS
T ss_pred EEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh----cCC-CCEEEEeCCCccc
Confidence 9999999765432 1 112233 36778899987642 233333322221 112 2346669999764
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0027 Score=43.77 Aligned_cols=23 Identities=9% Similarity=-0.230 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|+++|++|+|||++...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999754
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0021 Score=50.36 Aligned_cols=21 Identities=5% Similarity=-0.203 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999998886
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0023 Score=48.15 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||+|++.+.+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0025 Score=51.19 Aligned_cols=22 Identities=5% Similarity=-0.325 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0039 Score=44.94 Aligned_cols=25 Identities=8% Similarity=-0.164 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
....+++.|++|+|||++++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998753
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0025 Score=51.41 Aligned_cols=22 Identities=9% Similarity=-0.330 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7999999999999999988753
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0026 Score=46.92 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|++||||||++..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 3689999999999999998875
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0026 Score=46.44 Aligned_cols=22 Identities=14% Similarity=-0.121 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998874
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0027 Score=50.49 Aligned_cols=23 Identities=9% Similarity=-0.201 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999988743
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0024 Score=47.75 Aligned_cols=20 Identities=10% Similarity=-0.097 Sum_probs=18.9
Q ss_pred EEEEecCCCChHHHHHHhhc
Q 030122 20 GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~ 39 (182)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0041 Score=44.02 Aligned_cols=23 Identities=9% Similarity=-0.416 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|++-|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.003 Score=47.20 Aligned_cols=22 Identities=9% Similarity=-0.232 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-|++.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4699999999999999998875
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0021 Score=51.59 Aligned_cols=22 Identities=5% Similarity=-0.310 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7899999999999999977753
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0028 Score=47.83 Aligned_cols=22 Identities=9% Similarity=-0.179 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0027 Score=49.01 Aligned_cols=21 Identities=5% Similarity=-0.195 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|++.||||+|||+|++.+.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999974
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0027 Score=47.12 Aligned_cols=23 Identities=9% Similarity=-0.182 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.|++.|++|+|||+|++.+.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 36999999999999999998853
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0032 Score=48.25 Aligned_cols=20 Identities=15% Similarity=-0.150 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
-++++|++|+|||||+.+++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 58999999999999999876
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0029 Score=48.94 Aligned_cols=21 Identities=5% Similarity=-0.165 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.||||+|||.|++.+.+
T Consensus 217 GvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHH
Confidence 699999999999999999975
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0029 Score=47.16 Aligned_cols=22 Identities=9% Similarity=-0.132 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998754
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0048 Score=45.50 Aligned_cols=22 Identities=14% Similarity=-0.117 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-|+++||+|||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4688999999999999999974
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0028 Score=50.98 Aligned_cols=22 Identities=9% Similarity=-0.212 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988753
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0033 Score=47.53 Aligned_cols=19 Identities=5% Similarity=-0.157 Sum_probs=17.5
Q ss_pred EEEEecCCCChHHHHHHhh
Q 030122 20 GFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~ 38 (182)
.+++|+.|||||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999987
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0033 Score=50.73 Aligned_cols=23 Identities=9% Similarity=-0.139 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 69999999999999999988743
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0031 Score=48.77 Aligned_cols=21 Identities=5% Similarity=-0.172 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|++.||||+|||+|++.+.+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 699999999999999999974
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0037 Score=49.76 Aligned_cols=23 Identities=13% Similarity=-0.190 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0051 Score=45.92 Aligned_cols=23 Identities=13% Similarity=-0.172 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999864
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0034 Score=43.59 Aligned_cols=22 Identities=9% Similarity=-0.254 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0033 Score=46.59 Aligned_cols=22 Identities=5% Similarity=-0.192 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++|+|||++++.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999875
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0038 Score=49.68 Aligned_cols=23 Identities=9% Similarity=-0.234 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998743
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0039 Score=50.37 Aligned_cols=23 Identities=9% Similarity=-0.227 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999988743
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0054 Score=42.79 Aligned_cols=23 Identities=13% Similarity=-0.064 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
..-|+|-|++||||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0039 Score=49.46 Aligned_cols=19 Identities=5% Similarity=-0.178 Sum_probs=0.0
Q ss_pred EEEEecCCCChHHHHHHhh
Q 030122 20 GFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~ 38 (182)
++++|++|||||||++.++
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.005 Score=43.69 Aligned_cols=24 Identities=4% Similarity=-0.144 Sum_probs=20.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+..-|++.|++||||||+++.|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0031 Score=47.44 Aligned_cols=22 Identities=5% Similarity=-0.034 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.+++.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0033 Score=44.31 Aligned_cols=23 Identities=13% Similarity=-0.175 Sum_probs=17.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
..-|+|-|++||||||+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.004 Score=46.78 Aligned_cols=21 Identities=5% Similarity=-0.238 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||++++.+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0044 Score=50.05 Aligned_cols=23 Identities=13% Similarity=-0.190 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0016 Score=46.73 Aligned_cols=21 Identities=5% Similarity=-0.295 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999999875
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0055 Score=45.32 Aligned_cols=23 Identities=13% Similarity=-0.162 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-|++.||+|||||+|...+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35889999999999999999753
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0038 Score=47.74 Aligned_cols=21 Identities=5% Similarity=-0.210 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.||||+|||.|++.+.+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHH
Confidence 599999999999999999975
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.004 Score=46.39 Aligned_cols=22 Identities=9% Similarity=-0.127 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988754
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0028 Score=46.40 Aligned_cols=23 Identities=9% Similarity=-0.115 Sum_probs=17.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...|++-|+.||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998864
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0065 Score=42.73 Aligned_cols=23 Identities=9% Similarity=-0.097 Sum_probs=19.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~ 38 (182)
.+++|++.|++|+||||++-.+.
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHH
Confidence 36899999999999999966655
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0044 Score=46.02 Aligned_cols=22 Identities=5% Similarity=-0.150 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999998753
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0043 Score=46.00 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-++|.|++|+|||||++++...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5899999999999999998754
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0043 Score=46.71 Aligned_cols=22 Identities=5% Similarity=-0.189 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|++.|++|+|||++++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5999999999999999998753
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0029 Score=50.49 Aligned_cols=22 Identities=14% Similarity=-0.038 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|++|||||||++.|.+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 4699999999999999999874
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.004 Score=49.60 Aligned_cols=22 Identities=5% Similarity=-0.150 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|++|+|||||++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999988753
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0052 Score=46.28 Aligned_cols=21 Identities=10% Similarity=-0.164 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-+.+.|++|+|||||+.++..
T Consensus 63 i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999874
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0046 Score=48.33 Aligned_cols=23 Identities=9% Similarity=-0.127 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.++++|+||+|||++++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988753
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0049 Score=46.47 Aligned_cols=22 Identities=5% Similarity=-0.071 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+|||++++.+...
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0064 Score=48.20 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=20.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~ 38 (182)
...-|+++|.+||||||+.++|.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 182 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 8e-28 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 8e-27 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 7e-23 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 9e-23 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-22 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-22 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 3e-18 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 8e-18 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 6e-17 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 1e-15 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 7e-15 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 8e-15 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 1e-13 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 2e-13 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 3e-13 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 2e-12 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 6e-12 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 2e-11 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 3e-10 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 4e-09 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 5e-09 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 1e-08 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 2e-08 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 6e-07 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 5e-06 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 7e-06 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 9e-06 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 4e-05 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 6e-05 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 1e-04 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 3e-04 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 5e-04 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 0.004 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 100 bits (249), Expect = 8e-28
Identities = 74/153 (48%), Positives = 106/153 (69%)
Query: 26 DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85
D G +L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ IRP WR Y+ T
Sbjct: 21 DAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGT 80
Query: 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL 145
+ +I+VVD +D DRI A++E H I+ + E++ A+ LIFANKQDLP A+ + E L L
Sbjct: 81 QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 140
Query: 146 HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
+I++R W + +CA G+GL+EG+ WL++ K
Sbjct: 141 TRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 98.1 bits (243), Expect = 8e-27
Identities = 91/154 (59%), Positives = 116/154 (75%)
Query: 26 DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85
D G RLQ+GEVV+T PTIGFNVET+ Y N+K VWDLGGQTSIRPYWRCY+ +T
Sbjct: 26 DGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADT 85
Query: 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL 145
AVI+VVDS+D DR+ TA +E H +L+EEEL+ A L+FANKQD PGAL + VS+ L L
Sbjct: 86 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNL 145
Query: 146 HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++K+R W+I + AIKGEG+ EG+DWL + +K
Sbjct: 146 VELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 87.8 bits (216), Expect = 7e-23
Identities = 72/153 (47%), Positives = 98/153 (64%)
Query: 26 DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85
DN G + M EVV T PTIG NVE + NN +F +WD+GGQ S+R W Y+ NT
Sbjct: 24 DNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNT 83
Query: 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL 145
E VI VVDS+D +RI +EE + +L E+L+ A LIFANKQD+ + A +S+ L+L
Sbjct: 84 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL 143
Query: 146 HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
IK+ QW I CA+ GEGL +G++W+ + LK
Sbjct: 144 TSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 87.7 bits (216), Expect = 9e-23
Identities = 66/152 (43%), Positives = 92/152 (60%)
Query: 26 DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85
DN G +L ++ PT GFN+++VQ K VWD+GGQ IRPYWR YF NT
Sbjct: 25 DNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT 84
Query: 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL 145
+ +IYV+DS+D R + +E +LEEE+L LIFANKQDL A + ++E L L
Sbjct: 85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL 144
Query: 146 HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
H I++R W I A+ GEG+ +GM+W+ +
Sbjct: 145 HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 85.9 bits (211), Expect = 3e-22
Identities = 84/152 (55%), Positives = 113/152 (74%)
Query: 26 DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85
D G +L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR YF NT
Sbjct: 9 DAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 68
Query: 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL 145
+ +I+VVDS+D +R+ A+EE +L E+EL+ AV L+FANKQDLP A++ A +++ L L
Sbjct: 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 128
Query: 146 HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
H +++R W I TCA G+GL+EG+DWLSN L
Sbjct: 129 HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 85.9 bits (211), Expect = 4e-22
Identities = 70/154 (45%), Positives = 98/154 (63%)
Query: 26 DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85
DN G + +V + PT+GFN++T+++ K +WD+GGQ S+R YWR YF +T
Sbjct: 11 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 70
Query: 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL 145
+ +I+VVDS+D R+Q + E ++L EE L GA LIFANKQDLPGAL A+ EALEL
Sbjct: 71 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL 130
Query: 146 HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
I++ W I A+ GE L G+DWL + + S
Sbjct: 131 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.5 bits (184), Expect = 3e-18
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 7/156 (4%)
Query: 26 DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85
DN G L+ + + PT E + NIKF +DLGG R W+ YFP
Sbjct: 9 DNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEV 68
Query: 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL 145
++++VD++D +R A+ E A+ ELK +I NK D P A+ +A + AL L
Sbjct: 69 NGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGL 128
Query: 146 HKI-------KNRQWAIFKTCAIKGEGLFEGMDWLS 174
R +F + G E WLS
Sbjct: 129 LNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.6 bits (185), Expect = 8e-18
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
++++ VV T G Q + + F ++D+GGQ R W F + A+I+VV SS
Sbjct: 25 QMRILHVV---LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 81
Query: 96 ----------DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
T+R+Q A F +I L+ ++F NKQDL
Sbjct: 82 SYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 72.4 bits (176), Expect = 6e-17
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 26 DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85
DN G L+ + +PT+ E + + F +DLGG R W+ Y P
Sbjct: 22 DNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAI 81
Query: 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL 145
++++VD +D +R+ +KEE +++ +E + LI NK D P A+ + + E L
Sbjct: 82 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 141
Query: 146 H------------KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
+ ++ R +F +K +G EG W++ +
Sbjct: 142 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 68.6 bits (166), Expect = 1e-15
Identities = 45/154 (29%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Query: 26 DNFGNLCDTDRLQMGEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
G + + G+ + PT+GFN+ + N+ ++WD+GGQ R W Y
Sbjct: 11 QYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRG 70
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144
A++Y+VD++D ++I+ +K E H +L++ +L+G L+ NK+DLPGALD+ + E +
Sbjct: 71 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMN 130
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
L I++R+ + + + + + WL K
Sbjct: 131 LSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.3 bits (163), Expect = 7e-15
Identities = 32/175 (18%), Positives = 68/175 (38%), Gaps = 34/175 (19%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
++++ S +PT G ++ F++ D+GGQ S R W F N +++++V S
Sbjct: 21 QMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 79
Query: 96 DTDR----------IQTAKEEFHAILEEEELKGAVALIFANKQDL--------------- 130
+ D+ ++ +K F I+ + + ++F NK+DL
Sbjct: 80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFP 139
Query: 131 -----PGALDDAA---VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
A + ++L+ ++ TCA E + + +T+
Sbjct: 140 EYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 194
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 66.7 bits (161), Expect = 8e-15
Identities = 95/154 (61%), Positives = 116/154 (75%)
Query: 26 DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85
D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGG TSIRPYWRCY+ NT
Sbjct: 14 DGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNT 73
Query: 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL 145
+AVIYVVDS D DRI +K E A+LEEEEL+ A+ ++FANKQD+ A+ + ++ +L L
Sbjct: 74 DAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGL 133
Query: 146 HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
+K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 134 PALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.9 bits (154), Expect = 1e-13
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 7/136 (5%)
Query: 35 DRLQMGEVVSTIPTIGFNVETVQYNN---IKFQVWDLGGQTSIRPYWRC-YFPNTEAVIY 90
RL G+ T +I + + NN + DL G S+R + + AV++
Sbjct: 18 VRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 77
Query: 91 VVDSSDTDR-IQTAKEEFHAILEEEELKGAVA--LIFANKQDLPGALDDAAVSEALELHK 147
VVDS+ R ++ E + +L + LI NKQD+ A + + LE
Sbjct: 78 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKEL 137
Query: 148 IKNRQWAIFKTCAIKG 163
R +
Sbjct: 138 NTLRVTRSAAPSTLDS 153
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.9 bits (152), Expect = 2e-13
Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 9/151 (5%)
Query: 34 TDRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88
R ST I TIG F + T++ + IK Q+WD GQ R Y+ +
Sbjct: 23 LFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 82
Query: 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI 148
+ V D ++ + I E ++ E
Sbjct: 83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE----KLA 138
Query: 149 KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
+ +T A + L+ +K+
Sbjct: 139 LDYGIKFMETSAKANINVENAFFTLARDIKA 169
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.1 bits (150), Expect = 3e-13
Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 10/158 (6%)
Query: 26 DNFGNLCDTDRLQMGEVVST-IPTIGFNVET----VQYNNIKFQVWDLGGQTSIRPYWRC 80
G C R + + I TIG + + + +K Q+WD GQ R
Sbjct: 11 SGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTA 70
Query: 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS 140
Y+ +I V D +D K+ F + E + + L+ + V+
Sbjct: 71 YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-----ETRVVT 125
Query: 141 EALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
K ++ A + + E L+ ++
Sbjct: 126 ADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 163
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.7 bits (146), Expect = 2e-12
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 37 LQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD 96
QM + PT G + + N+ F++ D+GGQ S R W F + +++++V SS+
Sbjct: 20 KQMRIIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE 79
Query: 97 TD----------RIQTAKEEFHAILEEEELKGAVALIFANKQD 129
D R+ + F I+ ++F NK D
Sbjct: 80 FDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 122
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (142), Expect = 6e-12
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 4/123 (3%)
Query: 55 TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEE 114
+V N K +WD GQ R Y+ + VI V D + D + +
Sbjct: 50 SVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC 109
Query: 115 ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174
V ++ NK D + V L + + A +G+ + L
Sbjct: 110 TRNDIVNMLVGNKIDKE----NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV 165
Query: 175 NTL 177
+
Sbjct: 166 EKI 168
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (138), Expect = 2e-11
Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 4/123 (3%)
Query: 56 VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE 115
V +K Q+WD GQ R Y+ + A++ + D ++ + I E +
Sbjct: 51 VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 110
Query: 116 LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175
A+ L+ + V K +T A G + ++
Sbjct: 111 HDVALMLLGNKVDS----AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 166
Query: 176 TLK 178
LK
Sbjct: 167 ELK 169
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (130), Expect = 3e-10
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 8/139 (5%)
Query: 44 STIPTIGFNVET----VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
I TIG + + + +K Q+WD GQ R Y+ + +I V D +D +
Sbjct: 34 DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 93
Query: 100 IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159
K I + L+ NK DL D V + + +T
Sbjct: 94 FNGVKMWLQEIDRYAT-STVLKLLVGNKCDLK---DKRVVEYDVAKEFADANKMPFLETS 149
Query: 160 AIKGEGLFEGMDWLSNTLK 178
A+ + + ++ +K
Sbjct: 150 ALDSTNVEDAFLTMARQIK 168
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 4e-09
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 3/134 (2%)
Query: 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
G N + + + Q+WD GQ R +F + + + D + +
Sbjct: 48 VYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR 107
Query: 105 EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164
+ + ++ NK DLP + +A EL F+T A G+
Sbjct: 108 NWMSQLQANAYCENPDIVLIGNKADLPDQREVNER-QARELADKYG--IPYFETSAATGQ 164
Query: 165 GLFEGMDWLSNTLK 178
+ + ++ L + +
Sbjct: 165 NVEKAVETLLDLIM 178
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.6 bits (120), Expect = 5e-09
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 4/123 (3%)
Query: 56 VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE 115
IK Q+WD GQ R Y+ I + D ++ + ++ I
Sbjct: 49 RNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW 108
Query: 116 LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175
V L+ + + + + F+ A + + + L +
Sbjct: 109 DNAQVLLVGNKCDMEDERVVSSERGR----QLADHLGFEFFEASAKDNINVKQTFERLVD 164
Query: 176 TLK 178
+
Sbjct: 165 VIC 167
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (118), Expect = 1e-08
Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 4/131 (3%)
Query: 49 IGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFH 108
G + V +K Q+WD GQ R R Y+ + V D + +
Sbjct: 42 FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLT 101
Query: 109 AILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168
+ L K + + + +T A+ GE + E
Sbjct: 102 DARMLASQNIVIILCGNKKDLDADREVTFLEASRF----AQENELMFLETSALTGENVEE 157
Query: 169 GMDWLSNTLKS 179
+ + +
Sbjct: 158 AFVQCARKILN 168
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.0 bits (118), Expect = 2e-08
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 33/166 (19%)
Query: 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
G + ++ F+++D+GGQ S R W F A+I+ V SD D +
Sbjct: 26 HEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 85
Query: 105 ----------EEFHAILEEEELKGAVALIFANKQ-----------------DLPGALDDA 137
+ F +I + ++F NK+ + G+
Sbjct: 86 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYE 145
Query: 138 AVSEALELH------KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
+ ++ + ++ TCA + + D +++ +
Sbjct: 146 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 191
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (105), Expect = 6e-07
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 1/122 (0%)
Query: 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL 116
+ +KF++WD GQ Y+ N +A + V D + A+ + E+
Sbjct: 48 NEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS- 106
Query: 117 KGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176
K + + NK D+ + V+ + + F+T A GE + + +
Sbjct: 107 KDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK 166
Query: 177 LK 178
+
Sbjct: 167 IP 168
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 5e-06
Identities = 26/128 (20%), Positives = 39/128 (30%), Gaps = 4/128 (3%)
Query: 50 GFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHA 109
G + V IK Q+WD GQ R R Y+ + V D +
Sbjct: 42 GTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD 101
Query: 110 ILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169
+ LI NK DL D EA + + + A GE + +
Sbjct: 102 ARNLTNPNTVIILI-GNKADLEAQ-RDVTYEEAKQFAEENG--LLFLEASAKTGENVEDA 157
Query: 170 MDWLSNTL 177
+ +
Sbjct: 158 FLEAAKKI 165
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 7e-06
Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 4/119 (3%)
Query: 55 TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEE 114
V IK Q+WD GQ R Y+ + V D + + + + +
Sbjct: 47 QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 106
Query: 115 ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
+ V ++ NK DL AV + + +T A+ + E +
Sbjct: 107 D-SNIVIMLVGNKSDLR---HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 161
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (97), Expect = 9e-06
Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 6/139 (4%)
Query: 41 EVVSTIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98
+ F ++TV+ N +K Q+WD GQ R + Y+ + A+I D + +
Sbjct: 32 PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE 91
Query: 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158
+ E I + K L+ +E + + +T
Sbjct: 92 SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAE----EFSEAQDMYYLET 147
Query: 159 CAIKGEGLFEGMDWLSNTL 177
A + + + + L+ L
Sbjct: 148 SAKESDNVEKLFLDLACRL 166
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 4e-05
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 3/133 (2%)
Query: 41 EVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRI 100
+ TI V + ++ D G Y N + I V +
Sbjct: 31 KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSF 90
Query: 101 QTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160
Q K I+ + + ++ NK DL + + SE L + + +T A
Sbjct: 91 QDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE-REVSSSEGRALAEEWGCPF--METSA 147
Query: 161 IKGEGLFEGMDWL 173
+ E +
Sbjct: 148 KSKTMVDELFAEI 160
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 6e-05
Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 4/145 (2%)
Query: 34 TDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
R Q ++ G + + IK Q+WD GQ S R R Y+ + V D
Sbjct: 25 DKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 84
Query: 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ + + V ++ NK DL V +
Sbjct: 85 ITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLE---SRRDVKREEGEAFAREHGL 140
Query: 154 AIFKTCAIKGEGLFEGMDWLSNTLK 178
+T A + E + +
Sbjct: 141 IFMETSAKTACNVEEAFINTAKEIY 165
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 1e-04
Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 4/123 (3%)
Query: 56 VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE 115
+ +KF++WD GQ Y+ +A I V D ++ + AK + +
Sbjct: 50 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109
Query: 116 LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175
+AL + AV + +T A + E ++
Sbjct: 110 PNIVIALSGNKADLA----NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
Query: 176 TLK 178
L
Sbjct: 166 KLP 168
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 3e-04
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 6/132 (4%)
Query: 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI---YVVDSSDTDRIQ 101
V + + Q+WD GQ R ++ ++ + V DS +
Sbjct: 39 IGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS 98
Query: 102 TAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161
K+EF + +E + +I NK D+ + +E + N + F+T A
Sbjct: 99 NWKKEFIYYADVKEPESFPFVILGNKIDIS---ERQVSTEEAQAWCRDNGDYPYFETSAK 155
Query: 162 KGEGLFEGMDWL 173
+ +
Sbjct: 156 DATNVAAAFEEA 167
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 36.8 bits (84), Expect = 5e-04
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 3/123 (2%)
Query: 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL 116
++ + D GQ YF + E + V ++ + + IL +E
Sbjct: 48 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 107
Query: 117 KGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176
+ L+ NK DL D VS ++ +T A + + L
Sbjct: 108 ENVPFLLVGNKSDLE---DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMRE 164
Query: 177 LKS 179
+++
Sbjct: 165 IRA 167
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.1 bits (77), Expect = 0.004
Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 4/119 (3%)
Query: 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG 118
+ +WD GQ Y+ ++ I V D +D D Q K + + +
Sbjct: 50 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 109
Query: 119 AVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
+ ++ +E+ ++ + T A + +G+ E L +
Sbjct: 110 CLCIVGNKIDLEKERHVSIQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 182 | |||
