Citrus Sinensis ID: 030132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHVLGSCWQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHccccccccccccccccccccccccccccEEEEEEccccccccccHHHccEEEEEEccHHHHHHHccccccccccccccEEEEEEccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHcccccccccccEEEEcEEccEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEccccccccHHHEEEEEEEEEHHHHHHHHHHcccHHHcccccEEEEEEcccccccccccccccEEEEEEcccccHcHHHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEEcccc
Coil and Loop (DISEMBL)
magesdnprtedqtntknpnpseeeeleegeivgddessknstavmqqphplehswtfwfdnpfakskqatwgssmrsIYTFSSVEEFWSLYnnihhpsklavgadfycfknkiepkwedpvcanggkwtvifpkgksdtswLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHVLGSCWQ
Flexible Loop (DISEMBL)
magesdnprtedqtntknpnpseeeelEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHVLGSCWQ
Low Complexity Region (SEG)
MAGESDNPRTEDQTNTKNPNPSeeeeleegeIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHVLGSCWQ
Disordered region (IsUnstruct)
****************************************************EHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHVLGSCW*
Disordered Region (DISOPRED)
***************************************************LEHSWTFWFD**************MRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHVLGSCWQ
Disordered Region (DISEMBL)
************************************************PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHVLGSCWQ
Disordered Region (DISPRO)
*******************************************AVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHVLGSCW*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHVLGSCWQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
P48599	227	Eukaryotic translation in	yes	no	0.681	0.546	0.709	1e-45
O81481	218	Eukaryotic translation in	N/A	no	0.763	0.637	0.630	1e-44
O23252	235	Eukaryotic translation in	yes	no	0.598	0.463	0.732	2e-44
Q9C7P6	240	Eukaryotic translation in	no	no	0.774	0.587	0.522	3e-41
Q9C7P2	240	Eukaryotic translation in	no	no	0.774	0.587	0.516	4e-41
P29557	215	Eukaryotic translation in	N/A	no	0.631	0.534	0.643	6e-41
Q03389	209	Eukaryotic translation in	N/A	no	0.532	0.464	0.551	2e-25
O81482	216	Eukaryotic translation in	N/A	no	0.538	0.453	0.535	6e-25
O04663	198	Eukaryotic translation in	no	no	0.565	0.520	0.481	3e-24
P48600	206	Eukaryotic translation in	no	no	0.456	0.402	0.578	3e-24

>sp|P48599|IF4E1_ORYSJ Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1

 Score =  182 bits (461), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 100/124 (80%)

Query: 23  EEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTF 82
           + +E EEGEI  DD       A    PHPLEH+WTFWFDNP  KSKQATWGSS+R I+TF
Sbjct: 25  DADEREEGEIADDDSGHAPPQANPAAPHPLEHAWTFWFDNPQGKSKQATWGSSIRPIHTF 84

Query: 83  SSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSW 142
           S+VE+FWSLYNNIHHPSKL VGADF+CFKNKIEPKWEDP+CANGGKWT    +GKSDT W
Sbjct: 85  STVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKSDTMW 144

Query: 143 LYTV 146
           L+T+
Sbjct: 145 LHTL 148

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|O81481|IF4E1_MAIZE Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1

 Score =  179 bits (454), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/146 (63%), Positives = 110/146 (75%), Gaps = 7/146 (4%)

Query: 1   MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           MA E+D  R     +   P P E+++ EEGEI  D   + +  A     HPLEHSWTFWF
Sbjct: 1   MAEETDT-RPASAGSRGRPAP-EDDDREEGEIT-DLACAPSPPAT----HPLEHSWTFWF 53

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           DNP +KSKQA WGSS+R I+TFS+VEEFW LYNNI+HPSKL VGADF+CFKNKIEPKWED
Sbjct: 54  DNPQSKSKQAAWGSSIRPIHTFSTVEEFWGLYNNINHPSKLIVGADFHCFKNKIEPKWED 113

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTV 146
           P+CANGGKWT+   +GKSDT WL+T+
Sbjct: 114 PICANGGKWTISCGRGKSDTFWLHTL 139

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|O23252|IF4E1_ARATH Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=1 SV=1

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 95/112 (84%), Gaps = 3/112 (2%)

Query: 36  DESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNI 95
           DESSK+    + + HPLEHSWTFWFDNP  KSKQ +WGSS+R ++TFS+VEEFWSLYNN+
Sbjct: 49  DESSKSG---VPESHPLEHSWTFWFDNPAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNM 105

Query: 96  HHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVC 147
            HPSKLA GADFYCFK+ IEPKWEDP+CANGGKWT+ FPK KSD SWLYT+ 
Sbjct: 106 KHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLL 157

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7P6|IF4E3_ARATH Eukaryotic translation initiation factor 4E-3 OS=Arabidopsis thaliana GN=EIF4E3 PE=1 SV=1

 Score =  167 bits (423), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 108/155 (69%), Gaps = 14/155 (9%)

Query: 1   MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDES---------SKNSTAVMQQPHP 51
           MA ++ +P T     T +P+P E+       I GD+++         SK ST V+Q+ H 
Sbjct: 12  MADQNIDPNT-----TTSPSPKEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHC 66

Query: 52  LEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFK 111
            ++SWTFWFDNP +KS Q  WGSS+RS+YTF ++EEFWSLYNNIH P+K   GAD YCFK
Sbjct: 67  FQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFK 126

Query: 112 NKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTV 146
           +KIEPKWEDP+CANGGKW+++FPK   + +WL T+
Sbjct: 127 DKIEPKWEDPICANGGKWSMMFPKATLECNWLNTL 161

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7P2|IF4E2_ARATH Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2

 Score =  167 bits (423), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 109/155 (70%), Gaps = 14/155 (9%)

Query: 1   MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDES---------SKNSTAVMQQPHP 51
           MA ++ +P T     T +P+P E+       I GD+++         SK ST V+Q+ H 
Sbjct: 12  MADQNIDPNT-----TTSPSPIEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHC 66

Query: 52  LEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFK 111
            ++SWTFWFDNP +KS Q  WGSS+RS+YTF+++EEFWSLYNNIH P+K   G+D YCFK
Sbjct: 67  FQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFATIEEFWSLYNNIHPPTKWVSGSDLYCFK 126

Query: 112 NKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTV 146
           +KIEPKWEDP+CANGGKWT+ FP+   +++WL T+
Sbjct: 127 DKIEPKWEDPICANGGKWTMFFPRATLESNWLNTL 161

Arabidopsis thaliana (taxid: 3702)

>sp|P29557|IF4E1_WHEAT Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3

 Score =  166 bits (421), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 74/115 (64%), Positives = 91/115 (79%)

Query: 32  IVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSL 91
           I  D + S  + A     HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW L
Sbjct: 22  IADDGDGSSAAAAGRITAHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGL 81

Query: 92  YNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTV 146
           YNNIH+PSKL VGADF+CFKNKIEPKWEDP+CANGGKWT+   +GKSDT WL+T+
Sbjct: 82  YNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTL 136

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|Q03389|IF4E2_WHEAT Eukaryotic translation initiation factor isoform 4E-2 OS=Triticum aestivum PE=1 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 65/98 (66%), Gaps = 1/98 (1%)

Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PH L+  WTFW+D        A WG+S++  YTF +VEEFW LY+ I  PSKL   ADF+
Sbjct: 32  PHKLQRQWTFWYDIQTKPKPGAAWGTSLKKGYTFDTVEEFWCLYDQIFRPSKLVGSADFH 91

Query: 109 CFKNKIEPKWEDPVCANGGKWTVIFPKGKS-DTSWLYT 145
            FK  +EPKWEDP CANGGKWTVI  +  + DT WL T
Sbjct: 92  LFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLET 129

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|O81482|IF4E2_MAIZE Eukaryotic translation initiation factor isoform 4E-2 OS=Zea mays PE=2 SV=1

 Score =  113 bits (283), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 65/99 (65%), Gaps = 1/99 (1%)

Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PH L   WTFW+D        A WG+S++  YTF +VEEFWS+Y+ I  PSKL+  ADF+
Sbjct: 39  PHKLHRQWTFWYDIQTKTKSGAAWGTSLKKAYTFDTVEEFWSMYDQIFRPSKLSGNADFH 98

Query: 109 CFKNKIEPKWEDPVCANGGKWTV-IFPKGKSDTSWLYTV 146
            FK  +EPKWEDP CANGGKWTV    K   +T WL T+
Sbjct: 99  LFKAGVEPKWEDPECANGGKWTVPCNRKATFETMWLETL 137

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|O04663|IF4E4_ARATH Eukaryotic translation initiation factor isoform 4E OS=Arabidopsis thaliana GN=EIF(ISO)4E PE=1 SV=2

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 66/108 (61%), Gaps = 5/108 (4%)

Query: 42  STAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKL 101
           +T   +QPH LE  W+FWFDN     K A WG+S+R  YTF +VE+FW L+  I   SKL
Sbjct: 18  ATEAEKQPHKLERKWSFWFDNQ--SKKGAAWGASLRKAYTFDTVEDFWGLHETIFQTSKL 75

Query: 102 AVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTV 146
              A+ + FK  +EPKWEDP CANGGKWT +    +    D  WL T+
Sbjct: 76  TANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETL 123

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. Mediates susceptibility to Turnipmosaic potyvirus (TuMV) and Tobacco etch potyvirus (TEV).

