Citrus Sinensis ID: 030136


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
MAKLSAVVSLLISRLVAAAAIQTVTWATRLESAKETTTNLQFYFHDTLSGKNPSAVRIAQAIDTDKSPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQTHRMDFKTGDAIVRYNVTVVH
cccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEEcccccccEEEEEcccccccccccccEEEEEEcccccccccccccEEEEEEEEEEEcccccEEEEEEEEEEEccccccccEEEEccccccccccEEEEEEccccEEEEEEEEEEEEEEEccccccEEEEEEEEEEc
cHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEccccccEEEEEcccccccccccccEEEEEcccccccccccccccccccEEEEEccccccEEEEEEEEEEEcccccccEEEEEccccHHHHcccccEEccccEEEEEEEEEEEEEEEEEcccccEEEEEEEEEEc
MAKLSAVVSLLISRLVAAAAIQTVTWATRLESAKETTTNLQFyfhdtlsgknpsaVRIAQaidtdksptlfgivmmaddpltetpdpqsklvgraqglygsacQDQLSLIMSMSFvfvdgpynrssisllgnnramnpvrempivggtGFFRLARGYAIAQthrmdfktgdAIVRYNVTVVH
MAKLSAVVSLLISRLVAAAAIQTVTWATRLESAKETTTNLQFYfhdtlsgknpSAVRIAQAidtdksptlFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQThrmdfktgdaIVRYNVTVVH
MAKLSAVVSLLISRLVAAAAIQTVTWATRLESAKETTTNLQFYFHDTLSGKNPSAVRIAQAIDTDKSPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQTHRMDFKTGDAIVRYNVTVVH
*****AVVSLLISRLVAAAAIQTVTWATRLESAKETTTNLQFYFHDTLSGKNPSAVRIAQAIDTDKSPTLFGIVMMA**************VGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQTHRMDFKTGDAIVRYNVTV**
*AKLSAVVSLLISRLVAAAAIQ*****************LQFYFHDTLSGKNPSAVRIAQAIDTDKSPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQTHRMDFKTGDAIVRYNVTVVH
MAKLSAVVSLLISRLVAAAAIQTVTWATRLESAKETTTNLQFYFHDTLSGKNPSAVRIAQAIDTDKSPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQTHRMDFKTGDAIVRYNVTVVH
MAKLSAVVSLLISRLVAAAAIQTVTWATRLESAKETTTNLQFYFHDTLSGKNPSAVRIAQAIDTDKSPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQTHRMDFKTGDAIVRYNVTVVH
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAKLSAVVSLLISRLVAAAAIQTVTWATRLESAKETTTNLQFYFHDTLSGKNPSAVRIAQAIDTDKSPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQTHRMDFKTGDAIVRYNVTVVH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query182 2.2.26 [Sep-21-2011]
P13240184 Disease resistance respon N/A no 0.758 0.75 0.333 4e-11
>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2 Back     alignment and function desciption
 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 12/150 (8%)

Query: 39  NLQFYFHDTL-SGKNP----SAVRIA-QAIDTDK-SP-TLFGIVMMADDPLTETPDPQSK 90
           NL FYFHD L +GKN     SA+  A + +   K +P + FG +++ DDP+T +    SK
Sbjct: 33  NLVFYFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSLSSK 92

Query: 91  LVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGF 150
            VGRAQG Y    ++  +  +S +FV ++  +++ +I+  G +  +   R++ + GGTG 
Sbjct: 93  QVGRAQGFYIYDTKNTYTSWLSFTFV-LNSTHHQGTITFAGADPIVAKTRDISVTGGTGD 151

Query: 151 FRLARGYAIAQTHRMDFKTGDAIVRYNVTV 180
           F + RG A   T   +   G+A  R  V +
Sbjct: 152 FFMHRGIATITTDAFE---GEAYFRLGVYI 178