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 100.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 100.0 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.97 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.97 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.96 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.96 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.96 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.94 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.94 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.92 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.92 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.92 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.92 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.91 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.91 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.9 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.9 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.88 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.88 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.87 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.85 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.84 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.83 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.81 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.81 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.81 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.8 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.79 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.76 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.75 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.73 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.72 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.69 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.56 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.52 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.51 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.44 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.44 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.36 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.08 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.07 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.05 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.98 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.91 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.71 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.3 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.27 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.2 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.15 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.07 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.06 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.04 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.02 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.98 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.97 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.96 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.91 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.91 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.91 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.89 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.88 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.86 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.85 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.84 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.84 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.82 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.81 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.8 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.78 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.76 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.69 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.68 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.67 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.65 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.64 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.64 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.54 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.51 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.49 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.48 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.48 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.45 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.45 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.45 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.44 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.43 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.42 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.41 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.4 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.38 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.36 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.36 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.34 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.34 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.31 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.29 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.28 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.27 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.25 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.24 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.24 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.23 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.22 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.21 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.2 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.18 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.17 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.15 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.14 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.12 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.11 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.1 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.08 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.07 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.06 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.04 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.04 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 97.01 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.0 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.99 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.99 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.99 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.96 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.95 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.95 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 96.94 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.92 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.87 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.87 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.86 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.84 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.77 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.77 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.73 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.69 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.66 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.62 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.6 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.6 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.58 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.57 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.57 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.54 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.51 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.5 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.5 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.48 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.45 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.41 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.35 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.35 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.35 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.32 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.22 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.21 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.19 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.12 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.12 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.08 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.07 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 96.04 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.03 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.98 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.89 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.87 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.82 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.81 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.8 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.77 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.75 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.74 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.71 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.7 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.58 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.52 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.5 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.41 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.41 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.39 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.38 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.38 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.37 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.36 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.34 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.32 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.24 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.19 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.09 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.09 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 95.01 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.98 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.87 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.86 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.84 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.84 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.79 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.6 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.03 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.02 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.87 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.46 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 93.37 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 93.35 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 93.05 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 92.67 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 91.54 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 91.21 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 91.05 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.02 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 90.86 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.81 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 90.57 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 90.32 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.23 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 90.16 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 89.83 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 89.6 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 87.84 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 87.29 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 86.85 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 85.8 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 84.94 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 84.83 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 83.28 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 82.87 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 81.78 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 80.2 |
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=7.6e-38 Score=212.10 Aligned_cols=165 Identities=42% Similarity=0.767 Sum_probs=151.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
+.+||+++|++|||||||+++|.+..+....||.++....+..+++.+.+||++|++.++..+..++..++++++|||++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 80 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 80 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence 35899999999999999999999988877999999988889999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
+..++.....++...+......++|+++|+||+|+.+....++....+.....+.+.+.+++|||++|+|++++|+||++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 160 (165)
T d1ksha_ 81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160 (165)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999988888877766788999999999999988888888887777777778899999999999999999999999
Q ss_pred HHhcC
Q 030122 176 TLKSG 180 (182)
Q Consensus 176 ~i~~~ 180 (182)
.+.++
T Consensus 161 ~i~~r 165 (165)
T d1ksha_ 161 DISSR 165 (165)
T ss_dssp HHHTC
T ss_pred HHHcC
Confidence 88754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=3.5e-38 Score=213.66 Aligned_cols=161 Identities=28% Similarity=0.587 Sum_probs=150.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
++||+++|++|||||||+++|.++.+.+ +.||+++....+....+.+.+||+||++.+...|..++..++++++|||++
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 81 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccc
Confidence 6899999999999999999999999877 889999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
+.++|.....|+..+.......++|+++|+||+|+.+.....++.+.++...++...++++++||++|+|++++|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~ 161 (164)
T d1zd9a1 82 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 161 (164)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHH
Confidence 99999999999999988877789999999999999988788888888888888888899999999999999999999987
Q ss_pred HH
Q 030122 176 TL 177 (182)
Q Consensus 176 ~i 177 (182)
.+
T Consensus 162 ~~ 163 (164)
T d1zd9a1 162 HS 163 (164)
T ss_dssp TC
T ss_pred cc
Confidence 54
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=4.9e-38 Score=215.10 Aligned_cols=167 Identities=41% Similarity=0.742 Sum_probs=152.7
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..++.+++||+++|++|||||||+++|.++.+....++.++....+.+.++.+.+||++|++.++..+..++..+|++++
T Consensus 10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 89 (176)
T d1fzqa_ 10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (176)
T ss_dssp SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEE
Confidence 35566789999999999999999999999999888888899889999999999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|||+++..++..+..|+..+.......++|+++++||+|+.+......+.+.+.....+.+.+.+++|||++|+|++++|
T Consensus 90 v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~ 169 (176)
T d1fzqa_ 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169 (176)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred eeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999888877777889999999999999888888888888777777888999999999999999999
Q ss_pred HHHHHHH
Q 030122 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~i 177 (182)
+||++.+
T Consensus 170 ~~l~~~i 176 (176)
T d1fzqa_ 170 NWVCKNV 176 (176)
T ss_dssp HHHHHTC
T ss_pred HHHHhcC
Confidence 9998753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=5.7e-38 Score=215.95 Aligned_cols=168 Identities=54% Similarity=0.926 Sum_probs=151.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
...+.+||+++|++|||||||++++.++.+....||.+........+++.+.+||++|++.++.++..++..++++++|+
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV 92 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEe
Confidence 45567999999999999999999999888877889999888888889999999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++.++.....|+..++......+.|+++++||+|+.+....+++.+.+.+..+....+.+++|||++|+|++++|+|
T Consensus 93 d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~ 172 (182)
T d1moza_ 93 DSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDW 172 (182)
T ss_dssp ETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHH
T ss_pred eecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999988887777788999999999999988888899998888888888899999999999999999999
Q ss_pred HHHHHhcC
Q 030122 173 LSNTLKSG 180 (182)
Q Consensus 173 l~~~i~~~ 180 (182)
|++.+.++
T Consensus 173 l~~~i~~~ 180 (182)
T d1moza_ 173 LIDVIKEE 180 (182)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=4e-37 Score=210.09 Aligned_cols=163 Identities=45% Similarity=0.887 Sum_probs=150.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
.+.+||+++|++|||||||++++.++.+....+|.++.........+.+.+||+||++.++..+..+++.++++++|+|+
T Consensus 10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~ 89 (173)
T d1e0sa_ 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC 89 (173)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEET
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEec
Confidence 34689999999999999999999999887788888988888888999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
++.+++..+..|+...++.....+.|+++++||+|+.+.....++...+++..+....+.+++|||++|+|++++|+||.
T Consensus 90 s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~ 169 (173)
T d1e0sa_ 90 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 169 (173)
T ss_dssp TCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHH
Confidence 99999999999999888877678899999999999998888888988888888888889999999999999999999998
Q ss_pred HHH
Q 030122 175 NTL 177 (182)
Q Consensus 175 ~~i 177 (182)
+.+
T Consensus 170 ~~~ 172 (173)
T d1e0sa_ 170 SNY 172 (173)
T ss_dssp HHC
T ss_pred Hhc
Confidence 865
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-37 Score=208.54 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=130.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
++||+++|++|||||||+++|+++.+.. +.||++.+.....+ ..+.+.+||++|++.+..++..++++++++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 5799999999999999999999999887 88999876655554 568999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
||+++++||+.+..|+..+.... .++|+++|+||+|+......++ .....+..++++++|||++|.|++++|.
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~-----~~~~~~~~~~~~~e~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFEKPFL 155 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTT-----SHHHHSSCSSEEEEEBTTTTBTTTHHHH
T ss_pred cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhH-----HHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999887654 6899999999999976543222 1122345567899999999999999999
Q ss_pred HHHHHHhcCC
Q 030122 172 WLSNTLKSGG 181 (182)
Q Consensus 172 ~l~~~i~~~~ 181 (182)
+|++.+....
T Consensus 156 ~l~~~l~~~~ 165 (170)
T d1i2ma_ 156 WLARKLIGDP 165 (170)
T ss_dssp HHHHHHHTCT
T ss_pred HHHHHHccCC
Confidence 9999887653
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.5e-37 Score=209.06 Aligned_cols=164 Identities=17% Similarity=0.160 Sum_probs=135.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
|+...+||+++|++|||||||+++|+++.+.. +.+|.. .....+.+ ..+.+.+||++|++++..++..+++++|++
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 81 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 81 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence 55677999999999999999999999999887 666655 33445555 457889999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++|||++++.+|+.+..|+..+.+.....+.|+++|+||+|+..... .++. ..+ ++..++++++|||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~e~Sak~g~gv 156 (173)
T d2fn4a1 82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEA-SAF----GASHHVAYFEASAKLRLNV 156 (173)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBSH
T ss_pred eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhh-hHH----HHhcCCEEEEEeCCCCcCH
Confidence 99999999999999999999987765567899999999999875432 2222 121 1234567999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 030122 167 FEGMDWLSNTLKSGG 181 (182)
Q Consensus 167 ~~~~~~l~~~i~~~~ 181 (182)
+++|.++++.+.+.+
T Consensus 157 ~e~f~~l~~~i~k~~ 171 (173)
T d2fn4a1 157 DEAFEQLVRAVRKYQ 171 (173)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887643
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-37 Score=208.47 Aligned_cols=158 Identities=12% Similarity=0.020 Sum_probs=115.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
+||+++|++|||||||+++|.+..+....++.+ .....+.+ ..+.+.+||++|+++++.++..+++++|++|+|||+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 81 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV 81 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence 699999999999999999999888766656655 33344555 558899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
+++.+|+.+..|+..+.......++|+++|+||+|+.+... ..+.. .+ .+..++++++|||++|.|++++|.+
T Consensus 82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~~~~v~~~f~~ 156 (168)
T d2gjsa1 82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR-AC----AVVFDCKFIETSAALHHNVQALFEG 156 (168)
T ss_dssp TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHH-HH----HHhcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999987766567889999999999976433 22221 11 1233457999999999999999999
Q ss_pred HHHHHhcC
Q 030122 173 LSNTLKSG 180 (182)
Q Consensus 173 l~~~i~~~ 180 (182)
+++.+..+
T Consensus 157 l~~~i~~~ 164 (168)
T d2gjsa1 157 VVRQIRLR 164 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-35 Score=201.65 Aligned_cols=159 Identities=15% Similarity=0.111 Sum_probs=132.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+++||+++|++|||||||++++..+.+.+ +.||.+.... .+.. ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 81 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence 56899999999999999999999999988 7888874333 2333 678999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.||+.+..|+..+.+.....++|+++|+||+|+..... .++.. .+.. ....+++++|||++|.|++++
T Consensus 82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~-~~~~---~~~~~~~~e~Sak~g~gv~e~ 157 (167)
T d1c1ya_ 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ-NLAR---QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHH-HHHH---HTTSCEEEECBTTTTBSHHHH
T ss_pred eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHH-HHHH---HhCCCEEEEEcCCCCcCHHHH
Confidence 99999999999999999987765557899999999999975432 22222 1111 123567999999999999999
Q ss_pred HHHHHHHHh
Q 030122 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~i~ 178 (182)
|.++++.+.
T Consensus 158 F~~l~~~i~ 166 (167)
T d1c1ya_ 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999875
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-36 Score=205.90 Aligned_cols=156 Identities=17% Similarity=0.238 Sum_probs=130.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|||||||+++|.++.+.. +.||++.......+ ..+.+.+||++|++++..++..++++++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 4899999999999999999999988877 88998855554444 457899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++++|+.+..|+..+.... .++|+++|+||+|+.+... .++. +.+ ++..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~Sak~g~~v~e~ 154 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEA-EGL----AKRLKLRFYRTSVKEDLNVSEV 154 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHH-HHH----HHHHTCEEEECBTTTTBSSHHH
T ss_pred EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhh-HHH----HHHcCCEEEEeccCCCcCHHHH
Confidence 99999999999999999887654 6899999999999875432 2222 222 1233467999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|++|++.+.+
T Consensus 155 f~~l~~~~lq 164 (164)
T d1z2aa1 155 FKYLAEKHLQ 164 (164)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=8.5e-36 Score=202.74 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=129.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|||||||+++|.++.+.+ +.++.+..... +.. ..+.+.+|||||++++..++..+++++|++|+|
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv 84 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 84 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 5799999999999999999999998877 77777754443 333 457899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||+++++++..+..|+..+... ...+.|+++++||+|+..... .++.. .+ .+..++++++|||++|.|++++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~g~gv~e~ 158 (169)
T d3raba_ 85 YDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGR-QL----ADHLGFEFFEASAKDNINVKQT 158 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECBTTTTBSHHHH
T ss_pred EECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhH-HH----HHHcCCEEEEecCCCCcCHHHH
Confidence 9999999999999988776544 346899999999999876432 23322 21 1233457999999999999999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|+++++.+.++
T Consensus 159 f~~l~~~i~ek 169 (169)
T d3raba_ 159 FERLVDVICEK 169 (169)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhC
Confidence 99999998764
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-35 Score=201.62 Aligned_cols=166 Identities=16% Similarity=0.135 Sum_probs=129.3
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.|....+||+++|++|||||||+++|+++.+.+ +.||++... ..+.. ..+.+.+||++|++.+..++..+++++|+
T Consensus 4 ~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~ 83 (185)
T d2atxa1 4 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 83 (185)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence 355677899999999999999999999999877 888887333 33333 55889999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhh---------cccccCC-CceEEEE
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---------ELHKIKN-RQWAIFK 157 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~ 157 (182)
+++|||+++++||+.+..|+....+.. ..++|+++|+||+|+.+........... +...++. ..+.|++
T Consensus 84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E 162 (185)
T d2atxa1 84 FLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 162 (185)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred eeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEE
Confidence 999999999999998887776666543 3689999999999997632111110000 0001111 2356999
Q ss_pred ecccCCCCHHHHHHHHHHHHh
Q 030122 158 TCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
|||++|.|++++|+.++++++
T Consensus 163 ~SAk~~~gv~e~F~~li~~il 183 (185)
T d2atxa1 163 CSALTQKGLKTVFDEAIIAIL 183 (185)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHHc
Confidence 999999999999999999875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=4.7e-36 Score=203.82 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=129.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
-+||+++|++|||||||+++++++.+.+ +.||.+..+ ..+.+ ..+.+.+||++|++++..++..+++++|++++||
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 83 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF 83 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEe
Confidence 3699999999999999999999999877 888988443 33444 4578999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++.+|+.+..|+..+.+.....++|+++|+||+|+.+.. ..++.... ++..++++++|||++|.|++++|
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~g~gv~e~f 158 (168)
T d1u8za_ 84 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR-----ADQWNVNYVETSAKTRANVDKVF 158 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEECCTTTCTTHHHHH
T ss_pred eccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHH-----HHHcCCeEEEEcCCCCcCHHHHH
Confidence 999999999999999998876556789999999999986543 23333221 12234579999999999999999
Q ss_pred HHHHHHHhcC
Q 030122 171 DWLSNTLKSG 180 (182)
Q Consensus 171 ~~l~~~i~~~ 180 (182)
.+|++.+.++
T Consensus 159 ~~l~~~i~~r 168 (168)
T d1u8za_ 159 FDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHCc
Confidence 9999998764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.6e-35 Score=200.03 Aligned_cols=162 Identities=12% Similarity=0.169 Sum_probs=128.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+.||+++|++|||||||+++|.++.+.+ +.||.+... ..... ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 4799999999999999999999999887 888887332 23333 5678999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhc---------ccccC-CCceEEEEecccC
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE---------LHKIK-NRQWAIFKTCAIK 162 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~Sa~~ 162 (182)
|+++++||+.+..|+....... ..++|+++|+||+|+.+.....+...... ....+ ...++|++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred ccchhHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 9999999999988777766554 36899999999999976432211111111 11111 1235799999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030122 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~ 179 (182)
|.|++++|+.+++++++
T Consensus 161 ~~gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 161 KDGVREVFEMATRAALQ 177 (177)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 99999999999998864
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-35 Score=201.56 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=131.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+.+||+++|++|||||||+++|+++.+.+ +.||.+..+ ..+.+ ..+.+.+||++|.+.+..++..++..+|++++|
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 82 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEE
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhh
Confidence 45799999999999999999999998877 788988553 34445 457889999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++++|+.+..|+..+.......++|+++|+||+|+..... .++.. .+ .+..+++|++|||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~-~~----a~~~~~~~~e~Sak~~~~v~~~ 157 (167)
T d1xtqa1 83 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGK-AL----AESWNAAFLESSAKENQTAVDV 157 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECCTTCHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHH-HH----HHHcCCEEEEEecCCCCCHHHH
Confidence 99999999999999999988766567899999999999875432 33322 11 1233457999999999999999
Q ss_pred HHHHHHHHh
Q 030122 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~i~ 178 (182)
|..+++.+.
T Consensus 158 f~~li~~~~ 166 (167)
T d1xtqa1 158 FRRIILEAE 166 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-35 Score=200.67 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=124.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|||||||+++|.++.+.+ +.||.+........ ..+.+.+||++|++.++.++..+++++|++++|
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 82 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV 82 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence 5799999999999999999999999888 88888855544333 458999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||+++++||+.+..|+..+.... ..+.|+++++||+|+..... .++... .++..++++++|||++|.|++++
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~-----~a~~~~~~~~e~Sak~~~~v~e~ 156 (167)
T d1z08a1 83 YDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAES-----YAESVGAKHYHTSAKQNKGIEEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHH-----HHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHHH-----HHHHcCCeEEEEecCCCcCHHHH
Confidence 99999999999999998775443 36789999999999876432 333322 12334567999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|.+|++.+.+
T Consensus 157 F~~l~~~i~~ 166 (167)
T d1z08a1 157 FLDLCKRMIE 166 (167)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999998875
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-35 Score=201.53 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=129.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.++||+++|++|||||||+++++++.+.+ +.||.+ .....+.+ ..+.+.+||++|.+.+...+..++..+|++++|
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 83 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV 83 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence 35899999999999999999999998877 788877 44444444 457899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||+++++||+.+..|+..+.......+.|+++|+||+|+..... .++.... ++..+++|++|||++|.||+++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~~~~i~e~ 158 (171)
T d2erya1 84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL-----ARQLKVTYMEASAKIRMNVDQA 158 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHH-----HHHTTCEEEECBTTTTBSHHHH
T ss_pred eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHH-----HHHcCCEEEEEcCCCCcCHHHH
Confidence 99999999999999999887766667899999999999876532 2332221 2334567999999999999999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|.+|++.+.+.
T Consensus 159 f~~l~~~i~k~ 169 (171)
T d2erya1 159 FHELVRVIRKF 169 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998754
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-35 Score=202.31 Aligned_cols=159 Identities=15% Similarity=0.102 Sum_probs=131.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+||+++|++|||||||+++++++.+.+ +.||.+.. ...+.. ..+.+.+||++|++.+..++..+++++|++++||
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~ 83 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVY 83 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEec
Confidence 4899999999999999999999999877 77887733 233344 5688999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC-CHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE-GLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~ 169 (182)
|+++++||..+..|+..+.+.....++|+++++||+|+..... .++..+ + ++..+++|+++||+++. ||+++
T Consensus 84 d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~-~----~~~~~~~~~e~Sak~~~~nV~~~ 158 (169)
T d1x1ra1 84 SVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE-M----ATKYNIPYIETSAKDPPLNVDKT 158 (169)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH-H----HHHHTCCEEEEBCSSSCBSHHHH
T ss_pred ccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHH-H----HHHcCCEEEEEcCCCCCcCHHHH
Confidence 9999999999999999987776667899999999999976543 233221 1 12233569999999886 99999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|.+|++.+.++
T Consensus 159 F~~l~~~i~~~ 169 (169)
T d1x1ra1 159 FHDLVRVIRQQ 169 (169)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-36 Score=203.29 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=128.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE-EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
++||+++|++|||||||+++|+++.+.+ +.||++..... ... ..+.+.+||++|++.+...+..++..+|++++||
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~ 81 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 81 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence 5899999999999999999999999877 88999844333 333 4478899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|++++++|+.+..|+..+.+.. ...++|+++|+||+|+..... .++.. .+ ++..++++++|||++|.|++++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~-~~----~~~~~~~~~e~Sak~~~~v~e~ 156 (171)
T d2erxa1 82 SITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE-AL----ARTWKCAFMETSAKLNHNVKEL 156 (171)
T ss_dssp ETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHHTCEEEECBTTTTBSHHHH
T ss_pred ecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHH-HH----HHHcCCeEEEEcCCCCcCHHHH
Confidence 9999999999999998876543 346789999999999865432 22222 22 1233467999999999999999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|..|++.+.++
T Consensus 157 f~~l~~~~~~~ 167 (171)
T d2erxa1 157 FQELLNLEKRR 167 (171)
T ss_dssp HHHHHHTCCSS
T ss_pred HHHHHHHHHHh
Confidence 99999887655
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.8e-35 Score=197.37 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=132.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEE-Ee--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETV-QY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~-~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+++||+++|++|||||||+++|+++.+.+ +.++.+...... .. ..+.+.+||++|++.+...+..+++.++++++|
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence 46899999999999999999999999888 788888443332 22 568899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
||++++.+|+.+..|+..+.......++|+++|+||+|+.......+....+. +..++++++|||++|+||+++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gi~e~f~ 157 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHH
T ss_pred ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHH----HHhCCeEEEEcCCCCcCHHHHHH
Confidence 99999999999999999988766557899999999999865432222222221 22345699999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
++++++.+
T Consensus 158 ~i~~~i~~ 165 (166)
T d1ctqa_ 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.6e-35 Score=197.69 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=129.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||+++|.++++.+ +.++.+........ ..+.+.+||++|++.+...+..++..++++++||
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 589999999999999999999999887 78888865554443 4588999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++.+|+.+..|+..+.... ..++|+++|+||+|+.+... .++... + .+..++++++|||++|.|++++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~SAk~g~~v~e~f 154 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-K----AKELNVMFIETSAKAGYNVKQLF 154 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHH-H----HHHcCCEEEEecCCCCcCHHHHH
Confidence 9999999999999999876553 36899999999999865432 222221 1 12344679999999999999999
Q ss_pred HHHHHHHh
Q 030122 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~l~~~i~ 178 (182)
.+|++++.