Arabidopsis thaliana (taxid: 3702)

>sp|P48600|IF4E2_ORYSJ Eukaryotic translation initiation factor isoform 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 56/83 (67%)

Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PH L   W FW+D        A WG+S+R  YTF +VEEFW LY+ I  PSK+ V ADF+
Sbjct: 29  PHKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFH 88

Query: 109 CFKNKIEPKWEDPVCANGGKWTV 131
            FK  +EPKWEDP CANGGKWTV
Sbjct: 89  LFKAGVEPKWEDPECANGGKWTV 111

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
405110161	231	eukaryotic translation initiation factor	0.747	0.588	0.722	3e-54
147826574	268	hypothetical protein VITISV_007434 [Viti	0.752	0.511	0.748	1e-53
302171730	228	eukaryotic translation initiation factor	0.774	0.618	0.714	1e-53
225462474	236	PREDICTED: eukaryotic translation initia	0.752	0.580	0.748	1e-53
48431257	228	eukaryotic translation initiation factor	0.752	0.600	0.735	2e-53
109629723	228	eukaryotic translation initiation factor	0.774	0.618	0.714	2e-53
224114393	223	predicted protein [Populus trichocarpa]	0.719	0.587	0.746	4e-53
109629725	228	eukaryotic translation initiation factor	0.774	0.618	0.707	5e-53
388519563	193	unknown [Lotus japonicus]	0.791	0.746	0.688	5e-53
109629727	228	eukaryotic translation initiation factor	0.763	0.609	0.717	6e-53

>gi|405110161|emb|CCM43797.1| eukaryotic translation initiation factor 4E [Arachis hypogaea]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 122/144 (84%), Gaps = 8/144 (5%)

Query: 10  TEDQTNTKNPNPSEEEELEEGEIVGDDESSKNST------AVMQQPHPLEHSWTFWFDNP 63
           T+DQ  T NPN +E E+LEEGEI+ DD+SS  S       A+ + PHPLE+SWTFWFDNP
Sbjct: 12  TDDQI-TANPN-NENEDLEEGEILDDDDSSATSRPPSSSGALARNPHPLENSWTFWFDNP 69

Query: 64  FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
            AKSKQA WGSS+R IYTF++VEEFWS+YNNIHHPSKLAVGADF+CFK+KIEPKWEDP+C
Sbjct: 70  SAKSKQAAWGSSIRPIYTFATVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPIC 129

Query: 124 ANGGKWTVIFPKGKSDTSWLYTVC 147
           ANGGKWT+ FP+GKSDTSWLYT+ 
Sbjct: 130 ANGGKWTMTFPRGKSDTSWLYTLL 153

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826574|emb|CAN72912.1| hypothetical protein VITISV_007434 [Vitis vinifera]

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/143 (74%), Positives = 116/143 (81%), Gaps = 6/143 (4%)

Query: 10  TEDQTNTKNPNPSEEEELEEGE----IVGDDESS--KNSTAVMQQPHPLEHSWTFWFDNP 63
           TEDQ +T NPNP    + EE      IV DD S+  K S A+  QPHPLEHSWTFWFDNP
Sbjct: 15  TEDQGSTHNPNPRPHGDDEEDLEEGEIVVDDXSASLKQSAAITHQPHPLEHSWTFWFDNP 74

Query: 64  FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
            AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHPSKLAVGADF+CFK+KIEPKWEDPVC
Sbjct: 75  SAKSKQAAWGSSMRPIYTFSNVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPVC 134

Query: 124 ANGGKWTVIFPKGKSDTSWLYTV 146
           ANGGKWTV F KGKSDT WLYT+
Sbjct: 135 ANGGKWTVTFAKGKSDTCWLYTL 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302171730|gb|ADK97766.1| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/147 (71%), Positives = 120/147 (81%), Gaps = 6/147 (4%)

Query: 6   DNPR---TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           D P+   T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE+SWTFWF
Sbjct: 5   DTPKSIITDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLENSWTFWF 63

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           D P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWED
Sbjct: 64  DTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWED 123

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTVC 147
           P+CANGGKWT  +PKGKSDTSWLYT+ 
Sbjct: 124 PICANGGKWTANYPKGKSDTSWLYTLL 150

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462474|ref|XP_002267488.1| PREDICTED: eukaryotic translation initiation factor 4E-1 [Vitis vinifera]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/143 (74%), Positives = 116/143 (81%), Gaps = 6/143 (4%)

Query: 10  TEDQTNTKNPNPSEEEELEEGE----IVGDDESS--KNSTAVMQQPHPLEHSWTFWFDNP 63
           TEDQ +T NPNP    + EE      IV DD S+  K S A+  QPHPLEHSWTFWFDNP
Sbjct: 15  TEDQGSTHNPNPRPHGDDEEDLEEGEIVVDDASASLKQSAAITHQPHPLEHSWTFWFDNP 74

Query: 64  FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
            AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHPSKLAVGADF+CFK+KIEPKWEDPVC
Sbjct: 75  SAKSKQAAWGSSMRPIYTFSNVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPVC 134

Query: 124 ANGGKWTVIFPKGKSDTSWLYTV 146
           ANGGKWTV F KGKSDT WLYT+
Sbjct: 135 ANGGKWTVTFAKGKSDTCWLYTL 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48431257|gb|AAR04332.2| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 117/140 (83%), Gaps = 3/140 (2%)

Query: 10  TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKS 67
           T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE+SWTFWFD P AKS
Sbjct: 12  TDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLENSWTFWFDTPAAKS 70

Query: 68  KQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGG 127
           KQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWEDP+CANGG
Sbjct: 71  KQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGG 130

Query: 128 KWTVIFPKGKSDTSWLYTVC 147
           KWT  +PKGKSDTSWLYT+ 
Sbjct: 131 KWTANYPKGKSDTSWLYTLL 150

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109629723|gb|ABG35116.1| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/147 (71%), Positives = 119/147 (80%), Gaps = 6/147 (4%)

Query: 6   DNPR---TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           D P+   T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE SWTFWF
Sbjct: 5   DTPKSIITDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLESSWTFWF 63

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           D P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWED
Sbjct: 64  DTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWED 123

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTVC 147
           P+CANGGKWT  +PKGKSDTSWLYT+ 
Sbjct: 124 PICANGGKWTANYPKGKSDTSWLYTLL 150

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114393|ref|XP_002316746.1| predicted protein [Populus trichocarpa] gi|118489143|gb|ABK96378.1| unknown [Populus trichocarpa x Populus deltoides] gi|222859811|gb|EEE97358.1| predicted protein [Populus trichocarpa]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 100/134 (74%), Positives = 117/134 (87%), Gaps = 3/134 (2%)

Query: 17  KNPNPSEEEELEEGEIV--GDDESS-KNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWG 73
           K PNP+ E++LEEGEIV  GDD+SS K S ++  QPHPLEH WTFWFDNP AKSKQA+WG
Sbjct: 13  KTPNPNTEDDLEEGEIVAGGDDDSSLKKSVSLPYQPHPLEHQWTFWFDNPSAKSKQASWG 72

Query: 74  SSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIF 133
           SS+RSI+TFS++EEFWS+YNNIHHPSKLAVGADF+CFK+KIEPKWEDP+CANGGKW+V  
Sbjct: 73  SSLRSIFTFSTIEEFWSVYNNIHHPSKLAVGADFHCFKDKIEPKWEDPICANGGKWSVTL 132

Query: 134 PKGKSDTSWLYTVC 147
            KGKSDT WL T+ 
Sbjct: 133 SKGKSDTFWLNTLL 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109629725|gb|ABG35117.1| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 119/147 (80%), Gaps = 6/147 (4%)

Query: 6   DNPR---TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           D P+   T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE+ WTFWF
Sbjct: 5   DTPKSIITDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLENPWTFWF 63

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           D P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWED
Sbjct: 64  DTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWED 123

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTVC 147
           P+CANGGKWT  +PKGKSDTSWLYT+ 
Sbjct: 124 PICANGGKWTANYPKGKSDTSWLYTLL 150

