Citrus Sinensis ID: 030127

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWWVT
Secondary Structure (PSIPRED)
ccEEccccccccccccccccccccccccccccccEEEEccccccEEEEEEccccHHHHHHHccccccccccccccccccccccEEEEccccccccEEEcccccHHHHHHHHHHcccccccEEcccccEEEEEEHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEc
Secondary Structure Prediction (SSPRO)
cccEccccccHEEEEEccccccccccccccccccEEEEcccccccEEEEEccccccccHcccHHHHccccccccccccccccEEEccccccccccEEEcccccHHHHHHHHHHcccccccEEcccccEEEEEEHHHHHEHHccccccccccccccccccHHHHHHHHHHHHHHcccccEEEc
Coil and Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgrtsfalqlpclllsrpgcrvfSVLATSSDRVSALRRSSAvfasgtltansaapssgvytvgdfmttkeelhvvkptttVDEALEILVEKRitgfpvidddwklvglvsdydllaldsisgsgradnsmfpevdstwkvhstrcrsclvkpmgrwwvt
Flexible Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVfasgtltansaapssgvYTVGDFMTTKEElhvvkptttvDEALEILVEKritgfpvidddWKLVGLVSDYDLLALDSIsgsgradnsmfpevdstwkvhstrcrsclvkpmgrwwvt
Low Complexity Region (SEG)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWWVT
Disordered region (IsUnstruct)
**************************TSFALQLPCLLLSRPGCRVFSVLATSSDRVSAL****AVFASGTL********SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG*******MFPEVDSTWKVHSTRCRSCLVKPMGRWWV*
Disordered Region (DISOPRED)
*DSIVL*HSISV*****************ALQLPCLLLSRPGCRVFSV**********************************YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS***********FPEVDSTWKVHSTRCRSCLVKP*******
Disordered Region (DISEMBL)
MDSIVLPHSISVARLR*********RTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWWVT
Disordered Region (DISPRO)
**SIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS***********VFASGTLTANSAAP*SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS***DNSMFPEVDSTWKVHSTRCRSCLVKPMGRWWVT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWWVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
O23193	236	CBS domain-containing pro	yes	no	0.637	0.491	0.726	9e-43
Q9C5D0	238	CBS domain-containing pro	no	no	0.648	0.495	0.553	5e-33
P42851	485	Inosine-5'-monophosphate	yes	no	0.373	0.140	0.408	4e-05
O58045	486	Inosine-5'-monophosphate	yes	no	0.445	0.166	0.357	5e-05
O67820	490	Inosine-5'-monophosphate	yes	no	0.214	0.079	0.475	9e-05
Q9UGJ0	569	5'-AMP-activated protein	yes	no	0.274	0.087	0.36	0.0008

>sp|O23193|CBSX1_ARATH CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2

 Score =  172 bits (437), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 97/117 (82%), Gaps = 1/117 (0%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
           S++  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPV
Sbjct: 54  SASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPV 113

Query: 122 IDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178
           ID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWK  +   +  L K  G+
Sbjct: 114 IDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNA-VQKLLSKTNGK 169

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5D0|CBSX2_ARATH CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1

 Score =  140 bits (352), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 93/130 (71%), Gaps = 12/130 (9%)

Query: 60  RRSSAVFASGTLTANSAAPSS-----------GVYTVGDFMTTKEELHVVKPTTTVDEAL 108
           RRSS    S T++A  AAP+S           G YTVGDFMT ++ LHVVKP+T+VD+AL
Sbjct: 43  RRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDAL 102

Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRC 168
           E+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDSTWK  +   
Sbjct: 103 ELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFN-EL 161

Query: 169 RSCLVKPMGR 178
           +  + K  G+
Sbjct: 162 QKLISKTYGK 171

Arabidopsis thaliana (taxid: 3702)

>sp|P42851|IMDH_PYRFU Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=guaB PE=3 SV=1

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G +T    A   G  TV + MT   E+  V  +  V+EAL+I++E RI   PV+++D KL
Sbjct: 137 GIITKKDIAAREG-RTVKELMT--REVITVPESVDVEEALKIMMENRIDRLPVVNEDGKL 193

Query: 129 VGLVSDYDLLA 139
           VGL++  DL+A
Sbjct: 194 VGLITMSDLVA 204

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|O58045|IMDH_PYRHO Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=guaB PE=1 SV=1

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G +T    A   G   V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KL
Sbjct: 137 GIITKKDIAAREG-KLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193

Query: 129 VGLVSDYDLLALDSISGSGRADNS 152
           VGL++  DL+A      + R +N 
Sbjct: 194 VGLITMSDLVARKKYKNAVRDENG 217

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|O67820|IMDH_AQUAE Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=guaB PE=3 SV=1

 Score = 46.6 bits (109), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 32/40 (80%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           VKP T V EAL+I+ + +I+G PV+D++ KL+G++++ DL
Sbjct: 103 VKPDTRVKEALDIMAKYKISGVPVVDEERKLIGILTNRDL 142

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 91  TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           T   +  + P T + +AL I VE+RI+  PV+D+  K+V + S +D++ L
Sbjct: 432 TYHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINL 481

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
225438783	246	PREDICTED: CBS domain-containing protein	0.972	0.719	0.607	3e-51
317106695	236	JHL03K20.5 [Jatropha curcas]	0.912	0.703	0.646	1e-49
255587643	239	conserved hypothetical protein [Ricinus	0.791	0.602	0.682	1e-44
147802944	288	hypothetical protein VITISV_021555 [Viti	0.972	0.614	0.493	2e-44
224081731	208	predicted protein [Populus trichocarpa]	0.675	0.591	0.706	6e-43
449443418	235	PREDICTED: CBS domain-containing protein	0.807	0.625	0.593	2e-42
449525190	235	PREDICTED: CBS domain-containing protein	0.807	0.625	0.593	2e-42
15234564	236	cystathionine beta-synthase domain-conta	0.637	0.491	0.726	4e-41
357482805	224	Inosine-5'-monophosphate dehydrogenase [	0.642	0.522	0.703	8e-41
217075546	224	unknown [Medicago truncatula] gi|3884951	0.587	0.477	0.743	9e-41

>gi|225438783|ref|XP_002283079.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Vitis vinifera]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 110/181 (60%), Positives = 133/181 (73%), Gaps = 4/181 (2%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+LP +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILLPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
            +RRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EALEILVE RIT
Sbjct: 61  GIRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRIT 120

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG 177
           GFPVIDDDWKLVGLVSDYDLLALDSISG G  D  MFPEVDSTWK  +   +  L K  G
Sbjct: 121 GFPVIDDDWKLVGLVSDYDLLALDSISGGGLTDTIMFPEVDSTWKTFN-ELQKLLSKTNG 179

Query: 178 R 178
           +
Sbjct: 180 K 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106695|dbj|BAJ53196.1| JHL03K20.5 [Jatropha curcas]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/181 (64%), Positives = 130/181 (71%), Gaps = 15/181 (8%)

Query: 1   MDSIV---LPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVS 57
           MDSI+   L H + + RLRA     TS   SFA QLPCLL SRPG R+  + A     +S
Sbjct: 1   MDSILHQELLH-LPITRLRATA---TSPIVSFAQQLPCLLSSRPGRRLLPLSA-----IS 51

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
             RRSSA+ ASG   A+S  P SGVYTVGDFMT KE+L VVKPTTTVDEAL+ LVE RIT
Sbjct: 52  HPRRSSAIAASGAFVASS--PKSGVYTVGDFMTRKEDLQVVKPTTTVDEALQTLVEHRIT 109

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG 177
           GFPVIDDDWKLVGLVSDYDLLALDSISG GR DNSMFPEVDSTWK  +   +  L K  G
Sbjct: 110 GFPVIDDDWKLVGLVSDYDLLALDSISGGGRTDNSMFPEVDSTWKTFN-EVQKLLSKTNG 168

Query: 178 R 178
           +
Sbjct: 169 K 169

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587643|ref|XP_002534340.1| conserved hypothetical protein [Ricinus communis] gi|223525462|gb|EEF28042.1| conserved hypothetical protein [Ricinus communis]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/151 (68%), Positives = 112/151 (74%), Gaps = 7/151 (4%)

Query: 28  SFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGD 87
           SFA QLPCLL S    R    L+     +S  RRSS + A+GTL ANS  P SGVYTVGD
Sbjct: 29  SFAHQLPCLLSSATVSRRLFHLSV----ISWPRRSSTISATGTLMANS--PKSGVYTVGD 82

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSG 147
           FMT KE+L VVKPTTTVDEAL+ LVE RITGFPVIDDDWKLVGLVSDYDLLALDSISG G
Sbjct: 83  FMTRKEDLCVVKPTTTVDEALQTLVEHRITGFPVIDDDWKLVGLVSDYDLLALDSISGGG 142

Query: 148 RADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178
           R DNSMFPEVDSTWK  +   +  L K  G+
Sbjct: 143 RTDNSMFPEVDSTWKTFN-EVQKLLSKTNGK 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802944|emb|CAN64036.1| hypothetical protein VITISV_021555 [Vitis vinifera]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/223 (49%), Positives = 132/223 (59%), Gaps = 46/223 (20%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+ P +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILPPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
            LRRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EALEILVE RIT
Sbjct: 61  GLRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRIT 120

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSI---------------------------------- 143
           GFPVIDDDWKLVGLVSDYDLLALDSI                                  
Sbjct: 121 GFPVIDDDWKLVGLVSDYDLLALDSISELPQLKHVPEDISGKSLVLHGSLERQMKSLFLT 180

Query: 144 --------SGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178
                   SG G  D  MFPEVDSTWK  +   +  L K  G+
Sbjct: 181 AVDVLIFGSGGGLTDTIMFPEVDSTWKTFN-ELQKLLSKTNGK 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081731|ref|XP_002306482.1| predicted protein [Populus trichocarpa] gi|222855931|gb|EEE93478.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 107/133 (80%), Gaps = 10/133 (7%)

Query: 33  LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFA---SGTLTANSAAPSSGVYTVGDFM 89
           +PCLL S PG ++ S+ +     +S  RRS ++ A   SGTL ANS  P SGVYTVGDFM
Sbjct: 1   MPCLLFSTPGRKLVSLSS-----ISWPRRSPSLIAAASSGTLMANS--PKSGVYTVGDFM 53

Query: 90  TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA 149
           T KE+LHVVKPTTTV+EALE LVE+RITGFPVIDDDWKLVGLVSDYDLLALDSISG GR 
Sbjct: 54  TRKEDLHVVKPTTTVNEALETLVERRITGFPVIDDDWKLVGLVSDYDLLALDSISGGGRT 113

Query: 150 DNSMFPEVDSTWK 162
           + +MFPEVDSTWK
Sbjct: 114 ETNMFPEVDSTWK 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443418|ref|XP_004139474.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 115/165 (69%), Gaps = 18/165 (10%)

Query: 9   SISVARLRAPPAGRTSGRTSFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           S+S+A  RA          SF++Q     PC    RP   +    A+ +     LR+S++
Sbjct: 10  SLSLAPFRA---------KSFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTS 55

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
           + ASGTL ANS    +GVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITGFPVIDD
Sbjct: 56  IAASGTLMANSVPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDD 115

Query: 125 DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCR 169
           +WKLVG+VSDYDLLALDSISG GR D SMFPEVDS+WK  +   R
Sbjct: 116 NWKLVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQR 160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525190|ref|XP_004169601.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 115/165 (69%), Gaps = 18/165 (10%)

Query: 9   SISVARLRAPPAGRTSGRTSFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           S+S+A  RA          SF++Q     PC    RP   +    A+ +     LR+S++
Sbjct: 10  SLSLAPFRA---------KSFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTS 55

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
           + ASGTL ANS    +GVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITGFPVIDD
Sbjct: 56  IAASGTLMANSLPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDD 115

Query: 125 DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCR 169
           +WKLVG+VSDYDLLALDSISG GR D SMFPEVDS+WK  +   R
Sbjct: 116 NWKLVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQR 160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234564|ref|NP_195409.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana] gi|75219197|sp|O23193.2|CBSX1_ARATH RecName: Full=CBS domain-containing protein CBSX1, chloroplastic; AltName: Full=CBS domain-containing protein 2; Short=AtCDCP2; AltName: Full=Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2; Short=AtLEJ2; Flags: Precursor gi|4006881|emb|CAB16799.1| putative protein [Arabidopsis thaliana] gi|7270640|emb|CAB80357.1| putative protein [Arabidopsis thaliana] gi|21537376|gb|AAM61717.1| unknown [Arabidopsis thaliana] gi|28392900|gb|AAO41886.1| unknown protein [Arabidopsis thaliana] gi|28827758|gb|AAO50723.1| unknown protein [Arabidopsis thaliana] gi|332661316|gb|AEE86716.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana]

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 97/117 (82%), Gaps = 1/117 (0%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
           S++  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPV
Sbjct: 54  SASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPV 113

Query: 122 IDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178
           ID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWK  +   +  L K  G+
Sbjct: 114 IDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNA-VQKLLSKTNGK 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482805|ref|XP_003611689.1| Inosine-5'-monophosphate dehydrogenase [Medicago truncatula] gi|355513024|gb|AES94647.1| Inosine-5'-monophosphate dehydrogenase [Medicago truncatula]

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 96/118 (81%), Gaps = 1/118 (0%)

Query: 61  RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120
           R S +FA+ TLTANS  P +GVYTVGDFMT K+ELH VKPTTTVDEAL+ LVE RITGFP
Sbjct: 41  RGSPLFAANTLTANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHRITGFP 100

Query: 121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178
           VIDD+WKLVG+VSDYDLLALDSISG G+ DNS+FP+VDSTWK  +   +  L K  G+
Sbjct: 101 VIDDNWKLVGVVSDYDLLALDSISGQGQTDNSLFPDVDSTWKTFN-EVQRLLSKTNGK 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075546|gb|ACJ86133.1| unknown [Medicago truncatula] gi|388495112|gb|AFK35622.1| unknown [Medicago truncatula]

 Score =  171 bits (434), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 92/109 (84%)

Query: 61  RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120
           R S +FA+ TLTANS  P +GVYTVGDFMT K+ELH VKPTTTVDEAL+ LVE RITGFP
Sbjct: 41  RGSPLFAANTLTANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHRITGFP 100

Query: 121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCR 169
           VIDD+WKLVG+VSDYDLLALDSISG G+ DNS+FP+VDSTWK  +   R
Sbjct: 101 VIDDNWKLVGVVSDYDLLALDSISGQGQTDNSLFPDVDSTWKTFNEVQR 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2114970	236	LEJ2 "AT4G36910" [Arabidopsis	0.928	0.716	0.573	1.5e-42
TAIR|locus:2124276	238	LEJ1 "AT4G34120" [Arabidopsis	0.725	0.554	0.525	1.3e-31
UNIPROTKB|Q3AFN9	210	acuB "Acetoin utilization prot	0.274	0.238	0.547	0.00032
TIGR_CMR|CHY_0173	210	CHY_0173 "acetoin utilization	0.274	0.238	0.547	0.00032
TIGR_CMR|CJE_1201	485	CJE_1201 "inosine-5'-monophosp	0.219	0.082	0.525	0.0004

TAIR|locus:2114970 LEJ2 "AT4G36910" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 102/178 (57%), Positives = 122/178 (68%)

Query:     1 MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALR 60
             MD+++    +S   LRA     +S  +S  L LP  L  +P C  F+   +   +     
Sbjct:     1 MDAVLYSVPLSFTPLRA-----SSSPSSPYLLLPRFLSVQP-CHKFTFSRSFPSKSRIPS 54

Query:    61 RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120
              SSA  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFP
Sbjct:    55 ASSA--AGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFP 112

Query:   121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178
             VID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWK  +   +  L K  G+
Sbjct:   113 VIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNA-VQKLLSKTNGK 169

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

TAIR|locus:2124276 LEJ1 "AT4G34120" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 73/139 (52%), Positives = 101/139 (72%)

Query:    46 FSVLATSSDRVSALRRSS----AVFAS-GTLTANSAAPS-SGVYTVGDFMTTKEELHVVK 99
             FS+L  S+ R S+    S    A FA+  ++  N++ P+ +G YTVGDFMT ++ LHVVK
Sbjct:    34 FSLLPLSNRRRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVK 93

Query:   100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159
             P+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDS
Sbjct:    94 PSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS 153

Query:   160 TWKVHSTRCRSCLVKPMGR 178
             TWK  +   +  + K  G+
Sbjct:   154 TWKTFN-ELQKLISKTYGK 171

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|Q3AFN9 acuB "Acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 106 (42.4 bits), Expect = 0.00032, P = 0.00032
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V D MT   EL  VK T T+ EA+    EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMT--RELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CHY_0173 CHY_0173 "acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 106 (42.4 bits), Expect = 0.00032, P = 0.00032
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V D MT   EL  VK T T+ EA+    EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMT--RELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CJE_1201 CJE_1201 "inosine-5'-monophosphate dehydrogenase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
 Identities = 21/40 (52%), Positives = 31/40 (77%)

Query:    98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V P  +V EALEI+ E RI+G PV+D+D KL+G++++ DL
Sbjct:    99 VSPKASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDL 138


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      182       182   0.00098  109 3  11 22  0.41    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.50u 0.16s 17.66t   Elapsed:  00:00:01
  Total cpu time:  17.50u 0.16s 17.66t   Elapsed:  00:00:01
  Start:  Fri May 10 09:44:00 2013   End:  Fri May 10 09:44:01 2013

GO:0003938 "IMP dehydrogenase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23193	CBSX1_ARATH	No assigned EC number	0.7264	0.6373	0.4915	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
pfam00571	57	pfam00571, CBS, CBS domain	9e-14
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	7e-11
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-10
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-09
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-09
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	1e-09
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	2e-09
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	3e-09
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	3e-09
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	3e-09
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	9e-09
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	1e-08
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	2e-08
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	3e-08
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	3e-08
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	4e-08
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	6e-08
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	8e-08
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	9e-08
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	2e-07
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-07
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	2e-07
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	2e-07
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	2e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	3e-07
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	3e-07
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	8e-07
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	9e-07
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	9e-07
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	1e-06
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	1e-06
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	2e-06
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	2e-06
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-06
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	2e-06
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	4e-06
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	4e-06
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	4e-06
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	6e-06
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	1e-05
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	2e-05
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	2e-05
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	2e-05
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	3e-05
cd04614	96	cd04614, CBS_pair_1, The CBS domain, named after h	3e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	3e-05
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	4e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	4e-05
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	4e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	5e-05
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	5e-05
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	5e-05
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	6e-05
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	7e-05
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	8e-05
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	8e-05
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	9e-05
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	9e-05
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	1e-04
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	2e-04
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	2e-04
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	2e-04
cd04608	124	cd04608, CBS_pair_PALP_assoc, This cd contains two	2e-04
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	2e-04
cd04598	119	cd04598, CBS_pair_GGDEF_assoc, This cd contains tw	2e-04
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	2e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	3e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	3e-04
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	4e-04
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	4e-04
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	4e-04
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	5e-04
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	6e-04
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	6e-04
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	8e-04
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	0.001
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	0.001
PRK11543	321	PRK11543, gutQ, D-arabinose 5-phosphate isomerase;	0.001
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	0.001
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	0.001
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.002
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	0.002
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	0.002
cd04597	113	cd04597, CBS_pair_DRTGG_assoc2, This cd contains t	0.002
COG2239	451	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains	0.003
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	0.003
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	0.003
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	0.004
cd04592	133	cd04592, CBS_pair_EriC_assoc_euk, This cd contains	0.004

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 62.2 bits (152), Expect = 9e-14
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT    +  V P T+++EALE++ E  I+  PV+D+D KLVG+V+  DLL
Sbjct: 1   VKDIMTPD--VVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLL 52

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V   MT    +  + P  ++ +A E+++EKR+ G PV+DDD KLVG+V++ DLL
Sbjct: 72  VRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT   ++  VKP T+V +AL ++ E  ++  PV+DD  KLVG++++ D+L
Sbjct: 1   VKDIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDIL 51

Length = 117

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 22/46 (47%), Positives = 33/46 (71%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            ++  V P  TV EAL +++E  I+G PV+DDD +LVG+V++ DLL
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVGD MT   ++  V P T+++EA E+++E  I   PV+DD+ +LVG+V+  D+L
Sbjct: 59  TVGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           V P  TV EALE++ E  I+G PV+DDD KLVG+V++ DL
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDL 46

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V + MT  E L      T+++EALE+L E +I   PV+DD+ KL GL+
Sbjct: 55  PVSEVMT-PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLI 102

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 54.8 bits (133), Expect = 3e-09
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V + MT KE L  V   TT++EALE+L E RI   PV+DD+ +L GL+
Sbjct: 148 PVSEVMT-KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195

Length = 486

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 95  LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL--ALDSI---SGSGRA 149
                P  +V EA+E L++ +I+G PV+DD+  LVG +S+ D L   L+S     G    
Sbjct: 3   PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATV 62

Query: 150 DNSMFPEVDS 159
            + M  EV +
Sbjct: 63  RDIMTTEVLT 72

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 50.2 bits (121), Expect = 3e-09
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V P TT++EALE+L E  I   PV+D++ +LVG+V+  D++
Sbjct: 4   TVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 51.0 bits (123), Expect = 9e-09
 Identities = 21/42 (50%), Positives = 31/42 (73%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V P T+V EA  ++++  I+G PV+DDD +LVG+VS+ DLL
Sbjct: 6   TVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLL 47

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V D MT       + P     EALE++ E +IT  PV+DD+ + VG++  +DLL 
Sbjct: 60  PVADVMTRNP--KTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 20/41 (48%), Positives = 31/41 (75%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + PTTT+ EALE++ E +I   PV+D++ +LVG+V+D DL 
Sbjct: 6   ITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR 46

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 17/42 (40%), Positives = 31/42 (73%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            VK   T+ + +EIL+  +I+G PV+D++ ++VG+VS+ DL+
Sbjct: 5   TVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           V + MT +EE+  V     ++EAL++L E RI   PV+D + +LVGL++  D++ 
Sbjct: 145 VSEVMT-REEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVK 198

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT       V P  +V+EA E+++E++I+G PV+DD  +LVG++++ DL 
Sbjct: 68  KVSDIMTRD--PITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D+M+T  ++  V P T + E  E++VE  I G   + +D +LVG+V+  DLL
Sbjct: 58  VKDYMST--DVVTVPPDTPLSEVQELMVEHDI-GRVPVVEDGRLVGIVTRTDLL 108

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
              +  S      S         V + MT K  +  V   TT+++   I+ +K I   PV
Sbjct: 57  YVTLLYSVIFLDESKIKKLLGKKVEEIMTKK--VITVDEDTTIEDVARIMSKKNIKRLPV 114

Query: 122 IDDDWKLVGLVSDYDLL 138
           +DD  KLVG++S  D++
Sbjct: 115 VDDG-KLVGIISRGDII 130

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 50.6 bits (122), Expect = 9e-08
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           V   MTT E+L        +++  E++++ R   +PV+D+D K+VG++S Y LL+
Sbjct: 248 VSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301

Length = 546

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVID 123
           +     +    AA    +  V + MT    +  V P T ++EALE++VE  +I   PV+D
Sbjct: 44  IITERDILRALAAGGKRLLPVKEVMTKP--VVTVDPDTPLEEALELMVERHKIRRLPVVD 101

Query: 124 DD-WKLVGLVSDYDLL 138
           DD  KLVG+++  D+L
Sbjct: 102 DDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 17/40 (42%), Positives = 29/40 (72%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           V P TT+ EAL ++    I+G PV+D++ KLVG++++ D+
Sbjct: 100 VTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDV 139

Length = 486

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   MT  E+L       T++EA EIL E +I   P++DDD +LVGL++  D+ 
Sbjct: 142 KVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIE 196

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            +  +    ++ +A E++ E RI   PV+++D KLVGL++  DLL 
Sbjct: 2   PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLR 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            V + MT    +  V P  TVDEA+ ++ E+R    PV+D   KLVG+VS
Sbjct: 60  PVSEIMTRN--VITVTPDDTVDEAMALMTERRFRHLPVVDGG-KLVGIVS 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT   ++  V P  TV+EA  ++ E RI   PV++D  +LVG++++ DLL
Sbjct: 68  PVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVEDG-RLVGIITETDLL 119

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYD 136
           V DFMT  E+L      TT+ EA +I+ + ++   P++D +  LV LV   DYD
Sbjct: 163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYD 216

Length = 502

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 14/44 (31%), Positives = 31/44 (70%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
             +P T + + L++LVE+R++  P++D++ K+V + S +D++ L
Sbjct: 5   TARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 45.3 bits (108), Expect = 9e-07
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + MT +E L V     T++EA EIL E +    P+++DD +LV LV+  DL 
Sbjct: 58  PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.2 bits (108), Expect = 9e-07
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVGD MT    +  V     VDEA  ++ E ++   PV+DDD +LVG+VS  DL 
Sbjct: 59  TVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
           TV D MT  E+   ++ T TV++ L+++ +   + FPV++   K+VG+V+  D+L    S
Sbjct: 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPS 248

Query: 143 IS 144
            +
Sbjct: 249 TT 250

Length = 432

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
            V + MT +E+L V     +++EA E+L E R    P+++D+ +LV LVS  DL    
Sbjct: 160 PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217

Length = 495

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + M T   +  V P T + EA EI+VE +I   PV+DD   LVG+++  D L
Sbjct: 68  PVAEVMKTD--VLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            V + M+ K  L  V+P  T+ EA ++  EK I G PV+DDD K+VG+++  D+   
Sbjct: 173 KVKNLMSKK--LITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKA 226

Length = 294

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT    +  ++P T+V +   +++E  I G PV+DD  KLVG+V+  D+L
Sbjct: 69  VSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDG-KLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               MT       V P T VDEA ++L+E  I+  PV+D++ +L+G+++  DLL
Sbjct: 69  AHQIMTRD--PITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
                 T+ +A  +L E +I+G PV+D   KLVG+VS+ D+L L
Sbjct: 5   TCNADDTISDAARLLRENKISGAPVLDGG-KLVGIVSESDILKL 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           EE+  V+ T T+  AL +L +   +  PV+D + K VG +S  D+L
Sbjct: 1   EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            VG+ M+T   L  + P  +++EA +++ +  I   PV+DDD +LVG+V+  D++
Sbjct: 59  PVGEVMSTP--LITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 13/41 (31%), Positives = 28/41 (68%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            +    ++ EA ++++E+ I   PV+D+D +LVG+V+ +D+
Sbjct: 6   TISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDI 46

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V D MT    +  V   T + E  E++ E RI   PV+    +LVG+VS  DLL 
Sbjct: 82  KVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGG-RLVGIVSRADLLR 134

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT  +++  + P  ++++A E++V  +I   PV++D  +LVG+V+  D++
Sbjct: 91  VRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDG-RLVGIVTRGDII 141

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 48  VLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107
             A   D    L + S                       D MT  EE+  V P   V +A
Sbjct: 46  AFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPLVAEDIMT--EEIITVSPNDDVVDA 103

Query: 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            ++++E  I+G PV+D+D  +VG+++  D+   
Sbjct: 104 AKLMLEANISGLPVVDND-NIVGVITKTDICRE 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            ++  V P  TV +A+E + E  ++  PV+DD  ++VG + + DLL
Sbjct: 1   GDVVSVAPDDTVSQAIERMREYGVSQLPVVDDG-RVVGSIDESDLL 45

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 93  EELHVVKPTTTVDEALEILVEKR--ITGFPVIDDDWKLVGLVSDYDL 137
           + L +V P T++ +AL  +  K   +T   V+D+D +LVG+ +D DL
Sbjct: 2   DALPLVSPDTSLKDALLEMSRKGLGMTA--VVDEDGRLVGIFTDGDL 46

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239987 cd04614, CBS_pair_1, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           SG+ T  D +  K E+      TTV E  + +   RI   P+I+ + KL+GL+ D+DLL
Sbjct: 37  SGIITERDLIA-KSEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 96

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 15/36 (41%), Positives = 25/36 (69%)

Query: 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T D+ LE+L E +++G PV+    +LVG+++  DLL
Sbjct: 11  TRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            V D     ++   V P T++ EA  ++ E  +   PV+D++ KL+GLVS  DL
Sbjct: 69  QVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDL 120

Length = 546

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           + L  + P  T+ EA  +     I G PV+DD  KLVG+V+  D+   
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDG-KLVGIVTLSDIAHA 47

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 150
           ++  V    TVDE L ++  +R  G+PV+DD  +LVG+V    L  +  +   GR  
Sbjct: 2   DVVTVPVDLTVDEVLALMFGERHRGYPVVDDG-RLVGIV---TLADIRRVPAEGREA 54

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V P   V EA +++VE  I   PV+DD  KLVG+V+  D++ 
Sbjct: 64  TVSPDDDVKEAAKLMVENNIRRVPVVDDG-KLVGIVTVADIVR 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           TV   MT   +L  V    ++ E L++L E+ +    V++D  +++GL+++ DLL  
Sbjct: 58  TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLRR 114

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            ++ D M   E++  V+P  ++ + L +++++     PV+D+D KLVGL++
Sbjct: 54  KSLEDIM--LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLIT 102

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           ++  V+P  TV EA +++ EK I    V+DD  +LVG+ S+ D++
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIV 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +++  V    T+DEAL+I+ EK+I   PV+DD+ KL+G+V   D+L
Sbjct: 64  SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDDN-KLIGVVRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            +   T ++E L+++       FPV+DDD +LVG+VS  D+  +
Sbjct: 5   TIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI 48

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            V   MT           T V EAL ++V+ +    PV+D   ++VGL+ 
Sbjct: 59  LVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLD 106

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLA 139
              D MT      VV P  ++++AL+   +      PV+DDD  KL+G++S  DLL+
Sbjct: 59  VASDIMTKPPV--VVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           ++  V P T+++EA  +L   RI   PV+D D +LVG+V+  DLL 
Sbjct: 3   DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLR 48

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            V P T++ EAL+++ E  I   PV+D   KLVG+V+D DL
Sbjct: 5   TVTPDTSLMEALKLMKENSIRRLPVVDRG-KLVGIVTDRDL 44

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           TVGD M+    +  V+P T + E + +L +      PV+D+D +LVG+V+  DL+A
Sbjct: 70  TVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TV   M+T   ++ V P  ++  A+E+++E  I   PV+++  +LVG+V  +D+L
Sbjct: 68  TVEKIMSTP--VYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 91  TKEELHV-----VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 145
           T ++LH+     V PT TV +A+EIL E      PV+ +  K++G V+  +LL+      
Sbjct: 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK 395

Query: 146 SGRAD------NSMFPEVDSTWKV 163
           +   D      +  F ++    K+
Sbjct: 396 ANPDDAVSKVMSKKFIQIGEGEKL 419

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|239981 cd04608, CBS_pair_PALP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V PT T  EA+EIL EK     PV+D+  K++G+V
Sbjct: 7   VLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMV 41

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            VG+ M++   L  V   T++ +A +++ E  I    V+DDD +L+GL+S  DLL 
Sbjct: 57  PVGEVMSSP--LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239971 cd04598, CBS_pair_GGDEF_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 93  EELHVVKPTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYDLLAL 140
                V P TTV++ LE       ++   V+DD  + VGL+    L+ L
Sbjct: 1   RPAPTVSPDTTVNDVLERFERDPDLSALAVVDDG-RPVGLIMREALMEL 48

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 119

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
             V P  TV + ++++ E    GFPV+D+  K+VG+VS  DLL  D
Sbjct: 5   ITVSPDNTVKDVIKLIKETGHDGFPVVDNG-KVVGIVSARDLLGKD 49

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 75  SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK----RITGFPVIDDDWKLVG 130
           S A +    +V D MT      V+  T T DE +++   K     I+  PV+D + +++G
Sbjct: 47  SKAVARDKKSVEDIMTRN----VI--TATPDEPIDVAARKMERHNISALPVVDAENRVIG 100

Query: 131 LVSDYDLLAL 140
           +++  D+  L
Sbjct: 101 IITSEDISKL 110

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           VGD MT         P  T+ +AL+ + E+ I   PV+DD  +LVG+VS  DLL
Sbjct: 58  VGDVMTRD--PVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 81  GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           GV TV D MTT  E+  V P  ++ +  +++++ +   +PV+DD  KLVG +S  D+L 
Sbjct: 58  GVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDG-KLVGQISRRDVLR 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVS--DYDLL 138
            V+ P  TV + LEI  +K  +G PV +D     KL+G+V+  D D L
Sbjct: 5   SVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL 52

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALD 141
           TV + MT + ++  +  T TV+E +E+++E   +  PV D D   ++G+V   DLL   
Sbjct: 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRAL 265

Length = 429

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V P T++ EA +++ E+ +    V+D D + +G+V++ D++ 
Sbjct: 5   TVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVR 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           ++  +     V +A +++ +  I+G PV+D+  KL+G +S  DL
Sbjct: 2   KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDL 45

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V DFMT   +    K    + EALE L  ++IT   V+DD  K++G++
Sbjct: 221 EVRDFMTLGPK--TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLL 138
            + P TTV + LE++  K I+G PV++D     KLVG+++  D+ 
Sbjct: 92  TISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR 136

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            V + M     L  V P   ++E  E+L    +    V+D+  K VG+++  DLL  
Sbjct: 58  PVREVMGEP--LPTVDPDAPIEELSELLDRGNVA--VVVDEGGKFVGIITRADLLKY 110

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 97  VVKPTTTVDEALEIL-----VEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V+   TV EALE L       + I    V+D++ +L+G+VS  DLL
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL 47

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 15/72 (20%)

Query: 81  GVYTVGDF---------MTTKEELHVVKPTTT------VDEALEILVEKRITGFPVIDDD 125
           GV+T GD          +TT     + +  TT        +A EIL++++IT  PV+D++
Sbjct: 244 GVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDEN 303

Query: 126 WKLVGLVSDYDL 137
            KL G ++  D 
Sbjct: 304 GKLTGAINLQDF 315

Length = 321

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V+  TT + EA E L+E +     V+D D  +VG+++  DLL
Sbjct: 5   VLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL 46

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V   T++D A ++L E RI   PV+D+  +LVG+V+  DLL
Sbjct: 258 VSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLL 298

Length = 382

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLA 139
            V PTT + EA +I+V       PV+D+   KLVG+++  D+L 
Sbjct: 5   TVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILK 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSIS 144
           V+ P  TV + LEI  +K  +   +  D     KL+G+V+  D+  +   S
Sbjct: 108 VLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKS 158

Length = 495

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 13/53 (24%), Positives = 30/53 (56%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + + MT+ ++L        ++EA  +L + +    P++++D +LV LV+  D+
Sbjct: 165 LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDV 217

Length = 505

>gnl|CDD|239970 cd04597, CBS_pair_DRTGG_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           +P   + EAL ++ E  I   PV+DDD    G+++  DL
Sbjct: 72  RPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDL 110

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLL 138
           T G  MTT  E   +    TVDEAL+ + E+      I    V+D+  KL+G+VS  DLL
Sbjct: 133 TAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL 190

Length = 451

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
             V   T +  A+  +        PV+DD  +LVG+++ YD+L+
Sbjct: 4   SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLS 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           E+   +  T TV +  E+  E   + FPV+D+  K+VG+V+  D+ 
Sbjct: 2   EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA 47

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 18/38 (47%), Positives = 21/38 (55%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
             V P TTV EALE+     I+G PV +D   L GLV 
Sbjct: 93  VTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVG 130

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|239965 cd04592, CBS_pair_EriC_assoc_euk, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEV 157
           V PTTT+ EAL ++++++ +   V+D D  L G+++  D+      + + R       + 
Sbjct: 6   VSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQ 65

Query: 158 DSTWKVHS--TRCRSCLVKPMGRWWVT 182
            +T  V S  T+  S   +  G W  T
Sbjct: 66  TNTCLVSSVCTKGISYGGQECGLWTCT 92

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.46
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.4
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.38
COG2524	294	Predicted transcriptional regulator, contains C-te	99.37
COG4109	432	Predicted transcriptional regulator containing CBS	99.34
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.28
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.28
COG3620	187	Predicted transcriptional regulator with C-termina	99.27
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.26
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.25
PRK11573	413	hypothetical protein; Provisional	99.25
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.25
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.21
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.18
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.18
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.18
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.17
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.16
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.16
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.15
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.15
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.14
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.12
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.12
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.11
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.11
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.1
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.09
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.09
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.09
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.09
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.08
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.07
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.07
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.07
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.06
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.06
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.06
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.04
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.04
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.03
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.02
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.02
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.02
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.02
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.01
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.0
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.0
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.99
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.99
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.99
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.97
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.97
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.97
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.96
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.96
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.96
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.95
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.95
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.95
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.95
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.94
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.94
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.93
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.93
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.93
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.93
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.93
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.93
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.92
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.91
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.9
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.9
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.9
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.9
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.88
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.87
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.85
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.84
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.84
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.84
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.82
COG2905	610	Predicted signal-transduction protein containing c	98.81
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.8
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.8
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.79
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.79
COG0517	117	FOG: CBS domain [General function prediction only]	98.79
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.77
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.75
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.75
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.73
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.7
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.7
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.69
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.66
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.65
COG2524	294	Predicted transcriptional regulator, contains C-te	98.64
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.61
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.6
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.57
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.56
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.56
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.55
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.55
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.55
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.54
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.52
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.52
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.51
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.51
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.51
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.5
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.49
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.49
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.49
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.49
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.48
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.48
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.48
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.48
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.48
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.48
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.47
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.47
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.47
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.46
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.46
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.45
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.45
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.45
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.45
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.43
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.43
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.43
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.42
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.42
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.41
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.41
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.41
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.4
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.4
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.38
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.37
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.37
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.35
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.34
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.34
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.34
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.33
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.33
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.32
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.32
COG4109	432	Predicted transcriptional regulator containing CBS	98.32
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.31
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.3
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.3
COG0517	117	FOG: CBS domain [General function prediction only]	98.29
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.29
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.28
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.27
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.26
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.25
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.25
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.25
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.23
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.2
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.19
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.19
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.15
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.13
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.12
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.12
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.11
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.11
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.09
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.07
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.07
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.01
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.98
COG2905	610	Predicted signal-transduction protein containing c	97.91
PRK11573	413	hypothetical protein; Provisional	97.72
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.71
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.53
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.39
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.35
COG3620	187	Predicted transcriptional regulator with C-termina	97.24
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.24
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.12
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.06
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.03
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	96.59
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	96.31
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	96.18
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	96.11
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.01
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	95.88
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.07
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	94.27
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	94.15
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	92.7
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	91.73
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	91.5
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	91.48
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	90.33
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	86.5
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	84.23
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	82.17

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.46  E-value=1.1e-13  Score=116.19  Aligned_cols=102  Identities=29%  Similarity=0.472  Sum_probs=89.2

Q ss_pred             CCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------------
Q 030127           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------------  144 (182)
Q Consensus        77 ~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------------  144 (182)
                      .......++.|||++  +++++.+++++.+|..+|.+++++.+||+|++.+++|||+.+|+.+.....            
T Consensus       239 ~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~  316 (382)
T COG3448         239 RRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPT  316 (382)
T ss_pred             HHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCc
Confidence            445677899999999  999999999999999999999999999999999999999999998722110            


Q ss_pred             --C---------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhcc
Q 030127          145 --G---------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWW  180 (182)
Q Consensus       145 --~---------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~~  180 (182)
                        +                     +.+.+...+||+|++|+++|+|++.|++.++.+.|
T Consensus       317 vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~  375 (382)
T COG3448         317 VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNW  375 (382)
T ss_pred             ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHH
Confidence              0                     45678888999999999999999999999987755

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.40  E-value=2.3e-12  Score=113.83  Aligned_cols=101  Identities=15%  Similarity=0.138  Sum_probs=87.8