T Consensus 155 ~~i~~~l~ 162 (164)
T d1yzqa1 155 RRVAAALP 162 (164)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhhC
Confidence 99999874
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-35 Score=199.95 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=128.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|||||||+++|+++.+.+ ..++.+. ....+.+ ..+.+.+|||+|++.+..+++.++++++++++
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~ 83 (171)
T d2ew1a1 4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 83 (171)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence 35899999999999999999999998877 6666664 4444555 45789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+..... .++.. .+ .+..++++++|||++|.||++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ilvgnK~D~~~~~~v~~~~~~-~~----~~~~~~~~~~~SAktg~gV~e 157 (171)
T d2ew1a1 84 TYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAE-EF----SEAQDMYYLETSAKESDNVEK 157 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHH-HH----HHHHTCCEEECCTTTCTTHHH
T ss_pred eeecccchhhhhhhhhhhhhcccc-cccccEEEEEeecccccccchhhhHHH-HH----HHhCCCEEEEEccCCCCCHHH
Confidence 999999999999999998886543 36789999999999865332 22222 11 122334599999999999999
Q ss_pred HHHHHHHHHhc
Q 030122 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 ~~~~l~~~i~~ 179 (182)
+|.++++.+.+
T Consensus 158 ~f~~l~~~l~~ 168 (171)
T d2ew1a1 158 LFLDLACRLIS 168 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-34 Score=196.14 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=130.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+++||+++|++|||||||+++|+++.+.+ +.+|++ .....+.. ..+.+.+||++|++.+..++..+++++|++++|
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 81 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence 57899999999999999999999999877 778877 33333444 457899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+|..+..|+..+.......++|+++|+||+|+..... .++. ..+ .+..++++++|||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~e~Sak~g~~i~e~ 156 (167)
T d1kaoa_ 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEG-RAL----AEEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHH-HHH----HHHHTSCEEEECTTCHHHHHHH
T ss_pred eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHH-HHH----HHHcCCeEEEECCCCCcCHHHH
Confidence 99999999999999999887665557899999999999875432 2221 111 1222345999999999999999
Q ss_pred HHHHHHHHh
Q 030122 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~i~ 178 (182)
|.++++++.
T Consensus 157 f~~i~~~i~ 165 (167)
T d1kaoa_ 157 FAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998874
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-35 Score=201.17 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=126.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+||+++|++|||||||+++++++.+.+ +.||++..+..... ..+.+.+||++|++.+. ....+++.++++++||
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 5899999999999999999999999877 89999865443333 45889999999998875 4566788999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCC-HHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEG-LFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~ 169 (182)
|++++++|..+..|+..........+.|+++|+||+|+.... ..++..+ + .+..+++|++|||++|.| |+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~-~----a~~~~~~~~e~Saktg~gnV~e~ 155 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK-L----ATELACAFYECSACTGEGNITEI 155 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTSEEEECCTTTCTTCHHHH
T ss_pred ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHH-H----HHHhCCeEEEEccccCCcCHHHH
Confidence 999999999999887766555555789999999999986543 2333221 1 122345699999999985 9999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|..+++.+.++
T Consensus 156 F~~l~~~i~~~ 166 (168)
T d2atva1 156 FYELCREVRRR 166 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.2e-35 Score=197.47 Aligned_cols=158 Identities=19% Similarity=0.165 Sum_probs=130.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
.+++||+++|.+|||||||+++|.++.+.+ +.+|.+........ ....+.+||++|++++..++..++.++++++
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence 357999999999999999999999999888 88888855544433 4567889999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+... .++.. .+ .+..+++|++|||++|.||+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~SAk~~~nV~ 155 (167)
T d1z0ja1 82 IVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAK-DY----ADSIHAIFVETSAKNAININ 155 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCEEEECBTTTTBSHH
T ss_pred EEeeechhhhhhhHHHhhhhhhhcc-CCcceEEEecccchhccccchhHHHHH-HH----HHHcCCEEEEEecCCCCCHH
Confidence 9999999999999999988775543 47899999999999975432 22222 21 22345679999999999999
Q ss_pred HHHHHHHHHHh
Q 030122 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~~~~~l~~~i~ 178 (182)
++|.+|++++.
T Consensus 156 e~f~~l~~~i~ 166 (167)
T d1z0ja1 156 ELFIEISRRIP 166 (167)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCC
Confidence 99999999874
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=100.00 E-value=2.4e-33 Score=188.38 Aligned_cols=160 Identities=53% Similarity=0.960 Sum_probs=143.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
+||+++|++|||||||+++|.++++....++............+.+.+||++|...+...+..++..++++++++|.+++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~ 80 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence 58999999999999999999999887755555555666677889999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
.++..+..|+..+.........|+++++||+|+.+.....++.........+...++++++||++|+|++++|+||.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence 99999999999998877778899999999999998888888888877777777889999999999999999999999864
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-35 Score=198.84 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=130.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|||||||+++|.++.+.+ +.+|.+.......+ ....+.+||++|++++..++..+++.++++++|
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 84 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence 5899999999999999999999998877 77887755544333 557899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
||.++++++..+..|+..+.... ..++|+++|+||+|+...... .+....+ .+...++++++||++|.|++++|
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~e~Sak~~~gi~e~f 159 (174)
T d2bmea1 85 YDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF----AQENELMFLETSALTGENVEEAF 159 (174)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHHH
T ss_pred EecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHH----HHhCCCEEEEeeCCCCcCHHHHH
Confidence 99999999999999999886654 368999999999998654332 1111222 12345679999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
.++++++.+
T Consensus 160 ~~l~~~i~~ 168 (174)
T d2bmea1 160 VQCARKILN 168 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.4e-35 Score=197.70 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=131.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|||||||+++|.++.+.+ +.+|.+.......+ ..+.+.+||++|++.+..++..++++++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 35799999999999999999999999887 78888865554433 45889999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|||.++.++|+.+..|+..+.... ..+.|+++|+||+|+...... .+....+ .+...+++++|||++|.||+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~e~~~~~----~~~~~~~~~e~SAk~g~~V~e~ 159 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSY----ADDNSLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHH
T ss_pred EeccchhhHHHHHHHHhhhhhhcc-CCCceEEeecccccccccccccHHHHHHH----HHhcCCEEEEeeCCCCCCHHHH
Confidence 999999999999999998886543 468999999999998754322 1222222 1234567999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|.+|++.+.+
T Consensus 160 f~~l~~~i~~ 169 (170)
T d1r2qa_ 160 FMAIAKKLPK 169 (170)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHHHHHhh
Confidence 9999998765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-34 Score=195.47 Aligned_cols=155 Identities=17% Similarity=0.239 Sum_probs=126.5
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|||||||++++.++.+.. +.++.+... ..+.+ ..+.+.+||++|++.+..++..+++++|++++|
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence 4799999999999999999999998877 666666433 34444 456999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||+++.++|+.+..|+..+... .....|+++++||+|+..... .++.. .+ ++...+++++|||++|.|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~e~Saktg~~v~e~ 157 (166)
T d1z0fa1 84 YDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAK-QF----AEENGLLFLEASAKTGENVEDA 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCEEEECCTTTCTTHHHH
T ss_pred eccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHH-HH----HHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999887654 346889999999999865332 22222 22 1233567999999999999999
Q ss_pred HHHHHHHH
Q 030122 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~i 177 (182)
|.+|++.+
T Consensus 158 f~~i~~~i 165 (166)
T d1z0fa1 158 FLEAAKKI 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.2e-35 Score=197.73 Aligned_cols=162 Identities=19% Similarity=0.253 Sum_probs=129.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|||||||+++|.++.+.+ +.||.+.... .+.. ..+.+.+||++|++.+..++..++..+|++++
T Consensus 2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il 81 (170)
T d1ek0a_ 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence 35899999999999999999999999888 8888885443 4444 45899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|||++++.+|+.+..|+....... ....|+++++||+|+.+......+........++..+++|+++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F 160 (170)
T d1ek0a_ 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEeCCcccchhhhhhhhhhhcccc-ccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHH
Confidence 999999999999999988765543 3678999999999985432111111111111223345679999999999999999
Q ss_pred HHHHHHHh
Q 030122 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~l~~~i~ 178 (182)
.+|++.+.
T Consensus 161 ~~i~~~i~ 168 (170)
T d1ek0a_ 161 LGIGEKIP 168 (170)
T ss_dssp HHHHTTSC
T ss_pred HHHHHHhc
Confidence 99988764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-34 Score=195.25 Aligned_cols=163 Identities=14% Similarity=0.158 Sum_probs=127.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+.+||+++|++|||||||+++|+++.+.. +.||++ .....+.. ..+.+.+||++|++.+..++..+++++|++++|
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 83 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC 83 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeee
Confidence 45899999999999999999999999877 888888 33333444 567889999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-HHHHhhc--------ccccC-CCceEEEEeccc
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA-AVSEALE--------LHKIK-NRQWAIFKTCAI 161 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~-~~~~~~~--------~~~~~-~~~~~~~~~Sa~ 161 (182)
||+++++||+.+..|+....... ..++|+++|+||+|+.+..... +...... ...++ ...+.|++|||+
T Consensus 84 ~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk 162 (183)
T d1mh1a_ 84 FSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (183)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred eccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCC
Confidence 99999999999987665555443 3689999999999986542211 1111110 01111 234689999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030122 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~ 179 (182)
+|.||+++|.++++.+++
T Consensus 163 ~~~~V~e~F~~l~~~il~ 180 (183)
T d1mh1a_ 163 TQRGLKTVFDEAIRAVLC 180 (183)
T ss_dssp TCTTHHHHHHHHHHHHSC
T ss_pred CCcCHHHHHHHHHHHHcC
Confidence 999999999999998764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.7e-34 Score=196.76 Aligned_cols=158 Identities=20% Similarity=0.279 Sum_probs=130.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+|+|++|||||||+++|.++.+.. +.||.+... ..+.+ ..+.+.+|||+|++++..+|..++++++++|+
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~ 84 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 84 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 45899999999999999999999998777 788888444 34544 56789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||+++++++..+..|+..+.+. ...+.|+++|+||+|+.+... .++..... +...+.++++||++|.|+++
T Consensus 85 v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~gi~e 158 (194)
T d2bcgy1 85 VYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVED 158 (194)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHHH
T ss_pred EEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhh-----hccCcceEEEecCcCccHHH
Confidence 99999999999999988887554 347899999999999976433 22222211 22335599999999999999
Q ss_pred HHHHHHHHHhc
Q 030122 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 ~~~~l~~~i~~ 179 (182)
+|.++++.+.+
T Consensus 159 ~f~~l~~~i~~ 169 (194)
T d2bcgy1 159 AFLTMARQIKE 169 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.2e-34 Score=193.78 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=116.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe-----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~-----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
-+||+++|++|||||||+++|+++.+.+ +.+|.+........ ....+.+||++|++++...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 4799999999999999999999999877 77777643333333 45789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhcc---CCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|||++++.+|+.+..|+.++.... ...++|+++|+||+|+.+... ..+..+.+... ...+++++|||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~---~~~~~~~e~SA~~g~g 158 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS---LGDIPLFLTSAKNAIN 158 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH---TTSCCEEEEBTTTTBS
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHH---cCCCeEEEEeCCCCcC
Confidence 999999999999999998876532 235789999999999875322 12222222111 1234599999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 030122 166 LFEGMDWLSNTLKSGG 181 (182)
Q Consensus 166 i~~~~~~l~~~i~~~~ 181 (182)
++++|.+|++.+.+++
T Consensus 159 v~e~f~~l~~~~l~~~ 174 (175)
T d1ky3a_ 159 VDTAFEEIARSALQQN 174 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-34 Score=194.08 Aligned_cols=158 Identities=18% Similarity=0.264 Sum_probs=120.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCceeeEEE--Ee--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNVETV--QY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~--~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
..+||+++|++|||||||+++++++.+.. ..++.+.+.... .. ..+.+.+|||+|++++..++..+++++|+++
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i 84 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence 35799999999999999999999998765 566666555544 33 3468899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||+++++++..+..|+..+.... ....|+++|+||+|...... .++.. .+ .+..+++++++||++|.|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~g~gi~ 158 (170)
T d2g6ba1 85 LLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGE-KL----AKEYGLPFMETSAKTGLNVD 158 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHH-HH----HHHHTCCEEECCTTTCTTHH
T ss_pred EEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHH-HH----HHHcCCEEEEEeCCCCcCHH
Confidence 9999999999999999988876654 36789999999999887533 22222 11 12234569999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|.+|++.+++
T Consensus 159 e~f~~l~~~i~k 170 (170)
T d2g6ba1 159 LAFTAIAKELKR 170 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC
Confidence 999999998863
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-33 Score=194.88 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=127.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE-EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+||+++|++|||||||+++|+++.+.. +.||++..... ... ..+.+.+||++|+++++.++..+++++|++++||
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 82 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 82 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeeccc
Confidence 5899999999999999999999999877 88888844433 333 5578999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHH---------hhcccccCC-CceEEEEecccC
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSE---------ALELHKIKN-RQWAIFKTCAIK 162 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~Sa~~ 162 (182)
|+++++||+.+..|+....... ..+.|+++|+||+|+.+.....+... ..+...++. ..++|++|||++
T Consensus 83 d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 161 (191)
T d2ngra_ 83 SVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT 161 (191)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred ccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence 9999999999987766665543 36899999999999875321111000 000011111 335699999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 030122 163 GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~~ 180 (182)
|.|++++|+.+++.+.+.
T Consensus 162 ~~~V~e~f~~l~~~~~~~ 179 (191)
T d2ngra_ 162 QKGLKNVFDEAILAALEP 179 (191)
T ss_dssp CTTHHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhcC
Confidence 999999999999887653
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-33 Score=191.19 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=132.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|||||||+++|.++.+.. +.++.+.. ...+.+ ..+.+.+||++|+++++.++..++.++|+++
T Consensus 5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii 84 (177)
T d1x3sa1 5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 84 (177)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 345899999999999999999999999877 66666643 344455 4578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+|||++++.+++.+..|+..+.........|+++++||.|...... .++.. .+ .+..+++++++||++|+|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~-~~----~~~~~~~~~e~Sa~tg~gv~e 159 (177)
T d1x3sa1 85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGL-KF----ARKHSMLFIEASAKTCDGVQC 159 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHH-HH----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHH-HH----HHHCCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999987776667899999999999865332 22222 21 233456799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030122 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 ~~~~l~~~i~~~ 180 (182)
+|+++++.+.+.
T Consensus 160 ~f~~l~~~l~~~ 171 (177)
T d1x3sa1 160 AFEELVEKIIQT 171 (177)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHccC
Confidence 999999988865
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.7e-35 Score=200.83 Aligned_cols=160 Identities=16% Similarity=0.267 Sum_probs=129.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEe------------CCEEEEEEECCCCCCChhhhhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQY------------NNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~------------~~~~~~i~d~~g~~~~~~~~~~ 80 (182)
..+||+++|++|||||||+++|+++.+.+ +.++.+.. ...+.+ ..+.+.+||++|++.++.++..
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~ 83 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA 83 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence 35899999999999999999999999877 66665533 333333 2368999999999999999999
Q ss_pred hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEe
Q 030122 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++++|++|+|||++++.+|+.+..|+..+.........|+++|+||+|+..... .++.. .+ .+..+++++++
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~-~~----~~~~~~~~~e~ 158 (186)
T d2f7sa1 84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAR-EL----ADKYGIPYFET 158 (186)
T ss_dssp HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCCEEEE
T ss_pred HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHH-HH----HHHcCCEEEEE
Confidence 9999999999999999999999999998887766667889999999999975432 22222 11 12234569999
Q ss_pred cccCCCCHHHHHHHHHHHHhcC
Q 030122 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
||++|+|++++|+++++.+.++
T Consensus 159 Sak~~~~i~e~f~~l~~~i~~k 180 (186)
T d2f7sa1 159 SAATGQNVEKAVETLLDLIMKR 180 (186)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-34 Score=197.55 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=102.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
.-+||+++|.+|||||||+++|+++.+.+ ..+|.+ +....+.++ .+.+.+||+||++.+..++..+++++|++|+
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~ 84 (173)
T d2fu5c1 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 84 (173)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence 35799999999999999999999988766 677776 444455553 4788899999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|||++++.|+..+..|+..+... ...+.|+++|+||+|....... .+..... .....+++++|||++|+|++++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~gv~e~ 159 (173)
T d2fu5c1 85 VYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKL----ALDYGIKFMETSAKANINVENA 159 (173)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHH----HHHHTCEEEECCC---CCHHHH
T ss_pred EEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHH----HHhcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999998888544 3478999999999999865432 1111111 1234567999999999999999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|++|++.+.++
T Consensus 160 f~~l~~~i~~k 170 (173)
T d2fu5c1 160 FFTLARDIKAK 170 (173)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-34 Score=196.03 Aligned_cols=158 Identities=19% Similarity=0.230 Sum_probs=124.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+|+|++|||||||++++.++.+.+ +.++.+... ..... ....+.+||++|++.+..++..++..+|++|+|
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 82 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence 4799999999999999999999998877 555555333 33333 457899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
||++++++|+.+..|+..+.... ..++|+++|+||+|+...... .+....+. +...++++++||++|.|++++|
T Consensus 83 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~a----~~~~~~~~e~Sa~tg~~V~e~f 157 (173)
T d2a5ja1 83 YDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA----REHGLIFMETSAKTACNVEEAF 157 (173)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH----HHHTCEEEEECTTTCTTHHHHH
T ss_pred EeecChHHHHhHHHHHHHHHHhC-CCCCeEEEEecCCchhhhhhhHHHHHHHHH----HHcCCEEEEecCCCCCCHHHHH
Confidence 99999999999999998886653 468999999999998654322 11122221 2234579999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
.++++.+.+
T Consensus 158 ~~i~~~i~~ 166 (173)
T d2a5ja1 158 INTAKEIYR 166 (173)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=100.00 E-value=3.7e-32 Score=185.67 Aligned_cols=164 Identities=44% Similarity=0.715 Sum_probs=145.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
.+.+||+|+|.+|||||||++++.++++.+..++.+.....+......+.+||+++++..+..+..++..++++++|+|.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~ 92 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 92 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEET
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeeccc
Confidence 34589999999999999999999999988877888888888888899999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
++..++.....++............|+++|+||+|+......+++.+.+.......+.++++++||++|+|++++|+||.
T Consensus 93 ~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~ 172 (177)
T d1zj6a1 93 TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 172 (177)
T ss_dssp TCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999998888777777666668999999999999998888888888888887788889999999999999999999999
Q ss_pred HHHh
Q 030122 175 NTLK 178 (182)
Q Consensus 175 ~~i~ 178 (182)
++++
T Consensus 173 ~~lk 176 (177)
T d1zj6a1 173 SRLK 176 (177)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8874
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-33 Score=191.22 Aligned_cols=159 Identities=23% Similarity=0.305 Sum_probs=126.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
-+||+++|++|||||||+++++++.+.+ +.||.+... ..+.+ ..+.+.+||+||++.++.++..++++++++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 4799999999999999999999999877 788887444 44444 457888999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
||.+++++++.+..|+....... ....|++++++|.|+.......+....+. +..++++++|||++|.|++++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~e~f~ 156 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIFF 156 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHHH
T ss_pred EECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhhhhhhhHHHHHHHH----HhcCCeEEEECCCCCCCHHHHHH
Confidence 99999999999988887776543 46789999999999877544333333332 12345699999999999999999
Q ss_pred HHHHHHhcC
Q 030122 172 WLSNTLKSG 180 (182)
Q Consensus 172 ~l~~~i~~~ 180 (182)
+|++.+.++
T Consensus 157 ~l~~~i~~k 165 (166)
T d1g16a_ 157 TLAKLIQEK 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998765
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.7e-33 Score=189.00 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=126.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|||||||++++.++.+.. +.++.+ .....+.+ ..+.+.+||++|++++..++..+++.++++|+
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~ 82 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 82 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence 35799999999999999999999998877 666665 44444555 34789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|||.++++||..+..|+..+.... ..++|+++|+||+|+.+.... .+...... .....+++++||++|.|++++
T Consensus 83 v~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~i~e~ 157 (175)
T d2f9la1 83 VYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFA----EKNNLSFIETSALDSTNVEEA 157 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHH
T ss_pred EEECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHhh----cccCceEEEEecCCCcCHHHH
Confidence 999999999999999998887654 367999999999999764322 12111111 223457999999999999999
Q ss_pred HHHHHHHHh
Q 030122 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~i~ 178 (182)
|+++++.+.