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519563|gb|AFK47843.1| unknown [Lotus japonicus]

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/154 (68%), Positives = 125/154 (81%), Gaps = 10/154 (6%)

Query: 1   MAGESDNPR---TEDQTNTKNPNPSEEEELEEGEIVGDDESSK----NSTAVMQQPH-PL 52
           MA E D P+   T+DQ  T NP   +  +LEEGEI+ DD+SS     +S A++ QPH PL
Sbjct: 1   MAVE-DTPKSTITDDQITT-NPKAPDNADLEEGEIIDDDDSSATSKPSSAALVNQPHHPL 58

Query: 53  EHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKN 112
           E+SWTFWFDNP  KSKQA WGS++R IYTFS+VEEFWSLYNN+HHPSKLA+GADF+CFK 
Sbjct: 59  ENSWTFWFDNPSNKSKQAAWGSAIRPIYTFSTVEEFWSLYNNVHHPSKLAIGADFHCFKQ 118

Query: 113 KIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTV 146
           KIEPKWEDP+CANGGKWT+ FPKGKSDTSWLYT+
Sbjct: 119 KIEPKWEDPICANGGKWTMAFPKGKSDTSWLYTL 152

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109629727|gb|ABG35118.1| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  212 bits (539), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 104/145 (71%), Positives = 118/145 (81%), Gaps = 6/145 (4%)

Query: 6   DNPR---TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           D P+   T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE+SWTFWF
Sbjct: 5   DTPKSIITDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLENSWTFWF 63

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           D P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLA GADFYCFK+KIEPKWED
Sbjct: 64  DTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAAGADFYCFKHKIEPKWED 123

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYT 145
           P+CANGGKWT  +PKGKSDTSWLYT
Sbjct: 124 PICANGGKWTANYPKGKSDTSWLYT 148

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2117647	235	EIF4E "AT4G18040" [Arabidopsis	0.593	0.459	0.738	1.3e-45
TAIR|locus:2013748	240	AT1G29550 [Arabidopsis thalian	0.741	0.562	0.534	8.4e-42
UNIPROTKB|Q03389	209	Q03389 "Eukaryotic translation	0.543	0.473	0.554	1.7e-27
TAIR|locus:2165892	198	LSP1 "LOSS OF SUSCEPTIBILITY T	0.565	0.520	0.5	5.2e-26
ASPGD|ASPL0000035696	244	AN3411 [Emericella nidulans (t	0.774	0.577	0.346	8e-21
DICTYBASE|DDB_G0268574	250	eIF4e "eukaryotic translation	0.785	0.572	0.32	1.9e-19
ZFIN|ZDB-GENE-980526-127	214	eif4e1b "eukaryotic translatio	0.631	0.537	0.382	8.3e-19
UNIPROTKB|F1PSC3	217	EIF4E "Uncharacterized protein	0.571	0.479	0.418	1.7e-18
UNIPROTKB|D6RBW1	245	EIF4E "Eukaryotic translation	0.752	0.559	0.352	2.2e-18
UNIPROTKB|Q9N0T5	217	EIF4E "Eukaryotic translation	0.571	0.479	0.418	2.8e-18

TAIR|locus:2117647 EIF4E "AT4G18040" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 82/111 (73%), Positives = 95/111 (85%)

Query:    36 DESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNI 95
             DESSK+    + + HPLEHSWTFWFDNP  KSKQ +WGSS+R ++TFS+VEEFWSLYNN+
Sbjct:    49 DESSKSG---VPESHPLEHSWTFWFDNPAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNM 105

Query:    96 HHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTV 146
              HPSKLA GADFYCFK+ IEPKWEDP+CANGGKWT+ FPK KSD SWLYT+
Sbjct:   106 KHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTL 156

GO:0000339 "RNA cap binding" evidence=TAS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISS;IDA;TAS

GO:0006413 "translational initiation" evidence=IEA;ISS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009615 "response to virus" evidence=IMP

TAIR|locus:2013748 AT1G29550 [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 77/144 (53%), Positives = 100/144 (69%)

Query:    12 DQTNTKNPNPSXXXXXXXXXIVGDDES---------SKNSTAVMQQPHPLEHSWTFWFDN 62
             D   T +P+P          I GD+++         SK ST V+Q+ H  ++SWTFWFDN
Sbjct:    18 DPNTTTSPSPKEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHCFQNSWTFWFDN 77

Query:    63 PFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPV 122
             P +KS Q  WGSS+RS+YTF ++EEFWSLYNNIH P+K   GAD YCFK+KIEPKWEDP+
Sbjct:    78 PSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFKDKIEPKWEDPI 137

Query:   123 CANGGKWTVIFPKGKSDTSWLYTV 146
             CANGGKW+++FPK   + +WL T+
Sbjct:   138 CANGGKWSMMFPKATLECNWLNTL 161

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

UNIPROTKB|Q03389 Q03389 "Eukaryotic translation initiation factor isoform 4E-2" [Triticum aestivum (taxid:4565)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 56/101 (55%), Positives = 66/101 (65%)

Query:    49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
             PH L+  WTFW+D        A WG+S++  YTF +VEEFW LY+ I  PSKL   ADF+
Sbjct:    32 PHKLQRQWTFWYDIQTKPKPGAAWGTSLKKGYTFDTVEEFWCLYDQIFRPSKLVGSADFH 91

Query:   109 CFKNKIEPKWEDPVCANGGKWTVIFP-KGKSDTSWLYTVCL 148
              FK  +EPKWEDP CANGGKWTVI   K   DT WL T C+
Sbjct:    92 LFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLET-CM 131

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2165892 LSP1 "LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 54/108 (50%), Positives = 67/108 (62%)

Query:    42 STAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKL 101
             +T   +QPH LE  W+FWFDN     K A WG+S+R  YTF +VE+FW L+  I   SKL
Sbjct:    18 ATEAEKQPHKLERKWSFWFDNQ--SKKGAAWGASLRKAYTFDTVEDFWGLHETIFQTSKL 75

Query:   102 AVGADFYCFKNKIEPKWEDPVCANGGKWT-VIFPKGKS--DTSWLYTV 146
                A+ + FK  +EPKWEDP CANGGKWT V+    K   D  WL T+
Sbjct:    76 TANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETL 123

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS;TAS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS;IDA;TAS

GO:0006413 "translational initiation" evidence=IEA;ISS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0050687 "negative regulation of defense response to virus" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=TAS

GO:0009615 "response to virus" evidence=IMP

ASPGD|ASPL0000035696 AN3411 [Emericella nidulans (taxid:162425)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 51/147 (34%), Positives = 71/147 (48%)

Query:     1 MAGESDNPRTEDQTNTKNPNPSXXXXXXXXXIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
             MA  ++N      TN     P+           GD  +  +        HPL H WT WF
Sbjct:     1 MAAVAEN--APPVTNENTAPPAVAVEEKTEKANGDIVTVFHDPENFNVKHPLMHEWTLWF 58

Query:    61 DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
               P    K   W   ++ + TF+SVEEFW +YNNI   S+L + AD++ FK  + P+WED
Sbjct:    59 TKP-PSGKGDNWNDLLKEVVTFNSVEEFWGIYNNITPTSELGLKADYHLFKKGVRPEWED 117

Query:   121 PVCANGGKWTVIFPKGKS---DTSWLY 144
             P   +GGKW+  F   +S   D  WL+
Sbjct:   118 PQNKHGGKWSFSFKDKRSVPIDDLWLH 144

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

DICTYBASE|DDB_G0268574 eIF4e "eukaryotic translation initiation factor 4E" [Dictyostelium discoideum (taxid:44689)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 48/150 (32%), Positives = 73/150 (48%)

Query:     4 ESDNPRTEDQTNTKNP-NPSXXXXXXXXXIVGDDESSKNSTAVMQQP-----HPLEHSWT 57
             E+ N  +E  T T N  N               D+ +K      + P     HPL++ W+
Sbjct:    22 ENKNVTSETTTTTNNTQNKETETTDNINKEETADKENKEEQQQEENPENLIKHPLQNRWS 81

Query:    58 FWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPK 117
              W+D    K     W  S++ + +F SVE+FW ++NN+ + S L  G+ ++ FK+ IEPK
Sbjct:    82 LWYDYQSGKINPEHWVDSLKKVISFDSVEDFWCVFNNLPNVSNLKQGSSYHLFKDDIEPK 141

Query:   118 WEDPVCANGGKWTVIFP-KGKSDTSWLYTV 146
             WE      GGKW V+   K + D  WL +V
Sbjct:   142 WEHESNKRGGKWFVMVKDKSRCDNQWLQSV 171