Q ss_pred             CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccCC-----------
Q 030127           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG-----------  145 (182)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~~-----------  145 (182)
                      ..+.+++|+|+|+++.++.+++.+++++++++.|.+++++++||++++ ++++|+|+.+|++.......           
T Consensus       186 l~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~~~~l~~~~~~~~  265 (408)
T TIGR03520       186 VSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKKNFDWQSLLREPY  265 (408)
T ss_pred             hccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccCCCCHHHHcCCCe
Confidence            466788999999998889999999999999999999999999999865 79999999999985322110           


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                    |...+..+++|+|+.|.+.|+||.+|+++.+-+
T Consensus       266 ~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivg  312 (408)
T TIGR03520       266 FVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVG  312 (408)
T ss_pred             EeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhC
Confidence                          556788899999999999999999999999854

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.38  E-value=3.8e-12  Score=107.96  Aligned_cols=102  Identities=21%  Similarity=0.238  Sum_probs=87.7

Q ss_pred             CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccC--C---------
Q 030127           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS--G---------  145 (182)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~--~---------  145 (182)
                      ..+...+|+++|+++.++.++.++++++++++.+.+++++++||++++ ++++|+|+.+|++......  .         
T Consensus        62 l~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~r~  141 (292)
T PRK15094         62 MDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQ  141 (292)
T ss_pred             hccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHcCC
Confidence            466778999999997779999999999999999999999999999876 7999999999997532110  0         


Q ss_pred             ----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 ----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 ----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                      |...+..+++|+|+.|.++|+||.+|+++.+.+.
T Consensus       142 ~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe  191 (292)
T PRK15094        142 AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE  191 (292)
T ss_pred             CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence                            4467788999999999999999999999998653

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.37  E-value=2.6e-12  Score=105.94  Aligned_cols=97  Identities=26%  Similarity=0.322  Sum_probs=85.6

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-------------
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-------------  145 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-------------  145 (182)
                      .....+|.++|++  ++.++.+++++++|..+|.+++++..||+|+ ++++|++|..|+..+.....             
T Consensus       168 siPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~~~kV~~~M~k~v  244 (294)
T COG2524         168 SIPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNLDAKVSDYMRKNV  244 (294)
T ss_pred             ecCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCccccHHHHhccCC
Confidence            3456799999999  9999999999999999999999999999995 59999999999987655421             


Q ss_pred             ---------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                     |..++...+.|+|.+++.+|++|++|+++.++.
T Consensus       245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence                           557788889999999999999999999998864

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.34  E-value=3.5e-12  Score=109.22  Aligned_cols=101  Identities=26%  Similarity=0.344  Sum_probs=89.7

Q ss_pred             CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC------------
Q 030127           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG------------  145 (182)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------  145 (182)
                      .+.+-..|+|+|+|.++..++.+++++++..++..+.++++|||+|+..+++|+||.+|+........            
T Consensus       183 IKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~~t~ieKVMtknp~tv  262 (432)
T COG4109         183 IKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPSTTIEKVMTKNPITV  262 (432)
T ss_pred             hhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCCCccHHHHhccCCeee
Confidence            35566799999998879999999999999999999999999999999999999999999987544321            


Q ss_pred             ------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                  |-.++..++||++++.+++|+||+.|+++.+..
T Consensus       263 ~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~  307 (432)
T COG4109         263 RAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             cccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence                        557899999999999999999999999998853

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=2.6e-11  Score=85.55  Aligned_cols=81  Identities=25%  Similarity=0.340  Sum_probs=70.0

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----C---------CCccCCCceeEeecCC
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----S---------GSGRADNSMFPEVDST  160 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----~---------~~~~~~~~~~pVvd~~  160 (182)
                      ++.++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+......    .         .|.+.+...+||++++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~   81 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKSEVVTATKRTTVSECAQKMKRNRIEQIPIINGN   81 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCCCcEEecCCCCHHHHHHHHHHhCCCeeeEECCC
Confidence            67889999999999999999999999999988999999999999864311    1         1557777889999988


Q ss_pred             CcEEEEEeHHHHHH
Q 030127          161 WKVHSTRCRSCLVK  174 (182)
Q Consensus       161 ~k~~GiVt~~dil~  174 (182)
                      ++++|++++.++++
T Consensus        82 ~~~~Giit~~di~~   95 (96)
T cd04614          82 DKLIGLLRDHDLLK   95 (96)
T ss_pred             CcEEEEEEHHHhhc
Confidence            99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=3.5e-11  Score=85.47  Aligned_cols=81  Identities=20%  Similarity=0.219  Sum_probs=70.1

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccc----cC---------CCccCCCceeEeecC
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS----IS---------GSGRADNSMFPEVDS  159 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~----~~---------~~~~~~~~~~pVvd~  159 (182)
                      ++.++.+++++.+|++.|.+++++.+||+|++ |+++|+||..|+.+...    ..         .|.+.+...+||+++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~   81 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILRLVSIHPERSLFDAALLLLKNKIHRLPVIDP   81 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhheeeEEeCCCCcHHHHHHHHHHCCCCEeeEEEC
Confidence            57899999999999999999999999999975 89999999999986431    11         155788899999998


Q ss_pred             C-CcEEEEEeHHHHHH
Q 030127          160 T-WKVHSTRCRSCLVK  174 (182)
Q Consensus       160 ~-~k~~GiVt~~dil~  174 (182)
                      + ++++|+++..|+++
T Consensus        82 ~~~~~~giit~~d~~~   97 (98)
T cd04618          82 STGTGLYILTSRRILK   97 (98)
T ss_pred             CCCCceEEeehhhhhc
Confidence            7 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.27  E-value=1.4e-11  Score=95.21  Aligned_cols=94  Identities=18%  Similarity=0.255  Sum_probs=76.9

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC---------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---------------  145 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~---------------  145 (182)
                      ..+++..+|+.  +++.+.+++++.+++++|.+++++++||+++ |+++|-||..++.++.....               
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~  139 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVMGEP  139 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCC
Confidence            55788999999  9999999999999999999999999999995 99999999999987653221               


Q ss_pred             Cc--------------cCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 SG--------------RADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ~~--------------~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                      |.              ......+.|+ ++|+++|+||+.|+++.+.+
T Consensus       140 fP~Vs~~~~l~vI~~LL~~~~AVlV~-e~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         140 FPTVSPDESLNVISQLLEEHPAVLVV-ENGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             CCcCCCCCCHHHHHHHHhhCCeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence            11              1122233344 78999999999999998765

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.26  E-value=2.5e-11  Score=103.31  Aligned_cols=92  Identities=20%  Similarity=0.146  Sum_probs=79.1

Q ss_pred             ccccccccccCCC--eEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc---C----------C-
Q 030127           82 VYTVGDFMTTKEE--LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---S----------G-  145 (182)
Q Consensus        82 ~~~V~diM~~~~~--~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~---~----------~-  145 (182)
                      ..+|+++|.+  +  +.++++++++.+|++.|.+.+...+||+|++|+++|+|+.+|+.+....   .          . 
T Consensus       196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence            5789999999  7  9999999999999999999999999999999999999999997653211   0          0 


Q ss_pred             ---------------CccCCCceeEeecCCCcEEEEEeHHHHHHH
Q 030127          146 ---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKP  175 (182)
Q Consensus       146 ---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~  175 (182)
                                     |...+...+||+|++++++|+|++.|++++
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence                           446778889999988999999999999864

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.25  E-value=1.9e-11  Score=78.15  Aligned_cols=55  Identities=45%  Similarity=0.685  Sum_probs=52.2

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        85 V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      |+++|++  ++.++++++++.++++.|.+++++.+||+|++|+++|+|+.+|+++..
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            5789999  999999999999999999999999999999999999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK11573 hypothetical protein; Provisional

Probab=99.25  E-value=5.5e-11  Score=105.31  Aligned_cols=102  Identities=12%  Similarity=0.028  Sum_probs=88.1

Q ss_pred             CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhcccc------C------
Q 030127           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSI------S------  144 (182)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~------~------  144 (182)
                      ..+.+.+|+++|+|+.++.+++.+++++++++.+.+++++++||++++ ++++|+|..+|++.....      .      
T Consensus       182 l~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~  261 (413)
T PRK11573        182 LDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAA  261 (413)
T ss_pred             hccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhc
Confidence            467788999999999999999999999999999999999999999765 899999999999753211      0      


Q ss_pred             -C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          145 -G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       145 -~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                       .                |...+..+..|+|+.|...|+||.+|+++.+-+.
T Consensus       262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGe  313 (413)
T PRK11573        262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD  313 (413)
T ss_pred             cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCC
Confidence             0                5567778888999999999999999999987653

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=8e-11  Score=85.40  Aligned_cols=81  Identities=23%  Similarity=0.428  Sum_probs=68.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC----------------------------C
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----------------------------G  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~----------------------------~  145 (182)
                      ++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|++......                            .
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   81 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD   81 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence            678999999999999999999999999999889999999999987522100                            0


Q ss_pred             ---------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ---------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ---------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                               |...+...+||++++++++|++|+.++++
T Consensus        82 ~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence                     33567778999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.21  E-value=1.6e-10  Score=83.00  Aligned_cols=81  Identities=21%  Similarity=0.240  Sum_probs=68.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----CC------------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----SG------------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----~~------------------------  145 (182)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+|+..|+.+....    ..                        
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al~~   81 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLLRI   81 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHHHH
Confidence            57889999999999999999999999999988999999999998753211    00                        


Q ss_pred             CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      |...+...+||+|+++++.|++|..|+++
T Consensus        82 m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          82 FRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            44667778999998899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.18  E-value=9.1e-11  Score=107.62  Aligned_cols=98  Identities=18%  Similarity=0.204  Sum_probs=82.6

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc---c---CC-------
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS---I---SG-------  145 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~---~---~~-------  145 (182)
                      ....++|+|+|++  ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+.+...   .   ..       
T Consensus       443 ~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~  520 (574)
T PRK01862        443 RLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHT  520 (574)
T ss_pred             HHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhccC
Confidence            3467899999998  8899999999999999999999999999999999999999999876211   0   00       


Q ss_pred             -----------------CccCCCceeEeecCC--CcEEEEEeHHHHHHHhhh
Q 030127          146 -----------------SGRADNSMFPEVDST--WKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 -----------------~~~~~~~~~pVvd~~--~k~~GiVt~~dil~~l~~  178 (182)
                                       +.+.+...+||+|++  ++++|+|++.|+++.+.+
T Consensus       521 ~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        521 PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence                             345667789999876  479999999999999865

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=2e-10  Score=82.74  Aligned_cols=81  Identities=21%  Similarity=0.162  Sum_probs=68.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-------CC---------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-------SG---------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-------~~---------------------  145 (182)
                      .+.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+.+....       ..                     
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a   81 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDV   81 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHH
Confidence            36789999999999999999999999999989999999999998753211       00                     


Q ss_pred             ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                         +...+...+||++++++++|++++.++++
T Consensus        82 ~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          82 WQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence               34667778999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.18  E-value=1.9e-10  Score=102.32  Aligned_cols=104  Identities=22%  Similarity=0.174  Sum_probs=90.2

Q ss_pred             CCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEee-CCCcEEEEEeHHHHHhccccC---C-------
Q 030127           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSIS---G-------  145 (182)
Q Consensus        77 ~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD-~~g~lvGiVt~~Dll~~~~~~---~-------  145 (182)
                      ...+.+.+|+++|+|+.++.+++.+.+++++.+.+.+++++++||++ +.+.++|++..+|++......   .       
T Consensus       200 v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~  279 (429)
T COG1253         200 VLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVR  279 (429)
T ss_pred             HhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhccc
Confidence            35678889999999999999999999999999999999999999999 448999999999998643322   1       


Q ss_pred             -----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhcc
Q 030127          146 -----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWW  180 (182)
Q Consensus       146 -----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~~  180 (182)
                                       |...+..+..|+|+.|.+.|+||.+|+++.+.+.+
T Consensus       280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei  331 (429)
T COG1253         280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEI  331 (429)
T ss_pred             CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCC
Confidence                             44667788889999999999999999999987643

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.17  E-value=2e-10  Score=103.38  Aligned_cols=96  Identities=20%  Similarity=0.251  Sum_probs=81.9

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC---------------
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---------------  144 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~---------------  144 (182)
                      ...+++.++|.+  ++.++.+++++.++++.|.+++++.+||+|++++++|+|+.+|+.......               
T Consensus        86 l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~~~~~V~diMt~~~itV~~  163 (479)
T PRK07807         86 VAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFTQVRDVMSTDLVTLPA  163 (479)
T ss_pred             Hhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCccCCCHHHhccCCceEECC
Confidence            456788999999  999999999999999999999999999999889999999999986532110               


Q ss_pred             ---------CCccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          145 ---------GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       145 ---------~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                               .|...+...+||+|++++++|+||+.|+++...
T Consensus       164 d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        164 GTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             CCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                     144667778999998899999999999998654

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.16  E-value=2.4e-10  Score=84.23  Aligned_cols=83  Identities=28%  Similarity=0.220  Sum_probs=66.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------C----------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------G----------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------~----------------------  145 (182)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|++......      .                      
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v~   82 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKLS   82 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHHH
Confidence            688999999999999999999999999999889999999999998522110      0                      


Q ss_pred             --C---------ccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          146 --S---------GRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       146 --~---------~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                        +         .......+||++++++++|+||+.|+++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          83 RILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             hhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence              0         111334456778789999999999998763

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.16  E-value=3e-10  Score=80.80  Aligned_cols=82  Identities=28%  Similarity=0.334  Sum_probs=69.2

Q ss_pred             CCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC------------------------Ccc
Q 030127           93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG------------------------SGR  148 (182)
Q Consensus        93 ~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------------------~~~  148 (182)
                      +++.++.++++++++++.|.+++.+.+||+|++|+++|+|+.+|++.......                        +..
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~   81 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKDPDTTIEKVMTKNPITVNPKTSVASVAHMMIW   81 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcccccccHHHHhcCCCeEECCCCCHHHHHHHHHH
Confidence            36889999999999999999999999999998899999999999875422110                        335


Q ss_pred             CCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          149 ADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       149 ~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      .+...+||++++++++|+++..++++
T Consensus        82 ~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          82 EGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             cCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            66788999998999999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.15  E-value=3.4e-10  Score=81.26  Aligned_cols=82  Identities=26%  Similarity=0.236  Sum_probs=68.5

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC--------------C--------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------------G--------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------------~--------------  145 (182)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+.......              .              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l   81 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHAL   81 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHHH
Confidence            577899999999999999999999999999889999999999987532110              0              


Q ss_pred             --CccCCCceeEeecCC--CcEEEEEeHHHHHHH
Q 030127          146 --SGRADNSMFPEVDST--WKVHSTRCRSCLVKP  175 (182)
Q Consensus       146 --~~~~~~~~~pVvd~~--~k~~GiVt~~dil~~  175 (182)
                        +...+...+||++++  ++++|+|++.+++++
T Consensus        82 ~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          82 DRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             HHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence              345677789999887  799999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.15  E-value=2.2e-10  Score=97.94  Aligned_cols=94  Identities=20%  Similarity=0.204  Sum_probs=77.7

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------C---------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------G---------  145 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------~---------  145 (182)
                      ..++|+++|++..++.++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+.+.....      .         
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~~  279 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPGG  279 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCCC
Confidence            6678999998533689999999999999999999988888889889999999999987543211      0         


Q ss_pred             ---------------CccCCCceeEeecCCCcEEEEEeHHHHHHH
Q 030127          146 ---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKP  175 (182)
Q Consensus       146 ---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~  175 (182)
                                     |...+...+||++ +++++|+|++.|+++.
T Consensus       280 ~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        280 IRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             EEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence                           4466778889997 5799999999999875

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.14  E-value=5.4e-10  Score=78.80  Aligned_cols=81  Identities=19%  Similarity=0.251  Sum_probs=68.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-----------------------CCccCC
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-----------------------GSGRAD  150 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-----------------------~~~~~~  150 (182)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+++.+|++......                       .+.+.+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASGGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHD   81 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcccchhhhcccCCEEECCCCCHHHHHHHHHHCC
Confidence            578899999999999999999999999999889999999999988643211                       044567


Q ss_pred             CceeEeecCCCcEEEEEeHHHHHH
Q 030127          151 NSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       151 ~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      ...+||++++++++|++++.++++
T Consensus        82 ~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          82 MSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             CCeeeEECCCCcEEEEEEHHHhhc
Confidence            777899998899999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.12  E-value=6.3e-10  Score=78.58  Aligned_cols=81  Identities=27%  Similarity=0.337  Sum_probs=68.1

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-------------------------Ccc
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-------------------------SGR  148 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-------------------------~~~  148 (182)
                      ++.++.+++++.++++.|.+.++..+||+|++|+++|+++.+|+........                         +..
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~   82 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKEAKSLEDIMLEDVFTVQPDASLRDVLGLVLK   82 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhcCCcHhHhhcCCceEECCCCcHHHHHHHHHH
Confidence            6788999999999999999999999999998899999999999875421100                         334


Q ss_pred             CCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          149 ADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       149 ~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      .+...+||++++++++|+++++++++
T Consensus        83 ~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          83 RGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             cCCceeeEECCCCeEEEEEehHHhhc
Confidence            56678999998899999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.12  E-value=6.4e-10  Score=79.06  Aligned_cols=81  Identities=22%  Similarity=0.277  Sum_probs=68.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccC----C-----------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS----G-----------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~----~-----------------------  145 (182)
                      ++.++++++++.++++.|.+.+++.+||+|++ |+++|+++.+|+++.....    .                       
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   81 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDLLRPPLFVPESTPLDDLLEE   81 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHHhcCCeecCCCCcHHHHHHH
Confidence            57889999999999999999999999999988 9999999999987543211    0                       


Q ss_pred             CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      +...+...+||++++++++|++++.++++
T Consensus        82 ~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          82 MRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             HHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            34567788999998899999999999875

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.11  E-value=9.3e-10  Score=78.09  Aligned_cols=81  Identities=25%  Similarity=0.424  Sum_probs=67.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC----------C----------------Cc
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----------G----------------SG  147 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~----------~----------------~~  147 (182)
                      ++..+.+++++.++++.|.++++..+||+|++|+++|+++.+|+++.....          .                +.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~   82 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARKME   82 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHHHH
Confidence            678899999999999999999999999999889999999999997432110          0                33


Q ss_pred             cCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          148 RADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       148 ~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      ..+...+||++++++++|++++.++++
T Consensus        83 ~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          83 RHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            455578899998899999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=8.1e-10  Score=78.65  Aligned_cols=81  Identities=20%  Similarity=0.290  Sum_probs=67.1

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-------------C---------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------G---------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-------------~---------------  145 (182)
                      ++.++++++++.++++.|.+.++..+||+|++|+++|+++.+|+++.....             .               
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~   81 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAK   81 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHHH
Confidence            578899999999999999999999999999889999999999987542110             0               


Q ss_pred             -CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 -SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 -~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                       +...+...+||+++++++.|++++.++++
T Consensus        82 ~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          82 LMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             HHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence             22345567899998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.10  E-value=8.5e-10  Score=79.90  Aligned_cols=81  Identities=28%  Similarity=0.469  Sum_probs=68.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC----------------C------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----------------G------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~----------------~------------  145 (182)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+|+.+|++......                .            
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   82 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVTV   82 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCeee
Confidence            688999999999999999999999999999889999999999986432110                0            


Q ss_pred             ------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                                  +...+...+||++++++++|++++.|+++
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          83 RPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             CCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence                        33556778999998999999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=6.9e-10  Score=80.32  Aligned_cols=81  Identities=26%  Similarity=0.289  Sum_probs=67.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----------------CC------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----------------SG------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----------------~~------------  145 (182)
                      ++.++.+++++.++++.|.++++..+||+|++|+++|+|+..|+.+....                ..            
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   81 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLE   81 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHH
Confidence            57889999999999999999999999999988999999999997753210                01            


Q ss_pred             ----CccCCCceeEeecCC---CcEEEEEeHHHHHH
Q 030127          146 ----SGRADNSMFPEVDST---WKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ----~~~~~~~~~pVvd~~---~k~~GiVt~~dil~  174 (182)
                          |.+.+...+||++++   ++++|+||+.++++
T Consensus        82 ~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          82 AAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence                335667789999887   69999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=8e-10  Score=78.56  Aligned_cols=81  Identities=23%  Similarity=0.354  Sum_probs=67.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc------------CC----------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI------------SG----------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~------------~~----------------  145 (182)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+.+....            ..                
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~   81 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVLRL   81 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHHHH
Confidence            57889999999999999998889999999988999999999998764211            00                


Q ss_pred             CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      +...+...+||++++++++|++++.++.+
T Consensus        82 ~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          82 MQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            33556678999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=8.4e-10  Score=79.19  Aligned_cols=80  Identities=18%  Similarity=0.168  Sum_probs=66.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccc------c-CC--------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS------I-SG--------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~------~-~~--------------------  145 (182)
                      ++.++.+++++.++++.|.+++++.+||+|++ |+++|+++.+|+++...      . ..                    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY   81 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence            67899999999999999999999999999987 89999999999876210      0 00                    


Q ss_pred             ----CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ----SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ----~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                          +...+...+||+++ ++++|++++.++++
T Consensus        82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence                33556778899987 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=1e-09  Score=78.41  Aligned_cols=79  Identities=27%  Similarity=0.264  Sum_probs=65.5

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-----------CC-----------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-----------SG-----------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-----------~~-----------------  145 (182)
                      ++.++++++++.++++.|.+.+++.+||+|++|+++|+++.+|+++....           ..                 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~   81 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDAD   81 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCC
Confidence            67889999999999999999999999999988999999999998653210           00                 


Q ss_pred             -------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 -------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 -------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                             +..  ...+||++++++++|++|+.++++
T Consensus        82 l~~a~~~~~~--~~~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          82 IEEILHLLID--QPFLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             HHHHHHHHhc--CCceeEEeCCCeEEEEEEHHHhhc
Confidence                   222  235899998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.08  E-value=1.3e-09  Score=77.33  Aligned_cols=80  Identities=29%  Similarity=0.384  Sum_probs=65.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-------C---------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------G---------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-------~---------------------  145 (182)
                      ++.++.+++++.++++.|.+.+++.+||+|++++++|+++.+|+++.....       .                     
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   81 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA   81 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence            578899999999999999999999999999889999999999988532110       0                     


Q ss_pred             ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                         +...+...+||+++ ++++|+++..++++
T Consensus        82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence               22445567889887 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.07  E-value=1.2e-09  Score=79.58  Aligned_cols=80  Identities=19%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccc-----------------------cCC----
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS-----------------------ISG----  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~-----------------------~~~----  145 (182)
                      ++.++.+++++.++++.|.++++..+||+|++ |+++|+|+.+|+++...                       ...    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI   81 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence            67889999999999999999999999999987 99999999999865210                       000    


Q ss_pred             ------------CccCCCceeEeecCCCcEEEEEeHHHHH
Q 030127          146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLV  173 (182)
Q Consensus       146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil  173 (182)
                                  |.+.+...+||++++++++|+||..++-
T Consensus        82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence                        4466777899999989999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.07  E-value=1.5e-09  Score=77.65  Aligned_cols=81  Identities=19%  Similarity=0.201  Sum_probs=67.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-----CC-----------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-----SG-----------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-----~~-----------------------  145 (182)
                      ++.++.+++++.++++.|.+.+...++|+|++|+++|+++.+|+++....     ..                       
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~   82 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILA   82 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHHH
Confidence            46789999999999999999999999999988999999999997643211     00                       


Q ss_pred             -CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 -SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 -~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                       +...+...+||++++++++|+++..+++.
T Consensus        83 ~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          83 LMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             HHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence             34566778999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.07  E-value=1e-09  Score=98.09  Aligned_cols=98  Identities=21%  Similarity=0.191  Sum_probs=81.2

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHH-----cCCCEEEEeeCCCcEEEEEeHHHHHhccccCC--------
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISG--------  145 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~-----~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~--------  145 (182)
                      .....+++++|++  ++.++++++++.++++.|++     ++...++|+|++++++|+|+.+|++.......        
T Consensus       127 ~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~~~~~v~~im~~~  204 (449)
T TIGR00400       127 SYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAKPEEILSSIMRSS  204 (449)
T ss_pred             CCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCCCCCcHHHHhCCC
Confidence            4466789999998  99999999999999999986     45567899998899999999999864321100        


Q ss_pred             ----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                      +.+.+...+||+|++++++|+||.+|+++.+.+
T Consensus       205 ~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~  253 (449)
T TIGR00400       205 VFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS  253 (449)
T ss_pred             CeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence                            445677789999999999999999999988765

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=1.3e-09  Score=77.76  Aligned_cols=81  Identities=23%  Similarity=0.347  Sum_probs=66.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------C----------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------G----------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------~----------------------  145 (182)
                      ++..+.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+++.....      .                      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR   81 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence            367889999999999999999999999999889999999999997532100      0                      


Q ss_pred             --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                        +...+...+||++++++++|+++..++++
T Consensus        82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence              33455567899998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.06  E-value=6.4e-10  Score=79.66  Aligned_cols=81  Identities=20%  Similarity=0.215  Sum_probs=66.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcC-CCEEEEeeCCCcEEEEEeHHHHHhcccc--------------CC-------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSI--------------SG-------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~-~~~lPVvD~~g~lvGiVt~~Dll~~~~~--------------~~-------------  145 (182)
                      ++.++++++++.++++.|.+++ .+.+||+|++|+++|+|+.+|++.....              ..             
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~a   81 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAEV   81 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHHHH
Confidence            6788999999999999997765 8899999988999999999998754210              00             


Q ss_pred             ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                         |...+...+||++++++++|+++..++++
T Consensus        82 ~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          82 LKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence               34567778999998899999999998865

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=1.3e-09  Score=79.76  Aligned_cols=81  Identities=21%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc------c-----------------CC-----
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS------I-----------------SG-----  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~------~-----------------~~-----  145 (182)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+++...      .                 ..     
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRPL   81 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCCC
Confidence            5788999999999999999999999999998899999999999875321      0                 00     


Q ss_pred             ---------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                                     +.+.+...+||++++++++|+||+.++++
T Consensus        82 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          82 ITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             eEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence                           33556677899998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.04  E-value=2.7e-09  Score=75.68  Aligned_cols=80  Identities=24%  Similarity=0.318  Sum_probs=66.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------------C----------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------------G----------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------------~----------------  145 (182)
                      ++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++.+|+++.....            .                
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~   80 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAIRL   80 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHHHH
Confidence            6788999999999999999999999999997 9999999999988642110            0                


Q ss_pred             CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      +...+...+||+++++++.|+++..++++
T Consensus        81 ~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          81 MNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            33455668899998899999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.04  E-value=2.5e-09  Score=75.74  Aligned_cols=80  Identities=30%  Similarity=0.436  Sum_probs=67.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-----C-----------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-----G-----------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-----~-----------------------  145 (182)
                      ++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++.+|+.+.....     .                       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   80 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDALK   80 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHHHH
Confidence            6788999999999999999999999999997 9999999999988533211     0                       


Q ss_pred             -CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 -SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 -~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                       +...+...+||+++++++.|+++..++++
T Consensus        81 ~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          81 RMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence             33556678999998899999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.03  E-value=2.1e-09  Score=76.27  Aligned_cols=81  Identities=28%  Similarity=0.384  Sum_probs=67.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----C---------C---------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----S---------G---------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----~---------~---------------  145 (182)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+|+.+|+.+....    .         .               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   81 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDAL   81 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHHHH
Confidence            67889999999999999999999999999988999999999999753211    0         0               


Q ss_pred             --CccCCCceeEeecC-CCcEEEEEeHHHHHH
Q 030127          146 --SGRADNSMFPEVDS-TWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 --~~~~~~~~~pVvd~-~~k~~GiVt~~dil~  174 (182)
                        +...+...+||+++ .++++|+++..+++.
T Consensus        82 ~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          82 KKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence              34556667899987 889999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.02  E-value=1.6e-09  Score=77.08  Aligned_cols=79  Identities=29%  Similarity=0.292  Sum_probs=63.1

Q ss_pred             EcCCCCHHHHHHHHHHcC-----CCEEEEeeCCCcEEEEEeHHHHHhccccCC------------------------Ccc
Q 030127           98 VKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISG------------------------SGR  148 (182)
Q Consensus        98 v~~~~tl~ea~~~m~~~~-----~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------------------~~~  148 (182)
                      +.+++++.++++.|.+++     +..+||+|++|+++|+|+.+++++......                        +..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~   81 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLADPDTPVSDIMDTDVISVSADDDQEEVARLFEK   81 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCCCcchHHHHhCCCCeEEcCCCCHHHHHHHHHH
Confidence            568899999999998877     468999998899999999999875321100                        334


Q ss_pred             CCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          149 ADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       149 ~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                      .+...+||++++++++|+++..++++++
T Consensus        82 ~~~~~~~Vv~~~~~~~Gvit~~dll~~~  109 (109)
T cd04606          82 YDLLALPVVDEEGRLVGIITVDDVIDVI  109 (109)
T ss_pred             cCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence            5556789999889999999999998763

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.02  E-value=2.4e-09  Score=77.33  Aligned_cols=81  Identities=26%  Similarity=0.365  Sum_probs=67.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-------------CC---------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-------------SG---------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-------------~~---------------  145 (182)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+++....             ..               
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~   81 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeC
Confidence            57889999999999999999999999999988999999999998754310             00               


Q ss_pred             -----------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 -----------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 -----------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                                 +...+...+||++++++++|+++..++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence                       33445567899998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.02  E-value=2.1e-09  Score=76.52  Aligned_cols=80  Identities=21%  Similarity=0.275  Sum_probs=67.1

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-----C-----------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-----G-----------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-----~-----------------------  145 (182)
                      ++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|++......     .                       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~   81 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEALD   81 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHHHH
Confidence            578899999999999999999999999999889999999999987542210     0                       


Q ss_pred             -CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 -SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 -~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                       |...+...+||+++ ++++|+++..++++
T Consensus        82 ~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          82 IMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence             34566778999987 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.02  E-value=2.4e-09  Score=77.61  Aligned_cols=81  Identities=28%  Similarity=0.352  Sum_probs=67.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccC-----------------C----------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS-----------------G----------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~-----------------~----------  145 (182)
                      ++.++.++.++.++++.|.+.++..+||+|++ |+++|+|+.+|++......                 .          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVI   81 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCce
Confidence            57889999999999999999999999999987 9999999999987432110                 0          


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                                    +...+...+||++++++++|+|++.++++
T Consensus        82 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          82 TITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             EeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence                          33456667899988899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.01  E-value=2.3e-09  Score=76.28  Aligned_cols=81  Identities=25%  Similarity=0.282  Sum_probs=66.9

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------C----------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------G----------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------~----------------------  145 (182)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..++++.....      .                      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   82 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEAL   82 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHHHH
Confidence            677889999999999999988889999999889999999999887543210      0                      


Q ss_pred             --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                        +...+...+||++++++++|+++..++++
T Consensus        83 ~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          83 ELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence              23455568899998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.00  E-value=1.2e-09  Score=97.17  Aligned_cols=93  Identities=26%  Similarity=0.219  Sum_probs=75.5

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------C--------
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------G--------  145 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------~--------  145 (182)
                      +..++++++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++.....      .        
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~~  409 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSKK  409 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCCC
Confidence            566799999998  899999999999999999999999999999889999999999987532110      0        


Q ss_pred             ----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          146 ----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       146 ----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                                      +..  . ..++|+++++++|+||+.|+++.++
T Consensus       410 ~~~v~~~~~l~~a~~~~~~--~-~~~vV~~~g~liGvvt~~dll~~l~  454 (454)
T TIGR01137       410 FIQIGEGEKLSDLSKFLEK--N-SSAIVTEEGKPIGVVTKIDLLSFLA  454 (454)
T ss_pred             CeEECCcCcHHHHHHHHHH--C-CeeEEEECCEEEEEEEHHHHHHhhC
Confidence                            111  1 2355666789999999999999874

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.00  E-value=2.6e-09  Score=77.14  Aligned_cols=81  Identities=20%  Similarity=0.336  Sum_probs=67.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc---------------ccC--------C-----
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD---------------SIS--------G-----  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~---------------~~~--------~-----  145 (182)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+++..               ...        .     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT   81 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence            678899999999999999999999999999889999999999987521               000        0     


Q ss_pred             -----------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 -----------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 -----------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                                 +...+...+||++++++++|++++.++++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence                       33556677899998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.99  E-value=4e-09  Score=75.70  Aligned_cols=81  Identities=31%  Similarity=0.433  Sum_probs=66.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC---CCcEEEEEeHHHHHhcccc----------------C--C-------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSI----------------S--G-------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~---~g~lvGiVt~~Dll~~~~~----------------~--~-------  145 (182)
                      ++.++.+++++.++++.|.+.++..+||+|+   +|+++|+++.+|+......                .  .       
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~l   82 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETPLSEVMTPREVLVVAPTGITLEEAN   82 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhccCCCHHHhcCCCceEEECCCCCCHHHHH
Confidence            5788999999999999999899999999997   7999999999998631110                0  0       


Q ss_pred             --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                        +...+...+||++++++++|+|++.++++
T Consensus        83 ~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          83 EILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             HHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence              33566678999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.99  E-value=1.7e-09  Score=77.10  Aligned_cols=80  Identities=30%  Similarity=0.402  Sum_probs=65.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc--------C--------C------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--------S--------G------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~--------~--------~------------  145 (182)
                      ++.++++++++.++++.|.+.+++.+||+|++|+++|+|+..|+++....        .        .            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD   81 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence            57889999999999999999899999999988999999999998752110        0        0            


Q ss_pred             ----CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ----SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ----~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                          +...+...+||+++ ++++|+++..++++
T Consensus        82 ~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          82 LAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             HHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence                33445567889987 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.99  E-value=2.9e-09  Score=95.34  Aligned_cols=93  Identities=24%  Similarity=0.327  Sum_probs=78.5

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC---CcEEEEEeHHHHHhccccC----------C----
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSIS----------G----  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~---g~lvGiVt~~Dll~~~~~~----------~----  145 (182)
                      .+.++.|.+  ++.++.+++++.++++.|.+++++.+||+|++   ++++|+|+.+|++......          .    
T Consensus        80 k~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~~~V  157 (450)
T TIGR01302        80 KRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEVITV  157 (450)
T ss_pred             ccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCCEEE
Confidence            466788888  89999999999999999999999999999987   7999999999987432100          0    


Q ss_pred             ------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                                  +...+...+||+|+++++.|+||++|+++.+.
T Consensus       158 ~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       158 PEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence                        33556678999999999999999999998753

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.97  E-value=2.8e-09  Score=78.91  Aligned_cols=80  Identities=31%  Similarity=0.475  Sum_probs=66.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc---------------------------c-CC
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS---------------------------I-SG  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~---------------------------~-~~  145 (182)
                      ++.++.+++++.++++.|.+.++..+||+|++|+++|+|+.+|+.+...                           . ..
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK   82 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence            6788999999999999999999999999998899999999999864311                           0 00


Q ss_pred             ------------------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ------------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ------------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                                              +...+...+||++ +|+++|++++.|+++
T Consensus        83 v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          83 VADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence                                    3456667789998 899999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.97  E-value=4.9e-09  Score=74.08  Aligned_cols=81  Identities=36%  Similarity=0.473  Sum_probs=66.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----------------C-C---------Cc
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----------------S-G---------SG  147 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----------------~-~---------~~  147 (182)
                      ++.++.+++++.++++.|.+.++..+||+|++|+++|+++.+++......                . .         +.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~   82 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETDLDKPVSEVMTPENLLTTVEGTSLEEALELLH   82 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecccCCCCHHHhcccCceEEecCCCCHHHHHHHHH
Confidence            67889999999999999999999999999988999999999997532111                0 0         33


Q ss_pred             cCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          148 RADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       148 ~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      ..+...+||++++++++|++++.++++
T Consensus        83 ~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          83 EHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            455667899998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.97  E-value=4e-09  Score=95.25  Aligned_cols=91  Identities=24%  Similarity=0.312  Sum_probs=77.6

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----------C---------
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----------S---------  144 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----------~---------  144 (182)
                      .++++|.+  ++.++.+++++.++++.|.+++++.+||+|++++++|+|+.+|+......          .         
T Consensus        88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v~v~~~~  165 (486)
T PRK05567         88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLVTVPEGT  165 (486)
T ss_pred             hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCEEECCCC
Confidence            57889998  99999999999999999999999999999989999999999998632110          0         


Q ss_pred             -------CCccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          145 -------GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       145 -------~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                             .+...+...+||+|+++++.|+||..|+++.+
T Consensus       166 sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        166 TLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence                   03345667899999999999999999999875

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.96  E-value=4.2e-09  Score=77.64  Aligned_cols=80  Identities=28%  Similarity=0.450  Sum_probs=66.2

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc------------------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI------------------------------  143 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~------------------------------  143 (182)
                      ++.++++++++.++++.|.+.+++.+||+|++|+++|+++..|+......                              
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE   81 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence            67889999999999999999999999999988999999999998742210                              


Q ss_pred             ----CC----------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          144 ----SG----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       144 ----~~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                          ..                +.+.+...+||+++ ++++|++++.|+++
T Consensus        82 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          82 EIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence                00                33455667899988 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.96  E-value=4.6e-09  Score=78.51  Aligned_cols=80  Identities=19%  Similarity=0.223  Sum_probs=66.5

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc-----------------------------cC
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-----------------------------IS  144 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~-----------------------------~~  144 (182)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..|+++...                             ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL   81 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence            6788999999999999999999999999998899999999999875321                             00


Q ss_pred             C------------------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          145 G------------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       145 ~------------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      .                        +...+...+||+++ ++++|+|++.++++
T Consensus        82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            0                        33455667899987 89999999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.96  E-value=7.7e-09  Score=75.74  Aligned_cols=81  Identities=22%  Similarity=0.330  Sum_probs=65.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc------------ccC-----------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD------------SIS-----------------  144 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~------------~~~-----------------  144 (182)
                      ++.++.+++++.++++.|.+++...+||+|++|+++|+++.+|+....            ...                 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~   81 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL   81 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence            568899999999999999999999999999889999999999986310            000                 


Q ss_pred             ----C---------CccCCCceeEeecCC-CcEEEEEeHHHHHH
Q 030127          145 ----G---------SGRADNSMFPEVDST-WKVHSTRCRSCLVK  174 (182)
Q Consensus       145 ----~---------~~~~~~~~~pVvd~~-~k~~GiVt~~dil~  174 (182)
                          .         |...+...+||+|++ ++++|+||..++++
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence                0         224556679999986 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.95  E-value=7.7e-09  Score=72.58  Aligned_cols=79  Identities=20%  Similarity=0.333  Sum_probs=65.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC------------------------CccC
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG------------------------SGRA  149 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------------------~~~~  149 (182)
                      ++.++.+++++.++++.|.+++...+||+| +|+++|+++.+|+........                        +...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   80 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHPNRLVADAMTREVVTISPEASLLEAKRLMEEK   80 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccccCCHHHHccCCCEEECCCCCHHHHHHHHHHc
Confidence            578899999999999999999999999998 699999999999875321100                        3456


Q ss_pred             CCceeEeecCCCcEEEEEeHHHHHH
Q 030127          150 DNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       150 ~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      +...+||+++ +++.|+++..+++.
T Consensus        81 ~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          81 KIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             CCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            6777999987 99999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.95  E-value=7.7e-09  Score=72.80  Aligned_cols=80  Identities=30%  Similarity=0.452  Sum_probs=65.9