T Consensus 158 f~~l~~~i~ 166 (175)
T d2f9la1 158 FKNILTEIY 166 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.3e-33 Score=191.71 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=130.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+|+|.+|||||||+++|+++.+.. +.||.+.......+ ..+.+.+||++|+..+...+..++..++++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 799999999999999999999999877 88998866555444 5678999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhcc---CCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|.+++.++..+..|+..+.... ...++|+++|+||+|+.+.....+....+. .....+++++|||++|.||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~e~Sak~~~gI~e~ 159 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC---YSKNNIPYFETSAKEAINVEQA 159 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH---HHTTSCCEEECBTTTTBSHHHH
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHH---HHhcCCeEEEEcCCCCcCHHHH
Confidence 9999999999999988776542 235689999999999876433222222221 1233567999999999999999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|+++++.+.++
T Consensus 160 f~~l~~~i~~~ 170 (184)
T d1vg8a_ 160 FQTIARNALKQ 170 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999887653
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.3e-33 Score=189.75 Aligned_cols=163 Identities=13% Similarity=0.155 Sum_probs=127.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+.||+++|++|||||||+++++++.+.+ +.||++ .....+.. ..+.+.+||++|++.+...++.+++++|++++||
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 5799999999999999999999999887 888877 43444444 5688999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHh--------hcccccCC-CceEEEEecccC
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEA--------LELHKIKN-RQWAIFKTCAIK 162 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~--------~~~~~~~~-~~~~~~~~Sa~~ 162 (182)
|+++++||+.+..|+....... ..+.|+++|+||+|+...... .+.... .....+++ ....|++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~ 160 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 160 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred ecccCCCHHHHHHHHHHHHhcc-CCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence 9999999999998877765543 268999999999998642111 000000 00011111 235799999999
Q ss_pred CC-CHHHHHHHHHHHHhcC
Q 030122 163 GE-GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~-~i~~~~~~l~~~i~~~ 180 (182)
|. |++++|+.+++.+.++
T Consensus 161 ~~n~i~~~F~~~~~~~l~k 179 (179)
T d1m7ba_ 161 SENSVRDIFHVATLACVNK 179 (179)
T ss_dssp BHHHHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHhcC
Confidence 98 5999999999988764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-33 Score=190.02 Aligned_cols=160 Identities=11% Similarity=0.006 Sum_probs=122.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCce--eeEEEEe--CCEEEEEEECCCCCCC-hhhhhhhCCCCCEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGF--NVETVQY--NNIKFQVWDLGGQTSI-RPYWRCYFPNTEAV 88 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~--~~~~~~~--~~~~~~i~d~~g~~~~-~~~~~~~~~~~~~~ 88 (182)
..+||+++|++|+|||||+++|.+..+.. ..+|.+. ....+.+ ..+.+.+||+++.... +.++..+++++|++
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~ 81 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence 36899999999999999999999876543 4555553 3444444 4567889997753321 22667789999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
|+|||++++.+|+.+..|+..+.......++|+++|+||+|+...+. .++. +.+ .+..++++++|||++|.|+
T Consensus 82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~-~~~----a~~~~~~~~e~Sak~g~~i 156 (172)
T d2g3ya1 82 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RAC----AVVFDCKFIETSAAVQHNV 156 (172)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTBSH
T ss_pred eeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHH-HHH----HHHcCCeEEEEeCCCCcCH
Confidence 99999999999999999999988776667899999999999876432 2332 112 1223467999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++|.+|++.+..+
T Consensus 157 ~~~f~~l~~~i~~r 170 (172)
T d2g3ya1 157 KELFEGIVRQVRLR 170 (172)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988754
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.7e-32 Score=183.82 Aligned_cols=160 Identities=14% Similarity=0.208 Sum_probs=126.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
.-+||+|+|++|||||||++++.++.+.+ +.+|.+... ..+.. ..+.+.+||++|+...+..+..++..++++++
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 84 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 84 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence 45799999999999999999999999887 777777443 33333 45788999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhc---cCCCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEE---EELKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++|.+++.+|+.+..|+..+... ....+.|+++|+||+|+.+. ...++... +.. +...+++++|||++|.||
T Consensus 85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~-~~~---~~~~~~~~e~Sak~~~gI 160 (174)
T d1wmsa_ 85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQA-WCR---DNGDYPYFETSAKDATNV 160 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHH-HHH---HTTCCCEEECCTTTCTTH
T ss_pred EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHH-HHH---HcCCCeEEEEcCCCCcCH
Confidence 99999999999999998777543 23357899999999999653 22333322 211 123456999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030122 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~~~~~l~~~i~~ 179 (182)
+++|++|++.+.+
T Consensus 161 ~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 161 AAAFEEAVRRVLA 173 (174)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998864
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=100.00 E-value=1.5e-30 Score=175.86 Aligned_cols=166 Identities=57% Similarity=0.930 Sum_probs=150.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
+.+||+++|.+|||||||++++.++.+....+|.+........+.+.+.+||.+|.+.+...+..++...+++++++|..
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC 83 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhh
Confidence 45899999999999999999999999988778888777777789999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
+..++.....++............|+++++||.|+.......++...+....+....++++++||++|.|++++|++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~ 163 (169)
T d1upta_ 84 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 163 (169)
T ss_dssp CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred hcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999888888777777666688999999999999988888888888877777788899999999999999999999999
Q ss_pred HHhcCC
Q 030122 176 TLKSGG 181 (182)
Q Consensus 176 ~i~~~~ 181 (182)
.+.+++
T Consensus 164 ~l~~k~ 169 (169)
T d1upta_ 164 TLKSRQ 169 (169)
T ss_dssp HHHTCC
T ss_pred HHHhCC
Confidence 998764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.3e-32 Score=183.45 Aligned_cols=155 Identities=13% Similarity=0.096 Sum_probs=120.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
.+||+++|++|||||||+++++++.+....+|.+ .....+.+ ..+.+.+||++|+.++. +++.+|++|+|||
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilVfd 79 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFS 79 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEEee
Confidence 5999999999999999999999999877666666 33344555 44789999999988753 5678999999999
Q ss_pred CCCcchHHHHHHHHHHHHhcc--CCCCCeEEEEeeCCCCCCCCC----HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALD----DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+++++||+.+..|+..+.... ...++|+++|+||.|+..... .++. ..+. .....++|++|||++|.|++
T Consensus 80 ~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~-~~~~---~~~~~~~~~e~SAk~~~~v~ 155 (175)
T d2bmja1 80 LEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA-RALC---ADMKRCSYYETCATYGLNVD 155 (175)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHH-HHHH---HTSTTEEEEEEBTTTTBTHH
T ss_pred cccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHH-HHHH---HHhCCCeEEEeCCCCCcCHH
Confidence 999999999999988775432 346789999999998754322 1222 1111 12345679999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030122 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~~~~~l~~~i~~~ 180 (182)
++|..+++.+...
T Consensus 156 ~~F~~l~~~i~~~ 168 (175)
T d2bmja1 156 RVFQEVAQKVVTL 168 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.2e-32 Score=184.94 Aligned_cols=153 Identities=22% Similarity=0.300 Sum_probs=121.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChh-hhhhhCCCCCEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRP-YWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~i~ 90 (182)
-+||+++|++|||||||+++|.++.+.+ +.++.+... ....+ ....+.+||++|...+.. .++.+++++|++|+
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il 81 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence 5799999999999999999999999877 677766333 33333 567899999999877654 57788999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccC---CCC
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIK---GEG 165 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~ 165 (182)
|||++++++|+.+..|+..+.+.....++|+++|+||+|+.+.. ..++..+ + ++..++++++|||++ ++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~SAkt~~~~~~ 156 (165)
T d1z06a1 82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-F----ADTHSMPLFETSAKNPNDNDH 156 (165)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCCEEECCSSSGGGGSC
T ss_pred EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHH-H----HHHCCCEEEEEecccCCcCcC
Confidence 99999999999999999998877666789999999999987643 2333222 1 123345699999987 569
Q ss_pred HHHHHHHHH
Q 030122 166 LFEGMDWLS 174 (182)
Q Consensus 166 i~~~~~~l~ 174 (182)
|+++|.+|+
T Consensus 157 V~e~F~~lA 165 (165)
T d1z06a1 157 VEAIFMTLA 165 (165)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998873
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8.6e-30 Score=171.34 Aligned_cols=157 Identities=30% Similarity=0.522 Sum_probs=140.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
||+++|++|||||||+++|.++.+....||.+.......+....+.+||++|...+...+..++..++++++++|.++..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 81 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 81 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence 89999999999999999999999888899999888888888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-------CCCceEEEEecccCCCCHHHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-------KNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
++.....|+..........+.|+++++||.|+.......++.+.+.+... ..+.+.+++|||++|+|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~ 161 (166)
T d2qtvb1 82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161 (166)
T ss_dssp GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHH
Confidence 99999988888888777789999999999999887777777766644432 24567899999999999999999
Q ss_pred HHHH
Q 030122 172 WLSN 175 (182)
Q Consensus 172 ~l~~ 175 (182)
||.+
T Consensus 162 ~l~~ 165 (166)
T d2qtvb1 162 WLSQ 165 (166)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 9864
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.97 E-value=6.7e-29 Score=170.12 Aligned_cols=163 Identities=25% Similarity=0.481 Sum_probs=132.7
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
.++.||+++|++|||||||+++|.++.+....++.+.....+.+....+..||+.++..+...+..+....+++++++|.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 90 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDC 90 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeeec
Confidence 45689999999999999999999999887777888888888888889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc------------ccCCCceEEEEecccC
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH------------KIKNRQWAIFKTCAIK 162 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~ 162 (182)
++...+.....++..........+.|+++++||.|+.......++.+.+... ....+.+++++|||++
T Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~t 170 (186)
T d1f6ba_ 91 ADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLK 170 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTT
T ss_pred cCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCC
Confidence 9999998888877777776667899999999999998877777766655432 2234567899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i 177 (182)
|+|++++|+||.+++
T Consensus 171 g~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 171 RQGYGEGFRWMAQYI 185 (186)
T ss_dssp TBSHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=6.9e-30 Score=177.27 Aligned_cols=164 Identities=21% Similarity=0.284 Sum_probs=132.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
+++||+++|+.|||||||++||..+.+. +.||+|+....+....+.+.+||++|++.++..|..+++.++++++|||.+
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 79 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence 4689999999999999999999988774 789999999999899999999999999999999999999999999999987
Q ss_pred Ccc----------hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC------------------CCHHH----HH-Hh
Q 030122 96 DTD----------RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA------------------LDDAA----VS-EA 142 (182)
Q Consensus 96 ~~~----------s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~------------------~~~~~----~~-~~ 142 (182)
+.. .+.+...++..++......+.|+++++||+|+... ..... +. ..
T Consensus 80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 159 (200)
T d2bcjq2 80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF 159 (200)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence 643 45555566666666666789999999999997421 01111 11 11
Q ss_pred hcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 143 LELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
.......++.+.+++|||++|.|++++|+.+.+.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~ 197 (200)
T d2bcjq2 160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197 (200)
T ss_dssp HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence 22333355778899999999999999999999888754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=4.9e-28 Score=167.20 Aligned_cols=162 Identities=19% Similarity=0.291 Sum_probs=126.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
+++||+++|+.|||||||++||.... .||.++....+......+.+||++|+++++.+|..+++.++++++|+|++
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~ 76 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS 76 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH----SCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC----CCCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence 46899999999999999999997554 46777777788889999999999999999999999999999999999998
Q ss_pred CcchH----------HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC-----------------CCCHHHH----HHhh-
Q 030122 96 DTDRI----------QTAKEEFHAILEEEELKGAVALIFANKQDLPG-----------------ALDDAAV----SEAL- 143 (182)
Q Consensus 96 ~~~s~----------~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~-----------------~~~~~~~----~~~~- 143 (182)
+.+++ .+...++..++......+.|+++++||+|+.. .....+. ...+
T Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 156 (195)
T d1svsa1 77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE 156 (195)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHH
Confidence 76544 44555666676666678899999999998621 1111111 1111
Q ss_pred ccc-ccCCCceEEEEecccCCCCHHHHHHHHHHHHhcCC
Q 030122 144 ELH-KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 144 ~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 181 (182)
... ....+.+++++|||++|.||+++|+.+.+.+.+++
T Consensus 157 ~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~n 195 (195)
T d1svsa1 157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 195 (195)
T ss_dssp TTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhcC
Confidence 111 12346788999999999999999999999887653
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=2.1e-28 Score=169.92 Aligned_cols=161 Identities=21% Similarity=0.280 Sum_probs=123.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
.+||+++|++|||||||++||. +.+ +.||+|+....+.++...+.+||++|++.++..|..+++.++++++++|.+
T Consensus 2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~ 78 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 78 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence 5899999999999999999994 333 889999999999999999999999999999999999999999999999988
Q ss_pred Cc----------chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC------------------CCHHHH----HHhh
Q 030122 96 DT----------DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA------------------LDDAAV----SEAL 143 (182)
Q Consensus 96 ~~----------~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~------------------~~~~~~----~~~~ 143 (182)
+. .++.....++..++......++|+++++||+|+.+. ...+.. ...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f 158 (200)
T d1zcba2 79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF 158 (200)
T ss_dssp CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence 64 457788888888888877789999999999997421 111111 1111
Q ss_pred c--ccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 144 E--LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 144 ~--~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
. ......+.+.+++|||+++.||+++|+.+.+.+.++
T Consensus 159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~ 197 (200)
T d1zcba2 159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 197 (200)
T ss_dssp HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence 1 111234567888999999999999999998877653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=2.6e-27 Score=166.94 Aligned_cols=160 Identities=22% Similarity=0.301 Sum_probs=129.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 96 (182)
..||+++|+.|||||||++++..+. ..||+|+....+.++++.+.+||++|++.++..|..++++++++++|+|+++
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~ 82 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSS 82 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTG
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEccc
Confidence 4799999999999999999997554 4689999999999999999999999999999999999999999999999875
Q ss_pred ----------cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC------CH------------------------
Q 030122 97 ----------TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL------DD------------------------ 136 (182)
Q Consensus 97 ----------~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~------~~------------------------ 136 (182)
..++.+...++..++......++|++|++||+|+.+.. ..
T Consensus 83 ~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~ 162 (221)
T d1azta2 83 YNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDP 162 (221)
T ss_dssp GGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCH
T ss_pred cccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCch
Confidence 35677778888888888888899999999999985321 00
Q ss_pred --HH----HHHhh----cccccCCCceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 137 --AA----VSEAL----ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 137 --~~----~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
.+ +...+ .......+.+..++|||+++.+++.+|+.+.+.|.+
T Consensus 163 ~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 163 RVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence 01 11111 111223456788999999999999999888776654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=7.7e-26 Score=154.31 Aligned_cols=154 Identities=14% Similarity=-0.035 Sum_probs=107.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh--------hhhhCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFPNT 85 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~~~ 85 (182)
-+|+|+|.+|||||||+++|++..... ...|...........+..+.+|||||....... ...++.++
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a 85 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 85 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccccc
Confidence 379999999999999999999876533 223333555555668899999999998654332 23457889
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|+|++++.+... .++...+... ..+.|+++|+||+|+... .++..+.+... .....++++||++|.|
T Consensus 86 d~il~v~D~~~~~~~~~--~~i~~~l~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~~~---~~~~~~~~iSA~~~~g 157 (178)
T d1wf3a1 86 NAVVWVVDLRHPPTPED--ELVARALKPL-VGKVPILLVGNKLDAAKY--PEEAMKAYHEL---LPEAEPRMLSALDERQ 157 (178)
T ss_dssp SEEEEEEETTSCCCHHH--HHHHHHHGGG-TTTSCEEEEEECGGGCSS--HHHHHHHHHHT---STTSEEEECCTTCHHH
T ss_pred cceeeeechhhhhcccc--cchhhheecc-ccchhhhhhhcccccccC--HHHHHHHHHhh---cccCceEEEecCCCCC
Confidence 99999999987655332 3333333322 257899999999999753 23332222111 1123588999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
+++++++|.+.+.+
T Consensus 158 i~~L~~~i~~~lpe 171 (178)
T d1wf3a1 158 VAELKADLLALMPE 171 (178)
T ss_dssp HHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999887643
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=9.8e-25 Score=146.32 Aligned_cols=148 Identities=18% Similarity=0.140 Sum_probs=109.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc--ccC--CCceeeEEEEeCCEEEEEEECCCCCCChh--------hhhhhCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPNT 85 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~ 85 (182)
+||+++|++|||||||+++|++..... ..+ +.......+...+..+.++|++|...... ....++..+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 81 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence 699999999999999999999877543 222 22233445566889999999999765432 133456789
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++++|..+..++.....|...+.... .+.|+++|+||+|+..... .+ .+....+++++||++|.|
T Consensus 82 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~iilv~NK~Dl~~~~~--------~~--~~~~~~~~~~iSAk~~~g 149 (161)
T d2gj8a1 82 DRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGETL--------GM--SEVNGHALIRLSARTGEG 149 (161)
T ss_dssp SEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCCC--------EE--EEETTEEEEECCTTTCTT
T ss_pred cccceeeccccccchhhhhhhhhhhhhcc--cccceeeccchhhhhhhHH--------HH--HHhCCCcEEEEECCCCCC
Confidence 99999999998887766665544443332 5789999999999764321 11 122456799999999999
Q ss_pred HHHHHHHHHHHH
Q 030122 166 LFEGMDWLSNTL 177 (182)
Q Consensus 166 i~~~~~~l~~~i 177 (182)
+++++++|.+.+
T Consensus 150 i~~L~~~l~~~l 161 (161)
T d2gj8a1 150 VDVLRNHLKQSM 161 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 999999998763
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=7.4e-25 Score=149.60 Aligned_cols=154 Identities=21% Similarity=0.184 Sum_probs=105.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCC-------hhhhhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI-------RPYWRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~-------~~~~~~~~~~~~~ 87 (182)
.|+++|.+|||||||+|+|++..... ...|.......... .+..+.+|||||.... .......+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 59999999999999999999766433 23333343333333 6778999999995432 1223345678999
Q ss_pred EEEEEeCCCc--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++++|.... ..+.....|+..... ...++|+++|+||+|+......+++.+.+. ....+++.+||++|.|
T Consensus 83 ~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~iSA~tg~g 155 (180)
T d1udxa2 83 LLYVLDAADEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAG 155 (180)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTT
T ss_pred hhhhcccccccccchhhhhhhhhcccc--ccchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hcCCeEEEEEcCCCCC
Confidence 9999998653 233333344333211 124679999999999986543344433332 2355699999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++++.|.+.+.+
T Consensus 156 id~L~~~i~~~l~~ 169 (180)
T d1udxa2 156 LPALKEALHALVRS 169 (180)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999888865
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=2.6e-24 Score=149.99 Aligned_cols=158 Identities=22% Similarity=0.252 Sum_probs=116.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe---CCEEEEEEECCCCCCCh-hhhhhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIR-PYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~i~v~d~ 94 (182)
+|+++|++|||||||+++|.++.+....+|.+.....+.+ .++.+.+||++|++.++ ..+..++..++++++|+|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~ 81 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 81 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence 6999999999999999999999888777888877777766 57899999999998875 4678888999999999999
Q ss_pred CCcch-HHHHHHHHHHHHhcc--CCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-----------------------cc
Q 030122 95 SDTDR-IQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDDAAVSEALELH-----------------------KI 148 (182)
Q Consensus 95 ~~~~s-~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-----------------------~~ 148 (182)
++..+ +.....++..++... ...++|+++++||+|+..+...+++.+.+..+ ..
T Consensus 82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
T d2fh5b1 82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 161 (207)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence 98766 455555655554321 22568999999999999877765544332100 00
Q ss_pred -----------CCCceEEEEecccCCCC------HHHHHHHHHHH
Q 030122 149 -----------KNRQWAIFKTCAIKGEG------LFEGMDWLSNT 176 (182)
Q Consensus 149 -----------~~~~~~~~~~Sa~~~~~------i~~~~~~l~~~ 176 (182)
....+.++++|+++|.| ++++-+|+.+.
T Consensus 162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence 01346789999999886 78888887653
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=2.8e-24 Score=143.90 Aligned_cols=146 Identities=21% Similarity=0.167 Sum_probs=108.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCC---------hhhhhhhCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYFPN 84 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~~~ 84 (182)
+||+++|.+|||||||+|+|++..... ...+.......+...+..+.+|||||.... .......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 699999999999999999999876433 223333445556668899999999994221 1122334567
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++++|+|.+++.......-+ ..+ ...++++++||+|+.+....+++...+... .+++.+||++|+
T Consensus 81 ad~ii~v~d~~~~~~~~~~~~~-~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~------~~~~~vSA~~g~ 147 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDRKIL-ERI------KNKRYLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGE 147 (160)
T ss_dssp CSEEEEEEETTSCCCHHHHHHH-HHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTCS------TTEEEEEGGGTC
T ss_pred CCEEEEEEeCCCCcchhhhhhh-hhc------ccccceeeeeeccccchhhhHHHHHHhCCC------CcEEEEECCCCC
Confidence 9999999999988775543322 222 567899999999999887777777666532 248999999999
Q ss_pred CHHHHHHHHHHH
Q 030122 165 GLFEGMDWLSNT 176 (182)
Q Consensus 165 ~i~~~~~~l~~~ 176 (182)
|+++++++|.+.
T Consensus 148 gi~~L~~~I~ke 159 (160)
T d1xzpa2 148 GLEKLEESIYRE 159 (160)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc
Confidence 999999998764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=2e-24 Score=146.26 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=101.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCC---------hhhhhhhCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYFPNT 85 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~~~~ 85 (182)
+|+++|++|||||||+++|++..... ...|.......+......+.+||++|.... ......++..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 69999999999999999999876542 333433555666778899999999995332 12334456789
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|+++++.|.+....... ..++..+.. .++|+++|+||+|+......+...+..... ...++++||++|.|
T Consensus 82 d~i~~~~~~~~~~~~~~-~~~~~~l~~----~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~i~iSAk~g~g 151 (171)
T d1mkya1 82 DLVLFVVDGKRGITKED-ESLADFLRK----STVDTILVANKAENLREFEREVKPELYSLG-----FGEPIPVSAEHNIN 151 (171)
T ss_dssp SEEEEEEETTTCCCHHH-HHHHHHHHH----HTCCEEEEEESCCSHHHHHHHTHHHHGGGS-----SCSCEECBTTTTBS
T ss_pred cEEEEeecccccccccc-ccccccccc----ccccccccchhhhhhhhhhhHHHHHHHhcC-----CCCeEEEecCCCCC
Confidence 99999999876654432 223333322 468999999999986432111111111111 12368899999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 030122 166 LFEGMDWLSNTLKSGG 181 (182)
Q Consensus 166 i~~~~~~l~~~i~~~~ 181 (182)
+++++++|.+.+.++.