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006417 "regulation of translation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-980526-127 eif4e1b "eukaryotic translation initiation factor 4e 1b" [Danio rerio (taxid:7955)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 49/128 (38%), Positives = 67/128 (52%)

Query:    37 ESSKNSTAVMQQP---HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYN 93
             E  K    ++++P   HPL++ W  WF   +   K   W  ++R I  F +VE+FW LYN
Sbjct:    18 EKKKFEPNILKEPCMKHPLQNRWGLWF---YKNDKSKMWQDNLRLITKFDTVEDFWGLYN 74

Query:    94 NIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTS----WLYTV-CL 148
             NI  PSKL+ G D+  FK+ IEP WED     GG+W +   K    T     WL T+ CL
Sbjct:    75 NIQLPSKLSSGCDYSMFKDGIEPMWEDRSNKCGGRWLITLAKQHRHTELDHFWLETLLCL 134

Query:   149 --DSMSGF 154
               +  S F
Sbjct:   135 IGEGFSSF 142

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IDA

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1PSC3 EIF4E "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 49/117 (41%), Positives = 64/117 (54%)

Query:    50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
             HPL++SW  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct:    37 HPLQNSWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93

Query:   110 FKNKIEPKWEDPVCANGGKWTVIFPKG--KSDTS--WLYTV-CL-----DSMSGFVC 156
             FK+ IEP WED     GG+W +   K   +SD    WL T+ CL     D  S  VC
Sbjct:    94 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 150

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

UNIPROTKB|D6RBW1 EIF4E "Eukaryotic translation initiation factor 4E" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 55/156 (35%), Positives = 74/156 (47%)

Query:    11 EDQTNTKNPNPSXXXXXXXXXIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQA 70
             E Q  T  PNP              ++   N    ++  HPL++ W  WF   F   K  
Sbjct:    32 ESQETTPTPNPPTTEEEKTES----NQEVANPEHYIK--HPLQNRWALWF---FKNDKSK 82

Query:    71 TWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT 130
             TW +++R I  F +VE+FW+LYN+I   S L  G D+  FK+ IEP WED     GG+W 
Sbjct:    83 TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWL 142

Query:   131 VIFPKG--KSDTS--WLYTV-CL-----DSMSGFVC 156
             +   K   +SD    WL T+ CL     D  S  VC
Sbjct:   143 ITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 178

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q9N0T5 EIF4E "Eukaryotic translation initiation factor 4E" [Bos taurus (taxid:9913)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 49/117 (41%), Positives = 63/117 (53%)

Query:    50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
             HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct:    37 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93

Query:   110 FKNKIEPKWEDPVCANGGKWTVIFPKG--KSDTS--WLYTV-CL-----DSMSGFVC 156
             FK+ IEP WED     GG+W +   K   +SD    WL TV CL     D  S  VC
Sbjct:    94 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETVLCLIGESFDDYSDDVC 150

GO:0005737 "cytoplasm" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0010494 "cytoplasmic stress granule" evidence=ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23252	IF4E1_ARATH	No assigned EC number	0.7321	0.5989	0.4638	yes	no
P48599	IF4E1_ORYSJ	No assigned EC number	0.7096	0.6813	0.5462	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
pfam01652	162	pfam01652, IF4E, Eukaryotic initiation factor 4E	9e-45
COG5053	217	COG5053, CDC33, Translation initiation factor 4E (	4e-22
PTZ00040	233	PTZ00040, PTZ00040, translation initiation factor	8e-11

>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E

 Score =  145 bits (367), Expect = 9e-45
 Identities = 43/99 (43%), Positives = 59/99 (59%), Gaps = 1/99 (1%)

Query: 51  PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCF 110
           PL++ WT W+D      K   +  +++ I TF +VE+FW LYNNI  PSKL +G+D++ F
Sbjct: 1   PLQNKWTLWYDRRPPGDKSKDYEDNLKPIGTFDTVEDFWRLYNNIPRPSKLPLGSDYHLF 60

Query: 111 KNKIEPKWEDPVCANGGKWTVIFPKG-KSDTSWLYTVCL 148
           K  I+P WEDP   NGGKWT+  PK    D  W   +  
Sbjct: 61  KKGIKPMWEDPANKNGGKWTIRLPKSQNLDRFWEELLLA 99

Length = 162

>gnl|CDD|227386 COG5053, CDC33, Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

 Score = 88.4 bits (219), Expect = 4e-22
 Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 15/157 (9%)

Query: 19  PNPSEEEELEEGEIVGDDESSKNSTAVMQQP-----HPLEHSWTFWFDNPFAKSKQATWG 73
            +  E  +  E  +  D  +    T +         HPL   WT WF  P  +    +W 
Sbjct: 1   MSTEEVSKKFEENVSVDPTTKTPRTVLSDSAHFMNKHPLAFHWTLWFLKP-PEDGLESWS 59

Query: 74  SSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIF 133
             ++SI TF +VEEFW + +NI   S+L   +D+  F+  I P+WED    NGGKW+   
Sbjct: 60  DLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMNGGKWSFQL 119

Query: 134 PKGKSDT---SWLYTVC------LDSMSGFVCLCWFI 161
                D     WL T+       LD     +      
Sbjct: 120 KGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGN 156

Length = 217

>gnl|CDD|240238 PTZ00040, PTZ00040, translation initiation factor E4; Provisional

 Score = 58.3 bits (141), Expect = 8e-11
 Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 25/129 (19%)

Query: 37  ESSKNSTAVMQQPHPLEHSWTFW---FDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYN 93
           E  + +   +  P PL + W  W         KS    +    + + +F SV++FW L+ 
Sbjct: 25  ELFEETKIPLSTPLPLSYKWVIWEQVVKETIRKSND--YKDYTKPLASFDSVQKFWQLWF 82

Query: 94  NIHHPSKLAVGADF---------------YCFKNKIEPKWEDPVCANGGK-----WTVIF 133
           NI  PS+L  G                    FK+ I+P WEDP+ A GG      W    
Sbjct: 83  NIPQPSELLTGKRMIRESSDGSEHVVDAVMIFKDGIQPMWEDPMNATGGHFEYRFWPTDV 142

Query: 134 PKGKSDTSW 142
             G+ D  W
Sbjct: 143 SPGQIDEYW 151

Length = 233

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG1670	212	consensus Translation initiation factor 4F, cap-bi	100.0
PTZ00040	233	translation initiation factor E4; Provisional	100.0
PF01652	165	IF4E: Eukaryotic initiation factor 4E; InterPro: I	100.0
KOG1669	208	consensus Predicted mRNA cap-binding protein relat	100.0
COG5053	217	CDC33 Translation initiation factor 4E (eIF-4E) [T	100.0

>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.3e-47  Score=313.91  Aligned_cols=128  Identities=37%  Similarity=0.684  Sum_probs=121.1

Q ss_pred             CCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCC
Q 030132           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (182)
Q Consensus        46 ~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~n  125 (182)
                      ....|||++.|||||..+.++   .+|++.|+.|.+|+|||+||++|++|++||+|+.+|||+|||+||+||||||+|++
T Consensus        31 ~~~~hpL~~~WTlW~l~~d~~---ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~~  107 (212)
T KOG1670|consen   31 NHIKHPLQNNWTLWFLKNDRN---KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANKN  107 (212)
T ss_pred             cccccccccceeEEeecCCcc---ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCccccC
Confidence            456899999999999998653   39999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcCCC---ChHHHHHHHHhhhccCCeeecceEeEEEEEeeeCCeeEEE
Q 030132          126 GGKWTVIFPKG---KSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHV  176 (182)
Q Consensus       126 GGkw~i~i~k~---~~d~iWe~llLa~ig~~~v~~~~i~Gi~l~~k~~~~~v~v  176 (182)
                      ||||+|.++++   .+|.+|+++|||+||++|-.+.+|||+|+++|...+.|+|
T Consensus       108 GGrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR~k~~KISv  161 (212)
T KOG1670|consen  108 GGRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIRGKGDKISV  161 (212)
T ss_pred             CCeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEeccCCceEEE
Confidence            99999999964   6799999999999999999989999999999999999987

>PTZ00040 translation initiation factor E4; Provisional

Probab=100.00  E-value=2.3e-44  Score=304.55  Aligned_cols=130  Identities=28%  Similarity=0.539  Sum_probs=116.5

Q ss_pred             CCCCCCccceEEEEeCCCCc-ccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCce---------------eeee
Q 030132           47 QQPHPLEHSWTFWFDNPFAK-SKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGAD---------------FYCF  110 (182)
Q Consensus        47 ~~~hpL~~~WtfW~~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~---------------~~lF  110 (182)
                      ...|||+++|||||+.+..+ .+..+|+++|++|++|+|||+||++|+||++||+|+.+++               ||||
T Consensus        35 ~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~lF  114 (233)
T PTZ00040         35 STPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMIF  114 (233)
T ss_pred             CCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeeee
Confidence            45799999999999987543 4467899999999999999999999999999999998874               9999