Pisum sativum (taxid: 3888)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query182
297824947187 hypothetical protein ARALYDRAFT_480959 [ 1.0 0.973 0.657 3e-66
224105209184 predicted protein [Populus trichocarpa] 0.989 0.978 0.661 5e-65
30681257187 disease resistance-responsive, dirigent 0.961 0.935 0.661 4e-64
4803933276 putative disease resistance response pro 0.956 0.630 0.647 3e-62
356544752183 PREDICTED: disease resistance response p 0.950 0.945 0.627 3e-61
388495566191 unknown [Lotus japonicus] 0.923 0.879 0.649 4e-61
225427957184 PREDICTED: disease resistance response p 0.901 0.891 0.689 2e-60
255574738186 Disease resistance response protein, put 0.818 0.801 0.718 7e-60
449458582184 PREDICTED: disease resistance response p 0.846 0.836 0.6 9e-50
307136164184 disease resistance response protein [Cuc 0.956 0.945 0.520 3e-49
>gi|297824947|ref|XP_002880356.1| hypothetical protein ARALYDRAFT_480959 [Arabidopsis lyrata subsp. lyrata] gi|297326195|gb|EFH56615.1| hypothetical protein ARALYDRAFT_480959 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/187 (65%), Positives = 147/187 (78%), Gaps = 5/187 (2%)

Query: 1   MAKLSAVVSLLISRL----VAAAAIQTVTWATRLE-SAKETTTNLQFYFHDTLSGKNPSA 55
           MAK   V  +L+  +    +AA   +  +WA RLE + KE  TNLQFYFHDTLSGKNP+A
Sbjct: 1   MAKEEYVSRMLVMLIMIMPLAARGSRLYSWANRLEETGKEKVTNLQFYFHDTLSGKNPTA 60

Query: 56  VRIAQAIDTDKSPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSF 115
           V++AQ  DTDKSPTLFG V M DD LTET DP+SKLVGRAQGLYGS+C++++ LIM+MSF
Sbjct: 61  VKVAQGTDTDKSPTLFGAVFMVDDALTETADPKSKLVGRAQGLYGSSCKEEVGLIMAMSF 120

Query: 116 VFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQTHRMDFKTGDAIVR 175
            F DGPY  S+IS++G N AMNP+REMPIVGGTG FR+ARGYAIA+T+  D KTGDAIV 
Sbjct: 121 CFEDGPYKDSTISMIGKNSAMNPIREMPIVGGTGMFRMARGYAIAKTNWFDPKTGDAIVG 180

Query: 176 YNVTVVH 182
           YNVTVVH
Sbjct: 181 YNVTVVH 187




Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105209|ref|XP_002313728.1| predicted protein [Populus trichocarpa] gi|222850136|gb|EEE87683.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30681257|ref|NP_850009.1| disease resistance-responsive, dirigent domain-containing protein [Arabidopsis thaliana] gi|28973750|gb|AAO64191.1| putative disease resistance response protein/dirigent protein [Arabidopsis thaliana] gi|50253572|gb|AAT71988.1| At2g21100 [Arabidopsis thaliana] gi|110736722|dbj|BAF00324.1| putative disease resistance response protein [Arabidopsis thaliana] gi|330252029|gb|AEC07123.1| disease resistance-responsive, dirigent domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4803933|gb|AAD29806.1| putative disease resistance response protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356544752|ref|XP_003540811.1| PREDICTED: disease resistance response protein 206-like [Glycine max] Back     alignment and taxonomy information
>gi|388495566|gb|AFK35849.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|225427957|ref|XP_002276722.1| PREDICTED: disease resistance response protein 206-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574738|ref|XP_002528277.1| Disease resistance response protein, putative [Ricinus communis] gi|223532314|gb|EEF34115.1| Disease resistance response protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449458582|ref|XP_004147026.1| PREDICTED: disease resistance response protein 206-like [Cucumis sativus] gi|449489684|ref|XP_004158385.1| PREDICTED: disease resistance response protein 206-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307136164|gb|ADN34005.1| disease resistance response protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query182
TAIR|locus:2047002187 AT2G21100 "AT2G21100" [Arabido 0.961 0.935 0.661 1.7e-59
TAIR|locus:2162366182 AT5G42510 "AT5G42510" [Arabido 0.983 0.983 0.448 1.7e-36
TAIR|locus:2162361185 AT5G42500 "AT5G42500" [Arabido 0.983 0.967 0.430 4e-35
TAIR|locus:2196282185 AT1G58170 "AT1G58170" [Arabido 0.939 0.924 0.440 1.7e-34
TAIR|locus:2009769189 AT1G65870 "AT1G65870" [Arabido 0.983 0.947 0.402 1.7e-34
TAIR|locus:2154359191 AT5G49040 "AT5G49040" [Arabido 0.818 0.780 0.456 6e-32
TAIR|locus:2017689193 AT1G22900 "AT1G22900" [Arabido 0.972 0.917 0.4 9.8e-32
TAIR|locus:2121249190 AT4G38700 "AT4G38700" [Arabido 0.818 0.784 0.464 9.8e-32
TAIR|locus:2035661187 AT1G55210 "AT1G55210" [Arabido 0.802 0.780 0.456 1.8e-30
TAIR|locus:2047127186 AT2G21110 "AT2G21110" [Arabido 0.851 0.833 0.443 6.2e-30
TAIR|locus:2047002 AT2G21100 "AT2G21100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 117/177 (66%), Positives = 145/177 (81%)