T Consensus 152 id~L~~~i~~~l~e~~ 167 (171)
T d1mkya1 152 LDTMLETIIKKLEEKG 167 (171)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCC
Confidence 9999999999887653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.91 E-value=1.7e-24 Score=147.67 Aligned_cols=160 Identities=15% Similarity=0.093 Sum_probs=111.2
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---c-------cCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---T-------IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~-------~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 84 (182)
.++++|+++|.+|+|||||+|+|++..... . ..+.......+.+.+..+.++|++|+..+.......+..
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~ 82 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 82 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence 467899999999999999999999643222 1 111113333445588999999999999888888888999
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH---HHHHhhcccccCCCceEEEEeccc
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA---AVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+|++++|+|.++....+... .+..+.. .++|+++|+||+|+.+..... +..+.+..........+++++||+
T Consensus 83 ~d~~ilv~d~~~g~~~~~~~-~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~ 157 (179)
T d1wb1a4 83 IDLALIVVDAKEGPKTQTGE-HMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 157 (179)
T ss_dssp CCEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred ccccccccccccccchhhhh-hhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence 99999999998765433322 2222222 578999999999998643221 122222111122245679999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030122 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~ 179 (182)
+|+|++++++.|.+.+.+
T Consensus 158 ~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 158 TGFGVDELKNLIITTLNN 175 (179)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcCCc
Confidence 999999999999988765
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=3.9e-23 Score=141.55 Aligned_cols=161 Identities=14% Similarity=-0.007 Sum_probs=107.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCCh------------hhhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR------------PYWR 79 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~------------~~~~ 79 (182)
..+||+++|.+|+|||||+|+|++..... ...+.......+.+.+..+.++|++|..... ....
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 86 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 86 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHH
Confidence 35899999999999999999999876432 2222234445566688899999999964322 2333
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
..++.+|++++|+|+..+..-+ ...+...+.. .+.|+++|+||+|+..... ..++.+.+..........+++.
T Consensus 87 ~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 161 (186)
T d1mkya2 87 DSIEKADVVVIVLDATQGITRQ-DQRMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 161 (186)
T ss_dssp HHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhcCCEEEEeecccccchhh-HHHHHHHHHH----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEE
Confidence 4456789999999998654322 2222222222 5789999999999865432 3344333322222223456999
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCC
Q 030122 158 TCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~~~~ 181 (182)
+||++|.|+++++++|.+.+.+..
T Consensus 162 vSa~~g~gv~~L~~~i~~~~~~~~ 185 (186)
T d1mkya2 162 TSADKGWNIDRMIDAMNLAYASYT 185 (186)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999988876643
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=9.9e-24 Score=144.26 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=98.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCCh---------------hhhhhhC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR---------------PYWRCYF 82 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~---------------~~~~~~~ 82 (182)
.|+++|.+|||||||+|+|++.+... ..|........+.+.. +.++||||..... .......
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 79 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccccc--ceecccCCceeccccccccccccchhhhhhhhhcc
Confidence 68999999999999999999876543 2222222233344443 5689999953211 1223345
Q ss_pred CCCCEEEEEEeCCCcchHHHHH----------HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCC
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAK----------EEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKN 150 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~----------~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~ 150 (182)
+.+|++++|+|...+....... ..+..+ . ..++|+++|+||+|+...... ..+...+.. ....
T Consensus 80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l-~---~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~~ 154 (184)
T d2cxxa1 80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL-R---ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSE 154 (184)
T ss_dssp GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH-H---HTTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CGGG
T ss_pred cccchheeeeeccccchhhhhhhhccccHHHHHHHHHH-H---HcCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-cccc
Confidence 6789999999987543221111 111212 1 257899999999998753221 112222221 1222
Q ss_pred CceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 151 RQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
....++++||++|.|++++++++.+.+.++
T Consensus 155 ~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 155 IDKVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp HHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence 334588999999999999999999988764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=4.3e-23 Score=141.29 Aligned_cols=155 Identities=20% Similarity=0.147 Sum_probs=102.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCC----CCChhhh---hhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQ----TSIRPYW---RCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~----~~~~~~~---~~~~~~~~~ 87 (182)
.|+++|++|||||||+|+|.+..... ...|.........+ .+..+.+|||||. .....+. ...+..++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 82 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999866432 34455555555555 5568999999994 2222222 223456888
Q ss_pred EEEEEeCCCcchHH--HHHHHH--HHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccC
Q 030122 88 VIYVVDSSDTDRIQ--TAKEEF--HAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 88 ~i~v~d~~~~~s~~--~~~~~~--~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++++........ ....+. ..........++|+++|+||+|+.+.... +.+.+.+ ....+++.+||++
T Consensus 83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~------~~~~~v~~iSA~~ 156 (185)
T d1lnza2 83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL------TDDYPVFPISAVT 156 (185)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC------CSCCCBCCCSSCC
T ss_pred hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHh------ccCCcEEEEECCC
Confidence 88888766543221 111111 12223334467899999999999853221 2222222 2345689999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030122 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~ 179 (182)
|.|++++++++.+.+.+
T Consensus 157 g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 157 REGLRELLFEVANQLEN 173 (185)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 99999999999998865
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=5e-22 Score=137.05 Aligned_cols=161 Identities=11% Similarity=-0.008 Sum_probs=98.3
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCc-c--ccCCCceeeEEEEeCCEEEEEEECCCCCCCh-------------
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVV-S--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR------------- 75 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~------------- 75 (182)
.|...-.+|+++|.+|||||||+|+|++.+.. . ..++.......... ...+.+.|++|.....
T Consensus 18 ~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 96 (195)
T d1svia_ 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc-cccceEEEEEeeccccccccccchhhhHH
Confidence 34444458999999999999999999986532 2 22222122222222 2334456666532211
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEE
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
..+...+..++++++++|++.+..- ....++..+.. .++|+++|+||+|+......++..+.+..........++
T Consensus 97 ~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (195)
T d1svia_ 97 ETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred hhhhccccchhhhhhhhhccccccc-ccccccccccc----ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCE
Confidence 1223455678999999998765432 11223333322 578999999999987655544443333222223455679
Q ss_pred EEecccCCCCHHHHHHHHHHHHh
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+.+||++|.|+++++++|.+.+.
T Consensus 172 ~~~SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999988774
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.87 E-value=1.9e-21 Score=137.08 Aligned_cols=156 Identities=17% Similarity=0.073 Sum_probs=103.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeE------------------EEEeCCEEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVE------------------TVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~------------------~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
.|+++|.+++|||||+++|++..... ...+...... .+.+....+.++||||+..|...
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~ 86 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL 86 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence 49999999999999999998643211 1111111111 12235668999999999999888
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH------------------HHH
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD------------------AAV 139 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~------------------~~~ 139 (182)
....+..+|++|+|+|+.+.-.-+.. ..+..+.. .++|+++|+||+|+...... .+.
T Consensus 87 ~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 161 (227)
T d1g7sa4 87 RKRGGALADLAILIVDINEGFKPQTQ-EALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (227)
T ss_dssp BCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred chhcccccceEEEEEecccCcccchh-HHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHH
Confidence 77788899999999999875433322 22223322 57899999999998753210 000
Q ss_pred H-------Hhhcc----------cccCCCceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 140 S-------EALEL----------HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 140 ~-------~~~~~----------~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
. ..+.. .......++++.+||.+|.|++++++.+.....+
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~ 218 (227)
T d1g7sa4 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (227)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 0 00000 0001235789999999999999999998876643
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.85 E-value=1.6e-21 Score=134.47 Aligned_cols=157 Identities=13% Similarity=0.026 Sum_probs=103.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc------ccCCCceeeEE--EE---------------------eCCEEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS------TIPTIGFNVET--VQ---------------------YNNIKFQVW 66 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~--~~---------------------~~~~~~~i~ 66 (182)
..++|+++|..++|||||+++|.+..... ..-|....... .. .....+.++
T Consensus 4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (195)
T d1kk1a3 4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence 46899999999999999999998643211 11111111111 10 023568999
Q ss_pred ECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH----HHHh
Q 030122 67 DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA----VSEA 142 (182)
Q Consensus 67 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~----~~~~ 142 (182)
|+||+..|.......+..+|++++|+|+.+....+.....+..+... ...+++++.||+|+.+.....+ +.+.
T Consensus 84 DtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~~ 160 (195)
T d1kk1a3 84 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKEF 160 (195)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHHH
Confidence 99999999888877788999999999988753223333332222221 3356888999999986432211 1121
Q ss_pred hcccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 143 LELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
+. ......++++++||++|+|++++++.+.+.+
T Consensus 161 ~~--~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 161 IE--GTVAENAPIIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp HT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hc--cccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence 11 1222456799999999999999999887754
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.84 E-value=4e-20 Score=128.35 Aligned_cols=160 Identities=11% Similarity=-0.028 Sum_probs=102.7
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc------ccCCCc--eeeEEEEe--------------------------CC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS------TIPTIG--FNVETVQY--------------------------NN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~------~~~t~~--~~~~~~~~--------------------------~~ 60 (182)
..+++|+++|..++|||||+++|++..... ...+.. .....+.. ..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 345899999999999999999998632211 110100 11111000 12
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHH
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS 140 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~ 140 (182)
..+.+.|+||+..|.......+..+|.+|+|+|+.+.-.-......+..+... .-.|+++++||+|+.+........
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~ 162 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 162 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence 36899999999999887788888999999999998753222222222222221 335899999999998643322211
Q ss_pred Hhh--cccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 141 EAL--ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 141 ~~~--~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
... .+.......++++.+||++|.|++++++.+...+
T Consensus 163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i 201 (205)
T d2qn6a3 163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 201 (205)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence 111 1112233457899999999999999999888765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.83 E-value=9.7e-21 Score=130.22 Aligned_cols=157 Identities=15% Similarity=0.044 Sum_probs=107.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC----------------CC-cc--ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG----------------EV-VS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~----------------~~-~~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+++|+++|..++|||||+++|.+. .. .+ +.-|+......+.+.+..+.++|+||+..|...
T Consensus 3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~ 82 (196)
T d1d2ea3 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (196)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence 689999999999999999999751 00 11 222222333445558889999999999999888
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-H----HHHHhhcccccCCCc
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-A----AVSEALELHKIKNRQ 152 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~----~~~~~~~~~~~~~~~ 152 (182)
....+..+|++++|+|+.+.-.-+. ...+..+... ...|+|+++||+|+...... + ++...+....+....
T Consensus 83 ~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 158 (196)
T d1d2ea3 83 MITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (196)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence 8888899999999999987543322 2222333222 34689999999998753222 2 222222222233356
Q ss_pred eEEEEecccCC----------CCHHHHHHHHHHHH
Q 030122 153 WAIFKTCAIKG----------EGLFEGMDWLSNTL 177 (182)
Q Consensus 153 ~~~~~~Sa~~~----------~~i~~~~~~l~~~i 177 (182)
++++.+|+++| .++.++++.+.+.+
T Consensus 159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i 193 (196)
T d1d2ea3 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (196)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence 78999999998 48888888776543
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=9.4e-20 Score=126.18 Aligned_cols=142 Identities=18% Similarity=0.095 Sum_probs=99.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC--------CCc--------c----ccCCCceeeEEEEeCCEEEEEEECCCCCCCh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG--------EVV--------S----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~--------~~~--------~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (182)
.+++|+++|++++|||||+++|+.. ... + +.-|+......+.+.+..+.++||||+..|.
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~ 81 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 81 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence 3689999999999999999999631 010 0 2445555666777899999999999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-H----HHHHhhcccccC
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (182)
......++.+|++|+|+|+.+.-..+....| ..+.. .++| +++++||+|+.+.... + ++...+....+.
T Consensus 82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 156 (204)
T d2c78a3 82 KNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 156 (204)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 8888889999999999999887665544333 22222 4665 7788999998763221 2 223333322334
Q ss_pred CCceEEEEecccC
Q 030122 150 NRQWAIFKTCAIK 162 (182)
Q Consensus 150 ~~~~~~~~~Sa~~ 162 (182)
...++++..|+..
T Consensus 157 ~~~i~~i~~sa~~ 169 (204)
T d2c78a3 157 GDEVPVIRGSALL 169 (204)
T ss_dssp TTTSCEEECCHHH
T ss_pred cccceeeeeechh
Confidence 4556788888753
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=4.6e-19 Score=127.09 Aligned_cols=113 Identities=19% Similarity=0.085 Sum_probs=89.2
Q ss_pred cee-EEEEEecCCCChHHHHHHhhcC--C---------------Cc----cccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 16 THV-LGFSFFIDNFGNLCDTDRLQMG--E---------------VV----STIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 16 ~~~-~i~viG~~~~GKssl~~~l~~~--~---------------~~----~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
.++ +|+++|+.++|||||+.+++.. . +. ++.-|+......+.|++.+++++||||+..
T Consensus 4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d 83 (276)
T d2bv3a2 4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD 83 (276)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS
T ss_pred hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhh
Confidence 345 4999999999999999999741 1 00 134456666778889999999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
|.......++.+|++|+|+|..+.-.-+....| +... ..++|.++++||+|....
T Consensus 84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~----~~~lP~i~fINKmDr~~a 138 (276)
T d2bv3a2 84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAE----KYKVPRIAFANKMDKTGA 138 (276)
T ss_dssp CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHH----TTTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHH----HcCCCEEEEEeccccccc
Confidence 999888888999999999999887665555544 3332 268999999999998753
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.81 E-value=2.2e-18 Score=120.44 Aligned_cols=151 Identities=18% Similarity=0.080 Sum_probs=101.1
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCC--Cc--------------------------------c--ccCCCceeeEE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGE--VV--------------------------------S--TIPTIGFNVET 55 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~--~~--------------------------------~--~~~t~~~~~~~ 55 (182)
......+||+++|..++|||||+.+|+... .. + +..|+......
T Consensus 4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~ 83 (222)
T d1zunb3 4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY 83 (222)
T ss_dssp TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence 344567899999999999999999996311 00 0 11122233334
Q ss_pred EEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCC-eEEEEeeCCCCCCCC
Q 030122 56 VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGA-VALIFANKQDLPGAL 134 (182)
Q Consensus 56 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~i~v~nK~D~~~~~ 134 (182)
+.+.+..+.++|+||+..|..........+|++++|+|+.+.-.-+.... +..+ .. .++ .++++.||+|+.+..
T Consensus 84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~-~~~~-~~---~gv~~iiv~vNK~D~~~~~ 158 (222)
T d1zunb3 84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH-SYIA-SL---LGIKHIVVAINKMDLNGFD 158 (222)
T ss_dssp EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH-HHHH-HH---TTCCEEEEEEECTTTTTSC
T ss_pred EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH-HHHH-HH---cCCCEEEEEEEcccccccc
Confidence 45577899999999999999888888899999999999987543332222 2222 21 454 488899999998643
Q ss_pred CH--H----HHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 135 DD--A----AVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 135 ~~--~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
.. + ++...+....+....++++++||.+|+|+.
T Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 159 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred ceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 22 1 222222222334467889999999999884
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=4.3e-20 Score=128.28 Aligned_cols=119 Identities=22% Similarity=0.188 Sum_probs=86.5
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhC----CCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF----PNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~----~~~~~~i~v~ 92 (182)
+.+|+++|++|||||||+|+|+++.+.+..+ .......+...+..+.+||+||++.++..+..++ ..++.+++++
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~tt-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~v 81 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMV 81 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCeEE-ecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEE
Confidence 4699999999999999999999887754222 2233344445777889999999988766555443 4568899999
Q ss_pred eCCC-cchHHHHHHHHHHHH---hccCCCCCeEEEEeeCCCCCCCCCH
Q 030122 93 DSSD-TDRIQTAKEEFHAIL---EEEELKGAVALIFANKQDLPGALDD 136 (182)
Q Consensus 93 d~~~-~~s~~~~~~~~~~~~---~~~~~~~~p~i~v~nK~D~~~~~~~ 136 (182)
|..+ ..+++....|+..+. ......++|+++|+||+|+......
T Consensus 82 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~ 129 (209)
T d1nrjb_ 82 DSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 129 (209)
T ss_dssp ETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcH
Confidence 9764 556677666664432 2334478999999999999876543
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.5e-18 Score=117.55 Aligned_cols=153 Identities=15% Similarity=0.028 Sum_probs=97.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCcee-eEEEEeCCEEEEEEECCCCCCChh---------hhhhhCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFN-VETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFPNT 85 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~-~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~~~~~~ 85 (182)
.|+++|.+|||||||+|+|++.+... ...|.... ..........+..+|++|...... ........+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV 86 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence 58999999999999999999876543 22233222 233333677788889888643211 112233457
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
++++++.|..+... ....+...+.. ...|.++++||.|..... .++..........-...+++.+||++|.|
T Consensus 87 ~~~l~~~d~~~~~~--~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~--~~~~~~~~~~~~~~~~~~~~~vSA~~g~g 158 (179)
T d1egaa1 87 ELVIFVVEGTRWTP--DDEMVLNKLRE----GKAPVILAVNKVDNVQEK--ADLLPHLQFLASQMNFLDIVPISAETGLN 158 (179)
T ss_dssp EEEEEEEETTCCCH--HHHHHHHHHHS----SSSCEEEEEESTTTCCCH--HHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred ceeEEEEecCccch--hHHHHHHHhhh----ccCceeeeeeeeeccchh--hhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence 78888888765432 22223333332 467899999999987642 22222111111112345799999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++++++.+.+.+
T Consensus 159 i~~L~~~i~~~lpe 172 (179)
T d1egaa1 159 VDTIAAIVRKHLPE 172 (179)
T ss_dssp HHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999887644
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.76 E-value=1.5e-17 Score=118.92 Aligned_cols=108 Identities=13% Similarity=0.045 Sum_probs=85.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCC--C---------------c----cccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE--V---------------V----STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~--~---------------~----~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+|+++|+.++|||||+.+|+... . . .+..|+......+.+++.+++++||||+..|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 49999999999999999996311 0 0 0344555666778889999999999999999988
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
....++.+|++|+|+|+.+.-.-+....| +...+ .++|.++++||+|..
T Consensus 84 ~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 84 IRGALEAADAALVAVSAEAGVQVGTERAW-TVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECGGGC
T ss_pred hhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh----ccccccccccccccc
Confidence 88888999999999999876555544444 33323 579999999999975
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=2.2e-17 Score=112.25 Aligned_cols=163 Identities=10% Similarity=-0.010 Sum_probs=88.8
Q ss_pred ccCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCC-CCCh---h----
Q 030122 9 VTSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQ-TSIR---P---- 76 (182)
Q Consensus 9 ~~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~-~~~~---~---- 76 (182)
.++-|....++|+++|.+|||||||+|+|.+.+... ..++.......... .+......+.++. .... .
T Consensus 8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T d1puia_ 8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR 87 (188)
T ss_dssp GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred hhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhh
Confidence 455667778999999999999999999999876544 22222222222222 3333333333321 1110 0
Q ss_pred ---hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-ccCCCc
Q 030122 77 ---YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-KIKNRQ 152 (182)
Q Consensus 77 ---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-~~~~~~ 152 (182)
...........++.+.+........ ...++..... ...++++++||+|+..........+.+... ......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~ 162 (188)
T d1puia_ 88 ALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 162 (188)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred hhhhhhhhhhheeEEEEeecccccchhH-HHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCC
Confidence 1111223344556666665543322 2333333322 577899999999987643322222111111 112345
Q ss_pred eEEEEecccCCCCHHHHHHHHHHH
Q 030122 153 WAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
.+++.+||++|.|++++++.|.+-
T Consensus 163 ~~~i~vSA~~g~Gid~L~~~i~~~ 186 (188)
T d1puia_ 163 VQVETFSSLKKQGVDKLRQKLDTW 186 (188)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999999988654
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=1.4e-17 Score=117.55 Aligned_cols=150 Identities=13% Similarity=0.076 Sum_probs=102.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcC--C--------------------C------------ccccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMG--E--------------------V------------VSTIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~--~--------------------~------------~~~~~t~~~~~~~~~~~~ 60 (182)
..+++|+++|+.++|||||+.+|+.. . + .++.-|+......+.+.+
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~ 83 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence 34689999999999999999999631 0 0 014556666677888899
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcch---H---HHHHHHHHHHHhccCCCCC-eEEEEeeCCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---I---QTAKEEFHAILEEEELKGA-VALIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-p~i~v~nK~D~~~~ 133 (182)
.++.++|+|||..|...+...+..+|++|+|+|+....- + ......+..... .++ ++++++||+|+.+.
T Consensus 84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW 159 (239)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCCC
Confidence 999999999999999988889999999999999875311 0 012222222211 455 58889999998764
Q ss_pred CCH--H----HHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 134 LDD--A----AVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 134 ~~~--~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
... + ++...+.........++++.+|+..|.|+-+
T Consensus 160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence 321 1 2222222222233457789999999988643
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.72 E-value=6.2e-18 Score=118.65 Aligned_cols=149 Identities=16% Similarity=0.132 Sum_probs=96.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC----------------------------------CccccCCCceeeEEEEeCCEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE----------------------------------VVSTIPTIGFNVETVQYNNIK 62 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~----------------------------------~~~~~~t~~~~~~~~~~~~~~ 62 (182)
+++|+++|+.++|||||+.+|+... ...+..|+......+.+.+..
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~ 82 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 82 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence 6899999999999999999986310 001223333444556668899
Q ss_pred EEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchH------HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-C
Q 030122 63 FQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRI------QTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-D 135 (182)
Q Consensus 63 ~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~ 135 (182)
+.++|+||+..|........+-+|++|+|+|+.+...- ......+... .. ....++++++||+|+.... .
T Consensus 83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~--~~~~~iIv~iNK~D~~~~~~~ 159 (224)
T d1jnya3 83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KT--MGLDQLIVAVNKMDLTEPPYD 159 (224)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HH--TTCTTCEEEEECGGGSSSTTC
T ss_pred eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HH--hCCCceEEEEEcccCCCcccc
Confidence 99999999999999988899999999999999874211 1111111111 11 1345688999999987532 2
Q ss_pred H---HH----HHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 136 D---AA----VSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 136 ~---~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
. +. +...+.........++++.+||..|.|+.+
T Consensus 160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 1 11 122222223344567899999999998753
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.69 E-value=1.9e-16 Score=112.23 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=87.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCC--C------------------------------cc--ccCCCceeeEEEEeC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGE--V------------------------------VS--TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~--~------------------------------~~--~~~t~~~~~~~~~~~ 59 (182)
...+++|+++|+.++|||||+.+|+... . .+ +..++......+.+.