Q ss_pred             cCCCccCCCCCCCCCCcEEEEEcCC-----CChHHHHHHHHhhhccCCeeecceEeEEEE----EeeeCCeeEEE
Q 030132          111 KNKIEPKWEDPVCANGGKWTVIFPK-----GKSDTSWLYTVCLDSMSGFVCLCWFISLIL----NTKYGFKFVHV  176 (182)
Q Consensus       111 K~GIkP~WEDp~N~nGGkw~i~i~k-----~~~d~iWe~llLa~ig~~~v~~~~i~Gi~l----~~k~~~~~v~v  176 (182)
                      |+||+||||||+|++||+|++++++     +.+|++|++|||++||+.+..+..||||+|    ++|.+..+|+|
T Consensus       115 K~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsI  189 (233)
T PTZ00040        115 KDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEI  189 (233)
T ss_pred             cCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEE
Confidence            9999999999999999999999965     347999999999999999988899999996    55667777766

>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs

Probab=100.00  E-value=3.4e-43  Score=281.36  Aligned_cols=126  Identities=36%  Similarity=0.675  Sum_probs=116.9

Q ss_pred             CCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEE
Q 030132           51 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT  130 (182)
Q Consensus        51 pL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~nGGkw~  130 (182)
                      ||+++|||||+......+.++|+++|++|++|+|||+||++|++|++|++|+.+++|||||+||+||||||+|++||+|+
T Consensus         1 pL~~~Wt~w~~~~~~~~~~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~~   80 (165)
T PF01652_consen    1 PLQNKWTFWYDKKQKNSKSDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRWI   80 (165)
T ss_dssp             EEEEEEEEEEEECCCCCTTSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEEE
T ss_pred             CcCCEEEEEEEecCCCCchhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEEE
Confidence            79999999999665555578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCC---ChHHHHHHHHhhhccCCeeec-ceEeEEEEEeeeCCeeEEE
Q 030132          131 VIFPKG---KSDTSWLYTVCLDSMSGFVCL-CWFISLILNTKYGFKFVHV  176 (182)
Q Consensus       131 i~i~k~---~~d~iWe~llLa~ig~~~v~~-~~i~Gi~l~~k~~~~~v~v  176 (182)
                      |++++.   .++++|+++||++||+.+... ..||||++++|.+..+|+|
T Consensus        81 i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~i  130 (165)
T PF01652_consen   81 IRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISI  130 (165)
T ss_dssp             EEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEE
T ss_pred             EEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEE
Confidence            999998   899999999999999998754 8999999999999988876

eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....

>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.9e-41  Score=271.92  Aligned_cols=131  Identities=28%  Similarity=0.572  Sum_probs=126.0

Q ss_pred             CCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCC
Q 030132           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (182)
Q Consensus        46 ~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~n  125 (182)
                      +...|||++..+|||........+++|+++|++|++|.|||+||++|.||++|+.|+...++||||+||+|+|||++|.|
T Consensus        26 ~d~dh~l~y~~t~~y~~r~~Gv~~qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~aN~n  105 (208)
T KOG1669|consen   26 MDMDHPLQYVYTFWYERRTPGVSKQSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKANCN  105 (208)
T ss_pred             CCCCCcceEEEEEEEEecCCCCChhhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCcccccCcCCCC
Confidence            66789999999999998877667899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcCCCChHHHHHHHHhhhccCCeeecceEeEEEEEeeeCCeeEEE
Q 030132          126 GGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHV  176 (182)
Q Consensus       126 GGkw~i~i~k~~~d~iWe~llLa~ig~~~v~~~~i~Gi~l~~k~~~~~v~v  176 (182)
                      ||+|+|+++|+.+.++||+||||++|++|-.+++|||.|+++|.|++-|++
T Consensus       106 GgkWiirlkK~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~nediiSi  156 (208)
T KOG1669|consen  106 GGKWIIRLKKGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNEDIISI  156 (208)
T ss_pred             CCeEEEEehHHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccchhhhh
Confidence            999999999999999999999999999999999999999999999988764

>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.2e-34  Score=234.66  Aligned_cols=131  Identities=31%  Similarity=0.624  Sum_probs=119.8

Q ss_pred             CCCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCC
Q 030132           45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA  124 (182)
Q Consensus        45 ~~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~  124 (182)
                      -+...|||+..|||||..+...+ .+.|.+.|+.|++|+|||+||++.++|+.++.||..++|++||+||+|+|||++|+
T Consensus        32 ~f~~~hpl~~~wtlw~l~p~e~g-~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~  110 (217)
T COG5053          32 HFMNKHPLAFHWTLWFLKPPEDG-LESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANM  110 (217)
T ss_pred             hHhhcCccccceEEEEecCCccc-hhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccC
Confidence            36788999999999999887533 45599999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEcCCC---ChHHHHHHHHhhhccCCe-eecceEeEEEEEeeeCCeeEEE
Q 030132          125 NGGKWTVIFPKG---KSDTSWLYTVCLDSMSGF-VCLCWFISLILNTKYGFKFVHV  176 (182)
Q Consensus       125 nGGkw~i~i~k~---~~d~iWe~llLa~ig~~~-v~~~~i~Gi~l~~k~~~~~v~v  176 (182)
                      |||+|.+.++..   ..+++|+.+||++||..+ ..+.+|||+|.+-|.+.-+++|
T Consensus       111 ~Ggkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAi  166 (217)
T COG5053         111 NGGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAI  166 (217)
T ss_pred             CCCeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEE
Confidence            999999999874   479999999999999997 4567999999999999988876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
2wmc_A	178	Crystal Structure Of Eukaryotic Initiation Factor 4		3e-47
2idr_A	177	Crystal Structure Of Translation Initiation Factor		3e-40
2idv_A	177	Crystal Structure Of Wheat C113s Mutant Eif4e Bound		4e-39
2w97_B	217	Crystal Structure Of Eif4e Bound To Glycerol And Ei		5e-18
4dt6_A	240	Co-Crystal Structure Of Eif4e With Inhibitor Length		2e-17
1ipb_A	217	Crystal Structure Of Eukaryotic Initiation Factor 4		2e-17
1ej1_A	190	Cocrystal Structure Of The Messenger Rna 5' Cap-Bin		2e-17
1ap8_A	213	Translation Initiation Factor Eif4e In Complex With		2e-17
1wkw_A	191	Crystal Structure Of The Ternary Complex Of Eif4e-M		2e-17
1rf8_A	213	Solution Structure Of The Yeast Translation Initiat		9e-17
3hxg_A	189	Crystal Structure Of Schistsome Eif4e Complexed Wit		4e-16
4axg_A	248	Structure Of Eif4e-Cup Complex Length = 248		7e-16
2jgb_A	195	Structure Of Human Eif4e Homologous Protein 4ehp Wi		1e-15
3m93_A	189	Complex Crystal Structure Of Ascaris Suum Eif4e-3 W		3e-15
4b6v_A	207	The Third Member Of The Eif4e Family Represses Gene		3e-13

>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From Pisum Sativum Length = 178

Iteration: 1
 Score =  184 bits (466), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 83/98 (84%), Positives = 90/98 (91%)
Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PH LE+SWTFWFD P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFY
Sbjct: 2   PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFY 61
Query: 109 CFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTV 146
           CFK+KIEPKWEDP+CANGGKWT  +PKGKSDTSWLYT+
Sbjct: 62  CFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTL 99

>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e From Wheat Length = 177

Iteration: 1
 Score =  160 bits (405), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 85/97 (87%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2   HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTV 146
           FKNKIEPKWEDP+CANGGKWT+   +GKSDT WL+T+
Sbjct: 62  FKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTL 98

>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7- Methyl-Gdp Length = 177

Iteration: 1
 Score =  157 bits (396), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 84/97 (86%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2   HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTV 146
           FKNKIEPKWEDP+ ANGGKWT+   +GKSDT WL+T+
Sbjct: 62  FKNKIEPKWEDPISANGGKWTISCGRGKSDTFWLHTL 98

>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1 Peptide Length = 217

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F K K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 37  HPLQNRWALWF---FKKDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYT-VCL-----DSMSGFVC 156
           FK+ IEP WED     GG+W +   K +     D  WL T +CL     D  S  VC
Sbjct: 94  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 150

>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor Length = 240

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 60  HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 116
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYT-VCL-----DSMSGFVC 156
           FK+ IEP WED     GG+W +   K +     D  WL T +CL     D  S  VC
Sbjct: 117 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 173