Query:     7 VVSLLISRLVAAAAIQTVTWATRLE-SAKETTTNLQFYFHDTLSGKNPSAVRIAQAIDTD 65
             V+ ++I  LVA  + +  +WA RLE + K+  TNLQFYFHDTLSGKNP+AV++AQ  DT+
Sbjct:    12 VMLIMIMPLVAQGS-RLHSWANRLEETGKDKVTNLQFYFHDTLSGKNPTAVKVAQGTDTE 70

Query:    66 KSPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNRS 125
             KSPTLFG V M DD LTET DP+SKLVGRAQGLYGS+C++++ LIM+MSF F DGPY  S
Sbjct:    71 KSPTLFGAVFMVDDALTETADPKSKLVGRAQGLYGSSCKEEVGLIMAMSFCFEDGPYKDS 130

Query:   126 SISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQTHRMDFKTGDAIVRYNVTVVH 182
             +IS++G N AMNP+REMPIVGGTG FR+ARGYAIA+T+  D KTGDAIV YNVT++H
Sbjct:   131 TISMIGKNSAMNPIREMPIVGGTGMFRMARGYAIARTNWFDPKTGDAIVGYNVTIMH 187




GO:0003674 "molecular_function" evidence=ND
GO:0006952 "defense response" evidence=ISS
GO:0009807 "lignan biosynthetic process" evidence=ISS
TAIR|locus:2162366 AT5G42510 "AT5G42510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162361 AT5G42500 "AT5G42500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196282 AT1G58170 "AT1G58170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009769 AT1G65870 "AT1G65870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154359 AT5G49040 "AT5G49040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017689 AT1G22900 "AT1G22900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121249 AT4G38700 "AT4G38700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035661 AT1G55210 "AT1G55210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047127 AT2G21110 "AT2G21110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query182
pfam03018144 pfam03018, Dirigent, Dirigent-like protein 2e-64
>gnl|CDD|217321 pfam03018, Dirigent, Dirigent-like protein Back     alignment and domain information
 Score =  194 bits (495), Expect = 2e-64
 Identities = 76/145 (52%), Positives = 100/145 (68%), Gaps = 3/145 (2%)

Query: 38  TNLQFYFHDTLSGKNPSAVRIAQAIDTDKSPTLFGIVMMADDPLTETPDPQSKLVGRAQG 97
           T+L FY HD ++G N +AV++A    T+ S   FG V++ DDPLTE PD  SKLVGRAQG
Sbjct: 3   THLHFYMHDIVTGPNATAVQVASPPGTNSSG--FGTVVVIDDPLTEGPDLNSKLVGRAQG 60