T Consensus 21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~ 100 (245)
T d1r5ba3 21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 100 (245)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence 3457789999999999999999995311 0 00 222333333455567
Q ss_pred CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcch---H---HHHHHHHHHHHhccCCCCC-eEEEEeeCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---I---QTAKEEFHAILEEEELKGA-VALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-p~i~v~nK~D~~~ 132 (182)
..++.+.|+||+..|..........+|++++|+|+.+..- + ......+..+ .. .++ ++++++||+|+..
T Consensus 101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~-~~---~~i~~iiv~iNKmD~~~ 176 (245)
T d1r5ba3 101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVINKMDEPS 176 (245)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEEECTTSTT
T ss_pred cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHH-HH---cCCCeEEEEEEcCCCCc
Confidence 7899999999999999888888899999999999976310 0 0112222112 11 344 4789999999975
Q ss_pred CCC----HHHHHHhhccc-----cc-CCCceEEEEecccCCCCHHHHH
Q 030122 133 ALD----DAAVSEALELH-----KI-KNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 133 ~~~----~~~~~~~~~~~-----~~-~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
... .+++.+.+... .. ....++++++||++|+|+.+++
T Consensus 177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~ 224 (245)
T d1r5ba3 177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 224 (245)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence 322 12332222111 11 1235789999999999998753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=3.3e-15 Score=112.79 Aligned_cols=155 Identities=14% Similarity=0.003 Sum_probs=89.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-----eeeEEEEe-CCEEEEEEECCCCCCChh-----hhhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-----FNVETVQY-NNIKFQVWDLGGQTSIRP-----YWRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-----~~~~~~~~-~~~~~~i~d~~g~~~~~~-----~~~~~~~ 83 (182)
..++|+++|.+|+|||||+|.|.+....+ .....+ .....+.. ....+.+|||||-..... +....+.
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~ 134 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 134 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence 35899999999999999999999854322 111111 11122223 344588999999643221 2223345
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC---------CCCHHH----H----HHhhccc
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG---------ALDDAA----V----SEALELH 146 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~---------~~~~~~----~----~~~~~~~ 146 (182)
.+|.++++.|..-.+. -...+..+.. .++|+++|.||+|... ....+. + ...+...
T Consensus 135 ~~d~~l~~~~~~~~~~---d~~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~ 207 (400)
T d1tq4a_ 135 EYDFFIIISATRFKKN---DIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 207 (400)
T ss_dssp GCSEEEEEESSCCCHH---HHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cceEEEEecCCCCCHH---HHHHHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence 6888888876433221 1222333332 4789999999999531 011111 1 1112111
Q ss_pred ccCCCceEEEEecccC--CCCHHHHHHHHHHHHhc
Q 030122 147 KIKNRQWAIFKTCAIK--GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 147 ~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~~~i~~ 179 (182)
. ...-++|.+|..+ ..++.++.+.+.+.+.+
T Consensus 208 ~--~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 208 G--IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp T--CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred C--CCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence 1 1233477788764 34899998888876643
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=4.6e-14 Score=103.82 Aligned_cols=110 Identities=19% Similarity=0.113 Sum_probs=79.7
Q ss_pred eeE-EEEEecCCCChHHHHHHhhc--CCCc---------------c--ccCCCceeeEEEEe----------------CC
Q 030122 17 HVL-GFSFFIDNFGNLCDTDRLQM--GEVV---------------S--TIPTIGFNVETVQY----------------NN 60 (182)
Q Consensus 17 ~~~-i~viG~~~~GKssl~~~l~~--~~~~---------------~--~~~t~~~~~~~~~~----------------~~ 60 (182)
.+| |+++|+.++|||||+.+|+. +... + +.-|+......+.+ +.
T Consensus 16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 95 (341)
T d1n0ua2 16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 95 (341)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence 465 99999999999999999972 1110 0 22233322233322 34
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
+.++++||||+..|.......++-+|++++|+|+.+.-..+...-|-. ... .++|.++++||+|..
T Consensus 96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~-a~~----~~~p~i~viNKiDr~ 161 (341)
T d1n0ua2 96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRA 161 (341)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHH
T ss_pred eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHH-HHH----cCCCeEEEEECcccc
Confidence 679999999999999988888899999999999998766555444433 222 578999999999974
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.51 E-value=1.1e-13 Score=98.56 Aligned_cols=117 Identities=8% Similarity=-0.002 Sum_probs=77.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCC----h---hhhhh--
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSI----R---PYWRC-- 80 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~----~---~~~~~-- 80 (182)
....++|+++|.+|+|||||+|.+++..... ...|...........+..+.++||||-... . .....
T Consensus 29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~ 108 (257)
T d1h65a_ 29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 108 (257)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence 3457899999999999999999999877543 233334556666778899999999995321 1 11111
Q ss_pred hCCCCCEEEEEEeCCCcc-h--HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 81 YFPNTEAVIYVVDSSDTD-R--IQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~-s--~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.....++++||++++... + -.....++..++... .-.++++|+||+|...
T Consensus 109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP 161 (257)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence 123568899998876531 1 223334444443221 2357899999999875
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.44 E-value=2.9e-14 Score=100.52 Aligned_cols=114 Identities=16% Similarity=0.037 Sum_probs=66.5
Q ss_pred EEEEEEECCCCCCChhhhhh---h--CCCCCEEEEEEeCCCc---chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRC---Y--FPNTEAVIYVVDSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~---~--~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
..+.+.|+||+..+...... . ....+.+++++|.... ..+............ ....|.++++||+|+..
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~---~~~~~~ivvinK~D~~~ 171 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLLS 171 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGCC
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH---HhCCCceeeeecccccc
Confidence 45889999998654321111 1 2246789999997543 222222211111111 14789999999999986
Q ss_pred CCCHHHHH----------Hhhccc---------------ccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 133 ALDDAAVS----------EALELH---------------KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 133 ~~~~~~~~----------~~~~~~---------------~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
......+. ...... ......++++.+||++|+|+++++..|.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~ 241 (244)
T d1yrba1 172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 241 (244)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 43221111 000000 0012346799999999999999999987753
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=2.9e-13 Score=99.15 Aligned_cols=151 Identities=16% Similarity=0.062 Sum_probs=86.0
Q ss_pred cceeEEEEEecCCCChHHHHHHhhc------CCCcc--ccCCCc---------------------eeeEEEEe-------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQM------GEVVS--TIPTIG---------------------FNVETVQY------- 58 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~------~~~~~--~~~t~~---------------------~~~~~~~~------- 58 (182)
.+.++|.+.|+||||||||+++|.. .+..- ..|+.. ........
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence 4568999999999999999999973 11100 111111 11111100
Q ss_pred -------------CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEe
Q 030122 59 -------------NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFA 125 (182)
Q Consensus 59 -------------~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~ 125 (182)
.+..+.+++|.|.-.-. ..+...+|.+++|.++...+..+....- +++. +=++|+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~g---i~e~------aDi~Vv 199 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKG---LMEV------ADLIVI 199 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHH---HHHH------CSEEEE
T ss_pred hhhhhHHHHHHHhcCCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchh---hhcc------ccEEEE
Confidence 12356666666633221 1234568999999976655444433332 3222 338999
Q ss_pred eCCCCCCCCCHH----HHHHhhcc--cccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 126 NKQDLPGALDDA----AVSEALEL--HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 126 nK~D~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
||+|........ +....+.. .....+..+++.|||.+|+|++++++.|.+..
T Consensus 200 NKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred EeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence 999988643221 22222211 22234567899999999999999999987643
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.36 E-value=9e-13 Score=96.44 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=90.6
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcC----CC-------ccccC--------------CCc----eeeEEE---------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMG----EV-------VSTIP--------------TIG----FNVETV--------- 56 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~----~~-------~~~~~--------------t~~----~~~~~~--------- 56 (182)
.+-++|.+.|+||+|||||+++|... .. .+..+ ... ......
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence 34579999999999999999999851 00 00000 000 111110
Q ss_pred -----------EeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEe
Q 030122 57 -----------QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFA 125 (182)
Q Consensus 57 -----------~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~ 125 (182)
...++.+.+++|.|.-.-.... ..-+|..++|..+...+..+.... .++ .++=++|+
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~---~~~~D~~v~v~~p~~GD~iQ~~k~---gil------E~aDi~vv 196 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQSETAV---ADLTDFFLVLMLPGAGDELQGIKK---GIF------ELADMIAV 196 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH---HTTSSEEEEEECSCC------CCT---THH------HHCSEEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhhhhhh---hcccceEEEEeeccchhhhhhhhh---hHh------hhhheeeE
Confidence 0034678888888855443333 345999999998887655443222 121 23449999
Q ss_pred eCCCCCCCCCHH-HH----HHhhccc--ccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 126 NKQDLPGALDDA-AV----SEALELH--KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 126 nK~D~~~~~~~~-~~----~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
||+|+.+..... .. ...+... ....+..+++.+||++|.|++++++++.+..
T Consensus 197 NKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~ 255 (323)
T d2qm8a1 197 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 255 (323)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 999988654321 12 1222111 2234567899999999999999999997654
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.08 E-value=4.4e-10 Score=81.24 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=59.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCC---cc-ccCCCceeeEEEEeC-----------------CEEEEEEECCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEV---VS-TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~---~~-~~~t~~~~~~~~~~~-----------------~~~~~i~d~~g~~ 72 (182)
+...+||.++|.|+||||||++.+++... .. ...|+..+...+.+. ...+.+.|+||.-
T Consensus 7 ~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv 86 (296)
T d1ni3a1 7 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 86 (296)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence 44668999999999999999999997643 22 455555555555542 3578999999843
Q ss_pred CC-------hhhhhhhCCCCCEEEEEEeCCC
Q 030122 73 SI-------RPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 73 ~~-------~~~~~~~~~~~~~~i~v~d~~~ 96 (182)
.- -......++++|++++|+|+.+
T Consensus 87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccccHHHHHHHhhccceeEEEEeccC
Confidence 21 1234455789999999999754
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.07 E-value=1.7e-10 Score=84.22 Aligned_cols=79 Identities=19% Similarity=0.053 Sum_probs=45.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEE------------------------eCCEEEEEEECCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQ------------------------YNNIKFQVWDLGG 70 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~------------------------~~~~~~~i~d~~g 70 (182)
++|+++|.||||||||+|.|.+..... .+.|+..+..... +....++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 489999999999999999999765332 2333332222111 1225799999999
Q ss_pred CCCC-------hhhhhhhCCCCCEEEEEEeCCC
Q 030122 71 QTSI-------RPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 71 ~~~~-------~~~~~~~~~~~~~~i~v~d~~~ 96 (182)
--.. .......++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 5321 1122334568999999999753
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.05 E-value=2.8e-10 Score=81.59 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=55.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeC-----------------CEEEEEEECCCCCCChh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~i~d~~g~~~~~~ 76 (182)
.+||.++|.|+||||||++++.+..... ...|+..+...+.+. ...+.++|+||.-.-..
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 4799999999999999999999776433 344555555555442 13588999999654332
Q ss_pred -------hhhhhCCCCCEEEEEEeC
Q 030122 77 -------YWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 77 -------~~~~~~~~~~~~i~v~d~ 94 (182)
.....++++|++++|+|+
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~ 106 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRC 106 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred cCCCccHHHHHHHHhccceEEEeec
Confidence 233456789999999986
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=4.4e-09 Score=75.86 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=72.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCc-eeeEE-------------------------------------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIG-FNVET------------------------------------- 55 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~-~~~~~------------------------------------- 55 (182)
...+|+|+|..++|||||+|.|++.++.+ ..++.. +..-.
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 34589999999999999999999988644 333332 11100
Q ss_pred ------------EEe---CCEEEEEEECCCCCCC-------------hhhhhhhCCCCCEE-EEEEeCCCcchHHHHHHH
Q 030122 56 ------------VQY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPNTEAV-IYVVDSSDTDRIQTAKEE 106 (182)
Q Consensus 56 ------------~~~---~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~~~-i~v~d~~~~~s~~~~~~~ 106 (182)
+.. ....+.++|+||-... ..+...|+..++.+ ++|.+....-+-.....+
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~ 184 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence 000 1234889999995321 13455677777754 556666555444454555
Q ss_pred HHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 107 FHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 107 ~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+.+ .....++++|+||+|..+.
T Consensus 185 ~~~~----~~~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 185 AKEV----DPQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHH----CTTCSSEEEEEECGGGSCT
T ss_pred HHHh----CcCCCceeeEEeccccccc
Confidence 4443 2245789999999998764
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.91 E-value=5.4e-09 Score=75.64 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=67.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCc----eeeE------------------------------------
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIG----FNVE------------------------------------ 54 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~----~~~~------------------------------------ 54 (182)
-.+|+|+|..++|||||+|.|++.++.+ ..++.. +.+.
T Consensus 24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (306)
T d1jwyb_ 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (306)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence 4589999999999999999999977533 222111 1000
Q ss_pred ------------------E--EEe-CCEEEEEEECCCCCCC-------------hhhhhhhCCCCCEEEEEE-eCCCcch
Q 030122 55 ------------------T--VQY-NNIKFQVWDLGGQTSI-------------RPYWRCYFPNTEAVIYVV-DSSDTDR 99 (182)
Q Consensus 55 ------------------~--~~~-~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~s 99 (182)
. +.. ....+.++|+||-... ..+...|+.+++.+++++ +......
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~ 183 (306)
T d1jwyb_ 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (306)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence 0 001 1236889999995321 235666888899876665 4332222
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 100 IQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
-.....+.+.+ ......+++|+||+|....
T Consensus 184 ~~~~~~~~~~~----~~~~~r~i~Vitk~D~~~~ 213 (306)
T d1jwyb_ 184 NSDALQLAKEV----DPEGKRTIGVITKLDLMDK 213 (306)
T ss_dssp TCSHHHHHHHH----CSSCSSEEEEEECTTSSCS
T ss_pred ccHHHHHHHHh----CcCCCeEEEEEeccccccc
Confidence 22233333333 2245689999999998753
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.71 E-value=5.1e-09 Score=74.64 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=37.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~ 71 (182)
.....++|+|+|.||||||||+|+|.+.......++-|.......+ .+-.+.+.||||-
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi 167 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGI 167 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCC
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCCCeEEecCCCc
Confidence 3456789999999999999999999987765533333322221111 2346899999995
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.30 E-value=3.6e-07 Score=64.86 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=62.5
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEE
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
....++.+|++++|+|+.++-+..+ ..+..++ .++|.++|+||+|+.+....+.+.+.+.. .....+.
T Consensus 9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~-----~~~~~i~ 76 (273)
T d1puja_ 9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFEN-----QGIRSLS 76 (273)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHT-----TTCCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHh-----cCCccce
Confidence 3456788999999999988765432 1222332 36799999999999865444455544432 2334889
Q ss_pred ecccCCCCHHHHHHHHHHHHh
Q 030122 158 TCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+|+.++.+..++.+.+.+.+.
T Consensus 77 isa~~~~~~~~~~~~~~~~l~ 97 (273)
T d1puja_ 77 INSVNGQGLNQIVPASKEILQ 97 (273)
T ss_dssp CCTTTCTTGGGHHHHHHHHHH
T ss_pred eecccCCCccccchhhhhhhh
Confidence 999999999988877766544
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.27 E-value=9.3e-07 Score=60.53 Aligned_cols=86 Identities=26% Similarity=0.220 Sum_probs=58.1
Q ss_pred hCCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEec
Q 030122 81 YFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
...+.|.+++|+.+.+|+ +...+.+++..... .++|.++|+||+|+.++...+.+..... .....++++.+|
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~---~~~~~~~v~~vS 79 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEE---IYSGLYPIVKTS 79 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH---HHTTTSCEEECC
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhc---ccccceeEEEec
Confidence 356789999999987764 34555554444322 6899999999999986432222322221 112235699999
Q ss_pred ccCCCCHHHHHHHH
Q 030122 160 AIKGEGLFEGMDWL 173 (182)
Q Consensus 160 a~~~~~i~~~~~~l 173 (182)
++++.|++++.+++
T Consensus 80 a~~~~g~~~L~~~l 93 (225)
T d1u0la2 80 AKTGMGIEELKEYL 93 (225)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred cccchhHhhHHHHh
Confidence 99999999987766
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.20 E-value=2.7e-07 Score=63.24 Aligned_cols=56 Identities=9% Similarity=0.071 Sum_probs=33.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc------eeeEEEEeCCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG------FNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~------~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (182)
..+|+|++|+|||||+|+|.+..... .....+ .....+.... .-.++||||-..+.
T Consensus 97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~-gg~iiDTPG~r~~~ 161 (225)
T d1u0la2 97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF-GGYVVDTPGFANLE 161 (225)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT-SCEEESSCSSTTCC
T ss_pred eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC-CcEEEeCCcccccc
Confidence 67999999999999999998754322 111111 1111222211 24788999976553
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.15 E-value=2.4e-06 Score=57.82 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=45.7
Q ss_pred CEEEEEEECCCCCCChhh-------hhhh-----CCCCCEEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCCeEEEEee
Q 030122 60 NIKFQVWDLGGQTSIRPY-------WRCY-----FPNTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~-------~~~~-----~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i~v~n 126 (182)
+..+.++||+|...+... .... ....+-.++|+|.+.. +....+...+..+ . +--+++|
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~-------~~~lI~T 159 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-G-------LTGVIVT 159 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-C-------CSEEEEE
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-C-------CceEEEe
Confidence 467899999996554321 1111 1245778999998654 4455555554444 1 2257889
Q ss_pred CCCCCCCCC-HHHHHHhhccc
Q 030122 127 KQDLPGALD-DAAVSEALELH 146 (182)
Q Consensus 127 K~D~~~~~~-~~~~~~~~~~~ 146 (182)
|.|....-. .-.+....+++
T Consensus 160 KlDet~~~G~~l~~~~~~~~P 180 (207)
T d1okkd2 160 KLDGTAKGGVLIPIVRTLKVP 180 (207)
T ss_dssp CTTSSCCCTTHHHHHHHHCCC
T ss_pred ccCCCCCccHHHHHHHHHCCC
Confidence 999764322 23444444333
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.07 E-value=1.2e-06 Score=59.41 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=38.5
Q ss_pred CCEEEEEEECCCCCCChhhh----hhh--CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 59 NNIKFQVWDLGGQTSIRPYW----RCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.+..+.++||+|........ ..+ ..+.+-.++|.|.+....-......+...+. +--++++|.|...
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~-------~~~~I~TKlDe~~ 163 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------VTGLVLTKLDGDA 163 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC-------CCEEEEECGGGCS
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC-------CCeeEEeecCccc
Confidence 34578999999976543311 111 2256889999998665432222222222211 2247889999754
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=2e-05 Score=53.85 Aligned_cols=22 Identities=5% Similarity=-0.194 Sum_probs=18.9
Q ss_pred EEEEecCCCChHHHHHHhhcCC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~ 41 (182)
+++-|.-|||||||+++++...
T Consensus 6 ~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEeeCCCCCHHHHHHHHHhcC
Confidence 6777889999999999998753
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.04 E-value=1.1e-06 Score=57.95 Aligned_cols=22 Identities=5% Similarity=-0.179 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
+||+++|++|||||||++.+++
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 4899999999999999999986
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.02 E-value=7.2e-07 Score=61.30 Aligned_cols=23 Identities=4% Similarity=-0.211 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
..+++|++|+|||||+|+|.+..
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred eEEEECCCCccHHHHHHhhccHh
Confidence 57899999999999999999754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.98 E-value=2e-06 Score=57.52 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=22.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhc
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+.+.+||+++|+|||||||+...|..
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999984
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.97 E-value=1.4e-06 Score=57.48 Aligned_cols=22 Identities=9% Similarity=-0.118 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-+|+|.|++|||||||+++|..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999985
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.96 E-value=1.7e-06 Score=56.43 Aligned_cols=23 Identities=9% Similarity=-0.224 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
..+|++.|+|||||||+++.|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.91 E-value=2.5e-06 Score=56.86 Aligned_cols=23 Identities=4% Similarity=-0.148 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+++|+++|+|||||||+++.|..
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998874
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.91 E-value=5.4e-06 Score=56.22 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=37.7
Q ss_pred CCEEEEEEECCCCCCChh--h----hhhh--CCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q 030122 59 NNIKFQVWDLGGQTSIRP--Y----WRCY--FPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~--~----~~~~--~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
.+..+.++||+|...+.. . ...+ ....+-.++|+|++... ..+.+...+.. .++ --+++||.|
T Consensus 93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~-------~~~-~~lI~TKlD 164 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA-------SKI-GTIIITKMD 164 (211)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH-------CTT-EEEEEECTT
T ss_pred cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc-------cCc-ceEEEeccc
Confidence 446899999999644321 1 1111 12457788999876543 34433333222 222 246799999
Q ss_pred CCC
Q 030122 130 LPG 132 (182)
Q Consensus 130 ~~~ 132 (182)
...
T Consensus 165 et~ 167 (211)
T d1j8yf2 165 GTA 167 (211)
T ss_dssp SCS
T ss_pred CCC
Confidence 864
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.91 E-value=6.6e-07 Score=61.48 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=57.6
Q ss_pred CCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecc
Q 030122 82 FPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
..+.|.+++|+++.+|+ +...+.+++-... ..+++.++|+||+|+.++...++....+. ......+++++.+|+
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~-~~y~~~g~~v~~~Sa 82 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYA-EDYRNIGYDVYLTSS 82 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHH-HHHHHHTCCEEECCH
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHH----HcCCCEEEEEecccccccHHHHHHHHHHH-HHHhhccccceeeec
Confidence 46889999999987764 3555555544432 26899999999999986533322221111 111223456999999
Q ss_pred cCCCCHHHHHHHH
Q 030122 161 IKGEGLFEGMDWL 173 (182)
Q Consensus 161 ~~~~~i~~~~~~l 173 (182)
++++|++++.+++
T Consensus 83 ~~~~gl~~L~~~l 95 (231)
T d1t9ha2 83 KDQDSLADIIPHF 95 (231)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CChhHHHHHHHhh
Confidence 9999998876654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.89 E-value=3e-06 Score=55.94 Aligned_cols=22 Identities=5% Similarity=-0.016 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
+||+++|+|||||||+++.|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.88 E-value=4e-06 Score=54.76 Aligned_cols=24 Identities=4% Similarity=-0.126 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+.++|++.|++||||||+.+.|..