>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e Complexed With 7-methyl Gpppa Length = 217

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 37  HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYT-VCL-----DSMSGFVC 156
           FK+ IEP WED     GG+W +   K +     D  WL T +CL     D  S  VC
Sbjct: 94  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 150

>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding Protein (Eif4e) Bound To 7-Methyl-Gdp Length = 190

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 10  HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 66
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYT-VCL-----DSMSGFVC 156
           FK+ IEP WED     GG+W +   K +     D  WL T +CL     D  S  VC
Sbjct: 67  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 123

>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp, Nmr, 20 Structures Length = 213

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL   WT W+  P A  K  +W   +R + +F +VEEFW++  NI  P +L + +D++ 
Sbjct: 37  HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 95
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTVC 147
           F+N + P+WED   A GGKW+    +GK    D  WL T+ 
Sbjct: 96  FRNDVRPEWEDEANAKGGKWSFQL-RGKGADIDELWLRTLL 135

>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa- 4ebp1 Peptide Length = 191

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 11  HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 67
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYT-VCL-----DSMSGFVC 156
           FK+ IEP WED     GG+W +   K +     D  WL T +CL     D  S  VC
Sbjct: 68  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 124

>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation Factor Eif4e In Complex With M7gdp And Eif4gi Residues 393 To 490 Length = 213

Iteration: 1
 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL   WT W+  P A  K  +W   +R + +F +VEEFW++  NI  P +L + +D++ 
Sbjct: 37  HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 95
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCLDSMSG 153
           F+N + P+WED   A GGKW+       +D   L+   L ++ G
Sbjct: 96  FRNDVRPEWEDEANAKGGKWSFQLCGKGADIDELWLCTLLAVIG 139

>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With M7gpppa And 4e-Bp Length = 189

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PHPL+ SW+++    F   K   W   +  + TFS++E+FWS+  +   P ++  G D Y
Sbjct: 9   PHPLQDSWSYYL---FQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65
Query: 109 CFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCLDSMSG 153
            FK+ I PKWEDP   NGG+W +I    + D  +L+   L  + G
Sbjct: 66  MFKSDIMPKWEDPKNENGGRW-LINVTARQDVDFLWDELLMLLIG 109

>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex Length = 248

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL + WT W+       +  +W      I +F +VE+FWSLYN+I  PS++ +G+D+  
Sbjct: 70  HPLMNVWTLWY---LENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSL 126
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWL-YTVCL 148
           FK  I P WED     GG+W +   K      D  WL   +CL
Sbjct: 127 FKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCL 169

>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With M7gtp Length = 195

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 50  HPLEHSWTFWFDN--PFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADF 107
           HPL++++TFW+    P   +   ++  +++ I TF+SVE+FW  Y+++  P  L   +DF
Sbjct: 15  HPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDF 74
Query: 108 YCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSW 142
           + FK  I+P WED    NGGKW +   KG +   W
Sbjct: 75  HLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCW 109

>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g Cap Length = 189

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL+  W  W+       +   W   ++ +  F +VE+FWSLYN+I   S L  G+D+Y 
Sbjct: 3   HPLQCHWALWY---LKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYL 59
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWL 143
           FK  I+P WED     GG+W V+  K K     D  WL
Sbjct: 60  FKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWL 97

>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene Expression Via A Novel Mode Of Recognition Of The Methyl-7 Guanosine Cap Moiety Length = 207

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 51  PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCF 110
           PL   WTFW D     +  A   S+++ IYT  +V+ FWS+YNNI   + L +   ++  
Sbjct: 31  PLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLM 90
Query: 111 KNKIEPKWEDPVCANGGKWTVIFPKGKSDTSW 142
           + +  P WE+   A GG W +  PK  + T W
Sbjct: 91  RGERRPLWEEESNAKGGVWKMKVPKDSTSTVW 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	1e-35
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	4e-32
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	2e-31
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	4e-30
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	7e-30
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	1e-29
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	3e-29

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177

 Score =  121 bits (305), Expect = 1e-35
 Identities = 70/99 (70%), Positives = 85/99 (85%)

Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2   HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61

Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCL 148
           FKNKIEPKWEDP+CANGGKWT+   +GKSDT WL+T+  
Sbjct: 62  FKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLA 100

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Length = 213

 Score =  113 bits (284), Expect = 4e-32
 Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 15  NTKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGS 74
           + +  +   EE +   +     ++  + +A     HPL   WT W+  P A  K  +W  
Sbjct: 2   SVEEVSKKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKP-AVDKSESWSD 60

Query: 75  SMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFP 134
            +R + +F +VEEFW++  NI  P +L + +D++ F+N + P+WED   A GGKW+    
Sbjct: 61  LLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLR 120

Query: 135 KGKSDTS--WLYTVC 147
              +D    WL T+ 
Sbjct: 121 GKGADIDELWLRTLL 135

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217

 Score =  112 bits (280), Expect = 2e-31
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 7/153 (4%)

Query: 16  TKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSS 75
           T  P  +        E    + + + +       HPL++ W  WF       K  TW ++
Sbjct: 3   TVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKN---DKSKTWQAN 59

Query: 76  MRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPK 135
           +R I  F +VE+FW+LYN+I   S L  G D+  FK+ IEP WED     GG+W +   K
Sbjct: 60  LRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNK 119

Query: 136 GKS----DTSWLYTVCLDSMSGFVCLCWFISLI 164
            +     D  WL T+       F      +   
Sbjct: 120 QQRRSDLDRFWLETLLCLIGESFDDYSDDVCGA 152

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189

 Score =  108 bits (270), Expect = 4e-30
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL+  W  W+       +   W   ++ +  F +VE+FWSLYN+I   S L  G+D+Y 
Sbjct: 3   HPLQCHWALWYLKA---DRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYL 59

Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTVC 147
           FK  I+P WED     GG+W V+  K K     D  WL  + 
Sbjct: 60  FKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLM 101

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189

 Score =  107 bits (268), Expect = 7e-30
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 43  TAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLA 102
               + PHPL+ SW+++        K   W   +  + TFS++E+FWS+  +   P ++ 
Sbjct: 3   LGSPEFPHPLQDSWSYYLFQF---RKALDWDECLEKVATFSTIEDFWSVLTHTVRPREIT 59

Query: 103 VGADFYCFKNKIEPKWEDPVCANGGKWTVIFP-KGKSDTSWLYTVC 147
            G D Y FK+ I PKWEDP   NGG+W +    +   D  W   + 
Sbjct: 60  YGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLM 105

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Length = 190

 Score =  107 bits (267), Expect = 1e-29
 Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 7/121 (5%)

Query: 48  QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADF 107
             HPL++ W  WF       K  TW +++R I  F +VE+FW+LYN+I   S L  G D+
Sbjct: 8   IKHPLQNRWALWFFKN---DKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 64

Query: 108 YCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTVCLDSMSGFVCLCWFISL 163
             FK+ IEP WED     GG+W +   K +     D  WL T+       F      +  
Sbjct: 65  SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 124

Query: 164 I 164
            
Sbjct: 125 A 125

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Length = 195

 Score =  105 bits (264), Expect = 3e-29
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 48  QPHPLEHSWTFWFD--NPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGA 105
             HPL++++TFW+    P   +   ++  +++ I TF+SVE+FW  Y+++  P  L   +
Sbjct: 13  AEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHS 72

Query: 106 DFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCL 148
           DF+ FK  I+P WED    NGGKW +   KG +   W   +  
Sbjct: 73  DFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILA 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	100.0
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	100.0
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	100.0
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	100.0
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	100.0
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	100.0
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	100.0
4axg_A	248	Eukaryotic translation initiation factor 4E; 4E-BP	100.0
1ztp_A	251	Basophilic leukemia expressed protein BLES03; HS.4	97.58

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*

Probab=100.00  E-value=6.6e-49  Score=319.05  Aligned_cols=128  Identities=56%  Similarity=1.021  Sum_probs=122.9

Q ss_pred             CCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCCCcE
Q 030132           49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGK  128 (182)
Q Consensus        49 ~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~nGGk  128 (182)
                      .|||+++|||||+.+..+.+..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+
T Consensus         1 ~HpL~~~Wt~W~~~~~~~~~~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG~   80 (177)
T 2idr_A            1 AHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGK   80 (177)
T ss_dssp             CCEEEEEEEEEEECTTCSSCEEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCEE
T ss_pred             CCCCCCeEEEEEEcCCCCCcccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCCE
Confidence            59999999999999876566789999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCChHHHHHHHHhhhccCCeeecceEeEEEEEeeeCCeeEEE
Q 030132          129 WTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHV  176 (182)
Q Consensus       129 w~i~i~k~~~d~iWe~llLa~ig~~~v~~~~i~Gi~l~~k~~~~~v~v  176 (182)
                      |+|+++|+.+|++|++|||++||+++..+.+|||++|++|.+.++|+|
T Consensus        81 w~i~~~k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~~~~~IsI  128 (177)
T 2idr_A           81 WTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAI  128 (177)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECSSCEEEEE
T ss_pred             EEEEECcCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEecCCcEEEE
Confidence            999999999999999999999999998888999999999999999876