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC------------------------CccC
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG------------------------SGRA  149 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------------------~~~~  149 (182)
                      ++.+++.+.++.++++.|.+.+...+||+|+ ++++|+++..|++.......                        +...
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   81 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKDPDETVEEIMSKDLVVAVPEMDIMDAARVMFRT   81 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccCccccHHHhCCCCCeEECCCCCHHHHHHHHHHh
Confidence            6788999999999999999888889999996 99999999999874311100                        3345


Q ss_pred             CCceeEeecCCCcEEEEEeHHHHHH
Q 030127          150 DNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       150 ~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      +...+||++++++++|+++..++++
T Consensus        82 ~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          82 GISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             CCCeEeEECCCCeEEEEEEHHHhhc
Confidence            6568899999999999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.95  E-value=7.4e-09  Score=73.62  Aligned_cols=80  Identities=24%  Similarity=0.392  Sum_probs=65.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhc-c------ccC--------C-------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL-D------SIS--------G-------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~-~------~~~--------~-------------  145 (182)
                      ++.++.+++++.++.+.|.+.+++.+||+|+ |+++|+++.+|++.. .      ...        .             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEA   80 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHH
Confidence            6788999999999999999999999999997 999999999998621 0      000        0             


Q ss_pred             ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                         +...+...+||++++++++|+++..++++
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          81 ARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             HHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence               33445567899988899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.95  E-value=9.1e-09  Score=72.79  Aligned_cols=80  Identities=23%  Similarity=0.314  Sum_probs=65.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc-----cCC-----------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-----ISG-----------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~-----~~~-----------------------  145 (182)
                      ++.++.+++++.++++.|.+.+...+||+|+ |+++|+++.+|+++...     ...                       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~   80 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDARQ   80 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHHHH
Confidence            5678999999999999999989999999996 99999999999875431     000                       


Q ss_pred             -CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 -SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 -~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                       +...+...+||+++++++.|++++.++++
T Consensus        81 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          81 LMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence             22345567899998899999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.94  E-value=8.4e-09  Score=73.23  Aligned_cols=79  Identities=24%  Similarity=0.355  Sum_probs=65.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----CC------------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----SG------------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----~~------------------------  145 (182)
                      ++.+++.+.++.++.+.|.+.+++.+||+|+ |+++|+++..|+......    ..                        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   81 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQEL   81 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHHHH
Confidence            6788999999999999999989999999997 999999999998753311    00                        


Q ss_pred             CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      +...+...+||++ +++++|++++.++++
T Consensus        82 ~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          82 MVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            3355667889998 789999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.94  E-value=6.6e-09  Score=93.57  Aligned_cols=95  Identities=22%  Similarity=0.258  Sum_probs=79.1

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC---------------
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---------------  144 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~---------------  144 (182)
                      ...+++.++|.+  +++++.+++++.++++.|.+++++.+||+| +++++|+||.+|+.......               
T Consensus        85 v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~~~~~V~dIMt~~litv~~  161 (475)
T TIGR01303        85 VAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVDRFTQVRDIMSTDLVTAPA  161 (475)
T ss_pred             Hhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCCCCCCHHHHccCCceEeCC
Confidence            446788899998  899999999999999999999999999988 57999999999986432110               


Q ss_pred             ---------CCccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          145 ---------GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       145 ---------~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                               .|...+...+||+|++++++|+||..|+++...
T Consensus       162 ~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       162 DTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI  203 (475)
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence                     034567778899999999999999999998654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.93  E-value=7.6e-09  Score=74.02  Aligned_cols=80  Identities=16%  Similarity=0.282  Sum_probs=63.4

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcC-CCEEEEeeCCCcEEEEEeHHHHHhcccc------CC---------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSI------SG---------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~-~~~lPVvD~~g~lvGiVt~~Dll~~~~~------~~---------------------  145 (182)
                      ++.++.++.++.++++.|.+++ ...++|+| +|+++|+++.+|+++....      ..                     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~   80 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF   80 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence            5678999999999999998888 66777777 6999999999998853210      00                     


Q ss_pred             -----CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 -----SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 -----~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                           +...+...+||++++++++|++++.++++
T Consensus        81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence                 22334567899998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.93  E-value=1.2e-08  Score=71.19  Aligned_cols=81  Identities=33%  Similarity=0.502  Sum_probs=67.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC--------------C--------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------------G--------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------------~--------------  145 (182)
                      ++.++.+++++.++++.|.+.+...+||+|++++++|+++.+|+.......              .              
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAA   81 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHHHH
Confidence            567889999999999999999999999999889999999999987533210              0              


Q ss_pred             --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                        +...+...+||+++++++.|+++..++++
T Consensus        82 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          82 ELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence              22445678899999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.93  E-value=9.3e-09  Score=72.98  Aligned_cols=79  Identities=27%  Similarity=0.349  Sum_probs=64.9

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc------CC----------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI------SG----------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~------~~----------------------  145 (182)
                      ++.+++++++++++.+.|.+.+++.+||+|+ |+++|+++.+|++.....      ..                      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHHH
Confidence            6788999999999999999989999999997 999999999998752110      00                      


Q ss_pred             --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                        +...+...+||+++ +++.|++++.|+++
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence              33455667889987 89999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.93  E-value=1e-08  Score=73.49  Aligned_cols=80  Identities=31%  Similarity=0.362  Sum_probs=66.5

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----------------C--------C----
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----------------S--------G----  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----------------~--------~----  145 (182)
                      ++.++.+++++.++++.|.+.++..+||+|+ |+++|+++.+|++.....                .        .    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence            5788999999999999999999999999997 999999999998754211                0        0    


Q ss_pred             ------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                                  +...+...+||++++++++|++++.++++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence                        33456667899998899999999999976

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.93  E-value=8.6e-09  Score=72.91  Aligned_cols=77  Identities=23%  Similarity=0.205  Sum_probs=63.9

Q ss_pred             EEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC--------C---------------CccCCCc
Q 030127           96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------G---------------SGRADNS  152 (182)
Q Consensus        96 ~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------~---------------~~~~~~~  152 (182)
                      .++.+++++.++++.|.+.+++.+||+|+ |+++|+++.+|+++.....        .               +...+..
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~   82 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATYGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTR   82 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcccchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcc
Confidence            57889999999999999999999999997 9999999999987532110        0               3456667


Q ss_pred             eeEeecCCCcEEEEEeHHHHHH
Q 030127          153 MFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       153 ~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      .+||++ +++++|+++..++++
T Consensus        83 ~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          83 WCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             eEEEEE-CCEEEEEEEHHHhhc
Confidence            899997 589999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.93  E-value=3e-09  Score=88.16  Aligned_cols=85  Identities=33%  Similarity=0.343  Sum_probs=71.9

Q ss_pred             ccccccccccCCC-eEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-----C--------C--
Q 030127           82 VYTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-----S--------G--  145 (182)
Q Consensus        82 ~~~V~diM~~~~~-~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-----~--------~--  145 (182)
                      .++|+++|.+  + +.++.+++++.++++.|.+.+++.+||+|++|+++|+|+.+|+.+....     .        .  
T Consensus       154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~  231 (268)
T TIGR00393       154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK  231 (268)
T ss_pred             hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence            4699999998  7 9999999999999999999999999999988999999999998754211     0        0  


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEe
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRC  168 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt  168 (182)
                                    +...+...+||++++++++|+|.
T Consensus       232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                          34566778999998899999984

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.92  E-value=7.7e-09  Score=73.52  Aligned_cols=80  Identities=29%  Similarity=0.283  Sum_probs=64.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc-----c--CC---------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-----I--SG---------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~-----~--~~---------------------  145 (182)
                      ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+|+.+|++....     .  ..                     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~   80 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEA   80 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHH
Confidence            5788999999999999999999999999997 99999999999863110     0  00                     


Q ss_pred             ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                         +...+...+||++++++++|+++..+++.
T Consensus        81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          81 LHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             HHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence               22345567889998899999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.91  E-value=1.2e-08  Score=71.89  Aligned_cols=78  Identities=29%  Similarity=0.360  Sum_probs=63.6

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------C----------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------G----------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------~----------------------  145 (182)
                      ++.++.+++++.++++.|.+++++.+||+|+ |+++|+++.+|+.+.....      .                      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   80 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS   80 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence            5788999999999999999999999999997 9999999999987642110      0                      


Q ss_pred             --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                        +..  ....||++++++++|++++.|+++
T Consensus        81 ~~~~~--~~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          81 ELLDR--GNVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             HHHHh--CCceeEEecCCeEEEEEeHHHhhc
Confidence              122  234688888899999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.90  E-value=6.5e-09  Score=94.20  Aligned_cols=94  Identities=16%  Similarity=0.106  Sum_probs=76.0

Q ss_pred             cccccccccC-CCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC---CCcEEEEEeHHHHHhcccc---------------
Q 030127           83 YTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSI---------------  143 (182)
Q Consensus        83 ~~V~diM~~~-~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~---~g~lvGiVt~~Dll~~~~~---------------  143 (182)
                      .+|+++|... .++.++.+++++.+|++.|.+++++.+||+|+   +|+++|+||.+|+......               
T Consensus        94 ~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~  173 (502)
T PRK07107         94 RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKL  173 (502)
T ss_pred             HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCe
Confidence            3578888621 15679999999999999999999999999996   5899999999998632100               


Q ss_pred             ----C---------CCccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          144 ----S---------GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       144 ----~---------~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                          .         .|.+.+...+||+|++++++|+||+.|+++..
T Consensus       174 itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        174 VTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence                0         04466778899999999999999999998863

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.90  E-value=1.3e-09  Score=89.25  Aligned_cols=99  Identities=22%  Similarity=0.291  Sum_probs=86.2

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccCC-------------
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG-------------  145 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~~-------------  145 (182)
                      ...+.|.|+|.++.+..+++.+.++.+.+..|.+..++++||+.++ +.+.||+-.+||+.......             
T Consensus        64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~lLRPav  143 (293)
T COG4535          64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLRPAV  143 (293)
T ss_pred             HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHhcccce
Confidence            3567999999999899999999999999999999999999999655 89999999999998644321             


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                    +......|..|+|+.|.+.|.||.+|+++.+.+
T Consensus       144 ~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         144 VVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             ecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhc
Confidence                          445667789999999999999999999998754

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.90  E-value=1.5e-08  Score=74.03  Aligned_cols=81  Identities=26%  Similarity=0.361  Sum_probs=64.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc---------------------------CC-
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---------------------------SG-  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~---------------------------~~-  145 (182)
                      ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+......                           .. 
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV   81 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence            57789999999999999999999999999988999999999998743100                           00 


Q ss_pred             ---------------CccCCCceeEeec--CCCcEEEEEeHHHHHH
Q 030127          146 ---------------SGRADNSMFPEVD--STWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ---------------~~~~~~~~~pVvd--~~~k~~GiVt~~dil~  174 (182)
                                     +...+...+||++  ++++++|+|+++++++
T Consensus        82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence                           2234556677774  4689999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.90  E-value=1.5e-08  Score=71.96  Aligned_cols=79  Identities=18%  Similarity=0.147  Sum_probs=64.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC--------------C--------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------------G--------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------------~--------------  145 (182)
                      ++++++++++++++++.|.+.+...++|+|+ |+++|+++.+|+++.....              .              
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL   80 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence            5678899999999999999999999999997 8999999999987542110              0              


Q ss_pred             --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                        +...+...+||+++ ++++|+++..++++
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence              34556677899875 89999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.88  E-value=1.5e-08  Score=91.87  Aligned_cols=90  Identities=16%  Similarity=0.165  Sum_probs=74.6

Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC---CCcEEEEEeHHHHHhcccc----------C--------
Q 030127           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSI----------S--------  144 (182)
Q Consensus        86 ~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~---~g~lvGiVt~~Dll~~~~~----------~--------  144 (182)
                      +..|.+  +++++.+++++.++++.|.+++++.+||+|+   +|+++|+||.+|+......          .        
T Consensus       103 ~~gmi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt~~~~lvtv~~  180 (505)
T PLN02274        103 RVGFVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPA  180 (505)
T ss_pred             cccccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhccCCCcEEECC
Confidence            344777  8999999999999999999999999999997   4899999999998642110          0        


Q ss_pred             ---------CCccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          145 ---------GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       145 ---------~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                               .+...+...+||+|++++++|+||+.|+++.+.
T Consensus       181 ~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        181 GIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                     034567778999999999999999999998874

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.87  E-value=1.9e-08  Score=72.62  Aligned_cols=80  Identities=25%  Similarity=0.272  Sum_probs=66.2

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc----------------c--------CC----
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS----------------I--------SG----  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~----------------~--------~~----  145 (182)
                      ++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++.+|+++...                .        ..    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV   80 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence            5788999999999999999999999999996 99999999999864210                0        00    


Q ss_pred             ------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                                  +...+...+||++++++++|++++.++++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence                        33556678899998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.85  E-value=1.3e-08  Score=92.16  Aligned_cols=91  Identities=23%  Similarity=0.247  Sum_probs=75.5

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC---CcEEEEEeHHHHHhccccC-----------C----
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSIS-----------G----  145 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~---g~lvGiVt~~Dll~~~~~~-----------~----  145 (182)
                      ..++.|..  ++.++++++++.+++++|.+++++.+||+|++   ++++|+|+.+|+.......           .    
T Consensus        97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~~lvtv  174 (495)
T PTZ00314         97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREKLVVG  174 (495)
T ss_pred             cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcCCceEe
Confidence            45677888  89999999999999999999999999999974   8999999999985321110           0    


Q ss_pred             ------------CccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                                  +...+...+||+|++++++|+||++|+++..
T Consensus       175 ~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        175 NTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             CCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence                        3345667899999999999999999999774

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.84  E-value=6.9e-09  Score=89.82  Aligned_cols=101  Identities=19%  Similarity=0.197  Sum_probs=87.8

Q ss_pred             CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccCC-----------
Q 030127           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG-----------  145 (182)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~~-----------  145 (182)
                      ..+++++|.|+|.++.++..+..+++.+++++.+.+..+.++||..++ ++++|++..+|++++.....           
T Consensus       195 LDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a  274 (423)
T COG4536         195 LDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAA  274 (423)
T ss_pred             cccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHh
Confidence            356788999999999899999999999999999999999999999655 78999999999997654322           


Q ss_pred             ------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                        |..++.....|||+.|.+.|+||.+|+++.+-+
T Consensus       275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVG  325 (423)
T COG4536         275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVG  325 (423)
T ss_pred             cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhc
Confidence                              446666777899999999999999999998754

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.84  E-value=2.4e-08  Score=71.83  Aligned_cols=80  Identities=29%  Similarity=0.483  Sum_probs=65.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc-------------c--CC-------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-------------I--SG-------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~-------------~--~~-------------  145 (182)
                      ++.++++++++.+|++.|.+.+++.+||+|++|+++|+++..|+.....             .  ..             
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~   81 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVH   81 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEEC
Confidence            5788999999999999999999999999998899999999999875321             0  00             


Q ss_pred             -----------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 -----------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 -----------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                                 +...+...+||+++ ++++|+++..++++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          82 PLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence                       33455667899987 89999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.84  E-value=1.8e-08  Score=71.95  Aligned_cols=80  Identities=21%  Similarity=0.254  Sum_probs=66.2

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC---CCcEEEEEeHHHHHhccc--c-CC----------------CccCCC
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDS--I-SG----------------SGRADN  151 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~---~g~lvGiVt~~Dll~~~~--~-~~----------------~~~~~~  151 (182)
                      ....+.+++++.++.+.|.+.++..+||+|+   +|+++|+|+.+|+.....  . ..                |...+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~~m~~~~~~v~~~~~l~~~~~~~~~~~~   82 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKNYIDPSPFTVSPRTSLEKVHQLFRKLGL   82 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHHhccCCCceECCCCcHHHHHHHHHHcCC
Confidence            5678899999999999999998889999998   699999999999875331  1 10                446677


Q ss_pred             ceeEeecCCCcEEEEEeHHHHHH
Q 030127          152 SMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       152 ~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      ..+||+ ++++++|++++.++++
T Consensus        83 ~~~pVv-~~~~~~Gvvt~~dl~~  104 (105)
T cd04591          83 RHLLVV-DEGRLVGIITRKDLLK  104 (105)
T ss_pred             CEEEEE-ECCeEEEEEEhhhhhc
Confidence            789999 4789999999999876

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.82  E-value=4.2e-08  Score=69.23  Aligned_cols=80  Identities=26%  Similarity=0.345  Sum_probs=64.9

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC--------C----------------CccC
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------G----------------SGRA  149 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------~----------------~~~~  149 (182)
                      ++.++.++.+++++++.|.+.+++.+||+|++++++|+++.++++......        .                +...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   81 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPEEEQLALLMTRDPPTVSPDDDVKEAAKLMVEN   81 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccccchHHHHhcCCCceECCCCCHHHHHHHHHHc
Confidence            578889999999999999998999999999889999999999987432110        0                2345


Q ss_pred             CCceeEeecCCCcEEEEEeHHHHHH
Q 030127          150 DNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       150 ~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      +...+||+++ +++.|+++..++++
T Consensus        82 ~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          82 NIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             CCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            5567899985 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.81  E-value=9.5e-09  Score=92.77  Aligned_cols=98  Identities=17%  Similarity=0.221  Sum_probs=84.6

Q ss_pred             CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC------------
Q 030127           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG------------  145 (182)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------  145 (182)
                      .++-..+|.++|+.  ++++|++..++++|.+.|.+.+.+.+.|+|+++...||||.+|+.......+            
T Consensus       144 ~e~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT  221 (610)
T COG2905         144 SEFILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT  221 (610)
T ss_pred             chHHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence            34455789999999  9999999999999999999999999999999999999999999986544322            


Q ss_pred             ------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                        |...+...+||. ++|+.+|++|..||+...+.
T Consensus       222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~-e~gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVT-EDGQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             cCceeecCcchHHHHHHHHHHhCCceeeee-cCCeeeEEeeHHHHHHhhCC
Confidence                              457788888877 57999999999999998874

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.80  E-value=1.5e-08  Score=72.64  Aligned_cols=55  Identities=25%  Similarity=0.347  Sum_probs=51.5

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .++.++|..  ++.++.+++++.+|++.|.+++...+||+|++|+++|+||.+|+++
T Consensus        56 ~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          56 LKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             cChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            469999988  8899999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.80  E-value=5e-08  Score=69.26  Aligned_cols=79  Identities=27%  Similarity=0.328  Sum_probs=63.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc-------cCC---------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-------ISG---------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~-------~~~---------------------  145 (182)
                      ++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|++....       ...                     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   80 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEA   80 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHH
Confidence            5788999999999999999999999999995 59999999999876321       000                     


Q ss_pred             ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                         +...+...+||++++ +++|++++.++++
T Consensus        81 ~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          81 AKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence               234555678999875 9999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.79  E-value=4.3e-08  Score=70.55  Aligned_cols=79  Identities=24%  Similarity=0.350  Sum_probs=65.1

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc---------------C-C------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---------------S-G------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~---------------~-~------------  145 (182)
                      ++.++.+++++.++++.|.+.++..+||+|+ |+++|+++..+++.....               . .            
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI   80 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence            5788999999999999999999999999996 999999999998753110               0 0            


Q ss_pred             ------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                                  +.+.+...+||+++ ++++|+++..++++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence                        33556677899988 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.79  E-value=5.2e-08  Score=69.20  Aligned_cols=79  Identities=19%  Similarity=0.228  Sum_probs=62.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-------CC---------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-------SG---------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-------~~---------------------  145 (182)
                      ++.++.+++++.++++.|.+++...++|.+ +|+++|+++.+|+++....       ..                     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a   80 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEV   80 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHH
Confidence            568899999999999999888887777776 5999999999998743211       00                     


Q ss_pred             ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                         +...+...+||++ +++++|++|+.++++
T Consensus        81 ~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          81 RRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             HHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence               3345667789998 489999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.79  E-value=5.9e-08  Score=69.20  Aligned_cols=84  Identities=31%  Similarity=0.437  Sum_probs=69.6

Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-------------C--------
Q 030127           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------G--------  145 (182)
Q Consensus        87 diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-------------~--------  145 (182)
                      ++|.+  ++.++.++.++.+|...|.++++..+||++. ++++|++|.+|+..+....             .        
T Consensus         3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~~~   79 (117)
T COG0517           3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDPDT   79 (117)
T ss_pred             ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECCCC
Confidence            34445  8999999999999999999999999999984 4899999999998654311             0        


Q ss_pred             --------Ccc-CCCceeEeecCCC-cEEEEEeHHHHH
Q 030127          146 --------SGR-ADNSMFPEVDSTW-KVHSTRCRSCLV  173 (182)
Q Consensus       146 --------~~~-~~~~~~pVvd~~~-k~~GiVt~~dil  173 (182)
                              +.. .+...+||+++++ ++.|+++..|++
T Consensus        80 ~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          80 PLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             CHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                    334 5788999999986 999999999863

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.77  E-value=3e-08  Score=90.46  Aligned_cols=56  Identities=34%  Similarity=0.478  Sum_probs=52.8

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..+|+++|.+  ++.++++++++.+|++.|.+++++.+||+|++|+++|+|+.+|+.+
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~  122 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLAR  122 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHH
Confidence            3689999998  9999999999999999999999999999998899999999999875

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.75  E-value=6.9e-08  Score=69.29  Aligned_cols=80  Identities=24%  Similarity=0.227  Sum_probs=62.2

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcC-CCEEEEeeCCCcEEEEEeHHHHHhcccc--------C-C------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSI--------S-G------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~-~~~lPVvD~~g~lvGiVt~~Dll~~~~~--------~-~------------------  145 (182)
                      ++.++++++++.++++.|.+.+ ++.+||+|+ |+++|+++.+|++.....        . .                  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~   80 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL   80 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence            5678899999999999998887 889999998 999999999998743210        0 0                  


Q ss_pred             ------CccCCC---ceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 ------SGRADN---SMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 ------~~~~~~---~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                            +...+.   ...++++++++++|+|+..++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence                  222221   23467888899999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.75  E-value=3.7e-08  Score=88.08  Aligned_cols=97  Identities=29%  Similarity=0.283  Sum_probs=81.9

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHc-----CCCEEEEeeCCCcEEEEEeHHHHHhccccCC---------
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISG---------  145 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~-----~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~---------  145 (182)
                      ...-+++.+|+.  ++++++++.|+.++++.+++.     .+..+.|+|++++++|+++.++++.......         
T Consensus       129 y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~~~~i~~im~~~~  206 (451)
T COG2239         129 YPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEPDELLKDLMEDDV  206 (451)
T ss_pred             CChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCcHhHHHHHhcccc
Confidence            345589999999  999999999999999999854     3577899999999999999999984332210         


Q ss_pred             ---------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                     +.+++....||||++++++|++|..|+++.+..
T Consensus       207 ~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         207 VSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             eeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence                           557788889999999999999999999987754

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.73  E-value=3.6e-08  Score=70.79  Aligned_cols=57  Identities=18%  Similarity=0.413  Sum_probs=52.8

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...+++++|..  ++.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+++
T Consensus        57 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          57 CTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             ccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            34679999988  8999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.70  E-value=2.5e-08  Score=71.24  Aligned_cols=56  Identities=27%  Similarity=0.440  Sum_probs=51.7

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+  .+.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            3578999988  8899999999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.70  E-value=4.1e-08  Score=71.35  Aligned_cols=55  Identities=29%  Similarity=0.482  Sum_probs=51.8

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .+++++|.+  ++.++.+++++.++++.|.+.++..+||+|++|+++|+|+.+|+..
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            679999998  8999999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.69  E-value=1.1e-07  Score=71.33  Aligned_cols=45  Identities=38%  Similarity=0.606  Sum_probs=41.9

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++.+|+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~   46 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILK   46 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHH
Confidence            6788999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.66  E-value=6.3e-08  Score=68.67  Aligned_cols=56  Identities=32%  Similarity=0.496  Sum_probs=52.2

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..+++++|..  ++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            4579999988  8999999999999999999999999999998899999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.65  E-value=8.4e-08  Score=68.13  Aligned_cols=58  Identities=22%  Similarity=0.428  Sum_probs=53.0

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~  140 (182)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+++.
T Consensus        51 ~~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          51 PDTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             CcchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            34579999988  89999999999999999999999999999988999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.64  E-value=4.7e-08  Score=81.02  Aligned_cols=64  Identities=19%  Similarity=0.311  Sum_probs=58.7

Q ss_pred             CCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        77 ~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      .....+.+|+++|.+  ++++++.++.+.||+++|..++++++.|+|.+|+++|+||..|++....
T Consensus       228 a~g~~~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         228 ANGNLDAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             HcCCccccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence            444567899999999  9999999999999999999999999999999999999999999997643

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.61  E-value=1.4e-07  Score=66.31  Aligned_cols=56  Identities=27%  Similarity=0.537  Sum_probs=51.5

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...+.++|.+  .+.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+++
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            4478999988  8899999999999999999999999999998899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.60  E-value=1.3e-07  Score=68.30  Aligned_cols=57  Identities=37%  Similarity=0.622  Sum_probs=52.6

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..|+++
T Consensus        67 ~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            34578999988  8999999999999999999999999999998899999999999975

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.57  E-value=1.7e-07  Score=66.87  Aligned_cols=56  Identities=25%  Similarity=0.467  Sum_probs=50.7

Q ss_pred             ccccccccccCCCeEEEcCC--CCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPT--TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~--~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+  ++.++.++  +++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            3578899988  78888887  78999999999999999999998899999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.56  E-value=2.1e-07  Score=67.52  Aligned_cols=52  Identities=19%  Similarity=0.288  Sum_probs=47.5

Q ss_pred             ccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        86 ~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .++|..  ++.++.+++++.+|++.|.+++...+||+|++|+++|+||.+|+..
T Consensus        71 ~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~  122 (123)
T cd04627          71 LTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL  122 (123)
T ss_pred             cccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence            456777  8999999999999999999999999999998899999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.56  E-value=9.4e-08  Score=81.38  Aligned_cols=59  Identities=27%  Similarity=0.362  Sum_probs=54.3

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ...++.++|.+  ++.++.+++++.+|++.|.+++...+||+|++|+++|+||.+|++++.
T Consensus       261 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~~  319 (321)
T PRK11543        261 LTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAG  319 (321)
T ss_pred             cCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhcc
Confidence            34578999998  899999999999999999999999999999889999999999998764

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.55  E-value=2.2e-07  Score=65.01  Aligned_cols=68  Identities=28%  Similarity=0.448  Sum_probs=55.2

Q ss_pred             cceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           69 GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        69 g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      |.+...++.......++.++|.+  ++.++.+++++.++++.|.+++...+||+|+ |+++|+||.+|++.
T Consensus        37 Giv~~~~l~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          37 GIITSRDVRRAHPNRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             EEEehHHhhcccccCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            33444443222234478999988  8999999999999999999999999999996 99999999999863

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.55  E-value=2e-07  Score=67.32  Aligned_cols=59  Identities=22%  Similarity=0.418  Sum_probs=51.2

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC---CcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~---g~lvGiVt~~Dll~  139 (182)
                      ...+++++|....++.++.+++++.++++.|.++++..+||+|++   |+++|+||.+|+.+
T Consensus        56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            355788899732268899999999999999999999999999977   69999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.55  E-value=1.7e-07  Score=67.05  Aligned_cols=56  Identities=23%  Similarity=0.386  Sum_probs=51.4

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...++.++|..  ++.++++++++.++++.|.+.+...+||+|+ |+++|+|+..|+++
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          58 DRVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             CccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            34578999988  8999999999999999999999999999996 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.54  E-value=1.7e-07  Score=67.57  Aligned_cols=57  Identities=32%  Similarity=0.538  Sum_probs=52.1

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...++.++|.+  ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            34578899987  8999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.52  E-value=1.6e-07  Score=66.68  Aligned_cols=55  Identities=38%  Similarity=0.597  Sum_probs=50.5

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+  ++.++.+++++.++++.|.+++...+||+|+ |+++|+||..|++.
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            3478899988  8999999999999999999999999999997 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.52  E-value=1.7e-07  Score=66.48  Aligned_cols=56  Identities=32%  Similarity=0.447  Sum_probs=51.3

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+  ++.++.+++++.++++.|.+++...+||+|++|+++|+++.+|+++
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            4578899988  8999999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.51  E-value=1.4e-07  Score=66.88  Aligned_cols=55  Identities=27%  Similarity=0.439  Sum_probs=51.0

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .++.++|..  ++.++.+++++.++++.|.+++...+||+|++|+++|+++.+|+..
T Consensus        56 ~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            478999988  8999999999999999999999999999997799999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.51  E-value=3.4e-07  Score=64.93  Aligned_cols=55  Identities=31%  Similarity=0.462  Sum_probs=50.6

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|..  ++.++.+++++.++++.|.+++...+||+| +|+++|+||.+|+++
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            3579999988  889999999999999999999999999999 699999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.51  E-value=1.5e-07  Score=66.70  Aligned_cols=55  Identities=35%  Similarity=0.541  Sum_probs=51.7

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC-CCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~-~g~lvGiVt~~Dll~  139 (182)
                      .++.++|.+  ++.++.+++++.++++.|.+.+...+||+|+ +|+++|+++.+|++.
T Consensus        58 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          58 VVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             EEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            689999998  8999999999999999999999999999997 799999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=3.3e-07  Score=64.84  Aligned_cols=45  Identities=22%  Similarity=0.370  Sum_probs=42.6

Q ss_pred             eEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHh
Q 030127           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA  139 (182)
Q Consensus        95 ~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~  139 (182)
                      +.++.+++++.+|++.|.+++++.+||+|++ |+++|+||.+|++.
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            6889999999999999999999999999987 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=4.3e-07  Score=64.52  Aligned_cols=57  Identities=23%  Similarity=0.410  Sum_probs=52.1

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus        56 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            34578999988  8999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.49  E-value=2.8e-07  Score=65.81  Aligned_cols=58  Identities=29%  Similarity=0.461  Sum_probs=50.7

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+...+.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            4578899975224678999999999999999999999999998899999999999865

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.49  E-value=4.1e-07  Score=64.46  Aligned_cols=55  Identities=38%  Similarity=0.606  Sum_probs=51.4

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .++.++|.+  ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+++
T Consensus        59 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          59 LPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             CCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            479999998  8899999999999999999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.49  E-value=2.2e-07  Score=65.56  Aligned_cols=55  Identities=42%  Similarity=0.636  Sum_probs=50.9

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .++.++|.+  ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+++
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            367889988  8999999999999999999999999999998899999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.48  E-value=3.3e-07  Score=65.01  Aligned_cols=55  Identities=29%  Similarity=0.379  Sum_probs=51.1

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .++.++|.+  .+.++.+++++.++++.|.+++...+||+|++|+++|+|+..|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            578999988  8899999999999999999999999999998899999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.48  E-value=4.2e-07  Score=64.96  Aligned_cols=56  Identities=39%  Similarity=0.748  Sum_probs=51.9

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+  ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus        66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            4578899988  8999999999999999999999999999998899999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.48  E-value=4.8e-07  Score=64.67  Aligned_cols=55  Identities=24%  Similarity=0.452  Sum_probs=50.8

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC--CcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~--g~lvGiVt~~Dll~  139 (182)
                      .++.++|.+  ++.++.+++++.++++.|.+++...+||+|++  |+++|+|+.+|+++
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          58 SAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             ccHHHhccC--CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            458889988  89999999999999999999999999999987  79999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.48  E-value=2.7e-07  Score=82.62  Aligned_cols=73  Identities=16%  Similarity=0.297  Sum_probs=61.1

Q ss_pred             cceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           69 GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        69 g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      |.+..+++.......+++++|++  ++.++.+++++.+|++.|.++++..+||+|++|+++|+||.+|+++....
T Consensus       181 GvV~l~dLl~a~~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~  253 (449)
T TIGR00400       181 GVLSIRDLILAKPEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS  253 (449)
T ss_pred             EEEEHHHHhcCCCCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence            44445554333345689999998  89999999999999999999999999999999999999999999976544

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.48  E-value=1.5e-07  Score=69.58  Aligned_cols=56  Identities=38%  Similarity=0.481  Sum_probs=51.6

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...++.++|.+  ++..+.+++++.++++.|.+.+.+.+||+| +|+++|+|+.+|+++
T Consensus        79 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          79 HGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             cCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            34579999988  899999999999999999999999999999 899999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.48  E-value=3.4e-07  Score=64.36  Aligned_cols=55  Identities=27%  Similarity=0.547  Sum_probs=51.2

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .++.++|.+  ++..+.+++++.++++.|.+.+...+||+|++|+++|+++.+|+++
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            478899988  8999999999999999999999999999998899999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.47  E-value=5.5e-07  Score=63.21  Aligned_cols=54  Identities=19%  Similarity=0.274  Sum_probs=50.0

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ++.++|.+  .+.++.+++++.++++.|.+++...+||+|++|+++|+|+.+++++
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            58899988  7888999999999999999999999999998899999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.47  E-value=5.3e-07  Score=64.87  Aligned_cols=57  Identities=39%  Similarity=0.612  Sum_probs=52.3

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...++.++|..  ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|++.
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            45678999988  8999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.47  E-value=5.1e-07  Score=65.20  Aligned_cols=51  Identities=18%  Similarity=0.384  Sum_probs=45.9

Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        87 diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ++|..  ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        69 ~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          69 SQDFE--GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             ccCCC--CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            34445  6789999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.46  E-value=3.5e-07  Score=64.55  Aligned_cols=57  Identities=35%  Similarity=0.491  Sum_probs=52.1

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            35678999988  8999999999999999999999999999998899999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.46  E-value=2.6e-07  Score=67.55  Aligned_cols=57  Identities=23%  Similarity=0.313  Sum_probs=48.2

Q ss_pred             cccccccccccCCCeEEE------cCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVV------KPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v------~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~  139 (182)
                      ...+++++|.+  +...+      .+++++.++++.|.+++...+||+|++ |+++|+||.+|+++
T Consensus        62 ~~~~v~~im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTP--KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            45679999987  54333      368899999999999999999999987 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.45  E-value=4.6e-07  Score=82.26  Aligned_cols=62  Identities=32%  Similarity=0.368  Sum_probs=55.7

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ..+.+|+++|++..+++++.+++++.+|++.|.++++..+||+|++|+++|+||.+|+++..
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            34568999999644789999999999999999999999999999889999999999998754

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.45  E-value=6.4e-07  Score=63.08  Aligned_cols=56  Identities=38%  Similarity=0.519  Sum_probs=49.8

Q ss_pred             ccccccccccCCCeEEEcC-CCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKP-TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~-~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|..  .+..+.+ ++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus        53 ~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            4578999987  6676666 999999999999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.45  E-value=3.7e-07  Score=68.16  Aligned_cols=55  Identities=31%  Similarity=0.583  Sum_probs=50.8

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..+++++|.+  ++..+.+++++.++++.|.+.+...+||+++ |+++|+|+.+|+++
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            4579999988  8899999999999999999999999999996 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.45  E-value=5.5e-07  Score=65.07  Aligned_cols=56  Identities=41%  Similarity=0.723  Sum_probs=51.6

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+  ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus        69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            3478899988  8999999999999999999999999999997799999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.43  E-value=5.1e-07  Score=81.53  Aligned_cols=59  Identities=31%  Similarity=0.417  Sum_probs=54.6

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ..+++++|++  ++.++++++++.+|++.|.++++..+||+|++|+++|+||.+||++...
T Consensus       147 ~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        147 FTQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             CCCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            3579999998  9999999999999999999999999999998899999999999987543

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.43  E-value=5.4e-07  Score=81.32  Aligned_cols=72  Identities=22%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             cceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           69 GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        69 g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      |.+...++.......+++++|++  +++++.+++++.+|+++|.++++..+||+|++|+++|+||.+||++...
T Consensus       132 GIVT~rDL~~~~~~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       132 GLVTDSDLLGVDRFTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI  203 (475)
T ss_pred             EEEEHHHhhcCCCCCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence            44544444333344679999998  9999999999999999999999999999998899999999999987543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.43  E-value=7.8e-07  Score=62.96  Aligned_cols=56  Identities=41%  Similarity=0.673  Sum_probs=51.7

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+...+||+| +|+++|+||.+|+++
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            45689999988  899999999999999999999999999999 899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.42  E-value=6.3e-07  Score=64.18  Aligned_cols=55  Identities=35%  Similarity=0.455  Sum_probs=49.4

Q ss_pred             cccccccccCCCeEEEcC--CCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKP--TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~--~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .+++++|..  ...++..  ++++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus        57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            468899988  6777755  999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.42  E-value=3.5e-07  Score=78.16  Aligned_cols=58  Identities=28%  Similarity=0.331  Sum_probs=53.2

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ...+|+++|++  ++.++.+++++.+|++.|.++++..+||+| +|+++|+||.+|+++..
T Consensus       267 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~~  324 (326)
T PRK10892        267 RQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRAG  324 (326)
T ss_pred             ccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhcc
Confidence            34689999998  899999999999999999999999999998 68999999999998753

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=8.1e-07  Score=62.94  Aligned_cols=54  Identities=44%  Similarity=0.621  Sum_probs=50.5

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ++.++|..  ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus        59 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          59 TVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             CHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            58999988  8999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=9.5e-07  Score=62.37  Aligned_cols=55  Identities=40%  Similarity=0.600  Sum_probs=50.8

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+  ++.++.+++++.++++.|.+.+...+||+++ |+++|+|+.+|+++
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            4579999988  8999999999999999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=7e-07  Score=63.39  Aligned_cols=55  Identities=38%  Similarity=0.607  Sum_probs=50.8

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+  ++.++.+++++.++++.|.+++...+||+|+ |+++|+||.+|+++
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            4578999988  8899999999999999999999999999996 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.40  E-value=5.8e-07  Score=66.11  Aligned_cols=53  Identities=36%  Similarity=0.605  Sum_probs=49.8

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ++.++|.+  ++..+.+++++.++++.|.+.+...+||+|+ |+++|++|.+|+++
T Consensus        79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            78899988  8999999999999999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.40  E-value=9.6e-07  Score=62.47  Aligned_cols=55  Identities=40%  Similarity=0.569  Sum_probs=50.9

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|..  ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++.+|+++
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            3578999988  8999999999999999999999999999996 99999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.38  E-value=8e-07  Score=63.26  Aligned_cols=54  Identities=28%  Similarity=0.538  Sum_probs=48.6

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+  ++.++.+++++.++++.|.+.+  .+||+|++|+++|++|.+|+++
T Consensus        62 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          62 DLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            4578999998  8999999999999999998765  5899998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.37  E-value=1.2e-06  Score=61.87  Aligned_cols=55  Identities=22%  Similarity=0.412  Sum_probs=50.9

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .++.++|..  ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            578889987  8999999999999999999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=1.4e-06  Score=63.53  Aligned_cols=51  Identities=22%  Similarity=0.420  Sum_probs=46.8

Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        87 diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      +.|..  ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            46666  7899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.35  E-value=1.3e-06  Score=62.86  Aligned_cols=55  Identities=36%  Similarity=0.582  Sum_probs=51.2

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .++.++|..  ++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            468899988  8999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.34  E-value=1.7e-06  Score=61.31  Aligned_cols=56  Identities=29%  Similarity=0.388  Sum_probs=50.8

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...++.++|.+  ++..+.+++++.++++.|.+++...+||+|+ |+++|+|+.+|+++
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            34578899988  8999999999999999999999999999984 89999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.34  E-value=9.9e-07  Score=63.36  Aligned_cols=56  Identities=38%  Similarity=0.657  Sum_probs=51.3

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...++.++|..  ++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            34578899988  8999999999999999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.34  E-value=1.6e-06  Score=61.17  Aligned_cols=54  Identities=24%  Similarity=0.509  Sum_probs=50.2