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 347999999999999999999974
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.86 E-value=4.1e-06 Score=55.82 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.+||+++|+|||||||++..|..
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999999873
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.85 E-value=4e-06 Score=55.48 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
++|+++|+|||||||+++.|..
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998884
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=4.1e-06 Score=55.37 Aligned_cols=22 Identities=9% Similarity=-0.100 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
++|+++|+|||||||+++.|..
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999874
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=2.6e-05 Score=55.11 Aligned_cols=55 Identities=15% Similarity=-0.033 Sum_probs=40.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCC--cc----ccCCCceeeEEEEe---CCEEEEEEECCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEV--VS----TIPTIGFNVETVQY---NNIKFQVWDLGGQT 72 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~--~~----~~~t~~~~~~~~~~---~~~~~~i~d~~g~~ 72 (182)
.-|.++|+.++|||+|+|+|++... .. ...|.|+-.....+ .+..+.++||.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~ 96 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 96 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence 3589999999999999999997653 11 34566755444433 56789999999954
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=4.9e-06 Score=54.86 Aligned_cols=22 Identities=5% Similarity=-0.207 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
+||+++|+|||||||.++.|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998864
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.81 E-value=6.7e-06 Score=54.89 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|+|||||||++++|..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999974
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.80 E-value=5.2e-06 Score=54.89 Aligned_cols=22 Identities=14% Similarity=-0.084 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
+||+|+|+|||||||+.+.|..
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=5.2e-06 Score=53.93 Aligned_cols=21 Identities=14% Similarity=-0.156 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|+|.|++|||||||++++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999984
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.76 E-value=6.6e-06 Score=52.55 Aligned_cols=20 Identities=5% Similarity=-0.158 Sum_probs=18.2
Q ss_pred EEEEecCCCChHHHHHHhhc
Q 030122 20 GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~ 39 (182)
|++.|+|||||||++++|..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=1.1e-05 Score=53.74 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
+.|+++|+|||||||.+..|..
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998874
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.68 E-value=9.7e-06 Score=52.63 Aligned_cols=21 Identities=19% Similarity=0.034 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|++.|++||||||++++|..
T Consensus 4 lI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.67 E-value=9e-06 Score=52.91 Aligned_cols=22 Identities=14% Similarity=-0.059 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.+|+++|++||||||+.+.+..
T Consensus 2 p~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988863
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.65 E-value=1.9e-05 Score=52.66 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...|+++|+|||||||+...|..
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999999975
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=1.2e-05 Score=51.69 Aligned_cols=21 Identities=14% Similarity=-0.176 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998874
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.64 E-value=2.1e-05 Score=51.55 Aligned_cols=23 Identities=4% Similarity=-0.155 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
..-|+++|+|||||||+++++..
T Consensus 14 p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.54 E-value=1.9e-05 Score=51.17 Aligned_cols=21 Identities=10% Similarity=-0.249 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|++||||||+.+.|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.51 E-value=2.4e-05 Score=50.77 Aligned_cols=20 Identities=5% Similarity=-0.180 Sum_probs=18.0
Q ss_pred EEEEecCCCChHHHHHHhhc
Q 030122 20 GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~ 39 (182)
|.|+|.+|||||||+++|..
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999973
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.49 E-value=3e-05 Score=52.03 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-|+++|.|||||||+.++|..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.48 E-value=2.8e-05 Score=51.81 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|+++|+|||||||++.+|..
T Consensus 10 iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999975
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.48 E-value=3.2e-05 Score=50.30 Aligned_cols=21 Identities=10% Similarity=-0.265 Sum_probs=18.7
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|++.|++||||||+.+.|...
T Consensus 7 I~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999988753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.45 E-value=3.1e-05 Score=51.37 Aligned_cols=21 Identities=10% Similarity=-0.243 Sum_probs=19.3
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|+|+||+|||||||+++|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999754
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.45 E-value=3e-05 Score=50.83 Aligned_cols=21 Identities=5% Similarity=-0.088 Sum_probs=18.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|++.|++||||||+++.|..
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378889999999999998853
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=3.2e-05 Score=50.13 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-+++.|++||||||+.+.|..
T Consensus 8 iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999999875
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=3.1e-05 Score=50.58 Aligned_cols=21 Identities=10% Similarity=-0.146 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++|+|||||+.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999885
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.43 E-value=5.4e-05 Score=49.22 Aligned_cols=22 Identities=23% Similarity=-0.085 Sum_probs=19.4
Q ss_pred eeEEEEEecCCCChHHHHHHhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~ 38 (182)
-.-|.+.|.+||||||+.+.|.
T Consensus 6 g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 6 GFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999998886
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.42 E-value=3.6e-05 Score=50.74 Aligned_cols=22 Identities=9% Similarity=-0.177 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-|+++||+||||||+++.|...
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999998753
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.41 E-value=6.5e-05 Score=49.66 Aligned_cols=27 Identities=7% Similarity=-0.097 Sum_probs=22.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhc
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.+..++-|++-|++|||||||+++|..
T Consensus 18 ~~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 18 KTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344567799999999999999999874
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.40 E-value=4e-05 Score=49.95 Aligned_cols=21 Identities=14% Similarity=-0.108 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+++|++||||||+.+.|..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999863
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.38 E-value=4.8e-05 Score=50.01 Aligned_cols=21 Identities=10% Similarity=-0.091 Sum_probs=17.5
Q ss_pred EE-EEEecCCCChHHHHHHhhc
Q 030122 19 LG-FSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i-~viG~~~~GKssl~~~l~~ 39 (182)
|| +|.|.+||||||+++.|..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 55 5679999999999998863
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.36 E-value=4.6e-05 Score=50.66 Aligned_cols=20 Identities=10% Similarity=-0.233 Sum_probs=18.5
Q ss_pred EEEEecCCCChHHHHHHhhc
Q 030122 20 GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~ 39 (182)
|+++||+|||||||+++|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=5.1e-05 Score=52.40 Aligned_cols=22 Identities=14% Similarity=-0.283 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+|+++|+.|||||||++-+.+-
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999988763
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=5.1e-05 Score=49.97 Aligned_cols=21 Identities=10% Similarity=-0.115 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|+++||+||||+||+++|+..
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999853
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.34 E-value=7.5e-05 Score=51.99 Aligned_cols=23 Identities=4% Similarity=-0.324 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-|++.|+||+||||+++.+.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999864
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.31 E-value=5.8e-05 Score=48.95 Aligned_cols=21 Identities=14% Similarity=-0.319 Sum_probs=17.7
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|++.|++||||||+.+.|...
T Consensus 6 I~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 555599999999999998853
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.29 E-value=6.8e-05 Score=52.15 Aligned_cols=21 Identities=5% Similarity=-0.273 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+++++|+.|||||||++-+.+
T Consensus 43 ~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 799999999999999998875
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.28 E-value=7.6e-05 Score=50.54 Aligned_cols=24 Identities=4% Similarity=-0.274 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+.++|++-||+||||||....|..
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357888999999999999999885
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.27 E-value=7.3e-05 Score=51.65 Aligned_cols=21 Identities=10% Similarity=-0.315 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+++++|+.|||||||++-+.+
T Consensus 30 ~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998875
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=7.4e-05 Score=50.33 Aligned_cols=22 Identities=14% Similarity=-0.120 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-|+++||+|||||||+++|+..
T Consensus 4 livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999853
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.24 E-value=7.6e-05 Score=50.07 Aligned_cols=22 Identities=5% Similarity=-0.189 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+++.
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcc
Confidence 5889999999999999998754
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.24 E-value=7.6e-05 Score=51.08 Aligned_cols=22 Identities=5% Similarity=-0.257 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCcchhhHhccCC
Confidence 6899999999999999977653
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=8.2e-05 Score=50.96 Aligned_cols=22 Identities=5% Similarity=-0.290 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999988763
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=8.6e-05 Score=51.56 Aligned_cols=22 Identities=14% Similarity=-0.171 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+++++|+.|||||||++-+.+-
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 7999999999999999988753
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.21 E-value=8.8e-05 Score=51.00 Aligned_cols=22 Identities=5% Similarity=-0.256 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4679999999999999998864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.20 E-value=9.9e-05 Score=52.10 Aligned_cols=22 Identities=5% Similarity=-0.371 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6999999999999999998863
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=4.8e-05 Score=50.28 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=19.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...|.+.|++||||||+.+.|..
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999863
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.17 E-value=0.00015 Score=52.27 Aligned_cols=22 Identities=5% Similarity=-0.331 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+|+|.|++||||||+++.++..
T Consensus 168 nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEeeccccchHHHHHHhhh
Confidence 5999999999999999999853
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.15 E-value=0.00011 Score=50.53 Aligned_cols=23 Identities=9% Similarity=-0.135 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999888643
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00011 Score=50.48 Aligned_cols=22 Identities=5% Similarity=-0.227 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999988764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.12 E-value=0.00011 Score=50.40 Aligned_cols=21 Identities=5% Similarity=-0.192 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++|.||||+||||+++.+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHh
Confidence 589999999999999998874
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.11 E-value=0.00011 Score=50.38 Aligned_cols=22 Identities=9% Similarity=-0.081 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..+++.||||+||||+++.+.+
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.10 E-value=0.00013 Score=50.22 Aligned_cols=23 Identities=9% Similarity=-0.109 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999887643
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.08 E-value=9.6e-05 Score=51.39 Aligned_cols=21 Identities=5% Similarity=-0.243 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+++++|+.|||||||++-+.+
T Consensus 46 ~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 899999999999999987765
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.07 E-value=0.00014 Score=50.15 Aligned_cols=23 Identities=4% Similarity=-0.178 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-++++|+.|||||||++.+.+-.
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999988643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.06 E-value=0.00029 Score=47.51 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=62.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcC----CCcc------------------ccCCCceeeEEEE-------------
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMG----EVVS------------------TIPTIGFNVETVQ------------- 57 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~----~~~~------------------~~~t~~~~~~~~~------------- 57 (182)
++..+.-|+++|++||||||.+-+|... .... +...+++......
T Consensus 7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~ 86 (213)
T d1vmaa2 7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 86 (213)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHH
Confidence 4455668999999999999987777631 1000 0001111111000
Q ss_pred ----eCCEEEEEEECCCCCCChhhh----hhh---CC-----CCCEEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCCe
Q 030122 58 ----YNNIKFQVWDLGGQTSIRPYW----RCY---FP-----NTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAV 120 (182)
Q Consensus 58 ----~~~~~~~i~d~~g~~~~~~~~----~~~---~~-----~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p 120 (182)
..++.+.++||+|...+.... ..+ .. ..+-.++|+|.+.. +.+..+...+..+ -+
T Consensus 87 ~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~ 158 (213)
T d1vmaa2 87 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV--------NV 158 (213)
T ss_dssp HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS--------CC
T ss_pred HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc--------CC
Confidence 035678999999965543311 111 11 24678899987643 3344444433322 24
Q ss_pred EEEEeeCCCCCC
Q 030122 121 ALIFANKQDLPG 132 (182)
Q Consensus 121 ~i~v~nK~D~~~ 132 (182)
--++++|.|...
T Consensus 159 ~~lI~TKlDe~~ 170 (213)
T d1vmaa2 159 TGIILTKLDGTA 170 (213)
T ss_dssp CEEEEECGGGCS
T ss_pred ceEEEecccCCC
Confidence 467889999764
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.04 E-value=9.4e-05 Score=50.53 Aligned_cols=23 Identities=4% Similarity=-0.301 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-++++|+.|||||||++-+.+-.
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 58999999999999999988643
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00011 Score=50.45 Aligned_cols=22 Identities=9% Similarity=-0.174 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999873
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.01 E-value=0.00024 Score=47.04 Aligned_cols=26 Identities=4% Similarity=-0.240 Sum_probs=22.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhc
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
..+++-|++-|..||||||+++.|..
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44557899999999999999999874
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00017 Score=48.65 Aligned_cols=21 Identities=5% Similarity=-0.344 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|++.|||||||+|+...|..
T Consensus 5 iI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577789999999999999885
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.00023 Score=47.26 Aligned_cols=23 Identities=9% Similarity=-0.113 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+-+++++|+||+|||++++.|..
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHH
Confidence 34799999999999999988874
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.99 E-value=0.00017 Score=49.92 Aligned_cols=22 Identities=9% Similarity=-0.147 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|++.||||+|||++++.+.+
T Consensus 41 ~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 3599999999999999999974
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.00018 Score=49.45 Aligned_cols=23 Identities=4% Similarity=-0.276 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-++++|+.|||||||++.+.+-.
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999888654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.00025 Score=47.62 Aligned_cols=23 Identities=9% Similarity=-0.266 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
++-|++-|++|||||||.+.|..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998854
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.95 E-value=0.00018 Score=51.42 Aligned_cols=22 Identities=14% Similarity=-0.162 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|++.||||||||.|.+.+...
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999998753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.95 E-value=0.00027 Score=48.68 Aligned_cols=25 Identities=4% Similarity=-0.053 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~ 41 (182)
...+++.||||+||||+++.+.+..
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999998643
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=96.94 E-value=0.00021 Score=49.73 Aligned_cols=22 Identities=5% Similarity=-0.269 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999988754
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.92 E-value=0.00023 Score=49.46 Aligned_cols=22 Identities=5% Similarity=-0.173 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-++++|+.|||||||++.+.+.
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHCC
Confidence 5799999999999999999875
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.87 E-value=0.00013 Score=50.20 Aligned_cols=23 Identities=4% Similarity=-0.379 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCc
Confidence 68999999999999999888643
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.87 E-value=0.00033 Score=48.39 Aligned_cols=23 Identities=9% Similarity=-0.165 Sum_probs=20.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-.+++.|++|+|||++++.+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00033 Score=48.95 Aligned_cols=23 Identities=9% Similarity=-0.073 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+-+++++|+||+|||++++.|..
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHH
Confidence 34899999999999999988774
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.84 E-value=0.00029 Score=48.81 Aligned_cols=21 Identities=5% Similarity=-0.145 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+|.|++|+|||||++++..
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 578899999999999999874
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.77 E-value=0.0022 Score=40.96 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=33.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEEC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDL 68 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~ 68 (182)
.-|++-|+-|||||||++.++..-... .+||..+.. ........+.-+|.
T Consensus 34 ~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~~-~Y~~~~~~i~H~Dl 86 (158)
T d1htwa_ 34 IMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVE-EYNIAGKMIYHFDL 86 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEE-EEEETTEEEEEEEC
T ss_pred eEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEEE-eeccCCceEEEEEE
Confidence 468889999999999999998644332 677776422 22334555555564
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.77 E-value=0.00033 Score=48.42 Aligned_cols=21 Identities=5% Similarity=-0.268 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.||||+|||++++.+.+
T Consensus 44 giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHH
Confidence 599999999999999999985
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.73 E-value=0.00036 Score=47.46 Aligned_cols=21 Identities=10% Similarity=-0.219 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+||||+++.+..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998875
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.69 E-value=0.00031 Score=48.83 Aligned_cols=21 Identities=10% Similarity=-0.327 Sum_probs=17.6
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
+++.|+||+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999998854
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.66 E-value=0.00059 Score=44.90 Aligned_cols=24 Identities=8% Similarity=-0.316 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
++-|++.|.+||||||+++-|...
T Consensus 3 p~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
Confidence 467899999999999999988653
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.62 E-value=0.00073 Score=45.36 Aligned_cols=24 Identities=8% Similarity=-0.108 Sum_probs=20.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+..-|.+.|.||||||||.+.|..
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998863
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.0005 Score=47.76 Aligned_cols=21 Identities=5% Similarity=-0.268 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.||||+|||++++.+..
T Consensus 47 ~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEeeCCCCCCccHHHHHHHH
Confidence 599999999999999999984
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.60 E-value=0.0006 Score=45.40 Aligned_cols=21 Identities=19% Similarity=-0.013 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|+|-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.58 E-value=0.00052 Score=47.66 Aligned_cols=22 Identities=5% Similarity=-0.225 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|++.||||+|||++++.+...
T Consensus 40 giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEecCCCCCchHHHHHHHHH
Confidence 5999999999999999998853
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.00056 Score=46.90 Aligned_cols=23 Identities=9% Similarity=-0.132 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..+++.|++|+||||+++.+...
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999988753
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.00055 Score=46.51 Aligned_cols=22 Identities=9% Similarity=-0.127 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+++.||+|+||||+++.++..
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHH
Confidence 4899999999999999988753
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.001 Score=47.39 Aligned_cols=28 Identities=11% Similarity=-0.178 Sum_probs=22.6
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhc
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.....++-|++-|++|||||||.+.|..
T Consensus 75 ~~~k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 75 NGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp C-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence 3345678899999999999999888753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.00063 Score=45.97 Aligned_cols=21 Identities=10% Similarity=-0.064 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++-||+|+||||+++.+..
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHHH
Confidence 589999999999999988764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00095 Score=44.83 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=38.9
Q ss_pred CEEEEEEECCCCCCChhh-------hhhhCC-----CCCEEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCCeEEEEee
Q 030122 60 NIKFQVWDLGGQTSIRPY-------WRCYFP-----NTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~-------~~~~~~-----~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i~v~n 126 (182)
+..+.++||+|....... +....+ ..+-.++|.|.+.. +....+...+..+ -+--++++
T Consensus 91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~~~lIlT 162 (211)
T d2qy9a2 91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV--------GLTGITLT 162 (211)
T ss_dssp TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS--------CCCEEEEE
T ss_pred CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc--------CCceEEEe
Confidence 457899999995433221 111222 24678999997653 3344544443333 13467889
Q ss_pred CCCCCCC
Q 030122 127 KQDLPGA 133 (182)
Q Consensus 127 K~D~~~~ 133 (182)
|.|....
T Consensus 163 KlDe~~~ 169 (211)
T d2qy9a2 163 KLDGTAK 169 (211)
T ss_dssp CCTTCTT
T ss_pred ecCCCCC
Confidence 9998653
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.00069 Score=45.04 Aligned_cols=23 Identities=13% Similarity=-0.142 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-+.+.|+||+|||+|+.++....
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988543
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.48 E-value=0.0012 Score=46.44 Aligned_cols=26 Identities=8% Similarity=-0.134 Sum_probs=21.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhh
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~ 38 (182)
....++-|++-|++|||||||...+.
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence 34456889999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.00081 Score=44.98 Aligned_cols=20 Identities=5% Similarity=-0.132 Sum_probs=17.9
Q ss_pred EEEEecCCCChHHHHHHhhc
Q 030122 20 GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~ 39 (182)
|+|-|..||||||+++.|..
T Consensus 5 IviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78889999999999998874
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.00077 Score=45.56 Aligned_cols=22 Identities=9% Similarity=-0.132 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+++-|++|+||||+++.++..
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHH
Confidence 4899999999999999998753
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.00096 Score=45.25 Aligned_cols=22 Identities=14% Similarity=-0.129 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-+.+.|+||+|||+|+.++...
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999998743
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.35 E-value=0.00081 Score=50.35 Aligned_cols=23 Identities=13% Similarity=-0.132 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+-+|+++||+|||||-|+++|..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999875
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.35 E-value=0.001 Score=45.49 Aligned_cols=23 Identities=13% Similarity=-0.149 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-++|.|+||+|||+|..++...-
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58899999999999999987543
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.32 E-value=0.00081 Score=46.87 Aligned_cols=22 Identities=5% Similarity=-0.173 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|++.|++|+|||+|++.+.+.
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcchhHHHHHHHH
Confidence 5999999999999999999743
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.0017 Score=43.36 Aligned_cols=24 Identities=4% Similarity=-0.344 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
++-|++.|..||||||+++.|...
T Consensus 3 k~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 3 RYIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEEEECCCcCCHHHHHHHHHHC
Confidence 456889999999999999977643
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.21 E-value=0.001 Score=48.86 Aligned_cols=22 Identities=9% Similarity=-0.103 Sum_probs=18.2
Q ss_pred eeEEEEEecCCCChHHHHHHhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~ 38 (182)
+-+++++|+||+|||++++.|.
T Consensus 43 k~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 43 KNNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp CCCCEEEECTTSCHHHHHHHHH
T ss_pred CCCCeEECCCCCCHHHHHHHHH
Confidence 3468999999999999886554
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.001 Score=45.19 Aligned_cols=22 Identities=9% Similarity=-0.440 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|+|-|+.||||||+++.|...
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999988753
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.12 E-value=0.0013 Score=47.87 Aligned_cols=21 Identities=10% Similarity=-0.292 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.||||+|||+|+..+.+
T Consensus 156 ~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 156 YWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.0015 Score=43.77 Aligned_cols=21 Identities=19% Similarity=0.071 Sum_probs=17.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|+|-|+.||||||+++.|..
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377779999999998887753
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.08 E-value=0.0017 Score=44.14 Aligned_cols=22 Identities=9% Similarity=-0.056 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-+++.|+||+|||+|+.++...
T Consensus 28 l~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 28 IILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999998754
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=96.04 E-value=0.00097 Score=47.91 Aligned_cols=21 Identities=14% Similarity=-0.062 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|+||+|||+|++++..
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 699999999999999998863
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.03 E-value=0.0016 Score=45.58 Aligned_cols=22 Identities=9% Similarity=-0.135 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-|++.|++|+|||||+.++.+.
T Consensus 46 ~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 46 FLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998753
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0087 Score=41.42 Aligned_cols=75 Identities=9% Similarity=-0.060 Sum_probs=44.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
-+.+.|++|+|||+|+-+++...-. .+..+.++|+.+.-.-......- -+.|-++ ++ .+.