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*

Probab=100.00  E-value=3.8e-48  Score=322.97  Aligned_cols=132  Identities=30%  Similarity=0.644  Sum_probs=122.2

Q ss_pred             CCCCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCC
Q 030132           44 AVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC  123 (182)
Q Consensus        44 ~~~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N  123 (182)
                      ..+...|||+++|||||+.+.. .+..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|
T Consensus        31 ~~~~~~hpL~~~Wt~W~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N  109 (213)
T 1ap8_A           31 AHFDVKHPLNTKWTLWYTKPAV-DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEAN  109 (213)
T ss_dssp             CCCCCSSEEEEEEEEEEECCCG-GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTT
T ss_pred             CCCCCccccCCcEEEEEEcCCc-ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCC
Confidence            4577899999999999998864 456789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcC-C-CChHHHHHHHHhhhccCCeeecc-eEeEEEEEeeeCCeeEEE
Q 030132          124 ANGGKWTVIFP-K-GKSDTSWLYTVCLDSMSGFVCLC-WFISLILNTKYGFKFVHV  176 (182)
Q Consensus       124 ~nGGkw~i~i~-k-~~~d~iWe~llLa~ig~~~v~~~-~i~Gi~l~~k~~~~~v~v  176 (182)
                      ++||||+|+++ + ..+|++|++|||++||+++..+. +|||++|++|.+.++|+|
T Consensus       110 ~~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsI  165 (213)
T 1ap8_A          110 AKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFAL  165 (213)
T ss_dssp             TTSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEE
T ss_pred             CCCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEE
Confidence            99999999984 3 47899999999999999987666 999999999999999876

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A

Probab=100.00  E-value=1.5e-47  Score=315.35  Aligned_cols=132  Identities=27%  Similarity=0.571  Sum_probs=123.6

Q ss_pred             CCCCCCCCccceEEEEeCCCC--cccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCC
Q 030132           45 VMQQPHPLEHSWTFWFDNPFA--KSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPV  122 (182)
Q Consensus        45 ~~~~~hpL~~~WtfW~~~~~~--~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~  122 (182)
                      .....|||+++|||||+.+..  +.+..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+
T Consensus        10 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~   89 (195)
T 2jgb_A           10 PGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDA   89 (195)
T ss_dssp             CCTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTT
T ss_pred             CCCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCC
Confidence            366789999999999997532  234678999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEcCCCChHHHHHHHHhhhccCCeeecceEeEEEEEeeeCCeeEEE
Q 030132          123 CANGGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHV  176 (182)
Q Consensus       123 N~nGGkw~i~i~k~~~d~iWe~llLa~ig~~~v~~~~i~Gi~l~~k~~~~~v~v  176 (182)
                      |++||+|+|+++|+.+|++|+++||++||+++..+.+|||++|++|.+.++|+|
T Consensus        90 N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~~~~IsI  143 (195)
T 2jgb_A           90 NKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISI  143 (195)
T ss_dssp             TTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSSCEEEEE
T ss_pred             CCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecCCcEEEE
Confidence            999999999999999999999999999999998889999999999999999876

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*

Probab=100.00  E-value=1.6e-47  Score=319.95  Aligned_cols=128  Identities=33%  Similarity=0.614  Sum_probs=120.2

Q ss_pred             CCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCC
Q 030132           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (182)
Q Consensus        46 ~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~n  125 (182)
                      ....|||+++|||||+.+.   +..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++
T Consensus        33 ~~~~hpL~~~Wt~W~~~~~---~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~  109 (217)
T 1ipb_A           33 HYIKHPLQNRWALWFFKND---KSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR  109 (217)
T ss_dssp             GTSCCEEEEEEEEEEECCC---TTSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTT
T ss_pred             cccCCCCCCeEEEEEEeCC---cccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence            4568999999999999875   3678999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcCCCC----hHHHHHHHHhhhccCCe-eecceEeEEEEEeeeCCeeEEE
Q 030132          126 GGKWTVIFPKGK----SDTSWLYTVCLDSMSGF-VCLCWFISLILNTKYGFKFVHV  176 (182)
Q Consensus       126 GGkw~i~i~k~~----~d~iWe~llLa~ig~~~-v~~~~i~Gi~l~~k~~~~~v~v  176 (182)
                      ||||+|++++..    +|++|++|||++||++| ..+.+|||++|++|.+.++|+|
T Consensus       110 GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsI  165 (217)
T 1ipb_A          110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAI  165 (217)
T ss_dssp             CEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEE
T ss_pred             CCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEE
Confidence            999999999864    49999999999999999 7788999999999999999876

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*

Probab=100.00  E-value=5.8e-47  Score=310.61  Aligned_cols=128  Identities=32%  Similarity=0.605  Sum_probs=118.0

Q ss_pred             CCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCC
Q 030132           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (182)
Q Consensus        46 ~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~n  125 (182)
                      ....|||+++|||||+.+.+   ..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++
T Consensus         6 ~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~   82 (190)
T 1l8b_A            6 HYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR   82 (190)
T ss_dssp             ---CCEEEEEEEEEEEECCS---SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTT
T ss_pred             ccccCCCCCeEEEEEEcCCC---ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence            45789999999999998753   568999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcCCCC----hHHHHHHHHhhhccCCe-eecceEeEEEEEeeeCCeeEEE
Q 030132          126 GGKWTVIFPKGK----SDTSWLYTVCLDSMSGF-VCLCWFISLILNTKYGFKFVHV  176 (182)
Q Consensus       126 GGkw~i~i~k~~----~d~iWe~llLa~ig~~~-v~~~~i~Gi~l~~k~~~~~v~v  176 (182)
                      ||||+|++++..    +|++|++|||++||+++ ..+.+|||++|++|.+.++|+|
T Consensus        83 GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsI  138 (190)
T 1l8b_A           83 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAI  138 (190)
T ss_dssp             CEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEE
T ss_pred             CCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEE
Confidence            999999998754    59999999999999999 6688999999999999998876

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*

Probab=100.00  E-value=6.1e-47  Score=310.64  Aligned_cols=130  Identities=28%  Similarity=0.551  Sum_probs=120.1

Q ss_pred             CCCCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCC
Q 030132           44 AVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC  123 (182)
Q Consensus        44 ~~~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N  123 (182)
                      .++...|||+++|||||+++..   ..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|
T Consensus         4 ~~~~~~HpL~~~Wt~W~~~~~~---~~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~N   80 (189)
T 3hxi_A            4 GSPEFPHPLQDSWSYYLFQFRK---ALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKN   80 (189)
T ss_dssp             ---CCCCEEEEEEEEEEECCCT---TCCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHHH
T ss_pred             CCCCccCCCCCeEEEEEECCCC---ccChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCCcCC
Confidence            4578899999999999998753   4689999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCC-ChHHHHHHHHhhhccCCe-eecce--EeEEEEEeeeCCeeEEE
Q 030132          124 ANGGKWTVIFPKG-KSDTSWLYTVCLDSMSGF-VCLCW--FISLILNTKYGFKFVHV  176 (182)
Q Consensus       124 ~nGGkw~i~i~k~-~~d~iWe~llLa~ig~~~-v~~~~--i~Gi~l~~k~~~~~v~v  176 (182)
                      ++||||+|+++++ .+|++|+++||++||+++ ..+.+  |||++|++|.+.++|+|
T Consensus        81 ~~GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsI  137 (189)
T 3hxi_A           81 ENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSV  137 (189)
T ss_dssp             HTCEEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEE
T ss_pred             CCCcEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEE
Confidence            9999999999997 689999999999999999 66677  99999999999999876

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*

Probab=100.00  E-value=5.2e-46  Score=305.20  Aligned_cols=126  Identities=31%  Similarity=0.642  Sum_probs=117.8