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ++.++|.+  ++.++.+++++.++++.|.+.+...+||++++|+++|+|+..|+.+
T Consensus        56 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          56 SVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             CHHHhcCC--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            58899987  8999999999999999999999999999998899999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.33  E-value=1.8e-06  Score=60.64  Aligned_cols=55  Identities=35%  Similarity=0.522  Sum_probs=47.0

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      +..+++... .+.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+++
T Consensus        41 ~~~dl~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          41 TERDLIAKS-EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             EHHHHhcCC-CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            445554431 3789999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.33  E-value=1.7e-06  Score=61.02  Aligned_cols=53  Identities=30%  Similarity=0.492  Sum_probs=49.0

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ++.++|.+  .+.++.+++++.++++.|.+++...+||+| +|+++|+||.+|++.
T Consensus        51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            57888988  889999999999999999999999999998 699999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.32  E-value=2.3e-07  Score=68.19  Aligned_cols=59  Identities=20%  Similarity=0.213  Sum_probs=50.4

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHH---------HcCCCEEEEeeCCCcEEEEEeHHHHHhc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILV---------EKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~---------~~~~~~lPVvD~~g~lvGiVt~~Dll~~  140 (182)
                      ....+++++|.+  ++.++.+++++.+++++|.         +.+...+||+|++|+++|+||.+|++++
T Consensus        56 ~~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          56 QPSDPVSKALYK--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             CCCCcHHHHhhc--cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence            345699999999  9999999999999999653         3356778899988999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.32  E-value=2.1e-06  Score=60.80  Aligned_cols=56  Identities=34%  Similarity=0.665  Sum_probs=50.5

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+...+||+|++ +++|+|+.+|++.
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            34578999988  89999999999999999999999999999965 9999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.32  E-value=1.1e-06  Score=75.82  Aligned_cols=87  Identities=20%  Similarity=0.254  Sum_probs=73.6

Q ss_pred             ccccchhhhhhhcccCcccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcE
Q 030127           49 LATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (182)
Q Consensus        49 ~~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~l  128 (182)
                      .|--||++......     -|.+..++...+..+.++..+|++  ++.++.+.+++..+.+.|...++.-+||+|++.++
T Consensus       220 ~~sRfPVvn~~~kv-----vGvVt~rDv~~~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~l  292 (432)
T COG4109         220 GHSRFPVVNRSMKV-----VGVVTMRDVLDKKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTL  292 (432)
T ss_pred             CCCccceecccceE-----EEEEEehhhhcCCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCceE
Confidence            44455666654443     355667777788888999999999  99999999999999999999999999999999999


Q ss_pred             EEEEeHHHHHhccc
Q 030127          129 VGLVSDYDLLALDS  142 (182)
Q Consensus       129 vGiVt~~Dll~~~~  142 (182)
                      +|+||++|+++.+.
T Consensus       293 lGiitR~dvlk~lq  306 (432)
T COG4109         293 LGIITRQDVLKSLQ  306 (432)
T ss_pred             EEEEEHHHHHHHHH
Confidence            99999999997654

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.31  E-value=2.6e-06  Score=50.46  Aligned_cols=47  Identities=40%  Similarity=0.667  Sum_probs=42.6

Q ss_pred             eEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        95 ~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      +.++.+++++.++++.|.+.++..+||++++++++|+++.+++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            56788999999999999999999999999889999999999997653

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.30  E-value=2.4e-06  Score=64.10  Aligned_cols=49  Identities=29%  Similarity=0.367  Sum_probs=45.3

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++...
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~   50 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF   50 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence            6789999999999999999999999999998899999999999987654

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.30  E-value=2.6e-06  Score=72.36  Aligned_cols=92  Identities=22%  Similarity=0.214  Sum_probs=70.3

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCCCccCC----CceeEeec
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD----NSMFPEVD  158 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~~~~~~----~~~~pVvd  158 (182)
                      ..+.++|.+   +.++++++++.++++.|++++...+||+|+.|.++|+||.+|++......-....+    ......-+
T Consensus       133 ~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~  209 (292)
T PRK15094        133 FSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSR  209 (292)
T ss_pred             CCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCC
Confidence            457889976   56899999999999999999999999999989999999999999876543211111    11222223


Q ss_pred             CCCcEEEEEeHHHHHHHhh
Q 030127          159 STWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       159 ~~~k~~GiVt~~dil~~l~  177 (182)
                      ..+.+-|.++..++.+.++
T Consensus       210 ~~~~v~G~~~l~dl~~~l~  228 (292)
T PRK15094        210 HTWTVRALASIEDFNEAFG  228 (292)
T ss_pred             CeEEEEeccCHHHHHHHhC
Confidence            3456789999999988875

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.29  E-value=2.2e-06  Score=60.99  Aligned_cols=53  Identities=45%  Similarity=0.747  Sum_probs=49.4

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHH-cCCCEEEEeeCCC-cEEEEEeHHHHH
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDW-KLVGLVSDYDLL  138 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~-~~~~~lPVvD~~g-~lvGiVt~~Dll  138 (182)
                      ++.++|+.  ++.++.++.++.++++.|.+ +++..+||+|+++ +++|+++..|+.
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            58999998  89999999999999999999 7999999999886 999999999973

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.29  E-value=3.4e-06  Score=74.23  Aligned_cols=85  Identities=25%  Similarity=0.257  Sum_probs=73.8

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC----------------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----------------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~----------------------------  145 (182)
                      ++..+..++++.+|++.|.+.+++.+||+|++|+.+|.++..|+........                            
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~  317 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRP  317 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEee
Confidence            5889999999999999999999999999999999999999999976433211                            


Q ss_pred             ----------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ----------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ----------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                +...+...+.|+|+++++.|+|+..|++..+..
T Consensus       318 ~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~  360 (381)
T KOG1764|consen  318 TSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL  360 (381)
T ss_pred             cchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence                      335677889999999999999999999998753

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.28  E-value=2.2e-06  Score=60.62  Aligned_cols=54  Identities=26%  Similarity=0.293  Sum_probs=47.8

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..+.++| .  ++.++.+++++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus        57 ~~~~~~~-~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          57 LDLRDLL-R--PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             CCHHHHh-c--CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            3566666 4  5789999999999999999999999999998899999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.27  E-value=1.3e-06  Score=74.02  Aligned_cols=89  Identities=28%  Similarity=0.324  Sum_probs=69.7

Q ss_pred             ccchhhhhhhcccCcccCcceeccc------cCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANS------AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD  124 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~  124 (182)
                      |..|+++..++..+.+....+....      -......-+++.+|++  ...++.++++..+.+-.+.+.+...+||+|+
T Consensus       277 kaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~  354 (382)
T COG3448         277 KALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDA  354 (382)
T ss_pred             ccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcC
Confidence            6778888777776664333222200      0012245589999998  8999999999999999999999999999999


Q ss_pred             CCcEEEEEeHHHHHhcc
Q 030127          125 DWKLVGLVSDYDLLALD  141 (182)
Q Consensus       125 ~g~lvGiVt~~Dll~~~  141 (182)
                      +|+++||||..|++.+.
T Consensus       355 ~g~lvGIvsQtDliaal  371 (382)
T COG3448         355 AGKLVGIVSQTDLIAAL  371 (382)
T ss_pred             CCcEEEEeeHHHHHHHH
Confidence            99999999999998754

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.26  E-value=1.8e-06  Score=78.87  Aligned_cols=59  Identities=29%  Similarity=0.519  Sum_probs=54.8

Q ss_pred             cccccccccc-cCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           81 GVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        81 ~~~~V~diM~-~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ...+|+++|+ +  ++.++++++++.++.+.|.+++++.+||+|++|+++|+|+.+|++...
T Consensus       244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~  303 (546)
T PRK14869        244 QSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPV  303 (546)
T ss_pred             cCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccc
Confidence            4568999999 7  899999999999999999999999999999999999999999999754

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.25  E-value=2.1e-06  Score=78.02  Aligned_cols=62  Identities=21%  Similarity=0.382  Sum_probs=55.3

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      .+.+|.++|++..++.++.+++++.+|++.|.++++..+||+|++++++|+||.+|+++...
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            45689999998223889999999999999999999999999998999999999999997654

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.25  E-value=2.7e-06  Score=61.94  Aligned_cols=56  Identities=27%  Similarity=0.432  Sum_probs=50.1

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEee--CCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD--~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+  +++++.+++++.++++.|.+.+...+||++  ++|+++|+||.+|+++
T Consensus        70 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            3578899988  899999999999999999999999999984  4699999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.25  E-value=3.3e-06  Score=60.51  Aligned_cols=56  Identities=38%  Similarity=0.595  Sum_probs=51.1

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+...+||+|+ |+++|+++.+|+++
T Consensus        65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            34578899988  8999999999999999999999999999996 99999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=3.7e-06  Score=59.13  Aligned_cols=54  Identities=37%  Similarity=0.551  Sum_probs=48.9

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .++.++|..  ++.++.+++++.++++.|.+.+...+||+| +|+++|+++.+|+++
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence            457888887  889999999999999999999999999999 479999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.20  E-value=1.6e-06  Score=79.70  Aligned_cols=58  Identities=24%  Similarity=0.364  Sum_probs=53.0

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC--CcEEEEEeHHHHHhcc
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALD  141 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~--g~lvGiVt~~Dll~~~  141 (182)
                      ..++.|+|.+  ++.++++++++.++++.|.+++.+.+||+|++  ++++|+||.+|+++..
T Consensus       511 ~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        511 DKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             cchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence            3578999998  89999999999999999999999999999876  5899999999998764

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.19  E-value=4.7e-06  Score=75.62  Aligned_cols=61  Identities=34%  Similarity=0.447  Sum_probs=55.4

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ...+|+++|++.+++.++.+++++.+++++|.++++..+||+|++++++|+||.+|+++..
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence            3568999998655789999999999999999999999999999999999999999999764

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.19  E-value=5.1e-06  Score=59.13  Aligned_cols=49  Identities=22%  Similarity=0.489  Sum_probs=45.8

Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        88 iM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      +|.+  ++.++++++++.++++.|.+++...+||++ +|+++|+|+.+|+++
T Consensus        56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            7887  899999999999999999999999999996 789999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.15  E-value=1.2e-05  Score=71.21  Aligned_cols=107  Identities=17%  Similarity=0.103  Sum_probs=75.7

Q ss_pred             CcceeccccCC--CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC
Q 030127           68 SGTLTANSAAP--SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG  145 (182)
Q Consensus        68 ~g~~~~~~~~~--~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~  145 (182)
                      -|.+..+++..  .....++.++|.+   +.++++++++.++++.|++++....+|+|+.|.++|+||.+|++.....+-
T Consensus       238 vGiv~~kDll~~~~~~~~~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei  314 (408)
T TIGR03520       238 TGVLYIKDLLPHLNKKNFDWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDI  314 (408)
T ss_pred             EEEEEHHHHHhHhccCCCCHHHHcCC---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCC
Confidence            44455555421  1123457788865   789999999999999999999999999999899999999999998764332


Q ss_pred             Ccc---CCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          146 SGR---ADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       146 ~~~---~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                      ..+   .+..+...-+..+.+-|.++.+++.+.++
T Consensus       315 ~de~d~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~  349 (408)
T TIGR03520       315 SDEFDDEDLIYSKIDDNNYVFEGKTSLKDFYKILK  349 (408)
T ss_pred             CCcCCcCccceEEeCCCeEEEEeccCHHHHHHHhC
Confidence            111   11112222233456778999999988874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.13  E-value=6.4e-06  Score=58.90  Aligned_cols=56  Identities=16%  Similarity=0.253  Sum_probs=48.8

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCC---EEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT---GFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~---~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+  ++..+.+++++.++++.|.+++..   ..+|++++|+++|+|+..|+++
T Consensus        60 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          60 KKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             CCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            4579999988  899999999999999999988753   4478888899999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.12  E-value=8.5e-06  Score=56.46  Aligned_cols=53  Identities=43%  Similarity=0.771  Sum_probs=49.1

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        85 V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      +.++|..  ++..+.+++++.++++.|.+.+...+||+|++|+++|+++.+|+++
T Consensus        60 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC--CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            6678888  8999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.12  E-value=2.6e-06  Score=76.36  Aligned_cols=74  Identities=16%  Similarity=0.298  Sum_probs=66.1

Q ss_pred             CcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        68 ~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      .|.+....+.....+.+++++|.+  +++.+.++++.+++++.+.+++.-.+||+|++++++|+||..|+......
T Consensus       181 ~Gvvsl~~Ll~a~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         181 LGVVSLRDLLTAEPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             EEEeeHHHHhcCCcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence            566667777667788899999999  89999999999999999999999999999999999999999999876543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.11  E-value=2.3e-05  Score=69.37  Aligned_cols=99  Identities=20%  Similarity=0.145  Sum_probs=73.5

Q ss_pred             cccccccccCCC-eEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC----------------
Q 030127           83 YTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~-~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~----------------  145 (182)
                      .++.++|.+... .+...++....+++..|.+.+.+.+.|+|++++++|+|+.+++.+......                
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQQGLDAALIDAPLAVDAQ  353 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcCCchhhhhccCCceeCCC
Confidence            466677754101 123446778999999999999999999999999999999999875321100                


Q ss_pred             --------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhccc
Q 030127          146 --------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWWV  181 (182)
Q Consensus       146 --------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~~~  181 (182)
                              ........+||+|++++++|+|++.++++.+.+..+
T Consensus       354 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~  397 (400)
T PRK10070        354 TPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRALDREGV  397 (400)
T ss_pred             CCHHHHHHHHHhCCCcEEEECCCCcEEEEEEHHHHHHHHHhcCC
Confidence                    111233449999999999999999999999987643

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.11  E-value=3.4e-06  Score=69.81  Aligned_cols=51  Identities=35%  Similarity=0.434  Sum_probs=47.1

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEe
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS  133 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt  133 (182)
                      ...+++++|.+  ++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus       218 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       218 LKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            34679999998  8999999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.09  E-value=8.4e-06  Score=57.15  Aligned_cols=53  Identities=30%  Similarity=0.451  Sum_probs=46.4

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      .++.++|.+  ++.++++++++.++++.|.+ . ..+||+|++|+++|+||.+|+++
T Consensus        57 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          57 LPVREVMGE--PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             cCHHHHhcC--CCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence            578899987  88999999999999999988 3 34789988899999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.07  E-value=1.2e-05  Score=72.24  Aligned_cols=58  Identities=34%  Similarity=0.512  Sum_probs=54.0

Q ss_pred             ccccccccc-cCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           82 VYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        82 ~~~V~diM~-~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ..+++++|+ .  ++.++.+++++.++++.|.+++...+||+|++|+++|+||.+|+++..
T Consensus       142 ~~~V~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       142 GKPVSEVMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCHHHhhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            457999998 5  799999999999999999999999999999999999999999999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.07  E-value=1.3e-05  Score=60.12  Aligned_cols=55  Identities=31%  Similarity=0.642  Sum_probs=50.5

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      ..++.++|.+  ++.++.+++++.++++.|.+.+...+||+++ |+++|+|+.+|++.
T Consensus        88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            4578899988  8999999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.01  E-value=5.7e-05  Score=66.11  Aligned_cols=85  Identities=20%  Similarity=0.210  Sum_probs=67.9

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-------------------------Ccc
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-------------------------SGR  148 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-------------------------~~~  148 (182)
                      ......++.+..++++.|...+...+.|+|+++++.|.|+.+++.......+                         +..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKAQGLQDVLIDDIYTVDAGTLLRETVRKVLK  330 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcCCchhhhhccCCceECCCCcHHHHHHHHHh
Confidence            3445667778999999999999999999999999999999999875422110                         223


Q ss_pred             CCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          149 ADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       149 ~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                      .+.. +||+|++++++|+|++.++++.+.+.
T Consensus       331 ~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       331 AGIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             CCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence            3444 99999999999999999999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.98  E-value=2.7e-05  Score=70.51  Aligned_cols=58  Identities=40%  Similarity=0.567  Sum_probs=53.4

Q ss_pred             ccccccccc-cCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           82 VYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        82 ~~~V~diM~-~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ..++.++|. .  +++++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++..
T Consensus       146 ~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        146 SQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             CCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence            457999998 5  789999999999999999999999999999999999999999998654

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.91  E-value=2.6e-05  Score=70.87  Aligned_cols=62  Identities=27%  Similarity=0.354  Sum_probs=56.9

Q ss_pred             CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ......+|+++|+.  +++++..++.+-||+-.|.++++.++||++ +|+++|+||..||+++..
T Consensus       209 g~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         209 GRSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             CCCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence            34566799999999  999999999999999999999999999998 799999999999998754

>PRK11573 hypothetical protein; Provisional

Probab=97.72  E-value=0.00021  Score=63.51  Aligned_cols=90  Identities=17%  Similarity=0.089  Sum_probs=67.1

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCCCccCC----CceeEeecCC
Q 030127           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD----NSMFPEVDST  160 (182)
Q Consensus        85 V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~~~~~~----~~~~pVvd~~  160 (182)
                      +.++|.   ++.+++++.++.++++.|++++.....|+|+.|...|+||.+|++.....+-..+.+    ......-+..
T Consensus       257 l~~~~r---~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~  333 (413)
T PRK11573        257 MLRAAD---EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGS  333 (413)
T ss_pred             HHhhcc---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCE
Confidence            335554   488999999999999999999988888999999999999999999866543212111    1122222334


Q ss_pred             CcEEEEEeHHHHHHHhh
Q 030127          161 WKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       161 ~k~~GiVt~~dil~~l~  177 (182)
                      +.+-|.++..|+.+.++
T Consensus       334 ~~v~G~~~l~d~~~~l~  350 (413)
T PRK11573        334 VIIDGTANVREINKAFN  350 (413)
T ss_pred             EEEEeeeEHHHHHHHhC
Confidence            56779999999988874

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.71  E-value=4.3e-05  Score=67.25  Aligned_cols=83  Identities=30%  Similarity=0.389  Sum_probs=67.7

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC---CcEEEEEeHHHHHhccccCC-------------------------
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISG-------------------------  145 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~---g~lvGiVt~~Dll~~~~~~~-------------------------  145 (182)
                      +++++.|+.++.++++....+++..+||.++.   .+|+|+||.+|+-.......                         
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~~~~~~~~gi~l~~~nei  196 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTKNPVTGAQGITLKEANEI  196 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhhhhcccccccccccccHHHHHHH
Confidence            67999999999999999999999999999643   68999999999865422110                         


Q ss_pred             CccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          146 SGRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                      +.+.+-..+||++++++++.++++.|+.+..
T Consensus       197 L~~~kkGkl~iv~~~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  197 LKKIKKGKLPVVDDKGELVAMLSRTDLMKNR  227 (503)
T ss_pred             HHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence            2234445689999999999999999998764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.53  E-value=0.00019  Score=62.84  Aligned_cols=56  Identities=25%  Similarity=0.419  Sum_probs=51.0

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      .+.+.|.+  ...++.+++++.+++..|.+++.. +||+|++|+++|+|+..+++....
T Consensus       303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            57778877  788999999999999999999998 999999999999999999987654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.39  E-value=0.001  Score=59.31  Aligned_cols=85  Identities=21%  Similarity=0.171  Sum_probs=65.1

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCCCccCCC----ceeEeecCCCcEEEEEeH
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN----SMFPEVDSTWKVHSTRCR  169 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~~~~~~~----~~~pVvd~~~k~~GiVt~  169 (182)
                      ++..++++.++.++++.|++.+..-..|+|+.|.+.|+||.+|++.....+-..+.+.    ...-..++.+.+-|.+..
T Consensus       280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~~l  359 (429)
T COG1253         280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRVPL  359 (429)
T ss_pred             CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccccH
Confidence            5899999999999999999999888889999999999999999998766543222221    222222333456799999


Q ss_pred             HHHHHHhhh
Q 030127          170 SCLVKPMGR  178 (182)
Q Consensus       170 ~dil~~l~~  178 (182)
                      +++.+.++-
T Consensus       360 ~e~~~~l~~  368 (429)
T COG1253         360 EELEELLGI  368 (429)
T ss_pred             HHHHHHhCC
Confidence            998887753

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.35  E-value=0.00029  Score=62.76  Aligned_cols=55  Identities=16%  Similarity=0.286  Sum_probs=46.4

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ..++.++|.+  ++.++.+++++.++++.|.+++   .+||+++|+++|+||.+|+++..
T Consensus       399 ~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       399 DDAVSKVMSK--KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CCCHHHhcCC--CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence            4579999988  8899999999999999998754   35555579999999999998753

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.24  E-value=0.00053  Score=53.50  Aligned_cols=58  Identities=21%  Similarity=0.367  Sum_probs=48.8

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ....+|.++|..  .+.++++++++..+-.++.++.  .+.|+ ++|+++||||..|+++...
T Consensus       127 i~~~~vr~vM~e--~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         127 IRSLRVREVMGE--PFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             hhhhhHHHHhcC--CCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHh
Confidence            356799999999  8999999999998888877654  56677 4899999999999998653

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.24  E-value=0.00067  Score=60.16  Aligned_cols=60  Identities=23%  Similarity=0.281  Sum_probs=52.0

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~  145 (182)
                      ..+.+.+.+  ...++.+++++.+++..|.+.... +||+|++|+++|+|+..++++.....+
T Consensus       337 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~~  396 (400)
T PRK10070        337 QGLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDREG  396 (400)
T ss_pred             Cchhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhcC
Confidence            357777877  789999999999999999997766 999999999999999999998765443

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.12  E-value=0.0011  Score=58.46  Aligned_cols=51  Identities=33%  Similarity=0.511  Sum_probs=47.2

Q ss_pred             CCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        93 ~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      +.+++|.++.++.++++.|..++..++.|+|++|.++|+|+..|++.....
T Consensus       310 ~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~  360 (381)
T KOG1764|consen  310 EGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL  360 (381)
T ss_pred             CccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence            467999999999999999999999999999999999999999999987654

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.06  E-value=0.0007  Score=59.81  Aligned_cols=71  Identities=30%  Similarity=0.341  Sum_probs=59.4

Q ss_pred             cceeccccCC-CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           69 GTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        69 g~~~~~~~~~-~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      |.+...++.+ +.....+.++|++  ++++.+.+.+++++-+++.+++...+||+|++|+++-+++..||.+..
T Consensus       156 G~vtsrdi~f~~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  156 GIITSRDIQFLEDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR  227 (503)
T ss_pred             EEEehhhhhhhhcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence            4444444422 4456788999999  779999999999999999999999999999999999999999998643

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.03  E-value=0.00053  Score=63.32  Aligned_cols=65  Identities=26%  Similarity=0.426  Sum_probs=55.7

Q ss_pred             cccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-----CcEEEEEeHHHHHhc
Q 030127           74 NSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLAL  140 (182)
Q Consensus        74 ~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-----g~lvGiVt~~Dll~~  140 (182)
                      |+-.....+++++|+|.+  ++++++.-+.+..+.+.++...+..+||+|+.     +++.|+|-.+.++..
T Consensus       573 ~~pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vl  642 (762)
T KOG0474|consen  573 WEPEPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVL  642 (762)
T ss_pred             CCCchHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHH
Confidence            444555677899999999  99999999999999999999999999999853     478999999888643

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=96.59  E-value=0.0062  Score=53.44  Aligned_cols=94  Identities=18%  Similarity=0.221  Sum_probs=63.3

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCCCccCC---CceeEeecC
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD---NSMFPEVDS  159 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~~~~~~---~~~~pVvd~  159 (182)
                      .+-.+++.-..++.++++.+++.+-+..|++.+-..-.||||-|.+.|+||.+|++.-+...--...+   ....+--|.
T Consensus       265 ~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dg  344 (423)
T COG4536         265 FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDG  344 (423)
T ss_pred             ccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCC
Confidence            34455554333689999999999999999999888888999999999999999999765432211111   111111121


Q ss_pred             CCcEEEEEeHHHHHHHh
Q 030127          160 TWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       160 ~~k~~GiVt~~dil~~l  176 (182)
                      .--.-|-.+..|+.+++
T Consensus       345 s~iidGs~~iRdlNr~l  361 (423)
T COG4536         345 SFIIDGSANVRDLNRAL  361 (423)
T ss_pred             cEEEeCCCcHHHHHHhc
Confidence            22234666777777665

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=96.31  E-value=0.0052  Score=45.87  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=30.2

Q ss_pred             CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC
Q 030127           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD  125 (182)
Q Consensus        94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~  125 (182)
                      ++.++.+++++.+|++.|.++++..+||+|++
T Consensus        87 ~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          87 GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            78999999999999999999999999999865

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.18  E-value=0.017  Score=53.51  Aligned_cols=45  Identities=27%  Similarity=0.562  Sum_probs=37.0

Q ss_pred             eEEEcCC-CCHHHHHHHHHHcCCCEEEEe-eC-CCcEEEEEeHHHHHh
Q 030127           95 LHVVKPT-TTVDEALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLA  139 (182)
Q Consensus        95 ~~~v~~~-~tl~ea~~~m~~~~~~~lPVv-D~-~g~lvGiVt~~Dll~  139 (182)
                      ..++..+ .+++|...+|.++.++.+||+ ++ ..+++|+|..+|+.-
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~  605 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFL  605 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHH
Confidence            4555554 899999999999999999988 33 378999999999864

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.11  E-value=0.0093  Score=55.36  Aligned_cols=57  Identities=18%  Similarity=0.271  Sum_probs=51.8

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      +....+|++  .++++.+++++..+..++++-+.+++.|+++..+++|++|.+|++...
T Consensus       690 vDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  690 VDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR  746 (762)
T ss_pred             cccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence            355678998  899999999999999999999999999999889999999999998654

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.01  E-value=0.0086  Score=51.83  Aligned_cols=99  Identities=23%  Similarity=0.176  Sum_probs=69.9

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC---------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---------------  145 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~---------------  145 (182)
                      .-++++++|.+......-.+...-..+...+.......+.+++.+++.+|+|+..++........               
T Consensus       272 ~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~d~~~~~~~~  351 (386)
T COG4175         272 RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAALIDDVLTVDADTPLSEILA  351 (386)
T ss_pred             heeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcccccccccccCccchHHHHHH
Confidence            34577888885212233333444566788888888777778887788999999999876411111               


Q ss_pred             CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                      ........++|+|+++++.|++++.++++++.+.
T Consensus       352 ~~~~~~~p~aVvde~~r~vG~i~~~~vl~aL~~~  385 (386)
T COG4175         352 RIRQAPCPVAVVDEDGRYVGIISRGELLEALARI  385 (386)
T ss_pred             HHhcCCCceeEEcCCCcEEEEecHHHHHHHHhcC
Confidence            1134455788999999999999999999998753

>PF00571 CBS: CBS domain CBS domain web page

Probab=95.88  E-value=0.01  Score=37.10  Aligned_cols=31  Identities=29%  Similarity=0.250  Sum_probs=26.9

Q ss_pred             ccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          147 GRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       147 ~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                      ...+...+||+|++++++|+++..++++.+.
T Consensus        26 ~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen   26 RKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             HHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            3455778999999999999999999999874

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.07  E-value=0.049  Score=48.11  Aligned_cols=53  Identities=15%  Similarity=0.283  Sum_probs=44.3

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      .+.+ +..  +..++++++++.+++..+.+.+.. ++|+|+ |+++|+|+..+++...
T Consensus       327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~  379 (382)
T TIGR03415       327 EVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHAL  379 (382)
T ss_pred             chhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHH
Confidence            4666 555  688999999999999988887654 788885 9999999999998765

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=94.27  E-value=0.13  Score=42.91  Aligned_cols=108  Identities=21%  Similarity=0.229  Sum_probs=72.2

Q ss_pred             CcceeccccCC----CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           68 SGTLTANSAAP----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        68 ~g~~~~~~~~~----~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      .|.++++++..    ......+.++..+   .+++++...+...++.++.++.....|+|+-|.+-|+||.+|++..+..
T Consensus       114 ~GIL~AKDLL~~~~~~~~~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         114 EGILLAKDLLPFMRSDAEPFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             hhhhhHHHHHHHhcCCcccccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhc
Confidence            55666666522    2223566677665   7889999999999999998888888899999999999999999976543


Q ss_pred             CC---Cc-cCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          144 SG---SG-RADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       144 ~~---~~-~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                      .-   +. .......+.-+..+.+-+.-..++..+.++.
T Consensus       191 dIEDE~Deee~~dI~~ls~~~~~VrALT~IedFNe~F~t  229 (293)
T COG4535         191 DIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGT  229 (293)
T ss_pred             ccccccchhhhhhhHhhcCCceEEEecccHHHHHHHhcC
Confidence            21   11 1122234444455555566666666665543

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.15  E-value=0.12  Score=48.08  Aligned_cols=58  Identities=14%  Similarity=0.237  Sum_probs=51.3

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      .....+++|..  .+.++...++++-+++++++-+..++.|.. +|++.|+||.+|+++..
T Consensus       637 ~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  637 SRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence            44678889988  899999999999999999999999987765 89999999999998754

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=92.70  E-value=0.26  Score=43.59  Aligned_cols=86  Identities=12%  Similarity=0.045  Sum_probs=54.4

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc------------c----
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS------------I----  143 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~------------~----  143 (182)
                      ..-+++.++|.+   ...+...+.. .+++.   .+.+.+.|+|+     |+++..+...+..            .    
T Consensus       271 ~~~l~a~~~m~~---~~~~~~~~~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (382)
T TIGR03415       271 LNVLTARSLMRP---LTDLEHVDGG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAAEQEVESLEAAPTVI  338 (382)
T ss_pred             ccceeHHHHhcc---cccccccCcc-hhhhh---cccceeEeecc-----ceecccchHhHhhcccccchhhhcccCccc
Confidence            345688889955   3333222222 34433   78888999985     7887766554221            0    


Q ss_pred             C-C--------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          144 S-G--------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       144 ~-~--------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                      . .        ........++|+|+ |+++|+|++.+++.++.+
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       339 NPDTLMRDVLAARHRTGGAILLVEN-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             CCCCcHHHHHHHHhcCCCCeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence            0 0        11233456778886 999999999999999865

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=91.73  E-value=0.33  Score=42.29  Aligned_cols=52  Identities=23%  Similarity=0.339  Sum_probs=43.2

Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        88 iM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      .+.+  .+.++..++++.+.+..+.+... .++|+|++++++|+|+...++.+..
T Consensus       332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         332 ALID--DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             cccc--cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence            4455  67889999999999988877654 5799999999999999999987654

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=91.50  E-value=0.19  Score=47.87  Aligned_cols=60  Identities=27%  Similarity=0.347  Sum_probs=51.9

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC--CcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~--g~lvGiVt~~Dll~~~~  142 (182)
                      -.+.|+++|.+  ++.++..+.|.+|..+.+....++.+|+||+.  -.|+|.|.++.|..+..
T Consensus       586 h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~  647 (931)
T KOG0476|consen  586 HTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ  647 (931)
T ss_pred             eEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence            34689999999  99999999999999999888779999999754  46999999999976543

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.48  E-value=0.41  Score=40.54  Aligned_cols=36  Identities=31%  Similarity=0.465  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127          104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (182)
Q Consensus       104 l~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~  139 (182)
                      -.+++..+...+.+.+||+|++|+++|.||..+++.
T Consensus       272 ~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         272 DRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             hHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            334555555666666777777777777777766653

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=90.33  E-value=0.34  Score=27.56  Aligned_cols=28  Identities=18%  Similarity=0.237  Sum_probs=23.4

Q ss_pred             CCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          149 ADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       149 ~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                      .+...+|+++++++++|+++..++.+.+
T Consensus        21 ~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116       21 HGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             hCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            4556788998889999999999998765

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=86.50  E-value=1.7  Score=41.64  Aligned_cols=76  Identities=11%  Similarity=0.014  Sum_probs=58.2

Q ss_pred             ccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           66 FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        66 ~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      +.+..++.|+......++...++-+.- .+..+-+.+++.++-.++.--++++..|++ .|+++|+|.+++|.+++..
T Consensus       784 ~~~eei~~we~~~l~~~ld~~~~~IDp-aPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~  859 (931)
T KOG0476|consen  784 LSAEEIKEWEEEQLSQKLDLDECAIDP-APFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIEN  859 (931)
T ss_pred             cChhhhhHHHHHHhccccchhhCCCCC-CceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHh
Confidence            444455555555555566666665541 567788899999999999999999999998 6999999999999987654

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=84.23  E-value=1  Score=31.99  Aligned_cols=27  Identities=15%  Similarity=0.036  Sum_probs=22.4

Q ss_pred             cCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          148 RADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       148 ~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                      ..+...+||+|++++++|+++..++.+
T Consensus        86 ~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          86 EHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             HcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            345568999999999999999998864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=82.17  E-value=3.2  Score=35.32  Aligned_cols=69  Identities=25%  Similarity=0.235  Sum_probs=50.7

Q ss_pred             CCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------------------------
Q 030127          101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------------------------------  145 (182)
Q Consensus       101 ~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------------------------------  145 (182)
                      +-.+.||+.+-     +.+.|.+ +|+++=+-+..+++..+.+..                                   
T Consensus       193 THDidEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  266 (309)
T COG1125         193 THDIDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPL  266 (309)
T ss_pred             ecCHHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCcc
Confidence            34577777553     4578888 799999999888875433210                                   


Q ss_pred             ------------CccCCCceeEeecCCCcEEEEEeHHHHHHH
Q 030127          146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKP  175 (182)
Q Consensus       146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~  175 (182)
                                  +.......+||+|++|+++|.+++.+++..
T Consensus       267 ~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         267 LEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             ccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence                        224455678999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
4gqv_A	166	Crystal Structure Of Cbs-pair Protein, Cbsx1 From A		2e-40
3sl7_A	180	Crystal Structure Of Cbs-Pair Protein, Cbsx2 From A		1e-30
4gqw_A	152	Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop		1e-28
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		5e-06
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		1e-05

>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From Arabidopsis Thaliana Length = 166

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 86/99 (86%), Gaps = 1/99 (1%)
Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178
           LDSISGSGR +NSMFPEVDSTWK  +   +  L K  G+
Sbjct: 62  LDSISGSGRTENSMFPEVDSTWKTFNA-VQKLLSKTNGK 99

>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           YTVGDF T ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4   YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 143 ISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178
           ISG  + D ++FP+VDSTWK  +   +  + K  G+
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTFN-ELQKLISKTYGK 98

>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop Deletion) From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 72/99 (72%), Gaps = 15/99 (15%)
Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178
           LDS               DSTWK  +   +  L K  G+
Sbjct: 62  LDS--------------GDSTWKTFNA-VQKLLSKTNGK 85

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G +T    A   G   V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KL
Sbjct: 137 GIITKKDIAAREG-KLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193
Query: 129 VGLVSDYDLLALDSISGSGRADNS 152
           VGL++  DL+A      + R +N 
Sbjct: 194 VGLITMSDLVARKKYKNAVRDENG 217

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           + D MT +E+L V  P  ++++A EIL + RI   P++  D KLVGL++  D++++
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSV 212

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-26
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	1e-17
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	8e-21
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-10
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-20
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	6e-11
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-20
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-11
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	8e-20
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-10
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-19
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-12
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	5e-17
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	5e-13
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	5e-16
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-11
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-15
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	5e-12
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	7e-15
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-13
1vr9_A	213	CBS domain protein/ACT domain protein; structural	4e-14
1vr9_A	213	CBS domain protein/ACT domain protein; structural	2e-11
1pbj_A	125	Hypothetical protein; structural genomics, domain,	5e-14
1pbj_A	125	Hypothetical protein; structural genomics, domain,	8e-12
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	5e-14
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	4e-13
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-13
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	1e-12
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-13
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	2e-11
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	3e-13
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	3e-10
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	4e-13
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-12
1pvm_A	184	Conserved hypothetical protein TA0289; structural	4e-13
1pvm_A	184	Conserved hypothetical protein TA0289; structural	5e-13
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-12
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-11
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	7e-10
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	7e-05
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-12
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-12
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-11
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-09
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-12
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-12
3ddj_A	296	CBS domain-containing protein; structural genomics	9e-11
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-09
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	5e-12
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	7e-11
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	8e-10
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	6e-05
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-11
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	3e-10
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-07
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	4e-11
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	8e-08
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	4e-11
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	7e-11
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	7e-11
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	7e-06
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	8e-11
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	7e-10
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-10
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-09
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-08
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-04
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-08
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	5e-10
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	4e-04
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	5e-10
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	4e-05
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	1e-09
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	6e-06
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	2e-09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	5e-07
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	2e-09
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	7e-07
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	7e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	8e-08
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	6e-08
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	2e-05
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	7e-08
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	3e-05
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	1e-07
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	1e-06
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	1e-07
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	3e-06
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	4e-07
3fio_A	70	A cystathionine beta-synthase domain protein fused	5e-06
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	2e-05
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	4e-04
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	6e-04
2oux_A	286	Magnesium transporter; 10001B, structural genomics	6e-04
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	8e-04

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 97.9 bits (244), Expect = 3e-26
 Identities = 58/80 (72%), Positives = 72/80 (90%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           YTVGDFMT ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4   YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63

Query: 143 ISGSGRADNSMFPEVDSTWK 162
           ISG  + D ++FP+VDSTWK
Sbjct: 64  ISGRSQNDTNLFPDVDSTWK 83

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 75.5 bits (186), Expect = 1e-17
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 10/84 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL----- 138
            VGD MT      VV+ +T +++A  +L+E +    PV+D D KL+G+++  +++     
Sbjct: 99  VVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ 156

Query: 139 ---ALDSISGSGRADNSMFPEVDS 159
                DSISG  + D ++FP+VDS
Sbjct: 157 IKRNADSISGRSQNDTNLFPDVDS 180

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 82.8 bits (205), Expect = 8e-21
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D M + E++  V+    ++ AL +LV+   +  PV+D  +KL GL+S   +  LD I
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMI--LDGI 73

Query: 144 SGSGRADNSMFPEV 157
            G  R +     E+
Sbjct: 74  LGLERIEFERLEEM 87

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V   M     + V+K   +  +ALE+ ++        +++D    G+++   +L
Sbjct: 87  MKVEQVMKQD--IPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAIL 138

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 82.5 bits (204), Expect = 1e-20
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TV  F+   +++  V+P   +D AL +L +   +  PV+D  +KL GL+S   ++
Sbjct: 12  TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMM 66

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 57.1 bits (138), Expect = 6e-11
 Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V + M     +  ++   ++ +A+ ++V        V +DD    G+ +  ++L
Sbjct: 83  MKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVL 134

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 80.6 bits (199), Expect = 8e-20
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TVG FM   +++  V+    ++ AL +L +   T  PV+D  ++L GL+    +  ++SI
Sbjct: 15  TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI--MNSI 72

Query: 144 SGSGRADNSMFPEV 157
            G  R +     ++
Sbjct: 73  FGLERIEFEKLDQI 86

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            TV + M T   +  +     + +   +++        V +D+    G+ +   +L
Sbjct: 86  ITVEEVMLTD--IPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVL 137

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 79.2 bits (196), Expect = 2e-19
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
           V  V   ++   +  VV+  T ++E ++ ++E  +T    +  D KLVG++    LL + 
Sbjct: 15  VKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS 72

Query: 142 SISGSGRADNSMFPE 156
                G         
Sbjct: 73  GFHFFGFIPKEELIR 87

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 51  TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEI 110
                +         F        S+          + M        V   T ++EAL++
Sbjct: 64  PVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKL 120

Query: 111 LVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +++  I   PV+D+  ++VG ++  ++L
Sbjct: 121 MIDNNIQEMPVVDEKGEIVGDLNSLEIL 148

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 72.6 bits (179), Expect = 5e-17
 Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 84  TVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            +GD  + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L
Sbjct: 9   PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 62.2 bits (152), Expect = 5e-13
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +  +    E ++       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 78  SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 70.0 bits (172), Expect = 5e-16
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT    +   K    V EA E +++ +I+  PVIDD+ K++G+V+  D+ 
Sbjct: 9   KVKDVMTKN--VITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIG 61