T Consensus 56 itei~G~~gsGKTtl~l~~~~~~q~---------------~g~~~vyidtE~~~~~~~a~~~G-vd~d~v~-~~---~~~ 115 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIAAAQR---------------EGKTCAFIDAEHALDPIYARKLG-VDIDNLL-CS---QPD 115 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH---------------TTCCEEEEESSCCCCHHHHHHTT-CCGGGCE-EE---CCS
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHc---------------CCCEEEEEccccccCHHHHHHhC-CCHHHEE-Ee---cCC
Confidence 4788999999999999888733211 13345678988754322211111 2234443 33 355
Q ss_pred hHHHHHHHHHHHHhc
Q 030122 99 RIQTAKEEFHAILEE 113 (182)
Q Consensus 99 s~~~~~~~~~~~~~~ 113 (182)
+.+...+++..+...
T Consensus 116 ~~E~~~~~i~~l~~~ 130 (263)
T d1u94a1 116 TGEQALEICDALARS 130 (263)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 677777777776554
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.89 E-value=0.0023 Score=43.35 Aligned_cols=23 Identities=4% Similarity=-0.307 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-++|.|++|+|||+|+.++....
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57889999999999999998543
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.87 E-value=0.0024 Score=46.54 Aligned_cols=23 Identities=9% Similarity=-0.169 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-.++++||+|||||-|.++|..
T Consensus 68 ~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 68 KSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CcceeeeCCCCccHHHHHHHHHh
Confidence 34699999999999999998864
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.82 E-value=0.0029 Score=41.12 Aligned_cols=23 Identities=9% Similarity=-0.268 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-|++.|++|+||||++-.|....
T Consensus 16 gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 16 GVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHcC
Confidence 58999999999999999988543
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0024 Score=43.43 Aligned_cols=22 Identities=14% Similarity=-0.072 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-++|.|+||+|||+|+.+++..
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999853
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.80 E-value=0.0034 Score=40.77 Aligned_cols=23 Identities=9% Similarity=-0.295 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-|++.|++|+||||+.-.|....
T Consensus 17 gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 17 GVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHcC
Confidence 58999999999999999988543
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.77 E-value=0.0014 Score=46.06 Aligned_cols=23 Identities=9% Similarity=-0.115 Sum_probs=16.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+.-|+|-|++||||||+.+.|..
T Consensus 4 ~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 4 HPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 44699999999999999997754
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.75 E-value=0.0017 Score=47.97 Aligned_cols=22 Identities=5% Similarity=-0.312 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-|+|.|+.||||||.+..++..
T Consensus 160 liLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 160 IILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHhhh
Confidence 5999999999999999998863
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.74 E-value=0.0045 Score=41.09 Aligned_cols=22 Identities=5% Similarity=-0.384 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
+-|++.|..||||||+++.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999987764
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.0046 Score=44.03 Aligned_cols=21 Identities=14% Similarity=-0.213 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++||+|+|||.|++.+..
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHh
Confidence 589999999999999999874
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0036 Score=42.46 Aligned_cols=21 Identities=10% Similarity=-0.407 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+|=|..||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 688999999999999999875
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.52 E-value=0.025 Score=39.14 Aligned_cols=83 Identities=11% Similarity=-0.009 Sum_probs=48.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
-+.+.|++++|||+|+-+++...- . .+..+.++|+.+.-+-..... .--+.|-++ ++ .++
T Consensus 62 i~e~~G~~~~GKT~l~l~~~~~~q---~------------~g~~~vyIDtE~~~~~e~a~~-~GvD~d~il-~~---~~~ 121 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAVANAQ---A------------AGGVAAFIDAEHALDPDYAKK-LGVDTDSLL-VS---QPD 121 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH---H------------TTCEEEEEESSCCCCHHHHHH-HTCCGGGCE-EE---CCS
T ss_pred eEEEecCCCcHHHHHHHHHHHHHh---c------------CCCEEEEEECCccCCHHHHHH-hCCCHHHeE-Ee---cCC
Confidence 478899999999999987763111 0 234567789988443222222 222344433 34 355
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEe
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFA 125 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~ 125 (182)
+.+++.+....+... +.+.++|+
T Consensus 122 ~~E~~~~~~~~l~~~----~~~~liIi 144 (269)
T d1mo6a1 122 TGEQALEIADMLIRS----GALDIVVI 144 (269)
T ss_dssp SHHHHHHHHHHHHHT----TCEEEEEE
T ss_pred CHHHHHHHHHHHHhc----CCCCEEEE
Confidence 677777776666543 33445553
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.50 E-value=0.004 Score=41.77 Aligned_cols=20 Identities=5% Similarity=-0.204 Sum_probs=17.6
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
-+.+.|++|+|||+|+.+++
T Consensus 28 ~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 28 STLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57888999999999998865
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.41 E-value=0.0028 Score=41.99 Aligned_cols=22 Identities=9% Similarity=-0.350 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
=.+++.||+++|||.|+..++.
T Consensus 54 n~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 54 NCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHHHH
Confidence 3799999999999999998874
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.39 E-value=0.0042 Score=44.28 Aligned_cols=20 Identities=15% Similarity=-0.195 Sum_probs=17.2
Q ss_pred EEEEecCCCChHHHHHHhhc
Q 030122 20 GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~ 39 (182)
+++.|+||+|||.|.+.+.+
T Consensus 126 ~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 44579999999999999875
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.00068 Score=44.58 Aligned_cols=19 Identities=5% Similarity=-0.239 Sum_probs=16.8
Q ss_pred EEEEecCCCChHHHHHHhh
Q 030122 20 GFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~ 38 (182)
.+++|+.|||||||+..+.
T Consensus 27 tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4578999999999999986
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.38 E-value=0.0046 Score=41.42 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|+|=|..||||||+++.|..
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999988863
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.37 E-value=0.0057 Score=39.42 Aligned_cols=24 Identities=13% Similarity=-0.208 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.-|++.|++|+||||+.-.+....
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHcC
Confidence 369999999999999998887553
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.36 E-value=0.026 Score=39.03 Aligned_cols=75 Identities=12% Similarity=-0.025 Sum_probs=44.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
-+.+.|++++|||+|+.+++...-. .+..+.++|+.+.-+-... ..+--+.|-++ ++ .+.
T Consensus 59 itei~G~~~sGKT~l~l~~~~~aqk---------------~g~~v~yiDtE~~~~~~~a-~~~Gvd~d~i~-~~---~~~ 118 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIVAQAQK---------------AGGTCAFIDAEHALDPVYA-RALGVNTDELL-VS---QPD 118 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH---------------TTCCEEEEESSCCCCHHHH-HHTTCCGGGCE-EE---CCS
T ss_pred EEEEecCCccchHHHHHHHHHHHHh---------------CCCEEEEEECCccCCHHHH-HHhCCCchhEE-EE---cCC
Confidence 5788999999999999888742110 1334567898874332222 22222344433 33 355
Q ss_pred hHHHHHHHHHHHHhc
Q 030122 99 RIQTAKEEFHAILEE 113 (182)
Q Consensus 99 s~~~~~~~~~~~~~~ 113 (182)
+.+...+++..+...
T Consensus 119 ~~E~~~~~~~~l~~~ 133 (268)
T d1xp8a1 119 NGEQALEIMELLVRS 133 (268)
T ss_dssp SHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhc
Confidence 677777777776543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.34 E-value=0.0032 Score=44.28 Aligned_cols=18 Identities=11% Similarity=-0.128 Sum_probs=16.3
Q ss_pred EEEEecCCCChHHHHHHh
Q 030122 20 GFSFFIDNFGNLCDTDRL 37 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l 37 (182)
-+++|+-||||||++..+
T Consensus 27 nvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEEECCTTTCSTHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 478999999999999887
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.32 E-value=0.0046 Score=44.33 Aligned_cols=25 Identities=4% Similarity=-0.133 Sum_probs=22.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..++|.|=|.-||||||+++.|...
T Consensus 4 ~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 4 GVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.24 E-value=0.0051 Score=42.62 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-+++.|+||+|||+|+.++..
T Consensus 37 l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 377899999999999888763
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.19 E-value=0.0066 Score=43.52 Aligned_cols=24 Identities=13% Similarity=-0.072 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-++|.|=|.-||||||+++.|..
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred ceEEEEEECCccCCHHHHHHHHHH
Confidence 357999999999999999999875
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=95.09 E-value=0.0049 Score=43.53 Aligned_cols=16 Identities=6% Similarity=-0.303 Sum_probs=13.5
Q ss_pred EEEEEecCCCChHHHH
Q 030122 19 LGFSFFIDNFGNLCDT 34 (182)
Q Consensus 19 ~i~viG~~~~GKssl~ 34 (182)
.++|.|++||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3789999999999654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.0059 Score=40.66 Aligned_cols=21 Identities=10% Similarity=-0.099 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-+++.|++|+||||++..+..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 499999999999999997765
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=95.01 E-value=0.0043 Score=43.46 Aligned_cols=15 Identities=7% Similarity=-0.177 Sum_probs=12.9
Q ss_pred EEEEecCCCChHHHH
Q 030122 20 GFSFFIDNFGNLCDT 34 (182)
Q Consensus 20 i~viG~~~~GKssl~ 34 (182)
++|+|+|||||||.+
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEeeCCccHHHHH
Confidence 688899999999754
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.98 E-value=0.0064 Score=41.31 Aligned_cols=21 Identities=10% Similarity=-0.179 Sum_probs=18.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-+++-|++|+|||++++.+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478899999999999998764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.0078 Score=41.49 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=17.8
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-.++.|++|+|||+|+-++..
T Consensus 31 ~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 366899999999999988763
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.0081 Score=42.08 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
|++++|++|+|||+|+..+..+
T Consensus 45 r~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 45 RGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred eeeEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999988753
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.84 E-value=0.0074 Score=40.39 Aligned_cols=21 Identities=10% Similarity=-0.176 Sum_probs=18.9
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
+.+.|++|+|||-|++.+++.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999998754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.84 E-value=0.0066 Score=44.38 Aligned_cols=19 Identities=11% Similarity=-0.097 Sum_probs=16.6
Q ss_pred EEEEecCCCChHHHHHHhh
Q 030122 20 GFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~ 38 (182)
-+++|+.|||||+++.++.
T Consensus 28 ~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4578999999999999974
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.79 E-value=0.0079 Score=43.01 Aligned_cols=23 Identities=13% Similarity=-0.049 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
-++|.|=|+-||||||+++.|..
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCcCCCHHHHHHHHHH
Confidence 46899999999999999998864
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.0089 Score=44.06 Aligned_cols=21 Identities=10% Similarity=-0.195 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++|+|.+|||||+++..++.
T Consensus 52 H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHHH
Confidence 599999999999999887764
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.03 E-value=0.015 Score=39.28 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|..||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998864
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.02 E-value=0.021 Score=39.51 Aligned_cols=24 Identities=8% Similarity=-0.054 Sum_probs=20.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.+-.+.+.|++++|||+|++.+..
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998874
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.87 E-value=0.021 Score=40.46 Aligned_cols=21 Identities=10% Similarity=-0.160 Sum_probs=18.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-++++|++|+|||.+.+.+..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 578889999999999998774
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=93.46 E-value=0.021 Score=41.25 Aligned_cols=18 Identities=6% Similarity=-0.099 Sum_probs=15.3
Q ss_pred EEEEEecCCCChHHHHHH
Q 030122 19 LGFSFFIDNFGNLCDTDR 36 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~ 36 (182)
-.++.|+||+|||+++..
T Consensus 165 ~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp EEEEECCTTSTHHHHHHH
T ss_pred eEEEEcCCCCCceehHHH
Confidence 578889999999998754
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.37 E-value=0.17 Score=33.40 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=45.7
Q ss_pred CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEE-EEeeCCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~D~~~~ 133 (182)
.+.+.++|+++... ......+..+|.++++...+ ..++....+....+.+ .+.|++ +|.||.+....
T Consensus 111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~ 178 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDR 178 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTT
T ss_pred cCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhcccccccc
Confidence 36899999998643 33444567799999999764 4556666655554433 466765 88999986553
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.35 E-value=0.028 Score=39.01 Aligned_cols=22 Identities=14% Similarity=-0.257 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
|++++|++|+|||+|+..+..+
T Consensus 70 r~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 70 KIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 8999999999999999988643
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=93.05 E-value=0.031 Score=38.33 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=41.6
Q ss_pred CEEEEEEECCCCCCChh-hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRP-YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~ 133 (182)
.+.+.+.|+|+.-.... ........+|.++++.+. +..++.........+.......+.+ .-++.|+.+....
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~ 189 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE 189 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc
Confidence 35789999987543322 222233457888777765 3555665555544443332223443 3478899887653
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=92.67 E-value=0.043 Score=35.53 Aligned_cols=31 Identities=13% Similarity=-0.164 Sum_probs=23.1
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc-ccCCCc
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG 50 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~ 50 (182)
|+|+|...||||.+..++....... |..|..
T Consensus 2 iLVtGGarSGKS~~AE~l~~~~~~~~YiAT~~ 33 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGDAPQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEECCC
T ss_pred EEEECCCCccHHHHHHHHHhcCCCcEEEEccC
Confidence 6899999999999999997543322 555543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=91.54 E-value=0.054 Score=36.83 Aligned_cols=22 Identities=5% Similarity=-0.180 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++|+||+.+.+.+-.
T Consensus 24 ~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 24 CPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp SCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCcCHHHHHHHHHH
Confidence 4589999999999999988753
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.21 E-value=0.051 Score=37.83 Aligned_cols=22 Identities=5% Similarity=-0.209 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
|++++|++|+|||+|+..+..+
T Consensus 70 r~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 70 RELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp BCEEEESTTSSHHHHHHHHHHH
T ss_pred EEEeecCCCCChHHHHHHHHHh
Confidence 8999999999999999887754
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=91.05 E-value=0.045 Score=38.52 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=13.0
Q ss_pred EEEecCCCChHHHH
Q 030122 21 FSFFIDNFGNLCDT 34 (182)
Q Consensus 21 ~viG~~~~GKssl~ 34 (182)
+|+|.+|+|||||-
T Consensus 18 lfFGLSGTGKTTLs 31 (313)
T d2olra1 18 VFFGLSGTGKTTLS 31 (313)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEEccCCCCcccce
Confidence 79999999999976
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=90.86 E-value=0.1 Score=31.61 Aligned_cols=21 Identities=5% Similarity=-0.107 Sum_probs=16.8
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
..++.++.|+|||.++-.+..
T Consensus 10 ~~ll~apTGsGKT~~~~~~~~ 30 (136)
T d1a1va1 10 VAHLHAPTGSGKSTKVPAAYA 30 (136)
T ss_dssp EEEEECCTTSCTTTHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 467889999999998866553
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=90.81 E-value=0.05 Score=38.40 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=13.9
Q ss_pred EEEEecCCCChHHHHH
Q 030122 20 GFSFFIDNFGNLCDTD 35 (182)
Q Consensus 20 i~viG~~~~GKssl~~ 35 (182)
-+|+|.+|+|||||-.
T Consensus 17 alffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLST 32 (318)
T ss_dssp EEEEECTTSCHHHHTC
T ss_pred EEEEccCCCCcccccc
Confidence 4899999999999763
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.57 E-value=0.087 Score=31.59 Aligned_cols=23 Identities=4% Similarity=-0.465 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~ 38 (182)
+-+.|.+-|..|+|||+|.+.|.
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHH
T ss_pred cceEEEEeCCCCCCHHHHHHHHH
Confidence 45789999999999999999886
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=90.32 E-value=0.065 Score=37.10 Aligned_cols=22 Identities=5% Similarity=-0.127 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
|+.++|++|+|||+|+..+...
T Consensus 69 r~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 69 RELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp BCBEEESSSSSHHHHHHHHHHT
T ss_pred eEeeccCCCCChHHHHHHHHhh
Confidence 8999999999999999876543
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=90.23 E-value=0.058 Score=38.09 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=13.5
Q ss_pred EEEEecCCCChHHHH
Q 030122 20 GFSFFIDNFGNLCDT 34 (182)
Q Consensus 20 i~viG~~~~GKssl~ 34 (182)
-+|+|.+|+|||||.
T Consensus 17 alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 369999999999987
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=90.16 E-value=0.097 Score=36.15 Aligned_cols=71 Identities=10% Similarity=0.123 Sum_probs=39.3
Q ss_pred CEEEEEEECCCCCCChhhhh-hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeE-EEEeeCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRPYWR-CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~D~~ 131 (182)
.+.+.++|+|+......... .....++.++.+... +..++..+......+.+.....+.++ .++.|+.+..
T Consensus 118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~ 190 (289)
T d2afhe1 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD 190 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred cCCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcch
Confidence 46788899887543322222 122356666666543 34555555555555544333345555 4788987654
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=89.83 E-value=0.093 Score=36.10 Aligned_cols=20 Identities=10% Similarity=-0.172 Sum_probs=15.6
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
-|++-|..|+||||+.-.+.
T Consensus 10 ~i~~sGKGGVGKTTvaa~lA 29 (296)
T d1ihua1 10 YLFFTGKGGVGKTSISCATA 29 (296)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCcChHHHHHHHHH
Confidence 46789999999999665544
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=89.60 E-value=0.1 Score=35.73 Aligned_cols=19 Identities=5% Similarity=-0.088 Sum_probs=14.4
Q ss_pred EEEEecCCCChHHHHHHhh
Q 030122 20 GFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~ 38 (182)
|++-|..|+||||+.-.|.
T Consensus 23 ii~sGKGGVGKTT~a~nLA 41 (279)
T d1ihua2 23 IMLMGKGGVGKTTMAAAIA 41 (279)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4555999999999755543
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=87.84 E-value=0.19 Score=32.69 Aligned_cols=21 Identities=19% Similarity=0.040 Sum_probs=17.5
Q ss_pred EEEEEecC-CCChHHHHHHhhc
Q 030122 19 LGFSFFID-NFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~-~~GKssl~~~l~~ 39 (182)
|+.|.|-. |+||||+.--|..
T Consensus 3 ~~~i~gt~~GVGKTtvs~~La~ 24 (224)
T d1byia_ 3 RYFVTGTDTEVGKTVASCALLQ 24 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHHHH
Confidence 78899995 9999998776664
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.29 E-value=0.18 Score=33.85 Aligned_cols=20 Identities=5% Similarity=-0.272 Sum_probs=17.7
Q ss_pred EEEEecCCCChHHHHHHhhc
Q 030122 20 GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~ 39 (182)
+++-|+..+||||+++++.-
T Consensus 44 ~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHHH
Confidence 68889999999999998764
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=86.85 E-value=0.19 Score=33.49 Aligned_cols=20 Identities=5% Similarity=-0.228 Sum_probs=17.8
Q ss_pred EEEEecCCCChHHHHHHhhc
Q 030122 20 GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~ 39 (182)
+++-|+..+||||+++++.-
T Consensus 38 ~iiTGpN~~GKSt~lk~i~l 57 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTAL 57 (224)
T ss_dssp EEEESCSSSSHHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhHH
Confidence 78999999999999998764
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.80 E-value=0.25 Score=32.20 Aligned_cols=23 Identities=9% Similarity=-0.432 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...+++-|++|+|||++...+..
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998775
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=84.94 E-value=0.15 Score=30.41 Aligned_cols=14 Identities=14% Similarity=-0.064 Sum_probs=11.9
Q ss_pred EEEEEecCCCChHH
Q 030122 19 LGFSFFIDNFGNLC 32 (182)
Q Consensus 19 ~i~viG~~~~GKss 32 (182)
.+++.+++|+|||.
T Consensus 9 ~~il~~~tGsGKT~ 22 (140)
T d1yksa1 9 TTVLDFHPGAGKTR 22 (140)
T ss_dssp EEEECCCTTSSTTT
T ss_pred cEEEEcCCCCChhH
Confidence 67788899999993
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=84.83 E-value=0.28 Score=30.03 Aligned_cols=18 Identities=22% Similarity=-0.027 Sum_probs=14.0
Q ss_pred EEEecCCCChHH-HHHHhh
Q 030122 21 FSFFIDNFGNLC-DTDRLQ 38 (182)
Q Consensus 21 ~viG~~~~GKss-l~~~l~ 38 (182)
+++||=.||||| |++++-
T Consensus 6 ~i~GpMfsGKTteLi~~~~ 24 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLH 24 (139)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHHH
Confidence 467999999999 666553
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.28 E-value=0.35 Score=31.71 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=38.4
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
+.+.++|+|+... ......+..+|.+++|.... ..++...........+. ...++-++.||.+..
T Consensus 110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~ 174 (232)
T d1hyqa_ 110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTL 174 (232)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTT
T ss_pred cceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc---ccccccccccccccc
Confidence 5688999988653 33334455689999998754 34444444433333222 222355788998654
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=82.87 E-value=0.38 Score=30.79 Aligned_cols=15 Identities=7% Similarity=-0.044 Sum_probs=12.7
Q ss_pred EEEEEecCCCChHHH
Q 030122 19 LGFSFFIDNFGNLCD 33 (182)
Q Consensus 19 ~i~viG~~~~GKssl 33 (182)
++++.+|.|+|||.+
T Consensus 25 n~lv~~pTGsGKT~i 39 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLI 39 (200)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred CeEEEeCCCCcHHHH
Confidence 478889999999964
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.78 E-value=0.44 Score=31.26 Aligned_cols=19 Identities=16% Similarity=-0.148 Sum_probs=15.3
Q ss_pred EEEE-ecCCCChHHHHHHhh
Q 030122 20 GFSF-FIDNFGNLCDTDRLQ 38 (182)
Q Consensus 20 i~vi-G~~~~GKssl~~~l~ 38 (182)
|+|. +..|+||||+.-.|.
T Consensus 5 Iav~~~kGGvGKTtia~nLA 24 (237)
T d1g3qa_ 5 ISIVSGKGGTGKTTVTANLS 24 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCcHHHHHHHHH
Confidence 6677 557999999988775
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.20 E-value=0.18 Score=32.70 Aligned_cols=16 Identities=6% Similarity=-0.251 Sum_probs=13.8
Q ss_pred EEEEEecCCCChHHHH
Q 030122 19 LGFSFFIDNFGNLCDT 34 (182)
Q Consensus 19 ~i~viG~~~~GKssl~ 34 (182)
.+++.+++|+|||...
T Consensus 42 ~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 42 NLLLAMPTAAGKTLLA 57 (202)
T ss_dssp CEEEECSSHHHHHHHH
T ss_pred CEEEEcCCCCchhHHH
Confidence 6899999999999753
|