Q ss_pred             CCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCCCc
Q 030132           48 QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGG  127 (182)
Q Consensus        48 ~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~nGG  127 (182)
                      ..|||+++|||||+.+.   ...+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||
T Consensus         1 ~~HpL~~~Wt~W~~~~~---~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GG   77 (189)
T 3m94_A            1 MRHPLQCHWALWYLKAD---RSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGG   77 (189)
T ss_dssp             CCCEEEEEEEEEEECCC---SSSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCE
T ss_pred             CCCCCCCcEEEEEECCC---CccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCC
Confidence            36999999999999764   357999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCC----ChHHHHHHHHhhhccCCee-ecceEeEEEEEeeeCCeeEEE
Q 030132          128 KWTVIFPKG----KSDTSWLYTVCLDSMSGFV-CLCWFISLILNTKYGFKFVHV  176 (182)
Q Consensus       128 kw~i~i~k~----~~d~iWe~llLa~ig~~~v-~~~~i~Gi~l~~k~~~~~v~v  176 (182)
                      +|+|+++|.    .+|++|++|||++||+++. .+.+|||++|++|.+.++|+|
T Consensus        78 kw~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsI  131 (189)
T 3m94_A           78 RWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSL  131 (189)
T ss_dssp             EEEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEE
T ss_pred             EEEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEE
Confidence            999999885    4699999999999999984 688999999999999998876

>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}

Probab=100.00  E-value=9.2e-45  Score=308.49  Aligned_cols=129  Identities=29%  Similarity=0.617  Sum_probs=119.4

Q ss_pred             CCCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCC
Q 030132           45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA  124 (182)
Q Consensus        45 ~~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~  124 (182)
                      .....|||+++|||||+.+.   +..+|.+++++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus        65 ~~~~kHpL~~~WtlW~~~~~---~~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~N~  141 (248)
T 4axg_A           65 EHLYKHPLMNVWTLWYLEND---RSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANK  141 (248)
T ss_dssp             -CCCCCEEEEEEEEEEESCS---CCCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTTTT
T ss_pred             ccccCCCCCCeEEEEEeeCC---CccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCccCC
Confidence            46678999999999999764   356899999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEcCCCC---hHHHHHHHHhhhccCCeeecceEeEEEEEeeeCCeeEEE
Q 030132          125 NGGKWTVIFPKGK---SDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHV  176 (182)
Q Consensus       125 nGGkw~i~i~k~~---~d~iWe~llLa~ig~~~v~~~~i~Gi~l~~k~~~~~v~v  176 (182)
                      +||+|+|+++|..   +|++|++|||++||+.+..+.+||||+|++|.+...|+|
T Consensus       142 ~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~~~~~I~I  196 (248)
T 4axg_A          142 QGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISI  196 (248)
T ss_dssp             TCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECSSEEEEEE
T ss_pred             CccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecCCCCEEEE
Confidence            9999999998754   589999999999999998888999999999999988865

>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A

Probab=97.58  E-value=3.5e-05  Score=65.37  Aligned_cols=52  Identities=13%  Similarity=0.043  Sum_probs=41.1

Q ss_pred             CCCCCCcEEEEEcCC-CChHHHHHHHHhhhccCCeeecceEeEEEEEeeeCCeeEEEee
Q 030132          121 PVCANGGKWTVIFPK-GKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHVLG  178 (182)
Q Consensus       121 p~N~nGGkw~i~i~k-~~~d~iWe~llLa~ig~~~v~~~~i~Gi~l~~k~~~~~v~v~~  178 (182)
                      ..|..||||+|.+++ ..+|++|++++++++.      ..|||..|++|......++|.
T Consensus       121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~------g~L~gAKVstr~~~~~~~vIc  173 (251)
T 1ztp_A          121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVE------GRLQVAKVSPRAKEGGRQVIC  173 (251)
T ss_dssp             HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHH------TSCSEEEECCBCSSSCCEEEE
T ss_pred             HcCCCCceEEEecChHHHHHHHHHHHHHHHHh------CceeEEEEecCCCCCCCCEEE
Confidence            468999999999998 7899999999999974      334788999987534444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d1l8ba_	182	d.86.1.1 (A:) Translation initiation factor eIF4e	6e-31
d1ap8a_	213	d.86.1.1 (A:) Translation initiation factor eIF4e	5e-30

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (272), Expect = 6e-31
 Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF       K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 2   HPLQNRWALWFFKN---DKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 58

Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTVCL 148
           FK+ IEP WED     GG+W +   K +     D  WL T+  
Sbjct: 59  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLC 101

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (268), Expect = 5e-30
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 25  EELEEGEIVGDDESSK----NSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIY 80
           ++ EE   V D  ++     + +A     HPL   WT W+  P A  K  +W   +R + 
Sbjct: 8   KKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKP-AVDKSESWSDLLRPVT 66

Query: 81  TFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDT 140
           +F +VEEFW++  NI  P +L + +D++ F+N + P+WED   A GGKW+       +D 
Sbjct: 67  SFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADI 126

Query: 141 SWLYTVCLDSMSG 153
             L+   L ++ G
Sbjct: 127 DELWLRTLLAVIG 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1ap8a_	213	Translation initiation factor eIF4e {Baker's yeast	100.0
d1l8ba_	182	Translation initiation factor eIF4e {Mouse (Mus mu	100.0

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-42  Score=285.71  Aligned_cols=130  Identities=29%  Similarity=0.645  Sum_probs=117.9

Q ss_pred             CCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCC
Q 030132           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (182)
Q Consensus        46 ~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~n  125 (182)
                      +...|||+++|||||+.+.. .+..+|.++|++|++|+|||+||++|++|++|++|+.+++|||||+||+|+||||+|+|
T Consensus        33 ~~~kHpL~~~Wt~wy~~~~~-~~~~~y~~~l~~I~~f~TvE~Fw~~~~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~n  111 (213)
T d1ap8a_          33 FDVKHPLNTKWTLWYTKPAV-DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAK  111 (213)
T ss_dssp             CCCSSEEEEEEEEEEECCCG-GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTTT
T ss_pred             CCcCCcCCCcEEEEEEcCCC-CcccchhhhceEEEEEccHHHHHHHHHhCCCHHHCCcccEEEEEecCccCCCCCcccCC
Confidence            34569999999999998763 34678999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcCCC--ChHHHHHHHHhhhccCCee-ecceEeEEEEEeeeCCeeEEE
Q 030132          126 GGKWTVIFPKG--KSDTSWLYTVCLDSMSGFV-CLCWFISLILNTKYGFKFVHV  176 (182)
Q Consensus       126 GGkw~i~i~k~--~~d~iWe~llLa~ig~~~v-~~~~i~Gi~l~~k~~~~~v~v  176 (182)
                      ||+|++++++.  .++++|+++||++||+.+. ....||||+++.|.+..+|+|
T Consensus       112 GG~~~~~i~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~I  165 (213)
T d1ap8a_         112 GGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFAL  165 (213)
T ss_dssp             SEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEE
T ss_pred             CCEEEEEEccCCCcHHHHHHHHHHHHHhcccccCCCEEeeEEEEecCCceEEEE
Confidence            99999999864  5799999999999999874 445799999999999887765

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.2e-42  Score=276.03  Aligned_cols=125  Identities=32%  Similarity=0.632  Sum_probs=115.1

Q ss_pred             CCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCCCcE
Q 030132           49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGK  128 (182)
Q Consensus        49 ~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~nGGk  128 (182)
                      .|||+++|||||+.+..   ..+|.+++++|++|+|||+||++|++|++|++|+.+++|||||+||+|+||||+|++||+
T Consensus         1 kHpL~~~Wt~w~~~~~~---~~~~~~~~~~i~~f~tvE~Fw~~~~~i~~~~~l~~~~~~~lFk~gI~P~WED~~N~~GG~   77 (182)
T d1l8ba_           1 KHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGR   77 (182)
T ss_dssp             CCEEEEEEEEEEEECCS---SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTCEE
T ss_pred             CCCCCCeEEEEEEeCCC---CchhhhcceEEEEEcCHHHHHHHHHcCCChHHCCccceEEEEecCccCCCCCcccCCCCE
Confidence            59999999999998753   468999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcC----CCChHHHHHHHHhhhccCCee-ecceEeEEEEEeeeCCeeEEE
Q 030132          129 WTVIFP----KGKSDTSWLYTVCLDSMSGFV-CLCWFISLILNTKYGFKFVHV  176 (182)
Q Consensus       129 w~i~i~----k~~~d~iWe~llLa~ig~~~v-~~~~i~Gi~l~~k~~~~~v~v  176 (182)
                      |+|+++    ++.++.+|++|||++||+++. .+..||||++++|.+..+|+|
T Consensus        78 ~~~~i~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~I  130 (182)
T d1l8ba_          78 WLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAI  130 (182)
T ss_dssp             EEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEE
T ss_pred             EEEEECcccccchHHHHHHHHHHHHHhcccccCCCeeccEEEEecCCCcEEEE
Confidence            999995    457899999999999999974 456899999999999877665