Query: 98  LYGSACQDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGY 157
            Y  A QD LSL+M+ +FVF  G YN S+++++G N     VRE+ +VGGTG FR+ARGY
Sbjct: 61  FYVYASQDGLSLLMAFTFVFTSGEYNGSTLAVMGRNPVFEEVRELSVVGGTGKFRMARGY 120

Query: 158 AIAQTHRMDFKTGDAIVRYNVTVVH 182
           A+A+T+     +GDAIV  NV V H
Sbjct: 121 ALARTYF-SLTSGDAIVELNVYVKH 144


This family contains a number of proteins which are induced during disease response in plants. Members of this family are involved in lignification. Length = 144

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 182
PF03018144 Dirigent: Dirigent-like protein; InterPro: IPR0042 100.0
PF06351176 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR 97.62
PLN02343229 allene oxide cyclase 97.02
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants Back     alignment and domain information
Probab=100.00  E-value=9.2e-54  Score=337.94  Aligned_cols=144  Identities=51%  Similarity=0.833  Sum_probs=136.0

Q ss_pred             CeeEEEEEeeeeCCCCCcceEEEeecccCCCCCCCceeEEEEecccccCCCCCCCceeeeEEEEEEeccCCceeEEEEEE
Q 030136           36 TTTNLQFYFHDTLSGKNPSAVRIAQAIDTDKSPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSF  115 (182)
Q Consensus        36 ~~t~l~fY~Hd~~~g~n~t~~~v~~~~~~~~~~~~FG~~~v~Dd~lt~gp~~~S~~VGRaqG~~~~~~~~~~~~~~~~~~  115 (182)
                      |++||+|||||+++|||+|+++|++++.++.  .+||+++|+|||||+||+++||+||||||+|+.+++++.+|++++++
T Consensus         1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~~~--~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~   78 (144)
T PF03018_consen    1 KETHLHFYMHDIVSGPNPTAVVVAEPPGPSS--SGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTL   78 (144)
T ss_pred             CceEEEEEeeecCCCCCCCEEEeccCCCCCC--CCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEE
Confidence            6899999999999999999999998875432  38999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCceEEEecccCCCCCceeeeEeeccccccceEEEEEEEEEEeccCCCCeEEEEEEEEEC
Q 030136          116 VFVDGPYNRSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAIAQTHRMDFKTGDAIVRYNVTVVH  182 (182)
Q Consensus       116 vF~~g~~~GStl~v~G~~~~~~~~~E~aVVGGTG~Fr~ArG~a~~~t~~~~~~~~~~v~e~~V~v~h  182 (182)
                      +|++++||||||+++|+++..+++||||||||||+|||||||++++++ .+..+.++|+|||||++|
T Consensus        79 vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h  144 (144)
T PF03018_consen   79 VFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH  144 (144)
T ss_pred             EEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence            999999999999999999999999999999999999999999999999 345588999999999999



>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5 Back     alignment and domain information
>PLN02343 allene oxide cyclase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query182
2brj_A188 Arabidopsis thaliana genomic DNA, chromosome 3, TA 98.74
4h6b_A195 Allene oxide cyclase; B-barrel, oxylipins, fatty a 98.46
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A Back     alignment and structure
Probab=98.74  E-value=3e-07  Score=73.78  Aligned_cols=102  Identities=22%  Similarity=0.159  Sum_probs=80.1

Q ss_pred             CCCceeEEEEecccccCCCCCCCceeeeEEEEEEec----cCCceeEEEEEEEEcCCCCCCceEEEecccCCCCCceeee
Q 030136           68 PTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSAC----QDQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREMP  143 (182)
Q Consensus        68 ~~~FG~~~v~Dd~lt~gp~~~S~~VGRaqG~~~~~~----~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~a  143 (182)
                      ....|..+.|+++|.+|-.  -+.||.-+|+.+...    +.+..+--.+++.|-+.   | .|+++|..... +...++
T Consensus        42 ~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd~---G-hISvQGpy~t~-~Dt~LA  114 (188)
T 2brj_A           42 MFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDY---G-HLSVQGPYLTY-EDSFLA  114 (188)
T ss_dssp             SSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGGG---E-EEEEEEEEETT-BCEEEE
T ss_pred             CcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCCC---c-eEEEecccccc-ccceee
Confidence            3568999999999997764  588999999988775    33456777788888652   4 69999995333 336899