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILV-----EKRITGFPVIDDDWKLVGLVSDYDLL 138
           T+GD MT   ++  +    ++ EA++ +      E+ I   PV+D + KLVG++SD D++
Sbjct: 74  TIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 67.3 bits (165), Expect = 7e-15
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT     H +  T T+++A  ++    I   P++D + KL+G+VS  DLL
Sbjct: 6   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL 58

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 63.5 bits (155), Expect = 2e-13
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            + + M T  ++  V P   + E+   + + +I   PV+  D  LVG+++D D + + +I
Sbjct: 79  PLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFVTI-AI 134

Query: 144 SGSGRADNSMFPEVDSTWKVHSTR 167
           +     + S   E+D   + H   
Sbjct: 135 NLLELQEESEPDELDEEQEGHHHH 158

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 66.7 bits (163), Expect = 4e-14
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
            V  ++T   +  +V+ + TV E L  + + +     V D +    G+V+  DLL LD
Sbjct: 14  KVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD 69

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
           +V + ++       V     +  AL + +E +    PV+D++ +L G VS +D L AL  
Sbjct: 73  SVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE 130

Query: 143 ISGSGRA 149
                  
Sbjct: 131 ALAMDVP 137

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 64.5 bits (158), Expect = 5e-14
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D M T  ++  +  T ++++ L   VE       V+ +    VG+V+ +D+L
Sbjct: 2   RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEG-VRVGIVTTWDVL 53

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 58.7 bits (143), Expect = 8e-12
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + M     L  + P  T+ EA E +V+  +    V +DD +++G++S  D+L
Sbjct: 66  KVWEVMERD--LVTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISATDIL 117

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 64.1 bits (157), Expect = 5e-14
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D ++            ++ EA +IL++  I   P++D+  KLVG+++ +D+ 
Sbjct: 3   VKDILSKP--PITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIA 54

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 61.8 bits (151), Expect = 4e-13
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T+ + MT    +        VD     + +  I+G PV+DD  ++VG+V+  D+ 
Sbjct: 63  TIEEIMT--RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS 115

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 63.1 bits (154), Expect = 3e-13
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V DF +      V+    +V +A+  +  + +    V+D D  LVG++S  DLL
Sbjct: 18  QVKDFQSIP---VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLL 69

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 61.2 bits (149), Expect = 1e-12
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLL 138
            V   MT    + V +    V +  + L+EK+I   PVI D    ++++G V+  ++ 
Sbjct: 82  PVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMT 139

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 62.6 bits (153), Expect = 3e-13
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D++
Sbjct: 9   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIV 61

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T G+       ++ V    ++ E L ++ E ++   PVI +  +LVG+V++ D+ 
Sbjct: 75  TAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIA 126

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 62.6 bits (153), Expect = 3e-13
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +  +MT K  L  VKP+T+V EA  +++E  +    VI+DD  +VG  +  D++
Sbjct: 8   PIKVYMTKK--LLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDII 60

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   MT    L      T + E L  + E RI    + ++  K+VG+ +  DLL
Sbjct: 73  PVERIMTRN--LITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLL 124

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 62.2 bits (152), Expect = 4e-13
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              +FMT    L  ++  + +  AL ++ +  I   PV+DD   L G++S  D+ 
Sbjct: 68  KAEEFMTAS--LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDIT 120

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V ++M T  ++  V     +++  +++ EK I    V+D + K VG++++ D++
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN-KPVGIITERDIV 56

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 63.2 bits (154), Expect = 4e-13
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   M +      V   TTV +A++I+ E  + G  V DD+   VGL+S+  ++
Sbjct: 10  RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSII 62

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 63.2 bits (154), Expect = 5e-13
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +   M     +  VK    V +    L E  +    V+DD  ++VG+V+  DL 
Sbjct: 76  PIRLVMRKP--IPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS 128

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL 140
           +   D + T  +L V   +  V +A   LV   +   P+ D      VG+++  D + +
Sbjct: 35  HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINI 93

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 58.8 bits (142), Expect = 8e-11
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 35  CLLLSRPGCRVFSVLATSSDRVSA-LRRSSAVFASGTLTANSAAPSSGVYTVGDFMT-TK 92
              L R       V+   S      L     +            P     ++ +    T 
Sbjct: 141 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTY 200

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
             + +V+ TT V  AL I V+ R++  PV+D+  ++V + S +D++ L +       D S
Sbjct: 201 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS 260

Query: 153 M 153
           +
Sbjct: 261 V 261

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 55.7 bits (134), Expect = 7e-10
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +V   +  +    E +       T++  +  LVE  +    V+D+   + G+VS  D+L
Sbjct: 260 SVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 318

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSG 147
             + + L  + P  ++ +A+  L+  +I   PVID +    + +++   +L    +  + 
Sbjct: 122 QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE 181

Query: 148 RADNSMFP 155
                   
Sbjct: 182 FPKPEFMS 189

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + M    ++   K    + +  EI+V   I   PV+D++ ++ G++++ D+L
Sbjct: 224 RMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVL 276

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 61.3 bits (149), Expect = 7e-12
 Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL--ALD 141
            V + M     +  +K    +DEA+E  + K + G P+++D+ +L+ L+++ D++   LD
Sbjct: 85  PVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLD 142

Query: 142 SISGSGRADNSMFPEVDSTW 161
            I  +   D+ +  +V    
Sbjct: 143 KIDENEVIDDYITRDVIVAT 162

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              + D++T   ++ V  P   + +    +V       PV+ +  +LVG+++  D +
Sbjct: 147 NEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEG-RLVGIITSTDFI 200

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLL 138
           +      K  +  V PTTT+ +AL  + E +    PV++  + K+VG+++  D++
Sbjct: 6   MKIAQNKK--IVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIV 58

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 77  APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD 136
                ++ V  FM+TK  +  +     +D+A+++++ +     PVIDDD K+VG+V+  +
Sbjct: 150 KDLDEIFPVKVFMSTK--VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVN 207

Query: 137 LL 138
            +
Sbjct: 208 AI 209

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
            + D+MT       V  T+    A+ I+V +     PV+D + K VG+V++ + L     
Sbjct: 94  PIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD 151

Query: 143 ISGSGRADNSMFPEVDSTW 161
           +         M  +V + +
Sbjct: 152 LDEIFPVKVFMSTKVQTIY 170

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 58.2 bits (141), Expect = 9e-11
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D M T   L  +    +V+ A   ++ KRI    +++ D  + G++++ DLL
Sbjct: 228 VVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL 280

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +   M       ++     +  A + + E  I    V ++  K+ GL++  DLL
Sbjct: 21  NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLL 71

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +   +    ++ VVK   T+ +A ++++E       V+D   K VG+++  D++
Sbjct: 62  LAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT   ++ V  P  TV E    + +  I   PVI  +  L+GL+ D+DLL
Sbjct: 222 PVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 274

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 55.6 bits (134), Expect = 8e-10
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V   MT       +    T + ALE+  + ++  FPV++ + KLVG++S   +L
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL 54

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +  +      + +V   T +  AL+ L+       PV+D +  LVG+V + DLL
Sbjct: 127 EIEPYYQRY--VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL 179

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 14/52 (26%), Positives = 32/52 (61%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L
Sbjct: 194 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 245

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 56.9 bits (137), Expect = 3e-10
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 84  TVGDFMT----TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +       E ++       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 257 SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 315

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL 140
            T  D +     L V+  +  V ++L +L++  I   P+ D    +  GL++  D + +
Sbjct: 30  KTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINV 88

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 59.2 bits (142), Expect = 4e-11
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 87  DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           D++ TK+ L  V     V++    + E R + +PVID++ K+VG ++ + L+
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 49.5 bits (117), Expect = 8e-08
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            V D      ++  + P  ++  A  I+ +K +   PV D +  L+G++S  ++
Sbjct: 8   KVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNI 59

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 56.8 bits (138), Expect = 4e-11
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 80  SGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             + TV   +  K   +  + P  +V  A++ +    I    V+ D+ KLVG++++ D  
Sbjct: 3   GHMKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-KLVGILTERDFS 61

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT +  +  V    T ++ + ++ E R+   PV+DD  K++GL+S  DL+
Sbjct: 75  QVKEIMTRQ--VAYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 126

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 57.6 bits (139), Expect = 7e-11
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 84  TVGDFMTTKEELHVV----KPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDL 137
              D M  +    ++    + + TV++   I+ E   +GFPV+      +LVG V   DL
Sbjct: 12  LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 71

Query: 138 L 138
           +
Sbjct: 72  I 72

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + +        V   T ++  ++I  +  +    V  +  +L+G+++  D+L
Sbjct: 109 KLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVL 160

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.9 bits (138), Expect = 8e-11
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +V   MT    +   +  +T D+ +EI+   R    PV ++  +L G++S  D++
Sbjct: 94  SVSVAMTKN--VVRCQHNSTTDQLMEIMTGGRFRHVPVEENG-RLAGIISIGDVV 145

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D +  K  ++  V P  ++ EA   L   +I    V D D  ++G+ ++ DL+
Sbjct: 25  FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLV 80

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT K  +  V+P+ + DE + ++ E R+   PV+D   KL+GL+S  DL+
Sbjct: 79  RVEEIMTAK--VRYVEPSQSTDECMALMTEHRMRHLPVLDGG-KLIGLISIGDLV 130

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 77  APSSGVYTVGDFMTTKE----ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            P S   TV   +  K      ++ V     V +A++++ EK I    V+D D  + G+V
Sbjct: 1   GPGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIV 59

Query: 133 SDYDLL 138
           ++ D  
Sbjct: 60  TERDYA 65

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +  +    + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 252 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 310

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 91  TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           T   L      T V + +++L EK I+  P+++ +  L+ +    D++ L
Sbjct: 191 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHL 240

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL 140
           T  D + T   L V   T  V  +L +L    I   P+ D +  K  GL++  D + +
Sbjct: 23  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNV 80

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T      T  +  V     +  +A   L        PV+D + + +G+V    LL     
Sbjct: 6   TFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKG 62

Query: 144 SGSG--RADNSMFPEV 157
             +   +    +   V
Sbjct: 63  WPTVKEKLGEELLETV 78

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            +G+ +     +   +P   + + L  +   + +  P+ D+D +  G+VS   +L 
Sbjct: 69  KLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILG 122

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 54.6 bits (131), Expect = 5e-10
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLL 138
            V  FM     +  +   T ++E ++++    +T +P+++      LVG+V    L+
Sbjct: 14  RVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLV 68

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +     T+     +   TT+ +A  +     +    V     + VG VS  ++ 
Sbjct: 89  ILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRG-RAVGCVSWVEMK 142

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 56.4 bits (137), Expect = 5e-10
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V D MT   +L      T + EA +I+ EK++   P+IDDD  L  +V
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIV 210

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDL 137
           VKP  T  + L I          V DD      L+GLV+  D 
Sbjct: 110 VKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDY 152

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + + MT + EL V     T+ EA EIL   +    P+++D  +LV +++  DL
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDL 227

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDL 137
           V+ P+ TV + LE  +    +G P+ +      KLVG+V+  D+
Sbjct: 120 VLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDI 163

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + D MT +E+L V  P  ++++A EIL + RI   P++  D KLVGL+
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLI 204

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 47.9 bits (115), Expect = 5e-07
 Identities = 17/40 (42%), Positives = 30/40 (75%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           V P  TV EA++++ E +I G PV+D++ +LVGL+++ D+
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV 147

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V   MT KE L  VK   T  E  E + + R+    V++D+++L G++
Sbjct: 151 VAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMI 198

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 47.5 bits (114), Expect = 7e-07
 Identities = 12/40 (30%), Positives = 25/40 (62%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           V+P  T+ + +E+       GFPV+ ++ +LVG+++  D+
Sbjct: 102 VRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV 141

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                  +      V  T  V  A E +    I    V++ + +LVG++S  DL 
Sbjct: 72  PAMPIANS---PITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 123

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 48.0 bits (115), Expect = 8e-08
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLL 138
              + +        +  T T+ E    L + R+    +   D+  + V +VS+ D+L
Sbjct: 6   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL 60

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + D MT KE+L      TT+ EA +IL + +I   P++D++  L GL+
Sbjct: 177 ISDVMT-KEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLI 223

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDL 137
           + P   V +A  ++ + RI+G PV++  D+ KLVG++++ D+
Sbjct: 126 LTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM 167

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 50.2 bits (121), Expect = 7e-08
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + + MT  E L      T ++ A  IL E RI   P++D+  +L GL+
Sbjct: 154 ISEHMT-SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLI 200

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDL 137
           + P   V EA E++   RI+G P+++   + KLVG++++ D+
Sbjct: 103 LTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM 144

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKR--ITGFPVIDDDWKLVGLVSDYDL 137
            V D M T +E+  V    T+ +AL  +  K   +T   + DDD  ++G+ +D DL
Sbjct: 29  RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTA--ICDDDMNIIGIFTDGDL 82

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           ++ D MT       ++P T   +AL ++  + IT   V D D  L+G+V  +DLL
Sbjct: 96  SIADVMTRGG--IRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLL 147

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KLVGL+
Sbjct: 152 VKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLI 197

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + P  TVD AL ++ +  I G PV++D+ K+VG+++  D+
Sbjct: 106 IAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDI 144

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 78  PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYD 136
             S   T  + M   E    + P +       IL +      FPVID +  L+G +S  +
Sbjct: 448 DRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKE 507

Query: 137 LL 138
           ++
Sbjct: 508 IV 509

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL---DSISGSG 147
                ++K   TV EA+ ++ + R+   PV+D DD  ++G+V    L+      +   S 
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSD 451

Query: 148 RADNSM---FPEVDST 160
            A  ++      ++ +
Sbjct: 452 PAIKALNKRVIRLNES 467

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 79  SSGVY--TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK--LVGLVSD 134
           S+  Y   VGD M    ++  +  T+T  + L +L + ++  FP +D      L+G +  
Sbjct: 7   SANKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDR 64

Query: 135 YDLLALDSISGSGRADNSMFPEVDS 159
            ++  L     S             
Sbjct: 65  TEVEGLLQRRISAYRRQPAAAAEAD 89

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLL 138
             +G +     ++ V+    TV +A                ++D+  K +G V  YD+ 
Sbjct: 54  NEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIF 110

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-------VIDDDWKLVGLVSDY 135
            T G  MTT  E   +    TV  A+ +L  K             V+D +  LVG++S  
Sbjct: 137 ETAGAIMTT--EFVSIVANQTVRSAMYVL--KNQADMAETIYYVYVVDQENHLVGVISLR 192

Query: 136 DLL 138
           DL+
Sbjct: 193 DLI 195

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-------VIDDDWKLVGLVSDY 135
              G  MT   E   V+   TV+E L  L  +R            V+D+  +L G++S  
Sbjct: 135 DEAGGLMTP--EYVAVREGMTVEEVLRFL--RRAAPDAETIYYIYVVDEKGRLKGVLSLR 190

Query: 136 DLL 138
           DL+
Sbjct: 191 DLI 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.67
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.67
4esy_A	170	CBS domain containing membrane protein; structural	99.65
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.64
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.64
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.64
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.63
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.63
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.63
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.61
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.59
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.59
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.58
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.57
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.57
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.56
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.56
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.55
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.54
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.54
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.54
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.54
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.54
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.53
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.52
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.52
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.51
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.5
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.5
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.5
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.5
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.5
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.49
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.48
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.45
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.44
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.44
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.43
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.42
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.41
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.41
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.41
3ddj_A	296	CBS domain-containing protein; structural genomics	99.4
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.39
3ddj_A	296	CBS domain-containing protein; structural genomics	99.38
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.34
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.34
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.32
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.31
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.3
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.29
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.26
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.25
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.22
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.21
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.15
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.14
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.14
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.13
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.08
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.05
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.04
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.04
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.01
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.98
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.98
4esy_A	170	CBS domain containing membrane protein; structural	98.98
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.97
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.97
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.96
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.96
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.95
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.94
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.94
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.93
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.93
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.92
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.91
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.91
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.88
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.88
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.87
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.87
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.85
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.84
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.84
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.84
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.84
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.84
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.83
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.83
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.83
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.82
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.82
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.81
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.81
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.81
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.81
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.79
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.78
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.78
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.76
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.76
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.74
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.73
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.71
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.7
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.68
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.67
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.63
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.62
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.61
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.58
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.57
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.54
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.41
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.35
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.33
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.31
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.29
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.14
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.12
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.12
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.05
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.04
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.87
3fio_A	70	A cystathionine beta-synthase domain protein fused	94.15
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	91.79

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.67  E-value=3.3e-16  Score=114.59  Aligned_cols=98  Identities=17%  Similarity=0.254  Sum_probs=83.2

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccCC--------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG--------------  145 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~~--------------  145 (182)
                      ..++|+++|+++.++.++.+++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++......              
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~m~~~~~v~   82 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLVRPAVFIP   82 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGGCBCCCEEE
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHHhCCCeEeC
Confidence            467999999954378999999999999999999999999999986 89999999999987532111              


Q ss_pred             -----------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 -----------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 -----------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                 |...+...+||+|++|+++|+||+.|+++.+.+
T Consensus        83 ~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           83 EVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             TTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence                       446678899999999999999999999998865

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.67  E-value=1.8e-16  Score=120.80  Aligned_cols=94  Identities=23%  Similarity=0.305  Sum_probs=80.3

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------------------  144 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------------------  144 (182)
                      .+++++|+|+++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.....                  
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~   94 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKT   94 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBC
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhcC
Confidence            47899999988999999999999999999999999999999889999999999997532110                  


Q ss_pred             C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          145 G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       145 ~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                      .                |..  ...+||+|++|+++|+||+.|+++++.+
T Consensus        95 ~~~~v~~~~~l~~~~~~m~~--~~~lpVVd~~g~l~GiiT~~Dil~~~~~  142 (156)
T 3k6e_A           95 DVAVVSPDFTITEVLHKLVD--ESFLPVVDAEGIFQGIITRKSILKAVNA  142 (156)
T ss_dssp             SCCCBCTTCCHHHHHHHTTT--SSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CceecccccHHHHHHHHHHH--cCCeEEEecCCEEEEEEEHHHHHHHHHH
Confidence            0                222  3469999999999999999999999865

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.65  E-value=2.7e-16  Score=120.40  Aligned_cols=95  Identities=22%  Similarity=0.252  Sum_probs=82.5

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC----------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----------------  144 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~----------------  144 (182)
                      ..++|+|+|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.....                
T Consensus        16 ~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T 4esy_A           16 RQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAP   93 (170)
T ss_dssp             HTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHH
T ss_pred             cCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchh
Confidence            56799999999  999999999999999999999999999999999999999999997542110                


Q ss_pred             --------------------C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          145 --------------------G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       145 --------------------~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                          .                |...+...+||+| +|+++|+||+.|+++.+..
T Consensus        94 ~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A           94 EVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             HHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCC
T ss_pred             hHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence                                0                4467888999998 5899999999999988754

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.64  E-value=6.8e-16  Score=112.49  Aligned_cols=97  Identities=22%  Similarity=0.276  Sum_probs=81.8

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccCC---------------
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG---------------  145 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~~---------------  145 (182)
                      +.+|+++|++..++.++.+++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++......               
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m~~~~~v   81 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRTAVVV   81 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHCBCCCEE
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHcCCCeEE
Confidence            46899999972259999999999999999999999999999987 89999999999986542110               


Q ss_pred             ------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                  |...+...+||+|++|+++|+||+.|+++.+.+
T Consensus        82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           82 PESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             ETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred             CCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence                        446678889999999999999999999998743

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.64  E-value=1.5e-15  Score=110.64  Aligned_cols=96  Identities=18%  Similarity=0.135  Sum_probs=83.7

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC---------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---------------  145 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~---------------  145 (182)
                      ..++++++|.+  ++.++.+++++.+|++.|.+++++.+||+|+ |+++|+|+.+|+++......               
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~   79 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLETVR   79 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBCCC
T ss_pred             cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCcccCcHHHHccCCCc
Confidence            46799999999  8999999999999999999999999999998 99999999999986532110               


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                    +...+...+||+|++|+++|++|+.|+++.+.+.
T Consensus        80 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~~  127 (128)
T 3gby_A           80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER  127 (128)
T ss_dssp             CBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHTT
T ss_pred             EECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHhh
Confidence                          3355667799999999999999999999998764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.64  E-value=6.4e-16  Score=113.47  Aligned_cols=97  Identities=10%  Similarity=0.025  Sum_probs=82.3

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC-CCcEEEEEeHHHHHhccccCC----------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSISG----------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~-~g~lvGiVt~~Dll~~~~~~~----------------  145 (182)
                      ++|+++|+++.++.++++++++.+|++.|.+++++.+||+|+ +|+++|+|+.+|+++......                
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m~~~~~   81 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAADEIYF   81 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHSBCCCE
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhccCCeE
Confidence            589999986447899999999999999999999999999975 589999999999986543210                


Q ss_pred             -------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 -------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 -------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                   |...+...+||+|++|+++|++|..|+++.+.+.
T Consensus        82 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A           82 VPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             EETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC-
T ss_pred             eCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCC
Confidence                         3456778899999999999999999999998653

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.63  E-value=1.1e-15  Score=114.04  Aligned_cols=101  Identities=14%  Similarity=0.152  Sum_probs=86.8

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccC----------C--
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS----------G--  145 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~----------~--  145 (182)
                      .+...+|+++|+++.++.++.+++++.+|++.|.+++++.+||+|++ |+++|+||.+|++......          .  
T Consensus        19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~~m~~~~   98 (148)
T 3lv9_A           19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINENKIELEEILRDII   98 (148)
T ss_dssp             GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSCCCGGGTCBCCE
T ss_pred             ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCCCccHHHhcCCCe
Confidence            45678999999986679999999999999999999999999999987 8999999999998652111          0  


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                    |...+...+||+|++|+++|+||..|+++.+.+.
T Consensus        99 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A           99 YISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred             EECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence                          3456778899999999999999999999998653

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.63  E-value=4.1e-16  Score=114.10  Aligned_cols=99  Identities=15%  Similarity=0.120  Sum_probs=81.9

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccCC-------------
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG-------------  145 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~~-------------  145 (182)
                      +...+|+++|++..++.++.+++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++......             
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m~~~~   82 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVMRPIQ   82 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHSEECC
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHhcCCc
Confidence            3667999999974467799999999999999999999999999987 89999999999986532110             


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                    |...+...+||+|++|+++|+||+.|+++.+.+
T Consensus        83 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           83 VVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             EEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             CcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence                          445677889999999999999999999998753

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.63  E-value=5.6e-16  Score=114.50  Aligned_cols=98  Identities=20%  Similarity=0.205  Sum_probs=81.8

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccCC---------------
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG---------------  145 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~~---------------  145 (182)
                      +.+|+++|+++.++.++.+++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++......               
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~~~~~   81 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLRPATF   81 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCBCCCE
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcCCCeE
Confidence            46899999954478999999999999999999999999999987 89999999999997543100               


Q ss_pred             -------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 -------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 -------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                   |...+...+||+|++|+++|+||..|+++.+.+.
T Consensus        82 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~  128 (136)
T 3lfr_A           82 VPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGD  128 (136)
T ss_dssp             EETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC---
T ss_pred             ECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence                         3456778899999999999999999999987653

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.61  E-value=1.5e-15  Score=109.17  Aligned_cols=94  Identities=21%  Similarity=0.334  Sum_probs=81.7

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------------  145 (182)
                      ++|+++|.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++......                 
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~v~~~~~~~~~~v~~~   78 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAHED   78 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTTCCBGGGTSBSSCCCEETT
T ss_pred             CchHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhcccCHHHHhcCCCeEECCC
Confidence            378999999  8999999999999999999999999999998999999999999986532110                 


Q ss_pred             ---------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ---------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ---------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                               +...+...+||+|++++++|+|+..|+++.+.+
T Consensus        79 ~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           79 EPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence                     335677889999999999999999999998865

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.59  E-value=3.6e-15  Score=115.36  Aligned_cols=101  Identities=14%  Similarity=0.091  Sum_probs=86.0

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhcccc---------CC---
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSI---------SG---  145 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~---------~~---  145 (182)
                      .+...+|+++|+++.+++++.+++++.+|++.|.+++++.+||+|++ |+++|+|+.+|++.....         ..   
T Consensus        32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~~~~v~~~~~~~~  111 (173)
T 3ocm_A           32 TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRNRLRDPII  111 (173)
T ss_dssp             HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSSCCGGGSBCCCE
T ss_pred             ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCCcchhHhcCCCeE
Confidence            45678999999864478999999999999999999999999999977 899999999999864210         00   


Q ss_pred             -------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 -------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 -------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                   |...+...+||+|++|+++|+||..|+++.+.+.
T Consensus       112 v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~  158 (173)
T 3ocm_A          112 VHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGE  158 (173)
T ss_dssp             ECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCC
T ss_pred             ECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCc
Confidence                         4466778899999999999999999999998753

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.59  E-value=4.9e-15  Score=113.76  Aligned_cols=101  Identities=15%  Similarity=0.199  Sum_probs=83.3

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccCC------------
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG------------  145 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~~------------  145 (182)
                      .+...+|+++|+++.+++++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|+++......            
T Consensus        38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im~~~~  117 (172)
T 3lhh_A           38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVDLVKNCN  117 (172)
T ss_dssp             -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGCBCCE
T ss_pred             ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHhcCCe
Confidence            45678999999953388999999999999999999999999999987 99999999999987543110            


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                    |...+...+||+|++|+++|+||+.|+++.+.+.
T Consensus       118 ~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~  165 (172)
T 3lhh_A          118 FVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGE  165 (172)
T ss_dssp             EEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTT
T ss_pred             EeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCC
Confidence                          4456778899999999999999999999998654

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.58  E-value=1.6e-14  Score=105.73  Aligned_cols=97  Identities=25%  Similarity=0.347  Sum_probs=82.7

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHH-HhccccC-------------C-
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LALDSIS-------------G-  145 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dl-l~~~~~~-------------~-  145 (182)
                      ...+++++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+ ++.....             . 
T Consensus         6 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~   83 (138)
T 2p9m_A            6 KNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDV   83 (138)
T ss_dssp             TTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSCSSC
T ss_pred             ccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhCCCc
Confidence            56799999998  89999999999999999999999999999988999999999999 6532110             0 


Q ss_pred             ---------------CccCC-----CceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 ---------------SGRAD-----NSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 ---------------~~~~~-----~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                     +...+     ...+||+|++++++|+++..|+++.+.+.
T Consensus        84 ~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  137 (138)
T 2p9m_A           84 ITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI  137 (138)
T ss_dssp             CCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             EEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence                           44556     77899999889999999999999988653

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.57  E-value=1.8e-14  Score=105.07  Aligned_cols=95  Identities=17%  Similarity=0.263  Sum_probs=81.9

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-------------C--
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------G--  145 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-------------~--  145 (182)
                      ..++|+++|.+  ++.++.+++++.+|++.|.+++++.+||+| +|+++|+|+.+|+++.....             .  
T Consensus         2 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~~   78 (133)
T 2ef7_A            2 EEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLI   78 (133)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECCC
T ss_pred             CcccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCCcccCHHHHcCCCCE
Confidence            45689999999  899999999999999999999999999999 89999999999997642210             0  


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                    +...+...+||+|++|+++|+||..|+++.+.+
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence                          334567789999989999999999999998865

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.57  E-value=5e-15  Score=110.31  Aligned_cols=98  Identities=21%  Similarity=0.213  Sum_probs=82.0

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-----------C----
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-----------S----  144 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-----------~----  144 (182)
                      +..++|+++|++..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++....           .    
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~   91 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ   91 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH
Confidence            4678999999963369999999999999999999999999999989999999999999865421           0    


Q ss_pred             ----C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          145 ----G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       145 ----~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                          .                +...+  .+||+|++|+++|+||..|+++.+.+.
T Consensus        92 ~m~~~~~~v~~~~~l~~a~~~~~~~~--~l~Vvd~~g~~~Giit~~dil~~l~~~  144 (150)
T 3lqn_A           92 VMKQDIPVLKLEDSFAKALEMTIDHP--FICAVNEDGYFEGILTRRAILKLLNKK  144 (150)
T ss_dssp             TCBSSCCEEETTCBHHHHHHHHHHCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HhcCCCceeCCCCCHHHHHHHHHhCC--EEEEECCCCcEEEEEEHHHHHHHHHHH
Confidence                0                22333  299999999999999999999998764

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.56  E-value=5.8e-15  Score=111.51  Aligned_cols=95  Identities=19%  Similarity=0.236  Sum_probs=81.6

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccC---C---------
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS---G---------  145 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~---~---------  145 (182)
                      .+...+|+++|+++.+++++++++++.+|++.|.+++++.+||+|++ |+++|+||.+|++......   .         
T Consensus        34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im~~~~  113 (156)
T 3oi8_A           34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKSILRPAV  113 (156)
T ss_dssp             HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHCBCCC
T ss_pred             ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHcCCCE
Confidence            34678999999975578999999999999999999999999999987 4999999999998763220   0         


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHH
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLV  173 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil  173 (182)
                                    |...+...+||+|++|+++|+||..|++
T Consensus       114 ~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          114 FVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             EEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             EECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence                          4467788999999999999999999986

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.56  E-value=2e-14  Score=106.36  Aligned_cols=98  Identities=64%  Similarity=0.897  Sum_probs=83.7

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc------------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS------------------  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~------------------  142 (182)
                      ..++|+++|++..++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|++....                  
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~   82 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKT   82 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC----
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHh
Confidence            45799999998656899999999999999999999999999998899999999999975311                  


Q ss_pred             -cCC------------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          143 -ISG------------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       143 -~~~------------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                       ...                        |...+...+||++++++++|+||..|+++.+.+
T Consensus        83 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           83 NGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             -CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence             000                        445677789999999999999999999998865

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.55  E-value=3.7e-15  Score=111.96  Aligned_cols=100  Identities=19%  Similarity=0.245  Sum_probs=84.0

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEe-eC-CCcEEEEEeHHHHHhccccC----------C--
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLALDSIS----------G--  145 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVv-D~-~g~lvGiVt~~Dll~~~~~~----------~--  145 (182)
                      +...+|+++|+++.++.++.+++++.+|++.|.+++++.+||+ |+ +|+++|+||.+|+++.....          .  
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~~~~v~~~m~~~~   96 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDDKAKISTIMRDIV   96 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHTTSBGGGTCBCCE
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCCCCcHHHHhCCCe
Confidence            3567999999965478999999999999999999999999999 65 48999999999998642110          0  


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                    |...+...+||+|++|+++|+||+.|+++.+.+.
T Consensus        97 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~  144 (153)
T 3oco_A           97 SVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGN  144 (153)
T ss_dssp             EEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC-
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhcc
Confidence                          4466778899999999999999999999998753

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.54  E-value=3.5e-14  Score=104.14  Aligned_cols=97  Identities=23%  Similarity=0.266  Sum_probs=81.8

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh-ccccC-------------C
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSIS-------------G  145 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~-~~~~~-------------~  145 (182)
                      +...+|+++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++ .....             .
T Consensus         4 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~   81 (138)
T 2yzi_A            4 DMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRN   81 (138)
T ss_dssp             CTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCS
T ss_pred             hhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHhhCC
Confidence            456799999998  8999999999999999999999999999998899999999999973 22110             0


Q ss_pred             ----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 ----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 ----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                      |...+...+ |+|++|+++|+||..|+++.+.+.
T Consensus        82 ~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~  130 (138)
T 2yzi_A           82 LITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRR  130 (138)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCC
T ss_pred             CeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHH
Confidence                            334566678 999889999999999999988653

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.54  E-value=3e-14  Score=108.59  Aligned_cols=98  Identities=52%  Similarity=0.773  Sum_probs=83.5

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc-------------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD-------------------  141 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~-------------------  141 (182)
                      ..++|+++|+++.++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++..                   
T Consensus         2 ~~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~   81 (180)
T 3sl7_A            2 TGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDST   81 (180)
T ss_dssp             CCCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------C
T ss_pred             CceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccch
Confidence            3468999999855689999999999999999999999999999999999999999998421                   


Q ss_pred             --------------ccCC------------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          142 --------------SISG------------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       142 --------------~~~~------------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                    ....                        |...+...+||+|++++++|+||+.|+++.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           82 WKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             CCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence                          0000                        456777899999999999999999999998754

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.54  E-value=5.7e-14  Score=111.60  Aligned_cols=97  Identities=13%  Similarity=0.194  Sum_probs=84.3

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHc---CCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------  145 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~---~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------  145 (182)
                      +...+|+++|++  +++++++++++.+|++.|.+.   +++.+||+|++|+++|+|+.+|++.......           
T Consensus        51 ~~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~~~~~v~~im~~~~~~  128 (205)
T 3kxr_A           51 YSENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHEPHEPLISLLSEDSRA  128 (205)
T ss_dssp             SCTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSCTTSBGGGGCCSSCCC
T ss_pred             CCcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCCCcchHHHHhcCCCeE
Confidence            456689999999  999999999999999999987   7899999999999999999999985422110           


Q ss_pred             -------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 -------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 -------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                   |...+...+||+|++|+++|+||..|+++.+..
T Consensus       129 v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          129 LTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             EETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence                         456788899999999999999999999998764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.54  E-value=2.3e-14  Score=103.04  Aligned_cols=93  Identities=15%  Similarity=0.139  Sum_probs=78.5

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC----C-------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----G-------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~----~-------------  145 (182)
                      ++|+++|++  ++.++.+++++.+|++.|.+++++.+||+| +|+++|+|+.+|+++.....    .             
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~~~   77 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVT   77 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGE
T ss_pred             CCHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCCeE
Confidence            478999998  899999999999999999999999999999 89999999999998642110    0             


Q ss_pred             -------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 -------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 -------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                   +...+...+||+|+ ++++|+++..|+++.+.+.
T Consensus        78 v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~~  123 (125)
T 1pbj_A           78 ISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMAK  123 (125)
T ss_dssp             ECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC--
T ss_pred             ECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence                         33556778999998 9999999999999988654

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.53  E-value=4.3e-14  Score=106.49  Aligned_cols=99  Identities=18%  Similarity=0.227  Sum_probs=82.0

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc---------CC----
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---------SG----  145 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~---------~~----  145 (182)
                      .+..++|+++|++++++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|++.....         ..    
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~   89 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVE   89 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHH
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHH
Confidence            34567999999875568999999999999999999999999999988999999999999865321         00    


Q ss_pred             ----------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 ----------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 ----------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                            +...+  .+||+|++++++|+||+.|+++.+.+.
T Consensus        90 ~~m~~~~~~v~~~~~l~~a~~~m~~~~--~lpVvd~~g~~vGiit~~dil~~~~~~  143 (159)
T 1yav_A           90 EVMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  143 (159)
T ss_dssp             HHSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HhcCCCCceEcCCCCHHHHHHHHHhCC--EEEEEeCCCeEEEEEEHHHHHHHHHHH
Confidence                                  22333  399999899999999999999988653

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.52  E-value=2e-14  Score=109.26  Aligned_cols=100  Identities=18%  Similarity=0.169  Sum_probs=84.3

Q ss_pred             CCccccccccccccC-CCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-------C-----
Q 030127           78 PSSGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-------S-----  144 (182)
Q Consensus        78 ~~~~~~~V~diM~~~-~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-------~-----  144 (182)
                      ..+..++|+++|+++ .++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++....       .     
T Consensus        19 ~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   98 (165)
T 3fhm_A           19 FQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVA   98 (165)
T ss_dssp             CSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGT
T ss_pred             HhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHH
Confidence            345678999999962 268999999999999999999999999999988999999999999764211       0     


Q ss_pred             ---C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          145 ---G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       145 ---~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                         .                |...+...+||+|+ ++++|+|+..|+++.+.+
T Consensus        99 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           99 MTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             SBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred             hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence               0                33557778999998 999999999999998865

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.52  E-value=5.4e-14  Score=106.21  Aligned_cols=97  Identities=21%  Similarity=0.204  Sum_probs=82.2

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc--------------C
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--------------S  144 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~--------------~  144 (182)
                      .+..++|+++|++  . +++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++....              .
T Consensus        13 ~l~~~~v~~im~~--~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~   89 (159)
T 3fv6_A           13 KLKKLQVKDFQSI--P-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTR   89 (159)
T ss_dssp             HHTTCBGGGSCBC--C-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEE
T ss_pred             HHhhCCHHHHcCC--C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCcccCcCHHHHHcC
Confidence            3467799999987  4 599999999999999999999999999988999999999999874311              0


Q ss_pred             --C----------------CccCCCceeEeecCCC---cEEEEEeHHHHHHHhhh
Q 030127          145 --G----------------SGRADNSMFPEVDSTW---KVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       145 --~----------------~~~~~~~~~pVvd~~~---k~~GiVt~~dil~~l~~  178 (182)
                        .                |...+...+||+|+++   +++|+||..|+++.+.+
T Consensus        90 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           90 MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             TTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence              1                3345677899999888   99999999999998865

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.51  E-value=6.5e-14  Score=106.00  Aligned_cols=95  Identities=25%  Similarity=0.263  Sum_probs=81.6

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc------------CC---
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI------------SG---  145 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~------------~~---  145 (182)
                      ..++|+++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++....            ..   
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v   80 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL   80 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCH
Confidence            35689999999  89999999999999999999999999999988999999999999864210            00   


Q ss_pred             -----------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 -----------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 -----------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                             |...+...+||+|+ ++++|+||..|+++.+.+
T Consensus        81 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           81 FEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             HHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred             HHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence                                   33556778999998 999999999999998754

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.50  E-value=6.8e-14  Score=103.23  Aligned_cols=94  Identities=15%  Similarity=0.085  Sum_probs=79.1

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCC--cEEEEEeHHHHHhccccC-------------C-
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSIS-------------G-  145 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g--~lvGiVt~~Dll~~~~~~-------------~-  145 (182)
                      .++|+++|++  ++.++.+++++.+|++.|.+++++.+||+|++|  +++|+|+.+|+++.....             . 
T Consensus         4 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~   81 (141)
T 2rih_A            4 AIRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   81 (141)
T ss_dssp             -CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             ceEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCCC
Confidence            3589999998  899999999999999999999999999999888  999999999998642110             0 


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                                    |...+...+||+|++++++|+||..|+++.+.
T Consensus        82 ~~v~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           82 TVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred             eEEcCCCHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHH
Confidence                          22345668999998999999999999987654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.50  E-value=3.4e-14  Score=103.56  Aligned_cols=95  Identities=17%  Similarity=0.257  Sum_probs=79.3

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh-ccccC-----C---------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSIS-----G---------  145 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~-~~~~~-----~---------  145 (182)
                      ..++|+++|.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|++. .....     .         
T Consensus         6 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~   83 (133)
T 1y5h_A            6 TMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDS   83 (133)
T ss_dssp             --CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTC
T ss_pred             hhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCC
Confidence            34689999998  8999999999999999999999999999998899999999999983 32110     0         


Q ss_pred             ----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                      |...+...+||+|+ ++++|++|..|+++.+.+
T Consensus        84 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           84 IYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             CCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC-
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence                            33556778999998 899999999999998754

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.50  E-value=6.1e-14  Score=104.95  Aligned_cols=98  Identities=19%  Similarity=0.183  Sum_probs=80.5

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----------CC----
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----------SG----  145 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----------~~----  145 (182)
                      +..++|+++|.++.++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++....          ..    
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~   87 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE   87 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH
Confidence            4667999999854468999999999999999999999999999988999999999999865321          00    


Q ss_pred             ---------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 ---------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 ---------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                           |...+.  +||+|++++++|+||..|+++.+.+.
T Consensus        88 ~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A           88 VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHT
T ss_pred             HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence                                 222332  89999889999999999999988653

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.50  E-value=4.2e-14  Score=105.58  Aligned_cols=92  Identities=21%  Similarity=0.235  Sum_probs=78.6

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC----------------
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----------------  145 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~----------------  145 (182)
                      .++|+++|++..++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++......                
T Consensus        27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~  106 (149)
T 3k2v_A           27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGGI  106 (149)
T ss_dssp             TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESCC
T ss_pred             ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCCe
Confidence            3589999987556899999999999999999999999999998899999999999986532110                


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK  174 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~  174 (182)
                                    |...+...+||+|++ +++|+|+..|+++
T Consensus       107 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A          107 RIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             EECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence                          335577789999976 9999999999875

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.50  E-value=7.9e-14  Score=101.99  Aligned_cols=91  Identities=22%  Similarity=0.247  Sum_probs=78.1

Q ss_pred             ccccccc---cCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh-cccc------C--------C
Q 030127           84 TVGDFMT---TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSI------S--------G  145 (182)
Q Consensus        84 ~V~diM~---~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~-~~~~------~--------~  145 (182)
                      +|+++|+   +  ++.++.+++++.+|++.|.+++++.+||+| +|+++|+|+.+|+++ ....      .        .
T Consensus         7 ~v~~im~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~   83 (135)
T 2rc3_A            7 TVKHLLQEKGH--TVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQ   83 (135)
T ss_dssp             BHHHHHHHHCC--CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCS
T ss_pred             eHHHHHhcCCC--CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCC
Confidence            8999999   6  899999999999999999999999999999 899999999999985 2110      0        0


Q ss_pred             ----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                      +...+...+||+| +++++|+||..|+++.+.+
T Consensus        84 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           84 VAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             CCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             CeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence                            3345667899999 7999999999999998765

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.49  E-value=7.1e-14  Score=108.09  Aligned_cols=94  Identities=23%  Similarity=0.231  Sum_probs=81.6

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc------C---------C--
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI------S---------G--  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~------~---------~--  145 (182)
                      ++|+++|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|++.....      .         .  
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~~   86 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIP   86 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCC
T ss_pred             cCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCCc
Confidence            689999998  89999999999999999999999999999988999999999999864321      0         0  


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                    |...+...+||+|++++++|+||..|+++.+.+
T Consensus        87 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           87 KVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             EEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence                          335577889999988999999999999987654

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.48  E-value=2.2e-13  Score=102.47  Aligned_cols=100  Identities=19%  Similarity=0.234  Sum_probs=84.6

Q ss_pred             CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCE-EEEeeCCCcEEEEEeHHHHHhccc--------------
Q 030127           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG-FPVIDDDWKLVGLVSDYDLLALDS--------------  142 (182)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~-lPVvD~~g~lvGiVt~~Dll~~~~--------------  142 (182)
                      ......+|+++|++  ++.++.+++++.+|++.|.+++++. +||+|++ +++|+||.+|+++...              
T Consensus        11 ~~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (157)
T 1o50_A           11 HHMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIR   87 (157)
T ss_dssp             TTCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC------
T ss_pred             hhhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHH
Confidence            34467799999999  9999999999999999999999999 9999977 9999999999986421              


Q ss_pred             -----cCC-------------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhcc
Q 030127          143 -----ISG-------------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWW  180 (182)
Q Consensus       143 -----~~~-------------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~~  180 (182)
                           ...                         |...+...+||+|++++++|+|++.|+++.+.+..
T Consensus        88 ~~~~~~~~~~v~~im~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~~  155 (157)
T 1o50_A           88 SSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  155 (157)
T ss_dssp             -CCCCCSSCBHHHHCBCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             HHHHHHcCCcHHHHcCCCeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHhh
Confidence                 000                         33456678999998899999999999999987643

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.45  E-value=4.6e-13  Score=98.30  Aligned_cols=96  Identities=23%  Similarity=0.307  Sum_probs=80.2

Q ss_pred             ccccccc---ccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc--------------
Q 030127           81 GVYTVGD---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--------------  143 (182)
Q Consensus        81 ~~~~V~d---iM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~--------------  143 (182)
                      ...++++   +|.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++....              
T Consensus         6 ~~~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   83 (144)
T 2nyc_A            6 LKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEAL   83 (144)
T ss_dssp             GGSBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHH
T ss_pred             hhcchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHHHHH
Confidence            3446777   8887  89999999999999999999999999999988999999999999753210              


Q ss_pred             -C------C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          144 -S------G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       144 -~------~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                       .      .                |...+...+||+|++++++|+||..|+++.+.+
T Consensus        84 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           84 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             hcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence             0      1                234466789999988999999999999998754

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.44  E-value=3.5e-13  Score=101.14  Aligned_cols=96  Identities=15%  Similarity=0.202  Sum_probs=81.7

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC--CCcEEEEEeHHHHHhcccc--------------
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSI--------------  143 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~--~g~lvGiVt~~Dll~~~~~--------------  143 (182)
                      ...++|+++|++  ++.++.+++++.+|++.|.+++++.+||+|+  +|+++|+||.+|++.....              
T Consensus        10 ~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~   87 (164)
T 2pfi_A           10 SHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQ   87 (164)
T ss_dssp             CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHH
T ss_pred             ccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhh
Confidence            356799999999  8999999999999999999999999999996  7999999999999754310              


Q ss_pred             -----C------C---------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          144 -----S------G---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       144 -----~------~---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                           .      .               |...+...+||+| +++++|+||+.|+++.+.+
T Consensus        88 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           88 DILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             HHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             hhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence                 0      0               3355677899999 7999999999999998765

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.44  E-value=3.8e-13  Score=111.76  Aligned_cols=98  Identities=23%  Similarity=0.198  Sum_probs=84.4

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHc-----CCCEEEEeeCCCcEEEEEeHHHHHhccccCC--------
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISG--------  145 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~-----~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~--------  145 (182)
                      .....+|+++|++  +++++.+++++.+|++.|.++     +++.+||+|++|+++|+||.+|++.......        
T Consensus       133 ~~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~~~~~v~~im~~~  210 (286)
T 2oux_A          133 HYEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDDDTLIADILNER  210 (286)
T ss_dssp             TSCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSCTTSBHHHHSBSC
T ss_pred             cCChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCCCCCcHHHHcCCC
Confidence            4466799999999  999999999999999999988     7889999998899999999999986422110        


Q ss_pred             ----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                      |...+...+||+|++|+++|+||..|+++.+..
T Consensus       211 ~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          211 VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             CeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence                            446677889999999999999999999998764

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.43  E-value=7.7e-13  Score=105.13  Aligned_cols=95  Identities=21%  Similarity=0.255  Sum_probs=81.6

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC--------C--------
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------G--------  145 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------~--------  145 (182)
                      ..+++++|.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+.......        .        
T Consensus        12 ~~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~~~~v~~im~~~~~~v~~~~   89 (213)
T 1vr9_A           12 HMKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSLPDFFVHEED   89 (213)
T ss_dssp             -CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCTTSBSGGGCBCTTCCEETTS
T ss_pred             ccCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcCCCcHHHHccCCCEEECCCC
Confidence            3588999999  999999999999999999999999999999889999999999997532210        0        


Q ss_pred             --------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 --------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 --------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                              |...+...+||+|++++++|+||..|+++.+..
T Consensus        90 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A           90 NITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             BHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence                    345677889999988999999999999998754

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.41  E-value=9.3e-13  Score=108.65  Aligned_cols=96  Identities=24%  Similarity=0.275  Sum_probs=81.7

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHc-----CCCEEEEeeCCCcEEEEEeHHHHHhccccC--------C--
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSIS--------G--  145 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~-----~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------~--  145 (182)
                      ...+++++|++  +++++.+++++.+|++.|.++     +++.+||+|++|+++|+||.+|++......        .  
T Consensus       133 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~~~~~v~~im~~~~~  210 (278)
T 2yvy_A          133 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADPRTRVAEIMNPKVV  210 (278)
T ss_dssp             CTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSCTTCBSTTTSBSSCC
T ss_pred             CcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCCCCCcHHHHhCCCCe
Confidence            45689999999  999999999999999999987     789999999889999999999998542110        0  


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                    |...+...+||+|++|+++|+||..|+++.+.+
T Consensus       211 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          211 YVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred             EEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence                          445677889999999999999999999998765

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.41  E-value=6.9e-13  Score=99.45  Aligned_cols=95  Identities=21%  Similarity=0.225  Sum_probs=79.3

Q ss_pred             cccccccccC----CCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-----C--------
Q 030127           83 YTVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-----G--------  145 (182)
Q Consensus        83 ~~V~diM~~~----~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-----~--------  145 (182)
                      .+|+++|+++    .++.++.+++++.+|++.|.+++++.+||+| +|+++|+|+.+|+++.....     .        
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   85 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERSSKATRVEEIMT   85 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSB
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCCccccCHHHHcC
Confidence            4799999963    2569999999999999999999999999955 89999999999998643210     0        


Q ss_pred             ------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 ------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 ------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                        +...+...+||+| +++++|+|+..|+++.+.+.
T Consensus        86 ~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           86 AKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             CCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence                              3355777899999 79999999999999998653

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.41  E-value=4.9e-13  Score=102.40  Aligned_cols=97  Identities=20%  Similarity=0.247  Sum_probs=80.8

Q ss_pred             cccccccccccCCC--eEEE--cCCCCHHHHHHHHHHcCCCEEEEe--eCCCcEEEEEeHHHHHhcccc-----------
Q 030127           81 GVYTVGDFMTTKEE--LHVV--KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSI-----------  143 (182)
Q Consensus        81 ~~~~V~diM~~~~~--~~~v--~~~~tl~ea~~~m~~~~~~~lPVv--D~~g~lvGiVt~~Dll~~~~~-----------  143 (182)
                      ...+|+++|++..+  +.++  .+++++.+|++.|.+++++.+||+  |++|+++|+|+.+|++.....           
T Consensus         9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~   88 (185)
T 2j9l_A            9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST   88 (185)
T ss_dssp             CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTT
T ss_pred             ccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcccc
Confidence            56799999998211  7888  999999999999999999999999  778999999999999864210           


Q ss_pred             -----------------CC--------------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          144 -----------------SG--------------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       144 -----------------~~--------------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                       ..                          |...+...+||++ +|+++|+||+.|+++.+.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A           89 SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             CEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                             00                          3355677899998 8999999999999998865

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.40  E-value=3.8e-13  Score=110.53  Aligned_cols=97  Identities=18%  Similarity=0.290  Sum_probs=84.2

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc-----------cC----
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-----------IS----  144 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~-----------~~----  144 (182)
                      ....+++++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++...           ..    
T Consensus       153 ~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~  230 (296)
T 3ddj_A          153 DEIFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVK  230 (296)
T ss_dssp             CCCCBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHH
T ss_pred             cccccHHHhhcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHH
Confidence            345689999998  8999999999999999999999999999999999999999999986532           00    


Q ss_pred             -----C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          145 -----G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       145 -----~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                           .                |...+...+||+|++++++|+||+.|+++.+.+
T Consensus       231 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~  285 (296)
T 3ddj_A          231 DVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH  285 (296)
T ss_dssp             HHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             HHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHH
Confidence                 0                345677789999999999999999999999865

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.39  E-value=5.8e-13  Score=107.27  Aligned_cols=57  Identities=23%  Similarity=0.419  Sum_probs=53.6

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhc
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~  140 (182)
                      ..+|+|+|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++.
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~   62 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITAT   62 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence            4589999998  89999999999999999999999999999988999999999999754

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.38  E-value=2.1e-12  Score=106.10  Aligned_cols=94  Identities=24%  Similarity=0.268  Sum_probs=82.3

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC----------------
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----------------  145 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~----------------  145 (182)
                      ..+++++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|++.......                
T Consensus        92 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v  169 (296)
T 3ddj_A           92 TTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTI  169 (296)
T ss_dssp             TSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCE
T ss_pred             cccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEE
Confidence            5689999999  8999999999999999999999999999998999999999999987433110                


Q ss_pred             ------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                                  +...+...+||+|++++++|++|..|+++.+.
T Consensus       170 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          170 YKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             ETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence                        33556778999999999999999999998875

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.34  E-value=7.8e-13  Score=107.02  Aligned_cols=94  Identities=18%  Similarity=0.347  Sum_probs=80.6

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-----------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-----------------  143 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-----------------  143 (182)
                      ...+++++|++  ++.++.+++++.++++.|.+++++.+||+ ++|+++|+||.+|+++....                 
T Consensus       146 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~  222 (280)
T 3kh5_A          146 ENEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITN  222 (280)
T ss_dssp             TTCBSGGGCBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHH
T ss_pred             CCCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhC
Confidence            34589999998  89999999999999999999999999999 58999999999999865421                 


Q ss_pred             C--------C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          144 S--------G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       144 ~--------~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                      .        .                |...+...+||+|++|+++|+||..|+++.++
T Consensus       223 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~la  280 (280)
T 3kh5_A          223 VRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYFA  280 (280)
T ss_dssp             CBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGGC
T ss_pred             CcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhhC
Confidence            0        0                34567788999999999999999999998763

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.34  E-value=3.1e-12  Score=105.02  Aligned_cols=58  Identities=22%  Similarity=0.405  Sum_probs=53.5

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC--CcEEEEEeHHHHHh
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA  139 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~--g~lvGiVt~~Dll~  139 (182)
                      ...++|+|+|++  +++++.+++++.+|+++|.+++++.+||||++  ++++|+|+.+||+.
T Consensus        10 ~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~   69 (250)
T 2d4z_A           10 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEG   69 (250)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             cCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHH
Confidence            356799999999  99999999999999999999999999999864  68999999999974

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.32  E-value=4.2e-12  Score=105.48  Aligned_cols=96  Identities=23%  Similarity=0.311  Sum_probs=82.5

Q ss_pred             cccccccc---cccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc--------------
Q 030127           81 GVYTVGDF---MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--------------  143 (182)
Q Consensus        81 ~~~~V~di---M~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~--------------  143 (182)
                      ...+++++   |.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++....              
T Consensus       185 ~~~~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m  262 (323)
T 3t4n_C          185 LKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEAL  262 (323)
T ss_dssp             CCSBGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHTTSBHHHHG
T ss_pred             hhCcHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhccCCHHHHH
Confidence            44589999   888  89999999999999999999999999999989999999999999753211              


Q ss_pred             -C------C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          144 -S------G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       144 -~------~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                       .      .                |...+...+||+|++++++|+||..|+++.+..
T Consensus       263 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          263 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             GGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             hhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence             0      1                345677889999999999999999999998754

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.31  E-value=6.5e-12  Score=101.57  Aligned_cols=94  Identities=21%  Similarity=0.347  Sum_probs=80.5

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-------------C---
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------G---  145 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-------------~---  145 (182)
                      ..+++++|++  ++.++.+++++.++++.|.+++++.+||+|++|+++|++|.+|+++.....             .   
T Consensus        83 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~  160 (280)
T 3kh5_A           83 NEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIV  160 (280)
T ss_dssp             TSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCC
T ss_pred             hhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeE
Confidence            4589999998  899999999999999999999999999999999999999999998642210             0   


Q ss_pred             -------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 -------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 -------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                   +...+...+||+ ++++++|+++..|+++.+.+
T Consensus       161 v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~  205 (280)
T 3kh5_A          161 ATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGS  205 (280)
T ss_dssp             BCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTS
T ss_pred             ECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhh
Confidence                         334566789999 67999999999999998753

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.30  E-value=7.6e-12  Score=111.03  Aligned_cols=98  Identities=23%  Similarity=0.263  Sum_probs=83.2

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHc-----CCCEEEEeeCCCcEEEEEeHHHHHhccccCC--------
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISG--------  145 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~-----~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~--------  145 (182)
                      .....+++++|++  +++++++++++.++++.|+++     +++.+||+|++++++|+|+.+|++.......        
T Consensus       151 ~~~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~~~~~v~dim~~~  228 (473)
T 2zy9_A          151 RYEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADPRTRVAEIMNPK  228 (473)
T ss_dssp             TSCTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSCTTSBGGGTSBSS
T ss_pred             cCCCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCCCCCcHHHHhCCC
Confidence            3456789999999  999999999999999999986     4789999998899999999999985422110        


Q ss_pred             ----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                      |.+++...+||+|++|+++|+||.+|+++.+..
T Consensus       229 ~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          229 VVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             CCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence                            446677899999999999999999999988754

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.29  E-value=3.9e-12  Score=114.01  Aligned_cols=95  Identities=15%  Similarity=0.195  Sum_probs=79.9

Q ss_pred             cccccccccccCCCeEEEcCC-CCHHHHHHHHHHcCCCEEEEee-CCCcEEEEEeHHHHHhccccC--------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPT-TTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSIS--------------  144 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~-~tl~ea~~~m~~~~~~~lPVvD-~~g~lvGiVt~~Dll~~~~~~--------------  144 (182)
                      ...+|+++|++  +++++.++ +++.+|+++|.+++++.+||+| ++|+++|+||.+||++.....              
T Consensus       382 ~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~~  459 (527)
T 3pc3_A          382 WSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNK  459 (527)
T ss_dssp             TTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEET
T ss_pred             cCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHhcC
Confidence            46799999998  89999999 9999999999999999999999 789999999999998542210              


Q ss_pred             C----------------CccCCCceeEeecCC----CcEEEEEeHHHHHHHhhhc
Q 030127          145 G----------------SGRADNSMFPEVDST----WKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       145 ~----------------~~~~~~~~~pVvd~~----~k~~GiVt~~dil~~l~~~  179 (182)
                      .                |  ......||+|++    ++++|+||+.|+++.+.+.
T Consensus       460 ~~~~v~~~~~l~~a~~~m--~~~~~~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          460 RVIRLNESEILGKLARVL--EVDPSVLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             TCCEEETTSBHHHHHHHH--TTCSEEEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             CCeEECCCCcHHHHHHHH--hhCCEEEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence            0                2  233357999984    8999999999999998764

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.26  E-value=3e-12  Score=104.01  Aligned_cols=93  Identities=23%  Similarity=0.234  Sum_probs=65.4

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------------  145 (182)
                      ++|+++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|++.......                 
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~~~~~~v~~~m~~~~~~v~~~~~   78 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDT   78 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC----------CCCBSCCCEEETTSB
T ss_pred             CchHHhccC--CCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhhhccCCHHHHcCCCCcEECCCCc
Confidence            478999998  8999999999999999999999999999998899999999999875432110                 


Q ss_pred             -------CccCCCceeEeecCCCcEEEEEeHHHHHH-Hhh
Q 030127          146 -------SGRADNSMFPEVDSTWKVHSTRCRSCLVK-PMG  177 (182)
Q Consensus       146 -------~~~~~~~~~pVvd~~~k~~GiVt~~dil~-~l~  177 (182)
                             +...+...+||+|++++++|++|..|+++ .+.
T Consensus        79 l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~  118 (282)
T 2yzq_A           79 LKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA  118 (282)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHh
Confidence                   33556778999998899999999999998 664

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.25  E-value=2.2e-11  Score=98.80  Aligned_cols=116  Identities=18%  Similarity=0.174  Sum_probs=83.8

Q ss_pred             ccchhhhhhhcccCcccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEE
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvG  130 (182)
                      +.+++++..++.     .|.+...++.......+++++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|
T Consensus        33 ~~~pV~d~~~~~-----~Giv~~~dl~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~G  105 (282)
T 2yzq_A           33 RSFPVVNKEGKL-----VGIISVKRILVNPDEEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVG  105 (282)
T ss_dssp             CEEEEECTTCCE-----EEEEESSCC----------CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEE
T ss_pred             CeEEEEcCCCcE-----EEEEEHHHHHhhhccCCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEE
Confidence            345555543322     344455555444456789999998  8999999999999999999999999999998899999


Q ss_pred             EEeHHHHHh-ccccC---------C---------------------CccCCCceeEeecCCCcEEEEEeHHHHH
Q 030127          131 LVSDYDLLA-LDSIS---------G---------------------SGRADNSMFPEVDSTWKVHSTRCRSCLV  173 (182)
Q Consensus       131 iVt~~Dll~-~~~~~---------~---------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil  173 (182)
                      +||.+|+++ .....         .                     +...+...+||+|++++++|+++..|++
T Consensus       106 iit~~di~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          106 ILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL  179 (282)
T ss_dssp             EEEHHHHHHHTTTTCSGGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG
T ss_pred             EEEHHHHHHHHHhccCCcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHh
Confidence            999999987 43311         0                     2244566799999889999999999998

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.22  E-value=3e-11  Score=100.69  Aligned_cols=97  Identities=18%  Similarity=0.206  Sum_probs=80.5

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccc-----------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS-----------------  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~-----------------  142 (182)
                      ...+|+|+|+++.+++++.+++++.+|++.|.+++++++||+|++ ++++|+|+.+|++....                 
T Consensus        33 ~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~  112 (330)
T 2v8q_E           33 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHK  112 (330)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCB
T ss_pred             HcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhcc
Confidence            557999999544489999999999999999999999999999987 79999999999875321                 


Q ss_pred             ------------cCC----------------CccCCCceeEeecC-CCcEEEEEeHHHHHHHhh
Q 030127          143 ------------ISG----------------SGRADNSMFPEVDS-TWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       143 ------------~~~----------------~~~~~~~~~pVvd~-~~k~~GiVt~~dil~~l~  177 (182)
                                  ...                +...+...+||+|+ +++++|++|..|+++.+.
T Consensus       113 ~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~  176 (330)
T 2v8q_E          113 IETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  176 (330)
T ss_dssp             HHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHH
Confidence                        001                23446677999998 899999999999998764

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.21  E-value=5.6e-11  Score=99.05  Aligned_cols=95  Identities=16%  Similarity=0.190  Sum_probs=81.1

Q ss_pred             cccccc---ccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc---------------
Q 030127           82 VYTVGD---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---------------  143 (182)
Q Consensus        82 ~~~V~d---iM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~---------------  143 (182)
                      ..++++   +|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++....               
T Consensus       181 ~~~v~~l~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~  258 (334)
T 2qrd_G          181 RVPLNQMTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALL  258 (334)
T ss_dssp             CCBGGGSSCSBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCGGGGGSBHHHHHT
T ss_pred             hCcHHHhCCcccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccccccccCcHHHHHh
Confidence            467888   4888  89999999999999999999999999999988999999999999863211               


Q ss_pred             C------C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          144 S------G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       144 ~------~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                      .      .                |...+...+||+|++|+++|+||..|+++.+..
T Consensus       259 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~  315 (334)
T 2qrd_G          259 KRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY  315 (334)
T ss_dssp             TCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHS
T ss_pred             cccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHh
Confidence            0      1                335577789999989999999999999998865

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.15  E-value=5.7e-12  Score=115.38  Aligned_cols=97  Identities=19%  Similarity=0.049  Sum_probs=82.1

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHH-HcCCCEEEEeeCCCcEEEEEeHHHHHhccccC---------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILV-EKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---------------  144 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~-~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~---------------  144 (182)
                      .+++|+|+|+++.++.+++++++++|+.+.|. +++++.+||+|++|+++|+|+.+|+++.....               
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence            67899999994448999999999999999999 79999999999889999999999998653211               


Q ss_pred             -----------------------------------------C---------------------CccCCCceeEeecCCCc
Q 030127          145 -----------------------------------------G---------------------SGRADNSMFPEVDSTWK  162 (182)
Q Consensus       145 -----------------------------------------~---------------------~~~~~~~~~pVvd~~~k  162 (182)
                                                               .                     |.+++...+||+ ++|+
T Consensus       531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~  609 (632)
T 3org_A          531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGK  609 (632)
T ss_dssp             ----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTE
T ss_pred             ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCE
Confidence                                                     0                     224456789999 7899


Q ss_pred             EEEEEeHHHHHHHhhh
Q 030127          163 VHSTRCRSCLVKPMGR  178 (182)
Q Consensus       163 ~~GiVt~~dil~~l~~  178 (182)
                      ++|+||++|+++.+.+
T Consensus       610 lvGIVT~~Dll~~~~~  625 (632)
T 3org_A          610 LVGIVEREDVAYGYSN  625 (632)
T ss_dssp             EEEEEEGGGTEECCCC
T ss_pred             EEEEEehhhHHHHHhh
Confidence            9999999999888765

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.14  E-value=3.4e-11  Score=107.52  Aligned_cols=91  Identities=18%  Similarity=0.274  Sum_probs=70.2

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc-----------c---------
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-----------I---------  143 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~-----------~---------  143 (182)
                      +++++|+.  +++++.+++++.+++++|.+++++.+||+|++++++|+||.+|++....           .         
T Consensus        90 ~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~~~~~~v~diM~p~~~~vtv~~~  167 (496)
T 4fxs_A           90 IFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVTDLTKSVAAVMTPKERLATVKEG  167 (496)
T ss_dssp             HCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCCCTTSBGGGTSEEGGGCCEEECC
T ss_pred             cccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcccCCCcHHHHhcCCCCCEEECCC
Confidence            56778998  9999999999999999999999999999998899999999999973110           0         


Q ss_pred             -------CCCccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          144 -------SGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       144 -------~~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                             ..+.+++...+||+|+++++.|+||.+|+++..
T Consensus       168 ~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          168 ATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             ----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence                   114566778899999999999999999999864

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.14  E-value=9.1e-11  Score=105.14  Aligned_cols=93  Identities=19%  Similarity=0.282  Sum_probs=77.5

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC--CCcEEEEEeHHHHHhccccC----------C------
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSIS----------G------  145 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~--~g~lvGiVt~~Dll~~~~~~----------~------  145 (182)
                      +.+++|.+  +++++.+++++.+++++|.+++++.+||+|+  +++++|+||.+|++......          .      
T Consensus       114 ~~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~~~~~~~V~~vM~~~~~vtv~~  191 (511)
T 3usb_A          114 RSESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFIQDYSIKISDVMTKEQLITAPV  191 (511)
T ss_dssp             TSSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTCCCSSSBHHHHCCCCCCCCEET
T ss_pred             cccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhhccCCCcHHHhcccCCCEEECC
Confidence            44556666  8999999999999999999999999999998  89999999999997421100          0      


Q ss_pred             ----------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ----------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ----------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                +.+.+...+||+|+++++.|+||.+|+++.+..
T Consensus       192 ~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          192 GTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             TCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence                      334567789999999999999999999998754

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.13  E-value=1.5e-10  Score=96.38  Aligned_cols=94  Identities=24%  Similarity=0.354  Sum_probs=78.3

Q ss_pred             cccccc--cc-cCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC---------------
Q 030127           83 YTVGDF--MT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---------------  144 (182)
Q Consensus        83 ~~V~di--M~-~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~---------------  144 (182)
                      .+++++  |. +  ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++.....               
T Consensus       190 ~~v~~~~v~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~  267 (330)
T 2v8q_E          190 KSLEELQIGTYA--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQH  267 (330)
T ss_dssp             SBHHHHTCSBCS--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGG
T ss_pred             CCHHHhcccCcC--CceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHhc
Confidence            345555  54 5  789999999999999999999999999999889999999999998654311               


Q ss_pred             ------C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          145 ------G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       145 ------~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                            .                |...+...+||+|++|+++|+||..|+++.+..
T Consensus       268 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          268 RSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             CCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             cccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Confidence                  0                234567789999999999999999999998865

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.08  E-value=3.1e-10  Score=94.52  Aligned_cols=97  Identities=21%  Similarity=0.218  Sum_probs=80.0

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccc-----------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS-----------------  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~-----------------  142 (182)
                      ...+|.|+|+++.+++++.+++++.+|++.|.+++++.+||+|++ ++++|+|+.+|++....                 
T Consensus        20 ~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~   99 (334)
T 2qrd_G           20 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDK   99 (334)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGS
T ss_pred             hcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhh
Confidence            457999999886568899999999999999999999999999976 89999999999875320                 


Q ss_pred             --------------cCC------------------CccCCCceeEeecCCCc-----EEEEEeHHHHHHHhh
Q 030127          143 --------------ISG------------------SGRADNSMFPEVDSTWK-----VHSTRCRSCLVKPMG  177 (182)
Q Consensus       143 --------------~~~------------------~~~~~~~~~pVvd~~~k-----~~GiVt~~dil~~l~  177 (182)
                                    ...                  +...+...+||+++++.     ++|++|..|+++.+.
T Consensus       100 ~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~  171 (334)
T 2qrd_G          100 FRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  171 (334)
T ss_dssp             CBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHH
T ss_pred             hchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHH
Confidence                          000                  23456778999987654     999999999998764

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.05  E-value=3.5e-10  Score=83.06  Aligned_cols=89  Identities=15%  Similarity=0.067  Sum_probs=64.8

Q ss_pred             ccchhhhhh-hcccCcccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEE
Q 030127           51 TSSDRVSAL-RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (182)
Q Consensus        51 r~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lv  129 (182)
                      .++++++.. ++..|.+....+............+++++|.+   +.++.+++++.+|++.|.++++..+||+|++|+++
T Consensus        37 ~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lv  113 (136)
T 3lfr_A           37 SRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLRP---ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVA  113 (136)
T ss_dssp             SEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCBC---CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEE
T ss_pred             CEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEE
Confidence            345555543 33333333333322211123456789999965   78999999999999999999999999999899999


Q ss_pred             EEEeHHHHHhccc
Q 030127          130 GLVSDYDLLALDS  142 (182)
Q Consensus       130 GiVt~~Dll~~~~  142 (182)
                      |+||.+|+++...
T Consensus       114 Giit~~Dil~~l~  126 (136)
T 3lfr_A          114 GLVTIEDVLEQIV  126 (136)
T ss_dssp             EEEEHHHHHTTC-
T ss_pred             EEEEHHHHHHHHh
Confidence            9999999998754

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.04  E-value=3.9e-10  Score=99.97  Aligned_cols=92  Identities=20%  Similarity=0.297  Sum_probs=79.2

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEee--CCCcEEEEEeHHHHHhcccc-----------------C
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSI-----------------S  144 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD--~~g~lvGiVt~~Dll~~~~~-----------------~  144 (182)
                      .++++|++  ++.++.+++++.++++.|.+++++.+||+|  ++++++|+|+.+|++.....                 .
T Consensus        91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~v~~  168 (491)
T 1zfj_A           91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAV  168 (491)
T ss_dssp             HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEET
T ss_pred             hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhccCCCcHHHHcCCCCCEEECC
Confidence            56889999  999999999999999999999999999999  78999999999999852100                 0


Q ss_pred             ---------CCccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          145 ---------GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       145 ---------~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                               .+...+...+||+|++++++|++|.+|+++.+.
T Consensus       169 ~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          169 GTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             TCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence                     033556678999999999999999999999876

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.04  E-value=2.8e-10  Score=94.36  Aligned_cols=92  Identities=16%  Similarity=0.205  Sum_probs=73.0

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCc-----EEEEEeHHHHHhccc---------------c-
Q 030127           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK-----LVGLVSDYDLLALDS---------------I-  143 (182)
Q Consensus        85 V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~-----lvGiVt~~Dll~~~~---------------~-  143 (182)
                      +.++|.+  +++++.+++++.+|++.|.+++++.+||+|++++     ++|+||.+|+++...               . 
T Consensus       116 ~~~~~~~--~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~  193 (323)
T 3t4n_C          116 ALGVDQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLN  193 (323)
T ss_dssp             HTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTT
T ss_pred             HhCCCCC--CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcC
Confidence            4445677  8999999999999999999999999999998775     999999999974321               0 


Q ss_pred             ----CC----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          144 ----SG----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       144 ----~~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                          ..                |...+...+||+|++++++|+||..|+++.+..
T Consensus       194 ~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~  248 (323)
T 3t4n_C          194 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG  248 (323)
T ss_dssp             CSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHT
T ss_pred             CCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhh
Confidence                00                334567789999999999999999999987754

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.01  E-value=1.3e-10  Score=84.10  Aligned_cols=88  Identities=14%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             ccchhhhhhhcccCcccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEE
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvG  130 (182)
                      +++++++. ++..|.+....+............+++++|.+  ++.++.+++++.++++.|.++++..+||+|++|+++|
T Consensus        37 ~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~G  113 (128)
T 3gby_A           37 ACAPVLDG-ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEG  113 (128)
T ss_dssp             SEEEEEET-TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCB--CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEE
T ss_pred             cEEEEEEC-CEEEEEEEHHHHHHHHhhCCcccCcHHHHccC--CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEE
Confidence            45556655 44444433333222111112222679999998  8999999999999999999999999999998999999


Q ss_pred             EEeHHHHHhcc
Q 030127          131 LVSDYDLLALD  141 (182)
Q Consensus       131 iVt~~Dll~~~  141 (182)
                      +||.+|+++..
T Consensus       114 iit~~dll~~l  124 (128)
T 3gby_A          114 VVSRKRILGFL  124 (128)
T ss_dssp             EEEHHHHHHHH
T ss_pred             EEEHHHHHHHH
Confidence            99999998764

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.98  E-value=7.8e-10  Score=87.55  Aligned_cols=73  Identities=23%  Similarity=0.235  Sum_probs=63.5

Q ss_pred             CcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        68 ~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      -|.+...++.......+++++|++  ++.++++++++.++++.|.++++..+||+|++|+++|+||.+|++....
T Consensus       101 vGivt~~dll~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          101 LGTVRRYDIFKHEPHEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVR  173 (205)
T ss_dssp             EEEEEHHHHTTSCTTSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHhCCCcchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence            355556665445567799999998  8999999999999999999999999999999999999999999987654

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.98  E-value=1.7e-09  Score=71.90  Aligned_cols=48  Identities=27%  Similarity=0.396  Sum_probs=43.7

Q ss_pred             eEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        95 ~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      ++++.+++++.+|+++|.+++++++||+| +|+++||+|.+|+++....
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~   49 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVA   49 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence            68999999999999999999999999998 6899999999999865433

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.98  E-value=6.1e-10  Score=84.72  Aligned_cols=60  Identities=27%  Similarity=0.347  Sum_probs=55.2

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      ...+++++|++  +++++.+++++.+|++.|.+++++++||+| +|+++|+||.+||+++...
T Consensus       103 ~~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A          103 RKLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             TTCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSCC
T ss_pred             cccchhhhccc--CcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence            35689999999  999999999999999999999999999999 6999999999999987643

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.97  E-value=1.3e-09  Score=78.82  Aligned_cols=59  Identities=27%  Similarity=0.297  Sum_probs=53.7

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ....+++++|.+   +.++.+++++.+|++.|.++++..+||+|++|+++|+||.+|+++..
T Consensus        66 ~~~~~v~~~m~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           66 AEAFSMDKVLRT---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             CCCCCHHHHCBC---CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             CCCCCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            356789999954   67899999999999999999999999999999999999999999765

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.97  E-value=6.3e-11  Score=105.33  Aligned_cols=93  Identities=22%  Similarity=0.300  Sum_probs=6.7

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc---------c-----------
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS---------I-----------  143 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~---------~-----------  143 (182)
                      +++++|++  +++++.+++++.++++.|.+++++.+||+|++++++|+||.+|++....         .           
T Consensus        96 ~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~  173 (494)
T 1vrd_A           96 KTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKNLSKKIKDLMTPREKLIVAPPD  173 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhcCCCCcHHHHhCCCCCCeEECCC
Confidence            57889998  9999999999999999999999999999998899999999999974100         0           


Q ss_pred             -------CCCccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          144 -------SGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       144 -------~~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                             ..+...+...+||+|++++++|+|+..|+++.+..
T Consensus       174 ~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          174 ISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             -----------------------------------CHHHHTC
T ss_pred             CCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence                   01345566789999999999999999999998754

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.96  E-value=6e-10  Score=81.79  Aligned_cols=58  Identities=21%  Similarity=0.157  Sum_probs=54.0

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ...+++++|.+  ++.++.++ ++.+|++.|.+++++.+||+|++|+++|+||.+|+++..
T Consensus        69 ~~~~v~~~m~~--~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           69 LDGPAMPIANS--PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             TTSBSGGGCBC--CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             CCCCHHHHcCC--CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence            45789999998  89999999 999999999999999999999889999999999998754

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.96  E-value=5.2e-10  Score=79.76  Aligned_cols=58  Identities=28%  Similarity=0.424  Sum_probs=54.3

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      .+++++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++...
T Consensus        62 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           62 KTIEEIMTR--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             CBGGGTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred             cCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence            389999998  8999999999999999999999999999998899999999999998654

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.95  E-value=4.4e-10  Score=81.47  Aligned_cols=60  Identities=25%  Similarity=0.367  Sum_probs=55.3

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ...+++++|.+  ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++...
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           65 LETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             TTCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             cccCHHHHcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            45689999998  8999999999999999999999999999998899999999999987643

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.94  E-value=8.2e-11  Score=104.93  Aligned_cols=91  Identities=21%  Similarity=0.235  Sum_probs=3.5

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-------------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-------------------  143 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-------------------  143 (182)
                      .+++++|..  ++.++.+++++.+++++|.+++++.+||+| +++++|+||.+|+......                   
T Consensus        88 k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~~~~~~V~~vMtp~~~~vtv~~  164 (490)
T 4avf_A           88 KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKPNAGDTVAAIMTPKDKLVTARE  164 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhccccCCcHHHHhccCCCCEEECC
Confidence            467889998  999999999999999999999999999999 8999999999999631100                   


Q ss_pred             --------CCCccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          144 --------SGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       144 --------~~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                              ..+.+.+...+||+|++++++|+||++|+++..
T Consensus       165 ~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          165 GTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             -----------------------------------------
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhc
Confidence                    014456777899999999999999999999875

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.94  E-value=4.2e-10  Score=82.84  Aligned_cols=61  Identities=33%  Similarity=0.490  Sum_probs=55.7

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      ...++.++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++....
T Consensus        83 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           83 NGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             -CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence            45689999999  89999999999999999999999999999989999999999999986543

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.93  E-value=2.2e-09  Score=77.92  Aligned_cols=59  Identities=17%  Similarity=0.139  Sum_probs=52.7

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ...+++++|.+   +.++.+++++.+|++.|.++++..+||+|++|+++|+||.+|+++...
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            46689999954   789999999999999999999999999998899999999999997653

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.93  E-value=7.2e-10  Score=80.51  Aligned_cols=88  Identities=18%  Similarity=0.176  Sum_probs=64.6

Q ss_pred             ccchhhhhh-hcccCcccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEE
Q 030127           51 TSSDRVSAL-RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (182)
Q Consensus        51 r~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lv  129 (182)
                      +.+++++.. ++..|.+....+..... ......+++++|.   ++.++.+++++.+|++.|.++++..+||+|++|+++
T Consensus        40 ~~~pVvd~~~~~~~Givt~~dl~~~~~-~~~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~v  115 (130)
T 3i8n_A           40 SRPLVYSEQKDNIIGFVHRLELFKMQQ-SGSGQKQLGAVMR---PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVL  115 (130)
T ss_dssp             SCCEEESSSTTCEEEECCHHHHHHHHH-TTTTTSBHHHHSE---ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEE
T ss_pred             CEEEEEeCCCCcEEEEEEHHHHHHHHh-cCCCcCCHHHHhc---CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEE
Confidence            345566543 44444443333322211 1224668999994   588999999999999999999999999999899999


Q ss_pred             EEEeHHHHHhccc
Q 030127          130 GLVSDYDLLALDS  142 (182)
Q Consensus       130 GiVt~~Dll~~~~  142 (182)
                      |+||.+|+++...
T Consensus       116 Givt~~dil~~l~  128 (130)
T 3i8n_A          116 GLVTLEDIFEHLV  128 (130)
T ss_dssp             EEEEHHHHHHHHH
T ss_pred             EEEEHHHHHHHHc
Confidence            9999999997653

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.92  E-value=1e-09  Score=83.76  Aligned_cols=59  Identities=20%  Similarity=0.127  Sum_probs=54.8

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      ..+++++| +  ++.++.+++++.+|++.|.++++..+||+|++|+++|+||.+|+++....
T Consensus       106 ~~~v~~im-~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          106 RLELVDLV-K--NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             CCCGGGGC-B--CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             cccHHHHh-c--CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence            67899999 7  89999999999999999999999999999988999999999999987543

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.91  E-value=2.6e-09  Score=84.57  Aligned_cols=72  Identities=21%  Similarity=0.228  Sum_probs=62.1

Q ss_pred             CcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        68 ~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      .|.+...++.......+++++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++..
T Consensus        57 ~Givt~~dl~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~  128 (213)
T 1vr9_A           57 RGVVNKEDLLDLDLDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEAL  128 (213)
T ss_dssp             EEEEEGGGGTTSCTTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             EEEEEHHHHHhhcCCCcHHHHccC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHH
Confidence            455566665444456789999999  899999999999999999999999999999889999999999998754

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.91  E-value=1.2e-10  Score=104.10  Aligned_cols=93  Identities=18%  Similarity=0.079  Sum_probs=2.4

Q ss_pred             ccccc-cccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC---CcEEEEEeHHHHHhc-----------ccc-----
Q 030127           84 TVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLAL-----------DSI-----  143 (182)
Q Consensus        84 ~V~di-M~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~---g~lvGiVt~~Dll~~-----------~~~-----  143 (182)
                      +..++ |++  +++++.+++++.++++.|.+++++.+||+|++   |+++|+||.+|++..           ...     
T Consensus        97 ~~~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~~~~~~~  174 (503)
T 1me8_A           97 KNFKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLV  174 (503)
T ss_dssp             HTTTC---------------------------------------------------------------------------
T ss_pred             hhcccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhCCCCCCE
Confidence            44455 998  99999999999999999999999999999987   899999999999741           000     


Q ss_pred             ------------CCCccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          144 ------------SGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       144 ------------~~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                  ..|...+...+||+|++++++|+||.+|+++.+..
T Consensus       175 tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~  221 (503)
T 1me8_A          175 TAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVC  221 (503)
T ss_dssp             -----------------------------------------------
T ss_pred             EEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhc
Confidence                        01445677789999999999999999999988743

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.88  E-value=7e-10  Score=80.73  Aligned_cols=88  Identities=22%  Similarity=0.294  Sum_probs=64.9

Q ss_pred             cchhhhhhhcccCcccCcce-eccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcC-----CCEEEEeeCC
Q 030127           52 SSDRVSALRRSSAVFASGTL-TANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDD  125 (182)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~-----~~~lPVvD~~  125 (182)
                      ..++++..++..|.+....+ ...-........+++++|.+  ++.++.+++++.++++.|.+++     ++.+||+|++
T Consensus        41 ~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~  118 (138)
T 2p9m_A           41 SLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKN  118 (138)
T ss_dssp             EEEEECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSCS--SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTT
T ss_pred             EEEEECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhCC--CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCC
Confidence            44555544444444433333 22111223356789999998  8999999999999999999999     9999999988


Q ss_pred             CcEEEEEeHHHHHhcc
Q 030127          126 WKLVGLVSDYDLLALD  141 (182)
Q Consensus       126 g~lvGiVt~~Dll~~~  141 (182)
                      |+++|+||.+|+++..
T Consensus       119 g~~~Giit~~dll~~~  134 (138)
T 2p9m_A          119 NKLVGIISDGDIIRTI  134 (138)
T ss_dssp             SBEEEEEEHHHHHHHH
T ss_pred             CeEEEEEEHHHHHHHH
Confidence            9999999999998754

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.88  E-value=3.8e-09  Score=78.13  Aligned_cols=58  Identities=19%  Similarity=0.242  Sum_probs=54.0

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ..+++++| +  ++.++.+++++.+|++.|.++++..+||+|++|+++|+||.+|+++...
T Consensus        87 ~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           87 KIELEEIL-R--DIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             CCCGGGTC-B--CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHH
T ss_pred             CccHHHhc-C--CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            66899999 6  7999999999999999999999999999998899999999999997653

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.87  E-value=2e-09  Score=77.92  Aligned_cols=89  Identities=18%  Similarity=0.316  Sum_probs=65.5

Q ss_pred             ccchhhhhhhcccCcccCcceeccccC--CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcE
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANSAA--PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~l  128 (182)
                      +++++++..++..|.+....+....+.  ......+++++|.+  ++.++.+++++.++++.|.+++++.+||+|+ |++
T Consensus        40 ~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~  116 (133)
T 1y5h_A           40 GALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRL  116 (133)
T ss_dssp             SEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEE
T ss_pred             CeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEE
Confidence            345555544444444433333211111  12245789999998  8999999999999999999999999999997 999


Q ss_pred             EEEEeHHHHHhccc
Q 030127          129 VGLVSDYDLLALDS  142 (182)
Q Consensus       129 vGiVt~~Dll~~~~  142 (182)
                      +|+||.+|+++...
T Consensus       117 ~Giit~~dil~~l~  130 (133)
T 1y5h_A          117 VGIVTEADIARHLP  130 (133)
T ss_dssp             EEEEEHHHHHHTCC
T ss_pred             EEEEEHHHHHHHHH
Confidence            99999999998653

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.85  E-value=5e-09  Score=78.17  Aligned_cols=59  Identities=19%  Similarity=0.196  Sum_probs=54.8

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      ..+++++| +  ++.++.+++++.+|++.|.++++..+||+|++|+++|+||..|+++....
T Consensus        85 ~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           85 KAKISTIM-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             TSBGGGTC-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred             CCcHHHHh-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence            66899999 7  79999999999999999999999999999988999999999999987643

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.84  E-value=1.2e-09  Score=82.64  Aligned_cols=61  Identities=25%  Similarity=0.269  Sum_probs=55.9

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      ....+++++|.+  ++.++.+++++.++++.|.+++++.+||+|+ |+++|+||..|+++....
T Consensus        90 ~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           90 SLQQSVSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             GGTSBGGGTSBS--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred             cccCCHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence            346789999998  8999999999999999999999999999998 999999999999987543

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.84  E-value=2.8e-09  Score=79.96  Aligned_cols=55  Identities=20%  Similarity=0.194  Sum_probs=51.1

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHH
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll  138 (182)
                      ...+++++|.+   +.++.+++++.+|++.|.++++..+||+|++|+++|+||.+|++
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             CcccHHHHcCC---CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            46789999965   78999999999999999999999999999999999999999986

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.84  E-value=2e-09  Score=79.83  Aligned_cols=86  Identities=24%  Similarity=0.275  Sum_probs=63.6

Q ss_pred             ccchhhhhhhcccCcccCcceeccccCC-CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEE
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lv  129 (182)
                      .+.++++..++..|.+....+...-... .....+++++|.+  ++.++.+++++.++++.|.++++..+||+|++ +++
T Consensus        62 ~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~  138 (149)
T 3k2v_A           62 GMTAICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTR--GGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLL  138 (149)
T ss_dssp             SEEEEECTTCBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEE--SCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEE
T ss_pred             cEEEEECCCCcEEEEecHHHHHHHHhcCCCcccCcHHHHcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEE
Confidence            4456665444444444333332211111 2256789999999  89999999999999999999999999999965 999


Q ss_pred             EEEeHHHHHh
Q 030127          130 GLVSDYDLLA  139 (182)
Q Consensus       130 GiVt~~Dll~  139 (182)
                      |+||.+|+++
T Consensus       139 Giit~~dil~  148 (149)
T 3k2v_A          139 GVVHMHDLLR  148 (149)
T ss_dssp             EEEEHHHHTC
T ss_pred             EEEEHHHhhc
Confidence            9999999975

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.84  E-value=3.8e-09  Score=76.92  Aligned_cols=58  Identities=19%  Similarity=0.079  Sum_probs=53.0

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ..+++++| +  ++.++.+++++.++++.|.++++..+||+|++|+++|+||.+|+++...
T Consensus        69 ~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           69 KEIMLRAA-D--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             HHHHHHHS-B--CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             hhhHHHhc-c--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence            45799999 4  6899999999999999999999999999998999999999999998653

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.84  E-value=2.8e-09  Score=80.77  Aligned_cols=60  Identities=30%  Similarity=0.493  Sum_probs=55.7

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ...+++++|++  ++.++.+++++.+|++.|.++++..+||+|++|+++|+||.+|+++...
T Consensus        96 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~  155 (180)
T 3sl7_A           96 YGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAAL  155 (180)
T ss_dssp             TTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            45689999999  8999999999999999999999999999998999999999999997653

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.83  E-value=2.1e-09  Score=80.68  Aligned_cols=92  Identities=21%  Similarity=0.189  Sum_probs=67.6

Q ss_pred             ccchhhhhhhcccCcccCcceecccc-CCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCC---
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW---  126 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g---  126 (182)
                      .++++++..+...|.+....+..... .......+++++|.+..++.++.+++++.+|++.|.+++++.+||+|++|   
T Consensus        48 ~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~  127 (159)
T 3fv6_A           48 GTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGF  127 (159)
T ss_dssp             SEEEEECTTSCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSE
T ss_pred             CEEEEEcCCCcEEEEEeHHHHHHHhhccCcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcce
Confidence            45566665444444443333322211 12335678999998644688999999999999999999999999999888   


Q ss_pred             cEEEEEeHHHHHhccc
Q 030127          127 KLVGLVSDYDLLALDS  142 (182)
Q Consensus       127 ~lvGiVt~~Dll~~~~  142 (182)
                      +++|+||.+|+++...
T Consensus       128 ~~vGiit~~dil~~l~  143 (159)
T 3fv6_A          128 EVIGRVTKTNMTKILV  143 (159)
T ss_dssp             EEEEEEEHHHHHHHHH
T ss_pred             eEEEEEEHHHHHHHHH
Confidence            9999999999987643

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.83  E-value=3.2e-09  Score=81.64  Aligned_cols=62  Identities=24%  Similarity=0.251  Sum_probs=56.4

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      ....+++++|.+  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++....
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           72 PDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             cccCCHHHHhCC--CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            356689999998  89999999999999999999999999999988999999999999876543

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.83  E-value=3.3e-09  Score=77.23  Aligned_cols=89  Identities=21%  Similarity=0.241  Sum_probs=65.5

Q ss_pred             ccchhhhhhhcccCcccCcceecccc-CCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEE
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lv  129 (182)
                      .++++++..++..|.+....+....+ .......++.++|.+  ++.++.+++++.++++.|.+++++.+ |+|++|+++
T Consensus        39 ~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~  115 (138)
T 2yzi_A           39 GSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTR--NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIV  115 (138)
T ss_dssp             SEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEE
T ss_pred             CEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHhhC--CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEE
Confidence            34555554444444433333321111 112346789999998  89999999999999999999999999 999889999


Q ss_pred             EEEeHHHHHhccc
Q 030127          130 GLVSDYDLLALDS  142 (182)
Q Consensus       130 GiVt~~Dll~~~~  142 (182)
                      |+||..|+++...
T Consensus       116 Giit~~dil~~~~  128 (138)
T 2yzi_A          116 GIFTLSDLLEASR  128 (138)
T ss_dssp             EEEEHHHHHHHHH
T ss_pred             EEEEHHHHHHHHH
Confidence            9999999998654

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.82  E-value=4.3e-10  Score=100.72  Aligned_cols=87  Identities=29%  Similarity=0.337  Sum_probs=0.0

Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC---CCcEEEEEeHHHHHhccccC--------------------
Q 030127           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSIS--------------------  144 (182)
Q Consensus        88 iM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~---~g~lvGiVt~~Dll~~~~~~--------------------  144 (182)
                      .|..  +|+++.|+.|+.|++++|.+++++.+||+|+   +++|+||||.+|+.......                    
T Consensus       143 g~i~--dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~~~~V~evMT~~lvt~~~~~~le  220 (556)
T 4af0_A          143 GFIT--DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQDAETPIKSVMTTEVVTGSSPITLE  220 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccC--CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccccccceEhhhhcccceEEecCCCCHH
Confidence            4666  7999999999999999999999999999986   57999999999986432111                    


Q ss_pred             ----CCccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          145 ----GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       145 ----~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                          -+.+++...+||||+++++.|+||++|+++..
T Consensus       221 eA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          221 KANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             ------------------------------------
T ss_pred             HHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence                14456777899999999999999999998754

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.81  E-value=7.2e-09  Score=73.91  Aligned_cols=59  Identities=25%  Similarity=0.379  Sum_probs=54.7

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ...+++++|.+  ++.++.+++++.++++.|.+++++.+||+|+ |+++|+||.+|+++...
T Consensus        63 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           63 AEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKM  121 (125)
T ss_dssp             TTSBHHHHCBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC
T ss_pred             cccCHHHHcCC--CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence            46789999998  8999999999999999999999999999997 99999999999987653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.81  E-value=7e-09  Score=75.30  Aligned_cols=60  Identities=28%  Similarity=0.407  Sum_probs=55.3

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ....+++++|.+  ++.++.+++++.++++.|.+++++.+||+| +|+++|+||.+|+++...
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           71 VKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cccCCHHHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHH
Confidence            356789999999  899999999999999999999999999999 799999999999987653

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.81  E-value=2.7e-09  Score=85.62  Aligned_cols=59  Identities=27%  Similarity=0.465  Sum_probs=50.2

Q ss_pred             cccccccccc-cCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           81 GVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        81 ~~~~V~diM~-~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ...+++++|+ +  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++..
T Consensus       183 ~~~~v~~im~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          183 QSLPVDYVMTKD--NLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             GGSBHHHHSBCT--TCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC------
T ss_pred             cCCceeeEecCC--ccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            3568999999 6  899999999999999999999999999999899999999999998754

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.81  E-value=3.4e-09  Score=80.19  Aligned_cols=57  Identities=25%  Similarity=0.417  Sum_probs=52.1

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ...+|+++|.+  ++.++.+++++.+|++.|.++++  +||+|++|+++|+||.+|+++..
T Consensus        84 ~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~  140 (156)
T 3k6e_A           84 ADTDIVHMTKT--DVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAV  140 (156)
T ss_dssp             TTSBGGGTCBC--SCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHH
T ss_pred             cccCHHHhhcC--CceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHH
Confidence            46789999999  99999999999999999987764  99999999999999999999865

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.79  E-value=3.4e-09  Score=78.81  Aligned_cols=59  Identities=15%  Similarity=0.244  Sum_probs=53.7

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      ...++.++|.+  ++.++.+++++.+|++.|.++++  +||+|++|+++|+||.+|+++....
T Consensus        81 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           81 ETMKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             GTCBGGGTCBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred             cCCcHHHHhCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            46789999999  89999999999999999999987  9999988999999999999976543

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.78  E-value=2.8e-09  Score=80.22  Aligned_cols=58  Identities=22%  Similarity=0.373  Sum_probs=54.1

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ...++.++|.+  ++.++.+++++.+|++.|.+++++.+||+|+ |+++|+||..|+++..
T Consensus        76 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~  133 (160)
T 2o16_A           76 FETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIA  133 (160)
T ss_dssp             CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHH
T ss_pred             cccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            46789999998  8999999999999999999999999999997 9999999999998754

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.78  E-value=1e-08  Score=75.79  Aligned_cols=58  Identities=19%  Similarity=0.335  Sum_probs=53.2

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ...+++++|.+  ++.++.+++++.+|++.|.++++  +||+|++|+++|+||..|+++...
T Consensus        85 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~  142 (150)
T 3lqn_A           85 EEMKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLN  142 (150)
T ss_dssp             GGCBGGGTCBS--SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             hcCCHHHHhcC--CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHH
Confidence            46789999998  89999999999999999999887  999998999999999999997653

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.76  E-value=6.6e-09  Score=85.42  Aligned_cols=73  Identities=23%  Similarity=0.387  Sum_probs=61.7

Q ss_pred             CcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        68 ~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      -|.+...++.......+++++|.+  ++.++++++++.++++.|.++++..+||+|++|+++|+||..|++....
T Consensus       184 vGivt~~dll~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          184 KGVLSLRDLIVADPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             EEEEEHHHHHHSCTTCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC-
T ss_pred             EEEEEHHHHhcCCCCCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence            344555554333456799999998  8999999999999999999999999999998999999999999998654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.76  E-value=8.5e-09  Score=85.41  Aligned_cols=73  Identities=15%  Similarity=0.250  Sum_probs=63.7

Q ss_pred             CcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        68 ~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      -|.+...++.......+++++|.+  ++.++++++++.+|++.|.++++..+||+|++|+++|+||..|++....
T Consensus       186 vGivt~~dll~~~~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          186 VGVISLRDLIVNDDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             EEEEEHHHHTTSCTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHcCCCCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence            455666666555567799999998  8999999999999999999999999999998999999999999997653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.74  E-value=1.2e-08  Score=76.00  Aligned_cols=60  Identities=32%  Similarity=0.516  Sum_probs=55.8

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      ...+++++|.+  ++.++.+++++.++++.|.+++++.+||+| +|+++|+||.+|+++....
T Consensus        76 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           76 KATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             SSCBHHHHSBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHT
T ss_pred             cccCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            46789999999  899999999999999999999999999999 7999999999999987654

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.73  E-value=3.8e-09  Score=79.07  Aligned_cols=59  Identities=14%  Similarity=0.186  Sum_probs=53.3

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ....++.++|.+  ++.++.+++++.+|++.|.++++  +||+|++|+++|+||.+|+++...
T Consensus        83 ~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A           83 LDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             TTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             hccCCHHHhcCC--CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHH
Confidence            356789999999  89999999999999999998876  999998899999999999987643

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.71  E-value=1.7e-08  Score=73.47  Aligned_cols=62  Identities=19%  Similarity=0.301  Sum_probs=53.4

Q ss_pred             cccccccccccCC----CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKE----ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~----~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ...++.++|.+..    ++.++.+++++.++++.|.++++..+||+|++|+++|+||.+|+++...
T Consensus        75 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           75 LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            3568999997621    4789999999999999999999999999998899999999999987653

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.70  E-value=3.2e-08  Score=75.26  Aligned_cols=60  Identities=13%  Similarity=0.229  Sum_probs=55.2

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ....++.++|.+  ++.++.+++++.+|++.|.++++..+||+| +|+++|+||.+|+++...
T Consensus       105 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~  164 (185)
T 2j9l_A          105 PPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIA  164 (185)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            345789999998  899999999999999999999999999999 899999999999998654

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.68  E-value=2.4e-08  Score=74.59  Aligned_cols=60  Identities=22%  Similarity=0.345  Sum_probs=54.4

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ....+++++|.+   +.++.+++++.+|++.|.++++..+||+|++|+++|+||.+|+++...
T Consensus        93 ~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           93 LIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             CSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             HcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            356789999986   789999999999999999999999999998899999999999987653

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.67  E-value=3.5e-10  Score=101.09  Aligned_cols=93  Identities=24%  Similarity=0.316  Sum_probs=50.6

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC---CCcEEEEEeHHHHHhccc---c--------C--C-
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDS---I--------S--G-  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~---~g~lvGiVt~~Dll~~~~---~--------~--~-  145 (182)
                      .+++++|.+  +++++.+++++.+++++|.+++++.+||+|+   +++++|+||.+|+.....   .        .  . 
T Consensus       108 ~~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~~  185 (514)
T 1jcn_A          108 KNFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIEL  185 (514)
T ss_dssp             HTCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC----------------CCBCC
T ss_pred             hhhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCCC
Confidence            367899998  8999999999999999999999999999997   589999999999865310   0        0  0 


Q ss_pred             ---------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          146 ---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       146 ---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                                     +...+...+||+|++++++|+||+.|+++.+.
T Consensus       186 ~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          186 VVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             CCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             eEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence                           22345567899999999999999999887654

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.62  E-value=4.1e-09  Score=93.61  Aligned_cols=91  Identities=25%  Similarity=0.315  Sum_probs=2.1

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhc--------cc-----c-------
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL--------DS-----I-------  143 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~--------~~-----~-------  143 (182)
                      .+.+.|..  ++.++.+++++.++++.|.+++++.+||+|+ ++++|+|+.+|++..        ..     .       
T Consensus        94 ~~~~~m~~--~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~~~~~~v~~im~~~~~~v~~~~~l~  170 (486)
T 2cu0_A           94 RAERLIVE--DVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAAREGKLVKELMTKEVITVPESIEVE  170 (486)
T ss_dssp             TCC-----------------------------------------------------------------------------
T ss_pred             chhhcccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhccCCCCCHHHHccCCCeEECCcCcHH
Confidence            45678988  9999999999999999999999999999997 999999999998630        00     0       


Q ss_pred             ---CCCccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          144 ---SGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       144 ---~~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                         ..+...+...+||+|++++++|++|.+|+++...
T Consensus       171 eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          171 EALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             ------------------------------------C
T ss_pred             HHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence               1144556678999999999999999999998864

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.61  E-value=3.1e-08  Score=87.76  Aligned_cols=73  Identities=23%  Similarity=0.387  Sum_probs=62.7

Q ss_pred             CcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        68 ~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      -|.+..+++.....+.+++++|++  ++.++++++++.++++.|.++++..+||+|++|+++|+||.+|++....
T Consensus       204 vGiVt~~Dll~~~~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          204 KGVLSLRDLIVADPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             EEEEEHHHHHHSCTTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHhcCCCCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHH
Confidence            455555555334466799999998  8999999999999999999999999999999999999999999987643

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.58  E-value=6.2e-08  Score=72.14  Aligned_cols=58  Identities=17%  Similarity=0.116  Sum_probs=52.6

Q ss_pred             ccccccccccCCC------eEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           82 VYTVGDFMTTKEE------LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        82 ~~~V~diM~~~~~------~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ..++.++|.+  +      +.++.+++++.+|++.|.+++++.+||+| +|+++|+||.+|+++...
T Consensus        83 ~~~v~~~m~~--~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~  146 (164)
T 2pfi_A           83 QQCLQDILAR--GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAIS  146 (164)
T ss_dssp             CCBHHHHHHT--TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cchhhhhhcc--cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            3579999987  6      78999999999999999999999999999 799999999999987654

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.57  E-value=8.2e-08  Score=73.67  Aligned_cols=58  Identities=16%  Similarity=0.073  Sum_probs=51.6

Q ss_pred             ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      ..+++  |.+  ++.++.+++++.+|++.|.++++..+||+|++|+++|+||.+|++.....
T Consensus       100 ~~~v~--~~~--~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          100 RVRRN--RLR--DPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             SCCGG--GSB--CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred             cchhH--hcC--CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence            45677  445  68999999999999999999999999999989999999999999987653

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.54  E-value=5.5e-08  Score=88.97  Aligned_cols=56  Identities=21%  Similarity=0.045  Sum_probs=50.7

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      +++++|++  ++.++++++++.++++.|.+++++.+||+ ++|+++|+||.+|+++...
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECCC
T ss_pred             ccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHHh
Confidence            38899999  99999999999999999999999999999 5899999999999987643

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.41  E-value=2.5e-07  Score=75.64  Aligned_cols=53  Identities=15%  Similarity=0.045  Sum_probs=49.5

Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        87 diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      .+|.+  .++++.+++++.++..+|.+.+++++||++ +|+|+||||++||++++.
T Consensus       193 ~~md~--sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          193 CRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             SCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccccC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            47999  999999999999999999999999999998 799999999999998754

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.35  E-value=6.7e-07  Score=80.04  Aligned_cols=75  Identities=27%  Similarity=0.343  Sum_probs=62.1

Q ss_pred             CcceeccccC-CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           68 SGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        68 ~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      .|.+...++. ......+++++|++ ++++++++++++.++++.|.++++..+||+|++|+++|+||.+|+++....
T Consensus       159 vGiVt~rDl~~~~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          159 VGIITNRDMRFIQDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             EEEEEHHHHTTCCCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             EEEEEehHhhhhccCCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            3445555543 23456789999995 368999999999999999999999999999999999999999999976543

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.33  E-value=6.3e-08  Score=86.81  Aligned_cols=72  Identities=26%  Similarity=0.343  Sum_probs=0.0

Q ss_pred             CcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        68 ~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      -|.+...++.......+|+++|++  ++++++++.++++|.++|.++++..+||+|++|+|+|+||.+|+.+..
T Consensus       185 vGIvT~RD~rf~d~~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          185 LGIVTGRDVQFQDAETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             EEEEecccccccccceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence            455666666666677899999999  899999999999999999999999999999999999999999998654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.31  E-value=7.2e-08  Score=86.05  Aligned_cols=63  Identities=30%  Similarity=0.346  Sum_probs=0.0

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ....+|+++|++.++++++++++++.++++.|.++++..+||+|++|+++|+||.+|+++...
T Consensus       158 ~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          158 QTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             cccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhh
Confidence            456789999998223999999999999999999999999999999999999999999987654

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.29  E-value=1.2e-07  Score=84.41  Aligned_cols=74  Identities=28%  Similarity=0.375  Sum_probs=0.0

Q ss_pred             cceeccccC-CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           69 GTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        69 g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      |.+...++. ......+|+++|+++++++++++++++.+++++|.++++..+||+|++|+++|+||.+|+++...
T Consensus       132 GIVt~rDl~~~~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          132 GIVTGRDLRVKPNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             EEEEhHHhhhccccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence            334444442 23456789999994334899999999999999999999999999999999999999999998643

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.14  E-value=3.1e-07  Score=81.95  Aligned_cols=75  Identities=27%  Similarity=0.381  Sum_probs=50.4

Q ss_pred             CcceeccccC-CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           68 SGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        68 ~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      -|.+...++. ......++.++|+++++++++++++++.++++.|.++++..+||+|++|+++|+||.+|+++...
T Consensus       133 vGiVt~rDL~~~~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          133 VGIITGRDVRFVTDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             EEEEEHHHHTTCCCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred             EEEEEHHHHhhcccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence            3445555553 23456789999994334899999999999999999999999999999999999999999997543

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.12  E-value=3.2e-07  Score=81.38  Aligned_cols=62  Identities=34%  Similarity=0.541  Sum_probs=4.3

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ...++.++|++.+++.++.+++++.++++.|.++++..+||+|++|+++|+||.+|+++...
T Consensus       153 ~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          153 LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             --------------------------------------------------------CHHHHT
T ss_pred             CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhc
Confidence            45689999986446899999999999999999999999999999999999999999997654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.12  E-value=7.5e-07  Score=79.64  Aligned_cols=61  Identities=7%  Similarity=0.082  Sum_probs=53.0

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC----CcEEEEEeHHHHHhccccC
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD----WKLVGLVSDYDLLALDSIS  144 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~----g~lvGiVt~~Dll~~~~~~  144 (182)
                      ....+|+++|++  ++.++.+++++.+++++|.++++  +||+|++    |+++||||..||++.....
T Consensus       448 ~~~~~V~~im~~--~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          448 QQSDPAIKALNK--RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             CTTSBGGGGEET--TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             cCCCcHHHHhcC--CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence            446789999999  99999999999999999977664  7999984    9999999999999876543

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.05  E-value=6.9e-06  Score=72.58  Aligned_cols=61  Identities=26%  Similarity=0.365  Sum_probs=54.9

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ...+++++|++. ++.++++++++.++++.|.++++..+||+|++|+++|+||.+|+++...
T Consensus       150 ~~~~v~~im~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          150 YNAPISEHMTSE-HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             SSSBTTTSCCCS-CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHHcCCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence            456899999852 4788999999999999999999999999999999999999999997654

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.04  E-value=6.2e-07  Score=79.58  Aligned_cols=60  Identities=40%  Similarity=0.575  Sum_probs=0.4

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ...+++++|++  ++.++++++++.++++.|.++++..+||+|++|+++|+||.+|+++...
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             -------------------------------------------------------------C
T ss_pred             CCCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence            45689999998  8999999999999999999999999999999999999999999998654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.87  E-value=7.6e-07  Score=79.41  Aligned_cols=62  Identities=27%  Similarity=0.342  Sum_probs=43.4

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ...++.++|++..++.++.+++++.++++.|.++++..+||+|++|+++|+||.+|+++...
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             ----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence            45689999986446899999999999999999999999999999999999999999987643

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=91.79  E-value=0.17  Score=32.53  Aligned_cols=31  Identities=3%  Similarity=-0.062  Sum_probs=25.1

Q ss_pred             CccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          146 SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                      |.+++...+||+| +++++|++|..|+++.+.
T Consensus        18 M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A           18 LSRNKAGSAVVME-GDEILGVVTERDILDKVV   48 (70)
T ss_dssp             HHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTT
T ss_pred             HHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            4456777899997 589999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	3e-08
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	3e-08
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	8e-05
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	8e-08
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	3e-04
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	8e-08
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	6e-05
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	3e-07
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	3e-06
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	4e-07
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	7e-06
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	6e-07
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.001
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	9e-07
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	9e-07
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	3e-05
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	1e-06
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	1e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	2e-06
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	7e-06
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	6e-06
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	8e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	7e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	7e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	5e-05
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-05
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	3e-05
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	2e-05
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	0.002
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-05
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	0.003
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	3e-05
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	2e-04
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	5e-05
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	5e-04
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	7e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	9e-04
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	7e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	0.002
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	9e-05
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	2e-04
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	3e-04
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	2e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	7e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	0.002
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	0.001
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	0.002

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 47.8 bits (113), Expect = 3e-08
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + MT +E+L V     T+ EA EIL   +    P+++++ +LV +++  DL 
Sbjct: 62  FLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLK 116

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 48.0 bits (113), Expect = 3e-08
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D MT     H +  T T+++A  ++    I   P++D + KL+G+VS  DLLA    
Sbjct: 3   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES 60

Query: 144 SGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWWV 181
           S    A           ++V  T   S   +   +   
Sbjct: 61  SLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESA 98

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 38.7 bits (89), Expect = 8e-05
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V P   + E+   + + +I   PV+  D  LVG+++D D +
Sbjct: 86  TSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFV 127

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.7 bits (110), Expect = 8e-08
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +  +MT   +L  VKP+T+V EA  +++E  +    VI+DD  +VG  +  D++    +
Sbjct: 6   PIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV 63

Query: 144 SGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPM 176
            G             +    +       +++ M
Sbjct: 64  PGLPYDIPVERIMTRNLITANVNTPLGEVLRKM 96

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                 T + E L  + E RI    + ++  K+VG+ +  DLL
Sbjct: 81  ITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLL 122

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.1 bits (111), Expect = 8e-08
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                       +       T++  +  LVE  +    V+D+   + G+VS  D+L
Sbjct: 84  LQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 137

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 84  TVGDFM-TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           ++ +    T   + +V+ TT V  AL I V+ R++  PV+D+  ++V + S +D++ L +
Sbjct: 10  SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA 69

Query: 143 ISGSGRADNSM 153
                  D S+
Sbjct: 70  EKTYNNLDVSV 80

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.5 bits (107), Expect = 3e-07
 Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 83  YTVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             +GD  + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L
Sbjct: 6   IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL 62

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (100), Expect = 3e-06
 Identities = 10/43 (23%), Positives = 23/43 (53%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 92  YTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 134

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.2 bits (106), Expect = 4e-07
 Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 8/101 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-VIDDDWKLVGLVSDYDLLALDS 142
              D + T  +L V   +  V +A   LV   +   P         VG+++  D + +  
Sbjct: 14  RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINIL- 72

Query: 143 ISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKP-MGRWWVT 182
                              + H       +      +  V 
Sbjct: 73  -----HRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVC 108

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 7e-06
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 51  TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEI 110
           T +D ++ L R                  +                 + P  ++ +A+  
Sbjct: 64  TITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPL--VCISPNASLFDAVSS 121

Query: 111 LVEKRITGFPVIDDDW-KLVGLVSDYDLL 138
           L+  +I   PVID +    + +++   +L
Sbjct: 122 LIRNKIHRLPVIDPESGNTLYILTHKRIL 150

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.5 bits (104), Expect = 6e-07
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D+
Sbjct: 2   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDI 53

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.9 bits (79), Expect = 0.001
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + V    ++ E L ++ E ++   PVI +  +LVG+V++ D+ 
Sbjct: 78  YYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIA 119

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.2 bits (103), Expect = 9e-07
 Identities = 19/97 (19%), Positives = 35/97 (36%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TVG FM   +++  V+    ++ AL +L +   T  PV+D  ++L GL+    ++     
Sbjct: 3   TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG 62

Query: 144 SGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWW 180
                 +      V+        R         G   
Sbjct: 63  LERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGM 99

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 44.0 bits (103), Expect = 9e-07
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TV   +  K   +  + P  +V  A++ +    I    V+ D+   VG++++ D  
Sbjct: 3   TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKL-VGILTERDFS 57

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V    T ++ + ++ E R+   PV+DD  K++GL+S  DL+
Sbjct: 81  AYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 122

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.8 bits (102), Expect = 1e-06
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              + M    +   V   T ++EAL+++++  I   PV+D+  ++VG ++  ++L
Sbjct: 85  NASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 136

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V  V   ++ K    VV+  T ++E ++ ++E  +T    +  D KLVG++    LL
Sbjct: 3   VKDVCKLISLK--PTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLL 57

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD 136
            +  +      + +V   T +  AL+ L+       PV+D +  LVG+V + D
Sbjct: 5   EIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETD 55

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.9 bits (97), Expect = 7e-06
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT      V  P  TV E    + +  I   PVI  +  L+GL+ D+DLL
Sbjct: 100 PVAEIMTRDV--IVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.5 bits (96), Expect = 6e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           F         V     +  AL + +E +    PV+D++ +L G VS +D L
Sbjct: 63  FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFL 113

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.1 bits (95), Expect = 8e-06
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSD 134
           V  ++T   +  +V+ + TV E L  + + +     V D +    G+V+ 
Sbjct: 3   VKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNK 50

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 41.5 bits (96), Expect = 7e-06
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG 130
           ++ V  FM+T  ++  +     +D+A+++++ +     PVIDDD K+VG
Sbjct: 1   IFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVG 47

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (96), Expect = 7e-06
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135
            V   M +      V   TTV +A++I+ E  + G  V DD+   VGL+S+ 
Sbjct: 4   RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSER 53

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.5 bits (91), Expect = 5e-05
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               V +    L E  +    V+DD  ++VG+V+  DL 
Sbjct: 84  SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS 122

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 6/105 (5%)

Query: 84  TVGDFMTTKEELHVV----KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDL 137
              D M  +    ++    + + TV++   I+ E   +GFPV+   +  +LVG V   DL
Sbjct: 4   LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 63

Query: 138 LALDSISGSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWWVT 182
           +     +   +        +  T         +     +      
Sbjct: 64  IISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDL 108

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + +        V   T ++  ++I  +  +    V  +  +L+G+++  D+L
Sbjct: 101 KLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVL 152

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + D +     +  V      ++  + + +      PV D D  L+G+V+  D++
Sbjct: 67  IADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDII 118

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYD 136
           T G  MTT  E   +    TV  A+ +L  +      I    V+D +  LVG++S  D
Sbjct: 2   TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRD 57

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 79  RPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 129

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 85  VGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           +      T   L      T V + +++L EK I+  P+++ +  L+ +    D+
Sbjct: 3   LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDV 56

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.5 bits (91), Expect = 3e-05
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           V D M T  ++  +  T ++++ L   VE       V+ +  ++
Sbjct: 2   VEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRV 43

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             + P  T+ EA E +V+  +    V +DD +++G++S  D+L
Sbjct: 75  VTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISATDIL 116

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.7 bits (89), Expect = 5e-05
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 95  LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + VVK   T+ +A ++++E       V+D   K VG+++  D++
Sbjct: 70  VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.0 bits (82), Expect = 5e-04
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           V   MT       +    T + ALE+  + ++  FPV++ + 
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEG 42

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 38.7 bits (89), Expect = 7e-05
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
            V ++M T  ++  V     +++  +++ EK I    V+D + 
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK 45

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 35.6 bits (81), Expect = 9e-04
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSI 143
            ++ +  I   PV+DD   L G++S  D+  A+D +
Sbjct: 91  ALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.8 bits (89), Expect = 7e-05
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            + D+MT       V  T+    A+ I+V +     PV+D + K VG+V++ + L L
Sbjct: 75  PIIDYMTPNP--VTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLL 129

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 2/41 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
            +   M       ++     +  A + + E  I    V ++
Sbjct: 2   NIETLMIKN--PPILSKEDRLGSAFKKINEGGIGRIIVANE 40

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 38.8 bits (89), Expect = 9e-05
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLL 138
                E   V P  ++ +A   + + R    P+ID D       +V +++ Y +L
Sbjct: 111 GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL 165

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMF 154
            + P   V EA E++   RI+G P+++     KLVG++++ D+  +   +       +  
Sbjct: 9   FLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSE 68

Query: 155 PEV 157
             V
Sbjct: 69  HLV 71

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              T ++ A  IL E RI   P++D+  +L GL++  D+ 
Sbjct: 74  AVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE 113

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               +    +   T++ +   +     +    V     KLVG+V+  ++ 
Sbjct: 107 CRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMG-KLVGVVALAEIQ 155

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 36.0 bits (82), Expect = 7e-04
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYD 136
             G  MT   E   V+   TV+E L  L         I    V+D+  +L G++S  D
Sbjct: 2   EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRD 57

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 87  DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + M  K     V+  T  +E   ++ +   T  PV+D++ +LVG+V+  D+L
Sbjct: 69  EIMNPKV--VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 118

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V  T  V  A E +    I    V++ + +LVG++S  DL 
Sbjct: 77  ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 119

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 4/49 (8%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVG 130
              + +        +  T T+ E    L + R+    +    +  + V 
Sbjct: 2   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVA 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.69
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.68
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.65
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.65
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.64
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.64
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.63
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.63
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.62
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.61
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.61
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.6
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.58
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.56
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.56
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.53
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.53
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.52
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.51
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.51
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.5
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.48
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.46
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.44
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.34
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.33
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.29
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.17
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.1
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.07
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.05
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.05
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.05
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.02
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.01
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.93
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.92
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.88
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.88
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.88
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.87
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.84
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.82
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.78
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.77
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.75
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.73
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.72
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.67
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.63
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.57
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.41
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	85.72

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=4.3e-17  Score=118.98  Aligned_cols=95  Identities=20%  Similarity=0.278  Sum_probs=82.4

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------------  145 (182)
                      .+|+++|++.+++.++.+++++++|++.|.+++++++||+|++|+++|+++.+|+++......                 
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~   81 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVML   81 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSB
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccccccccccccccccccc
Confidence            479999988778999999999999999999999999999999999999999999986533210                 


Q ss_pred             ------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 ------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 ------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                        +.  +...+||+|++|+++|+||+.|+++.+++.
T Consensus        82 ~~~~~v~~~~~l~~~~~~~~--~~~~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          82 TDIPRLHINDPIMKGFGMVI--NNGFVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             CSCCEEETTSBHHHHHHHTT--TCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHH--hCCEEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence                              22  234699999999999999999999999874

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=1.2e-16  Score=115.20  Aligned_cols=94  Identities=21%  Similarity=0.272  Sum_probs=84.4

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------------  145 (182)
                      ++|+++|++  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++......                 
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~~~~v~~~~~~~~~~v~~~~~   78 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDN   78 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCTTSBSGGGCBCTTCCEETTSB
T ss_pred             CCchhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhccccccccccCccEEECCCCC
Confidence            579999999  9999999999999999999999999999999999999999999987543211                 


Q ss_pred             -------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 -------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 -------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                             +.+.+...+||+|++|+++|+||..|+++++.+
T Consensus        79 l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          79 ITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             HHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHH
Confidence                   457788899999999999999999999998865

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=4.2e-17  Score=117.87  Aligned_cols=94  Identities=22%  Similarity=0.210  Sum_probs=68.0

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------------  145 (182)
                      ++|+++|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|++.......                 
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~v~~~~~   78 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDT   78 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC----------CCCBSCCCEEETTSB
T ss_pred             CCcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhcccchhhccccceeecchhhH
Confidence            579999999  9999999999999999999999999999999999999999999986533211                 


Q ss_pred             -------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 -------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 -------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                             +.+.+...+||+|++++++|+||+.|+++++-.
T Consensus        79 l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          79 LKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             HHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHh
Confidence                   446677889999999999999999999988754

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=1.1e-16  Score=115.56  Aligned_cols=91  Identities=19%  Similarity=0.306  Sum_probs=78.7

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------------  145 (182)
                      .+++|+|++  +++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|++......+                 
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~~   78 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY   78 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred             CCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeeccce
Confidence            378999999  9999999999999999999999999999998999999999999875322111                 


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                                    |.+.+...+||+| +++++|+||+.|+++.+
T Consensus        79 ~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          79 YVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             CEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHTC
T ss_pred             eeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhhC
Confidence                          4466778899998 48999999999999865

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.64  E-value=2.6e-16  Score=116.38  Aligned_cols=94  Identities=23%  Similarity=0.236  Sum_probs=82.5

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------------  145 (182)
                      ++|+|+|++  ++.++++++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.....+                 
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~~   80 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIP   80 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCC
T ss_pred             EEHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcccccccccccccccccc
Confidence            689999999  9999999999999999999999999999999999999999999975322110                 


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                    +...+...+||+|++|+++|+|++.|+++.+.+
T Consensus        81 ~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          81 KVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             EEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             cccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhh
Confidence                          345677889999999999999999999998754

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.64  E-value=2.2e-16  Score=117.56  Aligned_cols=94  Identities=20%  Similarity=0.246  Sum_probs=81.6

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC---------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---------------  145 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~---------------  145 (182)
                      .+++|+++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|+||..|++.......               
T Consensus         2 ~~~~v~~~m~r--~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (156)
T d2yzqa1           2 KGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEW   79 (156)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC---------------
T ss_pred             CCCCHHHHhcC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhh
Confidence            46799999999  9999999999999999999999999999999999999999999964322100               


Q ss_pred             ---------------------------------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          146 ---------------------------------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       146 ---------------------------------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                                                                   |...+...+||+|++|+++|++|+.|+++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          80 ILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             -----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             hhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence                                                         3345777899999999999999999999875

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.63  E-value=7.6e-16  Score=111.57  Aligned_cols=87  Identities=21%  Similarity=0.360  Sum_probs=76.1

Q ss_pred             cccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC--CCcEEEEEeHHHHHhccccCC---------------------
Q 030127           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSISG---------------------  145 (182)
Q Consensus        89 M~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~--~g~lvGiVt~~Dll~~~~~~~---------------------  145 (182)
                      |..  +++++.+++++.+|+++|.+++++.+||+|+  +|+++|+||.+|+........                     
T Consensus         3 mi~--dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   80 (126)
T d1zfja4           3 VII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLE   80 (126)
T ss_dssp             TSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEETTCCHH
T ss_pred             CEe--CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCCceeeeeeccceeecCCCCCHH
Confidence            566  7899999999999999999999999999996  689999999999987544321                     


Q ss_pred             -----CccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          146 -----SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       146 -----~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                           +...+...+||+|++++++|+||+.|++++..
T Consensus        81 ~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          81 TAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             HHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                 44677888999999999999999999999875

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.63  E-value=1.1e-15  Score=110.84  Aligned_cols=95  Identities=17%  Similarity=0.258  Sum_probs=82.8

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC---------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---------------  145 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~---------------  145 (182)
                      ....|+++|++  +++++.+++++.+|++.|.+++++.+||+| +|+++|+|+.+|+++......               
T Consensus         2 ~~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~~   78 (127)
T d2ef7a1           2 EEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLI   78 (127)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECCC
T ss_pred             CccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhccccchhhhhhhhhcc
Confidence            35589999999  999999999999999999999999999998 589999999999986433211               


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                    +.+.+...+||+|++++++|++|+.|+++++..
T Consensus        79 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence                          446677889999999999999999999999864

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.62  E-value=5.8e-16  Score=113.92  Aligned_cols=93  Identities=27%  Similarity=0.300  Sum_probs=80.9

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------------------  144 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------------------  144 (182)
                      ++|+|+|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.....                  
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~   79 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE   79 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhH
Confidence            589999999  999999999999999999999999999999999999999999997543210                  


Q ss_pred             ----C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          145 ----G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       145 ----~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                          .                |...+...+||+|+ ++++|+||+.|+++.+.+
T Consensus        80 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          80 VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred             hhccccccccccchHHHHHHHHHHcCceEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence                0                44667778999985 899999999999998864

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.61  E-value=5.8e-16  Score=112.34  Aligned_cols=94  Identities=15%  Similarity=0.074  Sum_probs=81.6

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEe--eCCCcEEEEEeHHHHHhccccCC---------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSISG---------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVv--D~~g~lvGiVt~~Dll~~~~~~~---------------  145 (182)
                      ++|+|+|++  +++++++++++.+|++.|.+++++.+||+  |++++++|+++..|+.+......               
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~~   78 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPIT   78 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCCE
T ss_pred             CCHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccccccccccccccccee
Confidence            479999999  99999999999999999999999999999  44589999999999986533211               


Q ss_pred             -------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 -------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 -------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                   |...+...+||+|++|+++|+||..|+++.++.
T Consensus        79 v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~~  124 (131)
T d2riha1          79 VLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  124 (131)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             EeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence                         456788889999999999999999999987653

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.61  E-value=5.4e-16  Score=113.59  Aligned_cols=94  Identities=18%  Similarity=0.288  Sum_probs=82.7

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-------------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-------------------  143 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-------------------  143 (182)
                      ++|+++|++  ++.++.+++++.+|++.|.+++++++||+|++++++|+++..|+.+....                   
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im   79 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVM   79 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHS
T ss_pred             EeeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHHh
Confidence            589999999  99999999999999999999999999999999999999999998754211                   


Q ss_pred             -CC----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          144 -SG----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       144 -~~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                       ..                +...+...+||+|++++++|+||+.|+++.+.+
T Consensus        80 ~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          80 VTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             BCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             CcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHH
Confidence             00                446677889999999999999999999999865

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=2.8e-15  Score=109.34  Aligned_cols=94  Identities=24%  Similarity=0.284  Sum_probs=80.8

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------------  145 (182)
                      .+|+++|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.....+                 
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~~~   82 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLIT   82 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCCE
T ss_pred             CcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCccceeEeecccccccc
Confidence            489999999  9999999999999999999999999999999999999999999986432211                 


Q ss_pred             -------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          146 -------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       146 -------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                   |.+.+...+||+ ++++++|+||..|+++++.++
T Consensus        83 v~~~~~~~~~~~~m~~~~~~~l~V~-~~~~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1          83 ANVNTPLGEVLRKMAEHRIKHILIE-EEGKIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHHCC
T ss_pred             cCcchHHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHHHH
Confidence                         345566778865 568999999999999998764

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.58  E-value=3.6e-15  Score=108.37  Aligned_cols=93  Identities=25%  Similarity=0.237  Sum_probs=81.2

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcC-----CCEEEEeeCCCcEEEEEeHHHHHhccccCC-------------
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISG-------------  145 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~-----~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-------------  145 (182)
                      +++.+|++  +++++++++++.+|++.|++++     ++.+||+|++|+++|+++.+++........             
T Consensus         2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~~~~~v~~im~~~~~~v~   79 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDDDTLIADILNERVISVH   79 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSCTTSBHHHHSBSCCCCEE
T ss_pred             ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccccccEEhhhhccCCCccCC
Confidence            57889999  9999999999999999998874     689999999999999999999986533211             


Q ss_pred             -----------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 -----------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 -----------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                 |..++...+||+|++|+++|+||..|+++.+..
T Consensus        80 ~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          80 VGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence                       557788899999999999999999999988753

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.56  E-value=9.8e-16  Score=113.70  Aligned_cols=93  Identities=25%  Similarity=0.302  Sum_probs=81.1

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcC-----CCEEEEeeCCCcEEEEEeHHHHHhccccCC-------------
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISG-------------  145 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~-----~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-------------  145 (182)
                      +++++|++  +++++++++|+.+|++.|++++     +..+||+|++|+++|+++.+|+........             
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~~~~v~~im~~~~~~v~   79 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADPRTRVAEIMNPKVVYVR   79 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCTTCBSTTTSBSSCCCEE
T ss_pred             CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcccccchHHhcccCCccCC
Confidence            57899999  9999999999999999998774     678999999999999999999986533211             


Q ss_pred             -----------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 -----------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 -----------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                 |...+...+||+|++|+++|+||..|+++.+..
T Consensus        80 ~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          80 TDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             SSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHH
Confidence                       557788899999999999999999999988754

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.56  E-value=4.2e-15  Score=109.23  Aligned_cols=94  Identities=18%  Similarity=0.218  Sum_probs=81.1

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-------------------
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------------  144 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-------------------  144 (182)
                      .+.++|+.  +++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+.......                   
T Consensus         5 ~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (145)
T d1o50a3           5 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI   82 (145)
T ss_dssp             HHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred             EhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhcc
Confidence            46678998  999999999999999999999999999999999999999999997532100                   


Q ss_pred             -------------------------CCccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127          145 -------------------------GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       145 -------------------------~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~  179 (182)
                                               .|...+...+||+|++++++|+||..|+++.+.+.
T Consensus        83 ~~~~~~~~~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          83 AKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             SCBHHHHCBCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             ccCHHHHcCCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence                                     03356778899999999999999999999998763

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.53  E-value=1e-14  Score=106.01  Aligned_cols=92  Identities=16%  Similarity=0.145  Sum_probs=80.4

Q ss_pred             cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------
Q 030127           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------------  145 (182)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------------  145 (182)
                      ++|+++|++  +++++.+++++.+|++.|.+++++.+||+|+  +++|+++..|+++......                 
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   76 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPI   76 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBG
T ss_pred             CEeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccccchhhhhccccccCCH
Confidence            579999999  9999999999999999999999999999974  7999999999986542110                 


Q ss_pred             -----------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 -----------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 -----------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                             |...+...+||+|++|+++|+||..|+++.+..
T Consensus        77 ~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          77 IDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             GGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred             HHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence                                   345688889999999999999999999999865

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.53  E-value=1.3e-14  Score=104.98  Aligned_cols=91  Identities=23%  Similarity=0.282  Sum_probs=76.8

Q ss_pred             ccccccccC-CCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------
Q 030127           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------------  145 (182)
Q Consensus        84 ~V~diM~~~-~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------------  145 (182)
                      +|+|+|+.+ .+++++.+++++.+|++.|.+++++.+||+| +|+++|++|.+|+++.....+                 
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~~   81 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVA   81 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCC
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcccccceeEeeeccceeE
Confidence            689999743 2789999999999999999999999999998 789999999999975432111                 


Q ss_pred             --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                                    |.+.+...+||+| +++++|+||..|+++++
T Consensus        82 ~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          82 YVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             CBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             EeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence                          3456778899998 58999999999999875

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=2.1e-14  Score=105.23  Aligned_cols=88  Identities=22%  Similarity=0.275  Sum_probs=75.6

Q ss_pred             ccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC----------------------
Q 030127           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----------------------  145 (182)
Q Consensus        88 iM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~----------------------  145 (182)
                      +|..  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..|+++......                      
T Consensus        14 ~~~~--~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (140)
T d2nyca1          14 ITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGV   91 (140)
T ss_dssp             CBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC------
T ss_pred             ccCC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhhhhhhccccc
Confidence            4555  8999999999999999999999999999999999999999999986432211                      


Q ss_pred             ---------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          146 ---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       146 ---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                                     +...+...+||+|++++++|+||..|+++.+-
T Consensus        92 ~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          92 YTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence                           33557778999999999999999999999863

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.51  E-value=3.4e-14  Score=105.72  Aligned_cols=95  Identities=15%  Similarity=0.192  Sum_probs=79.2

Q ss_pred             cccccccc-CCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------
Q 030127           84 TVGDFMTT-KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-----------------  145 (182)
Q Consensus        84 ~V~diM~~-~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-----------------  145 (182)
                      ++++++.. ..+++++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|++.......                 
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~   81 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPA   81 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCC
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeec
Confidence            56666542 237999999999999999999999999999999999999999999975432110                 


Q ss_pred             --------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 --------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 --------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                          |...+...+||+|++++++|+||+.|+++.+..
T Consensus        82 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          82 NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             CSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHS
T ss_pred             ccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHc
Confidence                                346677889999999999999999999998754

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.51  E-value=2.5e-14  Score=102.58  Aligned_cols=89  Identities=16%  Similarity=0.175  Sum_probs=76.2

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC------------------
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG------------------  145 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------------  145 (182)
                      +|+|+|++  ++.++.+++++.+|++.|.+++++.+||++ +|+++|+||.+|+++......                  
T Consensus         1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~~v   77 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTI   77 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeeccccccccccccceeEeeecccccccc
Confidence            47899999  999999999999999999999999999988 589999999999986432211                  


Q ss_pred             ------------CccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                                  |.+.+...+||++ +++++|++|..|++++.
T Consensus        78 ~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          78 SPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             CTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence                        4466777888876 68999999999999874

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.50  E-value=1.9e-14  Score=106.54  Aligned_cols=94  Identities=17%  Similarity=0.195  Sum_probs=79.5

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC--CCcEEEEEeHHHHHhccccC--------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDSIS--------------  144 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~--~g~lvGiVt~~Dll~~~~~~--------------  144 (182)
                      .+++|+|+|++  +++++++++++.+|++.|.+++++.+||+|+  ++.++|+++..|++......              
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~   86 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLT   86 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCB
T ss_pred             cceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccc
Confidence            46799999999  9999999999999999999999999999984  37899999999997543210              


Q ss_pred             --------------------------------C---------CccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127          145 --------------------------------G---------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG  177 (182)
Q Consensus       145 --------------------------------~---------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~  177 (182)
                                                      .         |...+...+||++ +|+++|+||++||++++-
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          87 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             HHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence                                            0         3345778899987 589999999999999863

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=5.7e-14  Score=103.23  Aligned_cols=96  Identities=22%  Similarity=0.305  Sum_probs=79.2

Q ss_pred             ccccccccc-CCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC----------------
Q 030127           83 YTVGDFMTT-KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----------------  145 (182)
Q Consensus        83 ~~V~diM~~-~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~----------------  145 (182)
                      .++++++.. ..+++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|++.......                
T Consensus         9 ~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~   88 (145)
T d2v8qe1           9 KSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRS   88 (145)
T ss_dssp             SBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCC
T ss_pred             CCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhh
Confidence            356665432 127899999999999999999999999999999999999999999986543211                


Q ss_pred             ---------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          146 ---------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       146 ---------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                           |...+...+||+|++++++|+||..|+++.+-.
T Consensus        89 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          89 HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             hccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence                                 335677789999999999999999999998743

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.46  E-value=1.6e-15  Score=109.18  Aligned_cols=86  Identities=23%  Similarity=0.331  Sum_probs=42.0

Q ss_pred             cccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC---CCcEEEEEeHHHHHhccccCC--------------------
Q 030127           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISG--------------------  145 (182)
Q Consensus        89 M~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~---~g~lvGiVt~~Dll~~~~~~~--------------------  145 (182)
                      |.+  +++++.+++++.+|+++|.+++++++||+|+   +|+++|+||.+|+........                    
T Consensus         2 m~~--~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (120)
T d1jr1a4           2 FIT--DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAG   79 (120)
T ss_dssp             EEC--TTCC----CCCC--CCBC---------------CTTCCC----------------------CCSBTTTSCCEETT
T ss_pred             ccc--CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECCC
Confidence            556  7889999999999999999999999999985   579999999999864321100                    


Q ss_pred             ---------CccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127          146 ---------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPM  176 (182)
Q Consensus       146 ---------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l  176 (182)
                               |.+++...+||+|++++++|+||+.|++++.
T Consensus        80 ~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          80 ITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             CCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence                     5567778899999999999999999999863

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=8.4e-14  Score=103.57  Aligned_cols=99  Identities=17%  Similarity=0.202  Sum_probs=81.5

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC-CCcEEEEEeHHHHHhcccc----------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSI----------------  143 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~-~g~lvGiVt~~Dll~~~~~----------------  143 (182)
                      ...++.|+|.+..+++++..++++.+|++.|.+++++.+||+|+ +++++|+++..|++.....                
T Consensus        11 ~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~   90 (159)
T d2v8qe2          11 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHK   90 (159)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCB
T ss_pred             cCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhh
Confidence            45689999976557899999999999999999999999999975 5899999999999754211                


Q ss_pred             --------------------CC---------CccCCCceeEeec-CCCcEEEEEeHHHHHHHhhhc
Q 030127          144 --------------------SG---------SGRADNSMFPEVD-STWKVHSTRCRSCLVKPMGRW  179 (182)
Q Consensus       144 --------------------~~---------~~~~~~~~~pVvd-~~~k~~GiVt~~dil~~l~~~  179 (182)
                                          ..         |...+...+||+| +++++.|+||+.||++.+...
T Consensus        91 ~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~  156 (159)
T d2v8qe2          91 IETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF  156 (159)
T ss_dssp             HHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred             cccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHH
Confidence                                00         3455777899998 468999999999999988643

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.34  E-value=6.8e-13  Score=100.36  Aligned_cols=98  Identities=20%  Similarity=0.201  Sum_probs=80.9

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC-CCcEEEEEeHHHHHhcccc----------------
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDSI----------------  143 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~-~g~lvGiVt~~Dll~~~~~----------------  143 (182)
                      ...++.|+|.+..+++++.++.++.+|+..|.+++++++||+|+ +++++|++|..|++.....                
T Consensus        18 ~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~   97 (179)
T d2ooxe1          18 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDK   97 (179)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGG
T ss_pred             cCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhc
Confidence            44589999985447899999999999999999999999999995 4899999999999753210                


Q ss_pred             -----------------CC----------------CccCCCceeEeecCCC-----cEEEEEeHHHHHHHhhh
Q 030127          144 -----------------SG----------------SGRADNSMFPEVDSTW-----KVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       144 -----------------~~----------------~~~~~~~~~pVvd~~~-----k~~GiVt~~dil~~l~~  178 (182)
                                       ..                |...+...+||+|+++     +++|++|+.||++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~  170 (179)
T d2ooxe1          98 FRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM  170 (179)
T ss_dssp             SBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHT
T ss_pred             cchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHH
Confidence                             00                4467888999998664     59999999999998854

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-12  Score=98.56  Aligned_cols=95  Identities=18%  Similarity=0.237  Sum_probs=74.0

Q ss_pred             cccccccccCCCe----EEEcCCCCHHHHHHHHHHcCCCEEEEe--eCCCcEEEEEeHHHHHhccccC------------
Q 030127           83 YTVGDFMTTKEEL----HVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALDSIS------------  144 (182)
Q Consensus        83 ~~V~diM~~~~~~----~~v~~~~tl~ea~~~m~~~~~~~lPVv--D~~g~lvGiVt~~Dll~~~~~~------------  144 (182)
                      ..++|+|.++...    +.+.++.|+++|.++|.+++++++||+  +++++++|+||.+||+......            
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~   82 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSI   82 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchh
Confidence            4678999875322    456788899999999999999999999  4568999999999998543210            


Q ss_pred             --------------------------C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127          145 --------------------------G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR  178 (182)
Q Consensus       145 --------------------------~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~  178 (182)
                                                .                |...+...+||++ +|+++|+||+.|+++.+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          83 IYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             EECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             hhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                                      0                3345666777765 7899999999999998865

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.29  E-value=1.6e-12  Score=93.96  Aligned_cols=73  Identities=15%  Similarity=0.250  Sum_probs=64.5

Q ss_pred             CcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        68 ~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      .|.+....+.......+|+++|++  ++.++++++++.+|++.|.++++..+||+|++|+++|+||.+|++.+..
T Consensus        50 ~G~v~~~~l~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          50 VGVISLRDLIVNDDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             EEEEEHHHHTTSCTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             EEEEEeeccccccccEEhhhhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            355566666666677899999999  9999999999999999999999999999999999999999999997653

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=2.3e-11  Score=89.52  Aligned_cols=82  Identities=22%  Similarity=0.314  Sum_probs=67.0

Q ss_pred             hhhhhhhcccCcccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEe
Q 030127           54 DRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS  133 (182)
Q Consensus        54 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt  133 (182)
                      ++++..++..+     .+...++.......++.++|++  ++.++.+++++.+|++.|.++++..+||+|++|+++|+||
T Consensus        41 ~Vvd~~~~l~G-----~v~~~dl~~~~~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt  113 (144)
T d2yvxa2          41 YVVDEKGRLKG-----VLSLRDLIVADPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVT  113 (144)
T ss_dssp             EEBCTTCBBCC-----BCBHHHHTTSCTTCBSTTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEE
T ss_pred             EEecCCCCEec-----ccchhhhhhcccccchHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEE
Confidence            34444444444     4444555555567799999999  9999999999999999999999999999999999999999


Q ss_pred             HHHHHhccc
Q 030127          134 DYDLLALDS  142 (182)
Q Consensus       134 ~~Dll~~~~  142 (182)
                      .+|++++..
T Consensus       114 ~~Dil~~l~  122 (144)
T d2yvxa2         114 VDDVLDVLE  122 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.10  E-value=8.3e-11  Score=84.00  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=60.4

Q ss_pred             cchhhhhhhcccCcccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEE
Q 030127           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (182)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGi  131 (182)
                      ..++++..+...|     .+...++........+.++|.+  +++++++++++.++++.|.++++..+||+|++|+++|+
T Consensus        34 ~~~Vvd~~~~~~G-----~it~~dl~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGi  106 (122)
T d2yzqa2          34 SFPVVNKEGKLVG-----IISVKRILVNPDEEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGI  106 (122)
T ss_dssp             EEEEECTTCCEEE-----EEESSCC----------CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEE
T ss_pred             EEEEEeccccchh-----hhhcchhhhhhcccchhhcccc--ceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEE
Confidence            4455554444433     3444444444566689999999  99999999999999999999999999999999999999


Q ss_pred             EeHHHHHhccc
Q 030127          132 VSDYDLLALDS  142 (182)
Q Consensus       132 Vt~~Dll~~~~  142 (182)
                      ||.+|+++...
T Consensus       107 it~~dil~~~~  117 (122)
T d2yzqa2         107 LTVGDIIRRYF  117 (122)
T ss_dssp             EEHHHHHHHTT
T ss_pred             EEHHHHHHHHH
Confidence            99999987543

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.07  E-value=1.3e-10  Score=83.76  Aligned_cols=60  Identities=28%  Similarity=0.391  Sum_probs=56.3

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ...+++++|++  ++.++++++++.+|++.|.+++++.+||+|++|+++|+||.+|++++..
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             ccCCHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            45689999999  9999999999999999999999999999999999999999999998754

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.05  E-value=2e-10  Score=81.71  Aligned_cols=85  Identities=18%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             ccchhhhhhhcccCcccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEE
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvG  130 (182)
                      +++++++..+...     |.+...++.......++.++|..  ++.++++++++.++++.|.+++...+||+|++|+++|
T Consensus        33 ~~v~Vvd~~~~~~-----Gii~~~dl~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~G  105 (121)
T d1vr9a3          33 NECIVKDREGHFR-----GVVNKEDLLDLDLDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKG  105 (121)
T ss_dssp             SEEEEECTTSBEE-----EEEEGGGGTTSCTTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEE
T ss_pred             EEEEEEeCCceeE-----EEeehhhhhhhhccccccccccC--ccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEE
Confidence            3455555444433     44445555445556799999999  8999999999999999999999999999999999999


Q ss_pred             EEeHHHHHhccc
Q 030127          131 LVSDYDLLALDS  142 (182)
Q Consensus       131 iVt~~Dll~~~~  142 (182)
                      +||.+|++++..
T Consensus       106 vit~~dil~~l~  117 (121)
T d1vr9a3         106 AVSLHDFLEALI  117 (121)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             EEEHHHHHHHHH
Confidence            999999998654

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.05  E-value=7.7e-11  Score=86.32  Aligned_cols=90  Identities=17%  Similarity=0.144  Sum_probs=67.6

Q ss_pred             ccchhhhhhhcccCcccCcceecccc--CCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcE
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANSA--APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~l  128 (182)
                      .++++++..++.-|.+..+.+..+..  .......+++++|++  ++.++++++++.+|++.|.++++.++||+|++|++
T Consensus        35 ~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l  112 (142)
T d1pvma4          35 YGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRV  112 (142)
T ss_dssp             CEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCE
T ss_pred             ceEeeeccCCcccceEEeechhhhhhhhccccccccccccccc--ccccccchhhHHHHHHHHHHcCCcEEEEEecCCEE
Confidence            34455554444444443333322211  223355689999998  99999999999999999999999999999999999


Q ss_pred             EEEEeHHHHHhccc
Q 030127          129 VGLVSDYDLLALDS  142 (182)
Q Consensus       129 vGiVt~~Dll~~~~  142 (182)
                      +|+||..|++++..
T Consensus       113 ~Giit~~Dil~~l~  126 (142)
T d1pvma4         113 VGIVTLTDLSRYLS  126 (142)
T ss_dssp             EEEEEHHHHTTTSC
T ss_pred             EEEEEHHHHHHHHh
Confidence            99999999998653

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=1.5e-10  Score=85.22  Aligned_cols=61  Identities=31%  Similarity=0.461  Sum_probs=55.9

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      .....+++++|++  ++.++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++++
T Consensus        95 ~~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          95 QLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             --CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             cccCCEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence            3456789999999  999999999999999999999999999999999999999999999864

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.02  E-value=7.9e-11  Score=84.50  Aligned_cols=88  Identities=20%  Similarity=0.274  Sum_probs=67.0

Q ss_pred             ccchhhhhhhcccCcccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEE
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvG  130 (182)
                      .++++++. ++..|.+..+.+...-........+++++|.+  ++.++.+++++.+|++.|.+++++++||+|++|+++|
T Consensus        36 ~~~pV~d~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvG  112 (127)
T d2ef7a1          36 GSVIVVDG-NKPVGIITERDIVKAIGKGKSLETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKG  112 (127)
T ss_dssp             SEEEEEET-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEE
T ss_pred             ceEEeecc-cchhhhcchhHHHHHHHhhccccchhhhhhhh--hccccccccchhHHHHHHHHcCceEEEEEeCCCeEEE
Confidence            34455543 33334443333332222334456789999999  9999999999999999999999999999999999999


Q ss_pred             EEeHHHHHhcc
Q 030127          131 LVSDYDLLALD  141 (182)
Q Consensus       131 iVt~~Dll~~~  141 (182)
                      +||..|++++.
T Consensus       113 iit~~Dll~~i  123 (127)
T d2ef7a1         113 IISIRDITRAI  123 (127)
T ss_dssp             EEEHHHHHHHH
T ss_pred             EEEHHHHHHHH
Confidence            99999999865

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=1.1e-10  Score=83.38  Aligned_cols=88  Identities=17%  Similarity=0.311  Sum_probs=67.9

Q ss_pred             ccchhhhhhhcccCcccCcceecccc--CCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcE
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANSA--APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~l  128 (182)
                      ++.++++..+...|.+..+.+....+  ........++++|++  ++.++++++++.+|++.|.+++++++||+| +|++
T Consensus        33 ~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~l  109 (123)
T d1y5ha3          33 GALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRL  109 (123)
T ss_dssp             SEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEE
T ss_pred             CceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeec--cceeeeecchHHHHHHHHHHcCceEEEEEE-CCEE
Confidence            45566666666555554444433222  223345678999999  999999999999999999999999999999 5899


Q ss_pred             EEEEeHHHHHhcc
Q 030127          129 VGLVSDYDLLALD  141 (182)
Q Consensus       129 vGiVt~~Dll~~~  141 (182)
                      +|+||..|+++..
T Consensus       110 vGiit~~Dil~~l  122 (123)
T d1y5ha3         110 VGIVTEADIARHL  122 (123)
T ss_dssp             EEEEEHHHHHHTC
T ss_pred             EEEEEHHHHHhhC
Confidence            9999999998754

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=4.6e-10  Score=80.98  Aligned_cols=90  Identities=20%  Similarity=0.200  Sum_probs=69.5

Q ss_pred             cccchhhhhhhcccCcccCcceecccc-CCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcE
Q 030127           50 ATSSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (182)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~l  128 (182)
                      .++.++++..++..|.+....+..+.. .......+++++|.+  ++.++.+++++.++++.|.+++++++||++ +|++
T Consensus        36 ~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~  112 (132)
T d2yzia1          36 VGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTR--NLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKI  112 (132)
T ss_dssp             CSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEE
T ss_pred             CcEEEEecccceeeeeeeHHHHHHHHhhccCccceeEeecccc--cccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEE
Confidence            456667766666555554444433222 223356789999999  999999999999999999999999999876 7999


Q ss_pred             EEEEeHHHHHhccc
Q 030127          129 VGLVSDYDLLALDS  142 (182)
Q Consensus       129 vGiVt~~Dll~~~~  142 (182)
                      +|+||.+|++++..
T Consensus       113 vGivt~~Dil~a~~  126 (132)
T d2yzia1         113 VGIFTLSDLLEASR  126 (132)
T ss_dssp             EEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHH
Confidence            99999999998653

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.92  E-value=5.5e-10  Score=80.75  Aligned_cols=59  Identities=25%  Similarity=0.357  Sum_probs=55.3

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ...+++++|++  +++++.+++++.++++.|.++++.++||+|++|+++|+||.+|+++..
T Consensus        71 ~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l  129 (141)
T d3ddja1          71 YGKVVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIAL  129 (141)
T ss_dssp             HTCBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             cCCCHHHHhCc--ccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHH
Confidence            45689999999  999999999999999999999999999999999999999999998764

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.88  E-value=1.5e-09  Score=77.69  Aligned_cols=59  Identities=29%  Similarity=0.424  Sum_probs=54.6

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ....+++++|++  ++.++.+++++.+|++.|.+++++++||+| +|+++|+||.+|+++..
T Consensus        67 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          67 VKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ccceeEeeeccc--eeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            345789999999  999999999999999999999999999999 69999999999999764

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.88  E-value=1.8e-09  Score=77.22  Aligned_cols=56  Identities=25%  Similarity=0.360  Sum_probs=49.9

Q ss_pred             cccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        85 V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      ...+|..  +++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|++++..
T Consensus        62 ~~~~~~~--~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          62 SEHMTSE--HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             TTSCCCS--CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             eeeeecc--ceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            3445555  7889999999999999999999999999999999999999999998754

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.88  E-value=4.9e-10  Score=79.77  Aligned_cols=88  Identities=20%  Similarity=0.246  Sum_probs=47.8

Q ss_pred             ccchhhhh---hhcccCcccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCc
Q 030127           51 TSSDRVSA---LRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK  127 (182)
Q Consensus        51 r~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~  127 (182)
                      .++|+++.   .++..|.+....+...  .......++.++|..+.++.++.+++++.+|+++|.+++++++||+|++|+
T Consensus        28 ~~~pVvd~~~~~~~lvGivT~~Di~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~  105 (120)
T d1jr1a4          28 CGIPITDTGRMGSRLVGIISSRDIDFL--KEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDE  105 (120)
T ss_dssp             ----------CTTCCC------------------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTE
T ss_pred             CeEEEeeccccCCeEeeeeeeeeeeeh--hccccCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCE
Confidence            35666653   3344455544443221  222334567777766547899999999999999999999999999999999


Q ss_pred             EEEEEeHHHHHhc
Q 030127          128 LVGLVSDYDLLAL  140 (182)
Q Consensus       128 lvGiVt~~Dll~~  140 (182)
                      ++|+||.+|+++.
T Consensus       106 lvGiiT~~Di~k~  118 (120)
T d1jr1a4         106 LVAIIARTDLKKN  118 (120)
T ss_dssp             EEEEECHHHHHHH
T ss_pred             EEEEEEHHHhhhc
Confidence            9999999999875

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.87  E-value=2e-09  Score=76.22  Aligned_cols=60  Identities=25%  Similarity=0.372  Sum_probs=54.7

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      .....++.++|++  ++.++++++++.+|++.|.++++..+||+| +|+++|++|..|++++.
T Consensus        60 ~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          60 DLAEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             CTTTSBHHHHCBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             cccceeEeeeccc--ccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence            3456789999999  999999999999999999999999999987 68999999999998763

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.84  E-value=2e-09  Score=78.06  Aligned_cols=59  Identities=22%  Similarity=0.372  Sum_probs=54.0

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ....+++++|++  ++.++++++++.+|++.|.+++++.+||+| +|+++|+||.+|++++.
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~  130 (139)
T d2o16a3          72 AFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIA  130 (139)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHH
T ss_pred             ccccchhHhhcc--ccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            345689999999  999999999999999999999999999999 58999999999998764

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.82  E-value=2.5e-09  Score=78.24  Aligned_cols=58  Identities=16%  Similarity=0.003  Sum_probs=52.9

Q ss_pred             cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ....+.++|.+  .+.++.+++++.+++++|.+++++++||+| +|+++|+||.+||++++
T Consensus       101 ~~~~~~~~~~~--~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3         101 VVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             BCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ccceeeecccC--CCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHh
Confidence            34467889999  899999999999999999999999999998 69999999999999865

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=6.8e-09  Score=75.35  Aligned_cols=91  Identities=15%  Similarity=0.123  Sum_probs=64.7

Q ss_pred             ccchhhhhhhcccCcccCcceeccccCC--Cccc------cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEe
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANSAAP--SSGV------YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI  122 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~------~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVv  122 (182)
                      .+.++++..+...|.+....+...-...  ....      ..+...|..  ++.++.+++++.++++.|.++++..+||+
T Consensus        44 ~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv  121 (145)
T d2v8qe1          44 SALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVV  121 (145)
T ss_dssp             SEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--SCCEECTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             CcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhhhccC--CCeEECCCCcHHHHHHHHHHcCceEEEEE
Confidence            3455555555544554444443222211  1111      344455667  88999999999999999999999999999


Q ss_pred             eCCCcEEEEEeHHHHHhcccc
Q 030127          123 DDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus       123 D~~g~lvGiVt~~Dll~~~~~  143 (182)
                      |++|+++|+||.+||+++...
T Consensus       122 d~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1         122 DEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             CTTSBEEEEEEHHHHHHHHHS
T ss_pred             ccCCEEEEEEEHHHHHHHHHh
Confidence            999999999999999987643

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.77  E-value=1.1e-09  Score=78.78  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=51.9

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ....+|+++|++  ++.++.+++++.++++.|.+++  .+||+|++|+++|+||.+|+++..
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l  128 (132)
T d1yava3          71 LDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKEL  128 (132)
T ss_dssp             TTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             cccccccccccc--cccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHH
Confidence            345689999999  9999999999999999998764  599999999999999999999764

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.75  E-value=1.1e-08  Score=72.89  Aligned_cols=56  Identities=23%  Similarity=0.153  Sum_probs=49.6

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      .....|..  ++.++.+++++.+|++.|.+++++.+||+|++|+++|+||..||++..
T Consensus        67 ~~~~~~~~--~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          67 GPAMPIAN--SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             SBSGGGCB--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             cccccccc--cceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            44455556  688999999999999999999999999999999999999999998753

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.1e-08  Score=76.12  Aligned_cols=61  Identities=13%  Similarity=0.233  Sum_probs=55.1

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~  142 (182)
                      .....+++++|.+  ++.++.+++++.+++++|.+++...+||+| +|+++|+||.+|++++..
T Consensus        96 ~~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~  156 (169)
T d2j9la1          96 TPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIA  156 (169)
T ss_dssp             CCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            3446789999999  899999999999999999999999999987 789999999999998654

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=7e-09  Score=75.07  Aligned_cols=61  Identities=21%  Similarity=0.328  Sum_probs=53.4

Q ss_pred             ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (182)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~  143 (182)
                      ....+++++|..   ++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|++++...
T Consensus        81 ~~~~~~~~~~~~---~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          81 LIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             CSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             ccccCHHHHcCC---CEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            344567788754   7889999999999999999999999999999999999999999987643

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.67  E-value=1.8e-08  Score=73.93  Aligned_cols=92  Identities=20%  Similarity=0.257  Sum_probs=65.3

Q ss_pred             ccchhhhhhhcccCcccCcceecccc--CCCccccccccccccC----CCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC
Q 030127           51 TSSDRVSALRRSSAVFASGTLTANSA--APSSGVYTVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDD  124 (182)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~V~diM~~~----~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~  124 (182)
                      .+.++++..++..|.+..+.+.....  .......++.++|...    .++.++.+++++.++++.|.++++..+||+|+
T Consensus        36 ~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  115 (153)
T d2ooxe2          36 SAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE  115 (153)
T ss_dssp             SEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT
T ss_pred             ceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC
Confidence            45566665555545544444332211  1122344666666431    15678999999999999999999999999999


Q ss_pred             CCcEEEEEeHHHHHhccc
Q 030127          125 DWKLVGLVSDYDLLALDS  142 (182)
Q Consensus       125 ~g~lvGiVt~~Dll~~~~  142 (182)
                      +|+++|+||.+|++++..
T Consensus       116 ~~~lvGivT~~Dil~~~~  133 (153)
T d2ooxe2         116 NLKLEGILSLADILNYII  133 (153)
T ss_dssp             TCBEEEEEEHHHHHHHHH
T ss_pred             CCEEEEEEEHHHHHHHHH
Confidence            999999999999998754

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=2.1e-08  Score=72.39  Aligned_cols=53  Identities=19%  Similarity=0.236  Sum_probs=44.6

Q ss_pred             cccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (182)
Q Consensus        87 diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~  141 (182)
                      ..|..  ++.++.+++++.++++.|.++++..+||+|++|+++|+||.+|++++.
T Consensus        85 ~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          85 SDDFE--GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             C--------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             hhccc--ccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            34445  678999999999999999999999999999999999999999999864

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=2.4e-08  Score=73.23  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=50.7

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC-CCcEEEEEeHHHHHhcc
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALD  141 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~-~g~lvGiVt~~Dll~~~  141 (182)
                      .+.++|.+  +++++++++++.+|++.|.+++++++||+|+ +|+++|+||.+||++++
T Consensus        97 ~~~~~~~~--~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          97 VYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             HHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             eeeeeecc--ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            45678888  8999999999999999999999999999984 58999999999999865

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.41  E-value=1.4e-07  Score=70.21  Aligned_cols=57  Identities=23%  Similarity=0.307  Sum_probs=50.6

Q ss_pred             ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCC-----cEEEEEeHHHHHhccc
Q 030127           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-----KLVGLVSDYDLLALDS  142 (182)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g-----~lvGiVt~~Dll~~~~  142 (182)
                      .+.++|.+  +++++.+++++.+|++.|.+++++++||+|++|     +++|+||.+||++...
T Consensus       108 ~~~~~~~~--~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1         108 RKIGAIPP--ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             HHTTCSCS--SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             eeeeeccc--CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence            35557888  899999999999999999999999999998764     6999999999998764

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=85.72  E-value=0.0014  Score=49.19  Aligned_cols=60  Identities=13%  Similarity=0.104  Sum_probs=52.3

Q ss_pred             CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhc
Q 030127           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (182)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~  140 (182)
                      ......+.++|..  .+.++..+++-+++..+|........||++++++++|.|+.+|+..+
T Consensus       133 ~~~~~~l~~i~~~--~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A  192 (213)
T d1lkvx_         133 RSIQLVLREVDTR--DLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEA  192 (213)
T ss_dssp             HHHHHHHTTSCHH--HHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred             ccHhHHHHHhhhh--hheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHH
Confidence            3345577888988  88889999999999999999999999999999999999999998653