Q ss_pred             EeeccccccceEEEEEEEEEEeccCCCCeEEEEEEEEE
Q 030136          144 IVGGTGFFRLARGYAIAQTHRMDFKTGDAIVRYNVTVV  181 (182)
Q Consensus       144 VVGGTG~Fr~ArG~a~~~t~~~~~~~~~~v~e~~V~v~  181 (182)
                      |.||||.|+.|+|.++++.+.+.     .-++|.+|+.
T Consensus       115 ITGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~  147 (188)
T 2brj_A          115 ITGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK  147 (188)
T ss_dssp             EEEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred             EecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence            99999999999999999988753     2477888764



>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query182
d2brja1174 Allene oxide cyclase, AOC {Thale cress (Arabidopsi 97.47
d2ooja1133 Hypothetical protein SO1590 {Shewanella oneidensis 80.91
>d2brja1 b.159.1.1 (A:15-188) Allene oxide cyclase, AOC {Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: AOC barrel-like
superfamily: Allene oxide cyclase-like
family: Allene oxide cyclase-like
domain: Allene oxide cyclase, AOC
species: Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]
Probab=97.47  E-value=0.00092  Score=50.85  Aligned_cols=92  Identities=24%  Similarity=0.221  Sum_probs=72.8

Q ss_pred             CCCCceeEEEEecccccCCCCCCCceeeeEEEEEEecc----CCceeEEEEEEEEcCCCCCCceEEEecccCCCCCceee
Q 030136           67 SPTLFGIVMMADDPLTETPDPQSKLVGRAQGLYGSACQ----DQLSLIMSMSFVFVDGPYNRSSISLLGNNRAMNPVREM  142 (182)
Q Consensus        67 ~~~~FG~~~v~Dd~lt~gp~~~S~~VGRaqG~~~~~~~----~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~  142 (182)
                      .-...|..+=|-|+|+.|.  .-+-+|--.|+.+.-..    .+..+--.+++.|-+  | | .|++||.....+. .-+
T Consensus        27 ~~n~lGDlVpFsNkly~g~--l~kRlGitaG~C~liq~~pek~gdryEa~ySfyfGD--y-G-hISvqGpyltyeD-tyl   99 (174)
T d2brja1          27 LMFGLGDLVPFTNKLYTGD--LKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGD--Y-G-HLSVQGPYLTYED-SFL   99 (174)
T ss_dssp             SSSCTTCEEEECCEEEETT--SSCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGG--G-E-EEEEEEEEETTBC-EEE
T ss_pred             ccccccccccccchhcccc--hhhhccceeeEEEEEEecCCcCcceeEEEEEEEecC--c-c-cEEEecccccccc-cee
Confidence            3456899999999999775  45789999999875543    334566777888866  2 4 6999999877654 589


Q ss_pred             eEeeccccccceEEEEEEEEEEe
Q 030136          143 PIVGGTGFFRLARGYAIAQTHRM  165 (182)
Q Consensus       143 aVVGGTG~Fr~ArG~a~~~t~~~  165 (182)
                      +|+||||-|+.|+|-+++..+.+
T Consensus       100 aiTGGsGiFeGa~GqVkL~qivf  122 (174)
T d2brja1         100 AITGGAGIFEGAYGQVKLQQLVY  122 (174)
T ss_dssp             EEEEEEETTTTCEEEEEEEEEET
T ss_pred             eeecccceeecceeEEEEeeeee
Confidence            99999999999999999887764



>d2ooja1 b.159.2.1 (A:2-134) Hypothetical protein SO1590 {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure